HHsearch alignment of GI: 254780255 and MMDB domain: 3i1m_C_110-233
>3i1m_C (C:110-233) 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 2qal_C* 1p6g_C 1p87_C 2aw7_C 2avy_C 2i2u_C 2i2p_C* 2qan_C* 2qb9_C* 2qbb_C* 2qbd_C ...
Probab=100.00 E-value=1.2e-40 Score=254.35 Aligned_cols=113 Identities=55% Similarity=0.820 Sum_probs=104.8
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECEEEEEEE
Q ss_conf 53377879999999875963689999999985323885599997036786422215787525532452000030568999
Q gi|254780255|r 110 EINATLIAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRAHIDYGTAVA 189 (227)
Q Consensus 110 ~~~A~~iA~~Ia~~Lekr~~fRr~~k~~i~~~~k~g~kGikI~isGRl~G~e~Ar~e~~~~G~vpl~t~~a~idy~~~~a 189 (227)
++||+++|++||.+||++++||++++++++++|++|++|+||+|||||+|+||||+|||++|++||||++++|||++.+|
T Consensus 1 el~A~~ia~~Ia~~Le~~~~frr~~~~~i~~~~~~gakGikI~isGRl~G~erAr~e~~~~G~ipl~t~~a~Idy~~~~a 80 (124)
T 3i1m_C 1 ELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRADIDYNTSEA 80 (124)
T ss_dssp GGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCCSEEEEEEESSTTSCSSCCCCBCCEECCCTTCSSSEEEEEEECC
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHEEHHHCCCCCCCCCCCEEEEEEEEE
T ss_conf 22478999999999972640899999999999875995699997355574132203321108888888362689999999
Q ss_pred EECCCEEEEEEEEEECCCCCCCCCCCCCCHHHH
Q ss_conf 953826679999732885377211343320233
Q gi|254780255|r 190 ETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRV 222 (227)
Q Consensus 190 ~T~~G~~GvKVwi~~~~~~~~~~~~~~~~~~~~ 222 (227)
+|+||+|||||||+++++.++........+...
T Consensus 81 ~tk~Gv~GIKVwI~~~~~~~~~~~~~~~~~~~~ 113 (124)
T 3i1m_C 81 HTTYGVIGVKVWIFKGEILGGMAAVEQPEKPAA 113 (124)
T ss_dssp EETTEECEEEEEEEEECC---------------
T ss_pred ECCCEEEEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 858575899999977862687333347556556