HHsearch alignment for GI: 254780255 and conserved domain: PTZ00084

>PTZ00084 40S ribosomal protein S3; Provisional.
Probab=100.00  E-value=0  Score=386.84  Aligned_cols=200  Identities=22%  Similarity=0.283  Sum_probs=185.5

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCC---CEEE
Q ss_conf             2731257999989999999998774226422155325885189999737410013565348998987640358---7057
Q gi|254780255|r   24 ARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTN---SEIH  100 (227)
Q Consensus        24 a~~k~Y~~~L~eD~~IR~fi~k~l~~agis~i~I~Rt~~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~~~~---~~v~  100 (227)
T Consensus         6 ~~~rkFv~~g~~~~~ire~l~k~L~~AG~s~ieIert~~~~~I~I~tarPG~VIGrkG~~I~~L~~~l~k~~~~~~~~v~   85 (220)
T PTZ00084          6 SKKRKFINDGVFYAELNEFLSRELADDGYAGVELRVTPVRTEIIIRATKTREVLGEKGRRIRELTSLIQKRFNYKEGKLQ   85 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCCEEECCCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf             05567998556999999999988886787759999889847999996898558868854699999999998489977437


Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEECCC--CCCCE
Q ss_conf             8799813755337787999999987596368999999998532388559999703678642221578752553--24520
Q gi|254780255|r  101 LSVNEVPKPEINATLIAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRV--PLQTL  178 (227)
Q Consensus       101 i~v~ei~~p~~~A~~iA~~Ia~~Lekr~~fRr~~k~~i~~~~k~g~kGikI~isGRl~G~e~Ar~e~~~~G~v--pl~t~  178 (227)
T Consensus        86 I~V~eV~~p~l~A~lvAe~IA~qLerrv~fRRA~k~ai~~~M~aGAkGikI~vSGRL-g~erARtekf~eG~v~~~g~~~  164 (220)
T PTZ00084         86 LFAERVEVRGLCAMAQAESLRFKLLSGLPVRRAAYGIIRQVMESGAKGCEVIVSGKL-RAQRAKSMKFRDGYMISTGQPH  164 (220)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCC-CHHHHHHHHHHCCEEECCCCHH
T ss_conf             999994488849899999999999746428999999999999758966799983464-5567656553156130289444


Q ss_pred             EEECEEEEEEEEECCCEEEEEEEEEEC---------CCCCCCCCCCCCCHHHHHH
Q ss_conf             000305689999538266799997328---------8537721134332023332
Q gi|254780255|r  179 RAHIDYGTAVAETAYGSCGIKVYVSLR---------DEVSDSDSTIPAAEHRVVE  224 (227)
Q Consensus       179 ~a~idy~~~~a~T~~G~~GvKVwi~~~---------~~~~~~~~~~~~~~~~~~~  224 (227)
T Consensus       165 ~~~id~a~~~a~tk~GviGVkV~Im~P~dp~g~~gp~~~lpD~i~i~~~k~~~~~  219 (220)
T PTZ00084        165 KDFVDTATRHCQMRQGVIGVKVKIMLPYDPTGKNGPSEPLPDVITVLEPKEITAE  219 (220)
T ss_pred             HHHEEEEEEEEECCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf             7533068999954872798999997798877777998899984798798644445