HHsearch alignment of GI: 254780255 and MMDB domain: 2zkq_c_95-243
>2zkq_c (c:95-243) 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_C
Probab=100.00 E-value=3.3e-39 Score=246.08 Aligned_cols=102 Identities=24% Similarity=0.293 Sum_probs=97.2
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEECCCCC--CCEEEECEEEEE
Q ss_conf 533778799999998759636899999999853238855999970367864222157875255324--520000305689
Q gi|254780255|r 110 EINATLIAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPL--QTLRAHIDYGTA 187 (227)
Q Consensus 110 ~~~A~~iA~~Ia~~Lekr~~fRr~~k~~i~~~~k~g~kGikI~isGRl~G~e~Ar~e~~~~G~vpl--~t~~a~idy~~~ 187 (227)
.|||.++|++||++||+|++|||+++++++.+|++||+||+|+|||||+| ||||+|||++|+||| ||++++|||++.
T Consensus 1 ~L~A~~iA~~Ia~~Le~~~~fRra~~~~i~~~m~aga~GikI~isGRl~g-erAr~e~~~~G~vplsg~t~~~~Idy~~~ 79 (149)
T 2zkq_c 1 GLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRG-QRAKSMKFVDGLMIHSGDPVNYYVDTAVR 79 (149)
T ss_dssp GGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHSSCSEEEEEECSSGGG-SSCCCBCCEEESSHHHHSSTTCCEEEEEE
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH-HHHHHHHHHCCCCCCCCCHHHHHEEEEEE
T ss_conf 02047999999999970603789999999998765986459999504556-77657787558565688603530116899
Q ss_pred EEEECCCEEEEEEEEEECCCCCCCC
Q ss_conf 9995382667999973288537721
Q gi|254780255|r 188 VAETAYGSCGIKVYVSLRDEVSDSD 212 (227)
Q Consensus 188 ~a~T~~G~~GvKVwi~~~~~~~~~~ 212 (227)
+|+|+||+||||||||++++..+..
T Consensus 80 ~a~t~~GviGVKVwI~~~~~~~~~~ 104 (149)
T 2zkq_c 80 HVLLRQGVLGIKVKIMLPWDPTGKI 104 (149)
T ss_dssp CCCCSSCCCCEEEEEECCCC-----
T ss_pred EEECCEEEEEEEEEEECCCCCCCCC
T ss_conf 9875658899999995276767764