HHsearch alignment for GI: 254780255 and conserved domain: PTZ00084
>PTZ00084 40S ribosomal protein S3; Provisional.
Probab=100.00 E-value=0 Score=386.84 Aligned_cols=200 Identities=22% Similarity=0.283 Sum_probs=185.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCC---CEEE
Q ss_conf 2731257999989999999998774226422155325885189999737410013565348998987640358---7057
Q gi|254780255|r 24 ARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTN---SEIH 100 (227)
Q Consensus 24 a~~k~Y~~~L~eD~~IR~fi~k~l~~agis~i~I~Rt~~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~~~~---~~v~ 100 (227)
T Consensus 6 ~~~rkFv~~g~~~~~ire~l~k~L~~AG~s~ieIert~~~~~I~I~tarPG~VIGrkG~~I~~L~~~l~k~~~~~~~~v~ 85 (220)
T PTZ00084 6 SKKRKFINDGVFYAELNEFLSRELADDGYAGVELRVTPVRTEIIIRATKTREVLGEKGRRIRELTSLIQKRFNYKEGKLQ 85 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCCEEECCCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 05567998556999999999988886787759999889847999996898558868854699999999998489977437
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEECCC--CCCCE
Q ss_conf 8799813755337787999999987596368999999998532388559999703678642221578752553--24520
Q gi|254780255|r 101 LSVNEVPKPEINATLIAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRV--PLQTL 178 (227)
Q Consensus 101 i~v~ei~~p~~~A~~iA~~Ia~~Lekr~~fRr~~k~~i~~~~k~g~kGikI~isGRl~G~e~Ar~e~~~~G~v--pl~t~ 178 (227)
T Consensus 86 I~V~eV~~p~l~A~lvAe~IA~qLerrv~fRRA~k~ai~~~M~aGAkGikI~vSGRL-g~erARtekf~eG~v~~~g~~~ 164 (220)
T PTZ00084 86 LFAERVEVRGLCAMAQAESLRFKLLSGLPVRRAAYGIIRQVMESGAKGCEVIVSGKL-RAQRAKSMKFRDGYMISTGQPH 164 (220)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCC-CHHHHHHHHHHCCEEECCCCHH
T ss_conf 999994488849899999999999746428999999999999758966799983464-5567656553156130289444
Q ss_pred EEECEEEEEEEEECCCEEEEEEEEEEC---------CCCCCCCCCCCCCHHHHHH
Q ss_conf 000305689999538266799997328---------8537721134332023332
Q gi|254780255|r 179 RAHIDYGTAVAETAYGSCGIKVYVSLR---------DEVSDSDSTIPAAEHRVVE 224 (227)
Q Consensus 179 ~a~idy~~~~a~T~~G~~GvKVwi~~~---------~~~~~~~~~~~~~~~~~~~ 224 (227)
T Consensus 165 ~~~id~a~~~a~tk~GviGVkV~Im~P~dp~g~~gp~~~lpD~i~i~~~k~~~~~ 219 (220)
T PTZ00084 165 KDFVDTATRHCQMRQGVIGVKVKIMLPYDPTGKNGPSEPLPDVITVLEPKEITAE 219 (220)
T ss_pred HHHEEEEEEEEECCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCC
T ss_conf 7533068999954872798999997798877777998899984798798644445