Query         gi|254780255|ref|YP_003064668.1| 30S ribosomal protein S3 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 227
No_of_seqs    132 out of 1311
Neff          6.6 
Searched_HMMs 33803
Date          Tue May 24 05:55:14 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780255.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3i1m_C 30S ribosomal protein  100.0 1.2E-40 4.2E-45  254.4   9.7  113  110-222     1-113 (124)
  2 >3i1m_C 30S ribosomal protein  100.0 3.4E-40 9.8E-45  251.8   6.1  109    1-109     1-109 (109)
  3 >2vqe_C 30S ribosomal protein  100.0 1.7E-39 5.2E-44  247.7   9.2  109  110-218     1-109 (130)
  4 >2vqe_C 30S ribosomal protein  100.0 1.2E-39 3.5E-44  248.7   6.6  109    1-109     1-109 (109)
  5 >2zkq_c 40S ribosomal protein  100.0 3.3E-39 9.7E-44  246.1   7.6  102  110-212     1-104 (149)
  6 >3bbn_C Ribosomal protein S3;  100.0   1E-38 3.1E-43  243.2   5.3  110    1-110     1-121 (121)
  7 >3bbn_C Ribosomal protein S3;  100.0 1.8E-38 5.3E-43  241.8   6.0   97  111-207     1-97  (97)
  8 >2zkq_c 40S ribosomal protein   99.9 9.5E-25 2.8E-29  162.5   1.1   92   20-122     2-93  (94)
  9 >1wh9_A 40S ribosomal protein   99.8 3.2E-22 9.5E-27  147.9  -1.8   86   33-129     6-91  (92)
 10 >1ega_A Protein (GTP-binding p  96.8   0.006 1.8E-07   36.6   7.5   79   27-107     7-101 (103)
 11 >3gku_A Probable RNA-binding p  95.4    0.01   3E-07   35.3   2.8   59   38-96      5-66  (80)
 12 >1wf3_A GTP-binding protein; G  90.8     1.1 3.2E-05   23.5   7.7   82   38-119    17-115 (122)
 13 >3iev_A GTP-binding protein ER  84.2     2.8 8.4E-05   21.2   7.0   67   38-104    14-97  (104)
 14 >2cxc_A NUSA; transcription te  82.7     1.5 4.3E-05   22.8   3.6   56   37-92      9-66  (75)
 15 >2cxc_A NUSA; transcription te  82.0     1.4 4.2E-05   22.9   3.3   58   39-96      3-62  (69)
 16 >2asb_A Transcription elongati  77.0     2.6 7.6E-05   21.4   3.3   54   39-92      3-57  (94)
 17 >1k0r_A NUSA; two component ar  75.9     2.8 8.3E-05   21.2   3.3   53   39-91      3-56  (86)
 18 >1tua_A Hypothetical protein A  75.3     5.5 0.00016   19.5   4.6   70   63-132     5-78  (79)
 19 >1hh2_P NUSA, N utilization su  74.4       3 8.8E-05   21.0   3.1   54   39-92      3-57  (68)
 20 >2e3u_A PH-DIM2P, hypothetical  64.6     7.7 0.00023   18.7   3.5   71   62-133    34-109 (109)
 21 >1j4w_A FUSE binding protein;   58.5     5.5 0.00016   19.5   1.9   32   61-92     15-46  (86)
 22 >1dtj_A RNA-binding neurooncol  55.8     6.8  0.0002   19.0   2.0   30   63-92      4-33  (76)
 23 >1zzk_A Heterogeneous nuclear   55.1      11 0.00032   17.8   2.9   30   63-92      8-37  (82)
 24 >2hh2_A KH-type splicing regul  54.1      10  0.0003   18.0   2.6   30   63-92      8-37  (107)
 25 >2axy_A Poly(RC)-binding prote  52.4     5.7 0.00017   19.4   1.1   31   63-93      6-36  (73)
 26 >2qnd_A FMR1 protein; KH domai  51.4     3.7 0.00011   20.5   0.1   31   62-92      4-34  (64)
 27 >2hh3_A KH-type splicing regul  49.4      10  0.0003   17.9   2.1   33   61-93     10-42  (106)
 28 >2z0s_A Probable exosome compl  48.7      18 0.00054   16.5   4.7   63   64-130     3-68  (88)
 29 >2opv_A KHSRP protein; KH doma  48.4     8.1 0.00024   18.5   1.4   29   64-92     16-44  (85)
 30 >2qnd_A FMR1 protein; KH domai  47.4      11 0.00032   17.8   1.9   29   64-92      5-33  (80)
 31 >2jvz_A KH type-splicing, FAR   47.2     8.5 0.00025   18.4   1.3   29   64-92      4-32  (81)
 32 >1ec6_A RNA-binding protein NO  45.3     9.2 0.00027   18.2   1.3   31   62-92      3-33  (87)
 33 >1x4n_A FAR upstream element b  45.1     8.8 0.00026   18.3   1.2   31   62-92     15-45  (92)
 34 >2p2r_A Poly(RC)-binding prote  44.4     9.1 0.00027   18.2   1.1   30   63-92      6-35  (76)
 35 >2jzx_A Poly(RC)-binding prote  43.4     9.6 0.00028   18.1   1.1   30   64-93     10-39  (79)
 36 >1wvn_A Poly(RC)-binding prote  43.0      14 0.00041   17.2   1.9   29   64-92      8-36  (82)
 37 >2jvz_A KH type-splicing, FAR   43.0      12 0.00035   17.6   1.5   32   61-92      9-40  (83)
 38 >2jzx_A Poly(RC)-binding prote  42.1     8.2 0.00024   18.5   0.6   30   63-92      6-35  (81)
 39 >1j4w_A FUSE binding protein;   40.3      11 0.00034   17.7   1.1   29   64-92      5-33  (88)
 40 >3ej9_B Beta-subunit of trans-  39.4     9.7 0.00029   18.1   0.7   17  150-167    49-65  (70)
 41 >1we8_A Tudor and KH domain co  39.4      13 0.00039   17.3   1.3   30   63-92     16-45  (104)
 42 >2ba0_A Archeal exosome RNA bi  37.7      11 0.00033   17.7   0.7   61   65-128     4-66  (94)
 43 >1x4m_A FAR upstream element b  37.6      11 0.00031   17.9   0.6   30   63-92     16-45  (94)
 44 >2cte_A Vigilin; K homology ty  37.5      11 0.00033   17.8   0.7   30   64-93     19-48  (94)
 45 >2je6_I RRP4, exosome complex   37.5     9.3 0.00027   18.2   0.3   64   64-131     2-68  (96)
 46 >2dgr_A Ring finger and KH dom  36.1     7.9 0.00023   18.6  -0.2   30   64-93     12-41  (83)
 47 >2cpq_A FragIle X mental retar  34.2     7.1 0.00021   18.9  -0.7   32   61-92     14-45  (91)
 48 >1j5k_A Heterogeneous nuclear   33.7      17  0.0005   16.7   1.1   29   64-92     16-44  (89)
 49 >2ctj_A Vigilin; K homology ty  33.1      14  0.0004   17.2   0.6   31   62-92     17-47  (95)
 50 >1vig_A Vigilin; RNA-binding p  32.7      18 0.00053   16.5   1.1   30   64-93      7-36  (71)
 51 >2ctl_A Vigilin; K homology ty  32.7      16 0.00047   16.9   0.9   31   63-93     18-48  (97)
 52 >3krm_A Insulin-like growth fa  31.6      27 0.00078   15.6   1.9   24   68-91      9-32  (163)
 53 >2ctm_A Vigilin; K homology ty  30.4      17  0.0005   16.7   0.7   30   64-93     19-48  (95)
 54 >2ctf_A Vigilin; K homology ty  28.6      20 0.00059   16.3   0.8   28   65-92     30-57  (102)
 55 >2anr_A Neuro-oncological vent  26.8      26 0.00077   15.6   1.1   28   65-92      9-36  (178)
 56 >1k7w_A Delta 2 crystallin; ey  25.2      45  0.0013   14.2   2.7   31  111-144     1-34  (56)
 57 >2a98_A Inositol 1,4,5-trispho  24.6      14 0.00042   17.1  -0.5   20    1-20     12-31  (152)
 58 >2gak_A Beta-1,6-N-acetylgluco  23.8      34 0.00099   15.0   1.2   26   19-44     46-71  (101)
 59 >2pt7_G HP1451, hypothetical p  23.8      48  0.0014   14.1   4.1   60   39-98      7-69  (80)
 60 >2jy9_A Putative tRNA hydrolas  21.8      35   0.001   14.9   1.0   24    2-25     27-50  (148)
 61 >2ctk_A Vigilin; K homology ty  20.6      24 0.00072   15.7   0.0   30   63-92     18-47  (104)
 62 >2gys_A Cytokine receptor comm  20.3      22 0.00066   16.0  -0.2   33  170-202     1-39  (98)

No 1  
>>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 2qal_C* 1p6g_C 1p87_C 2aw7_C 2avy_C 2i2u_C 2i2p_C* 2qan_C* 2qb9_C* 2qbb_C* 2qbd_C ... (C:110-233)
Probab=100.00  E-value=1.2e-40  Score=254.35  Aligned_cols=113  Identities=55%  Similarity=0.820  Sum_probs=104.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECEEEEEEE
Q ss_conf             53377879999999875963689999999985323885599997036786422215787525532452000030568999
Q gi|254780255|r  110 EINATLIAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRAHIDYGTAVA  189 (227)
Q Consensus       110 ~~~A~~iA~~Ia~~Lekr~~fRr~~k~~i~~~~k~g~kGikI~isGRl~G~e~Ar~e~~~~G~vpl~t~~a~idy~~~~a  189 (227)
                      ++||+++|++||.+||++++||++++++++++|++|++|+||+|||||+|+||||+|||++|++||||++++|||++.+|
T Consensus         1 el~A~~ia~~Ia~~Le~~~~frr~~~~~i~~~~~~gakGikI~isGRl~G~erAr~e~~~~G~ipl~t~~a~Idy~~~~a   80 (124)
T 3i1m_C            1 ELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRADIDYNTSEA   80 (124)
T ss_dssp             GGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTTCCSEEEEEEESSTTSCSSCCCCBCCEECCCTTCSSSEEEEEEECC
T ss_pred             CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHEEHHHCCCCCCCCCCCEEEEEEEEE
T ss_conf             22478999999999972640899999999999875995699997355574132203321108888888362689999999


Q ss_pred             EECCCEEEEEEEEEECCCCCCCCCCCCCCHHHH
Q ss_conf             953826679999732885377211343320233
Q gi|254780255|r  190 ETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRV  222 (227)
Q Consensus       190 ~T~~G~~GvKVwi~~~~~~~~~~~~~~~~~~~~  222 (227)
                      +|+||+|||||||+++++.++........+...
T Consensus        81 ~tk~Gv~GIKVwI~~~~~~~~~~~~~~~~~~~~  113 (124)
T 3i1m_C           81 HTTYGVIGVKVWIFKGEILGGMAAVEQPEKPAA  113 (124)
T ss_dssp             EETTEECEEEEEEEEECC---------------
T ss_pred             ECCCEEEEEEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             858575899999977862687333347556556


No 2  
>>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 2qal_C* 1p6g_C 1p87_C 2aw7_C 2avy_C 2i2u_C 2i2p_C* 2qan_C* 2qb9_C* 2qbb_C* 2qbd_C ... (C:1-109)
Probab=100.00  E-value=3.4e-40  Score=251.78  Aligned_cols=109  Identities=44%  Similarity=0.821  Sum_probs=108.4

Q ss_pred             CCCCCCCCEEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf             98645785266503206215670273125799998999999999877422642215532588518999973741001356
Q gi|254780255|r    1 MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTHKNCRIIVYSARPGLIIGKK   80 (227)
Q Consensus         1 MGQKvnP~g~RLg~~k~w~S~Wfa~~k~Y~~~L~eD~~IR~fi~k~l~~agis~i~I~Rt~~~i~I~I~~~kP~~iiGkk   80 (227)
                      |||||||+|||||++++|+|.|||++++|+++|+||++||+||.+++..|||++|+|+|+++.+.|+||+++|+++||++
T Consensus         1 MGQKvnP~gfRlgi~~~~~s~W~a~~k~y~~~l~eD~~IR~~i~k~~~~agis~IeI~R~~~~i~I~I~~~rPg~iIG~~   80 (109)
T 3i1m_C            1 MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKK   80 (109)
T ss_dssp             -CCCCCTTTTTTTSSCCCSBCCCCCHHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEBCCCSSCBCCEEEESCHHHHHCST
T ss_pred             CCCCCCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCCHHCCCC
T ss_conf             97988980521232579840787895414799999999999999986551221045402665369999962441211530


Q ss_pred             CHHHHHHHHHHHCCCCCEEEEEEEEECCC
Q ss_conf             53489989876403587057879981375
Q gi|254780255|r   81 GTDIEKIRKKLSNMTNSEIHLSVNEVPKP  109 (227)
Q Consensus        81 g~~i~~l~~~L~~~~~~~v~i~v~ei~~p  109 (227)
                      |.++++|++.|+++++++++|+|.||++|
T Consensus        81 g~~i~~l~~~l~k~~~~~~~i~v~evk~P  109 (109)
T 3i1m_C           81 GEDVEKLRKVVADIAGVPAQINIAEVRKP  109 (109)
T ss_dssp             THHHHHHHHHHHHHHTSCBCCEEEECSSG
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEEEECCC
T ss_conf             57799999887764276326999972383


No 3  
>>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ... (C:110-239)
Probab=100.00  E-value=1.7e-39  Score=247.68  Aligned_cols=109  Identities=50%  Similarity=0.770  Sum_probs=104.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECEEEEEEE
Q ss_conf             53377879999999875963689999999985323885599997036786422215787525532452000030568999
Q gi|254780255|r  110 EINATLIAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRAHIDYGTAVA  189 (227)
Q Consensus       110 ~~~A~~iA~~Ia~~Lekr~~fRr~~k~~i~~~~k~g~kGikI~isGRl~G~e~Ar~e~~~~G~vpl~t~~a~idy~~~~a  189 (227)
                      ++||+++|++||.+||++++||++++++++++|++|++||+|+|||||+|++|||++++.+|.+||||++++|||++.+|
T Consensus         1 el~a~~iA~~Ia~~Le~~~~frr~~~~~i~~~m~~g~~GikI~isGRl~g~~~Ar~~~~~~G~ipl~~~~~~Idya~~~a   80 (130)
T 2vqe_C            1 NLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEWAAQGRVPLHTLRANIDYGFALA   80 (130)
T ss_dssp             TSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSSCSEEEEEECSCTTTCSSCCCBCCEEECCCTTCGGGCEEEEEECC
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHCCEEEEEECCCCCCCCCCCEEEEEEEEE
T ss_conf             42137999999999972420689999999875325830899997257750211157887637555666543178899999


Q ss_pred             EECCCEEEEEEEEEECCCCCCCCCCCCCC
Q ss_conf             95382667999973288537721134332
Q gi|254780255|r  190 ETAYGSCGIKVYVSLRDEVSDSDSTIPAA  218 (227)
Q Consensus       190 ~T~~G~~GvKVwi~~~~~~~~~~~~~~~~  218 (227)
                      +|+||+|||||||++++..+++.......
T Consensus        81 ~tk~GviGIKVwI~~~~~~~~~~~~~~~~  109 (130)
T 2vqe_C           81 RTTYGVLGVKAYIFLGEVIGGQKPKARPE  109 (130)
T ss_dssp             BCSSCBCCEEEEEECCCC-----------
T ss_pred             ECCCEEEEEEEEEECCCCCCCCCCCCCCC
T ss_conf             86867089999998787178877555765


No 4  
>>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ... (C:1-109)
Probab=100.00  E-value=1.2e-39  Score=248.66  Aligned_cols=109  Identities=43%  Similarity=0.786  Sum_probs=108.4

Q ss_pred             CCCCCCCCEEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf             98645785266503206215670273125799998999999999877422642215532588518999973741001356
Q gi|254780255|r    1 MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTHKNCRIIVYSARPGLIIGKK   80 (227)
Q Consensus         1 MGQKvnP~g~RLg~~k~w~S~Wfa~~k~Y~~~L~eD~~IR~fi~k~l~~agis~i~I~Rt~~~i~I~I~~~kP~~iiGkk   80 (227)
                      |||||||+|||||++++|+|.|||++++|+++|+||++||+||.+++..+|+++|+|+|+++.+.|+||+++|+++||++
T Consensus         1 MGQKvnP~g~Rlgi~~~~~S~Wfa~~k~y~~~l~eD~~IR~~l~k~~~~a~is~I~I~R~~~~~~I~I~~~rpg~iIG~~   80 (109)
T 2vqe_C            1 MGNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRG   80 (109)
T ss_dssp             -CCCCCTTTTTTTSSCCCSBCCCCCTTTHHHHHHHHHHHHHHHHTTTTTTCEEEECBCBSSSCBCCEEEESCGGGTSCSS
T ss_pred             CCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCCEEECCC
T ss_conf             97988980621254689852484880466799999999999999752341335058872267459999946876232035


Q ss_pred             CHHHHHHHHHHHCCCCCEEEEEEEEECCC
Q ss_conf             53489989876403587057879981375
Q gi|254780255|r   81 GTDIEKIRKKLSNMTNSEIHLSVNEVPKP  109 (227)
Q Consensus        81 g~~i~~l~~~L~~~~~~~v~i~v~ei~~p  109 (227)
                      |+++++|++.|+++++++++|+|.||++|
T Consensus        81 g~~i~~l~~~L~k~~~k~~~i~v~ev~~P  109 (109)
T 2vqe_C           81 GERIRVLREELAKLTGKNVALNVQEVQNP  109 (109)
T ss_dssp             SSHHHHHHHHHHHHSTTCCCCEEEECSCT
T ss_pred             CHHHHHHHHHHHHHHCCCEEEEEEEEECC
T ss_conf             42578899898887099749999997154


No 5  
>>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_C (c:95-243)
Probab=100.00  E-value=3.3e-39  Score=246.08  Aligned_cols=102  Identities=24%  Similarity=0.293  Sum_probs=97.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEECCCCC--CCEEEECEEEEE
Q ss_conf             533778799999998759636899999999853238855999970367864222157875255324--520000305689
Q gi|254780255|r  110 EINATLIAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPL--QTLRAHIDYGTA  187 (227)
Q Consensus       110 ~~~A~~iA~~Ia~~Lekr~~fRr~~k~~i~~~~k~g~kGikI~isGRl~G~e~Ar~e~~~~G~vpl--~t~~a~idy~~~  187 (227)
                      .|||.++|++||++||+|++|||+++++++.+|++||+||+|+|||||+| ||||+|||++|+|||  ||++++|||++.
T Consensus         1 ~L~A~~iA~~Ia~~Le~~~~fRra~~~~i~~~m~aga~GikI~isGRl~g-erAr~e~~~~G~vplsg~t~~~~Idy~~~   79 (149)
T 2zkq_c            1 GLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRG-QRAKSMKFVDGLMIHSGDPVNYYVDTAVR   79 (149)
T ss_dssp             GGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHSSCSEEEEEECSSGGG-SSCCCBCCEEESSHHHHSSTTCCEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH-HHHHHHHHHCCCCCCCCCHHHHHEEEEEE
T ss_conf             02047999999999970603789999999998765986459999504556-77657787558565688603530116899


Q ss_pred             EEEECCCEEEEEEEEEECCCCCCCC
Q ss_conf             9995382667999973288537721
Q gi|254780255|r  188 VAETAYGSCGIKVYVSLRDEVSDSD  212 (227)
Q Consensus       188 ~a~T~~G~~GvKVwi~~~~~~~~~~  212 (227)
                      +|+|+||+||||||||++++..+..
T Consensus        80 ~a~t~~GviGVKVwI~~~~~~~~~~  104 (149)
T 2zkq_c           80 HVLLRQGVLGIKVKIMLPWDPTGKI  104 (149)
T ss_dssp             CCCCSSCCCCEEEEEECCCC-----
T ss_pred             EEECCEEEEEEEEEEECCCCCCCCC
T ss_conf             9875658899999995276767764


No 6  
>>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (C:1-121)
Probab=100.00  E-value=1e-38  Score=243.20  Aligned_cols=110  Identities=30%  Similarity=0.567  Sum_probs=105.1

Q ss_pred             CCCCCCCCEEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH--------HCCCCCEEEEECCCCCEEEEEECC
Q ss_conf             986457852665032062156702731257999989999999998774--------226422155325885189999737
Q gi|254780255|r    1 MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLK--------QAGVAKILIERTHKNCRIIVYSAR   72 (227)
Q Consensus         1 MGQKvnP~g~RLg~~k~w~S~Wfa~~k~Y~~~L~eD~~IR~fi~k~l~--------~agis~i~I~Rt~~~i~I~I~~~k   72 (227)
                      |||||||+|||||++++|+|.|||++++|+++|+||++||+||.++|.        .||+++|+|+|+++.+.|+||+++
T Consensus         1 MGqKvnP~gfRlgi~~~~~S~W~a~~~~y~~~l~ED~~IR~~i~k~l~~~~~~~~~~agi~~I~I~R~~~~i~I~I~~ar   80 (121)
T 3bbn_C            1 MGQKINPLGFRLGTTQSHYSLWFSQPKNYAEGLQEDQKIRDCIKNYVQKNTKTSSGVEGIARIEIQKRIDLIQVIIHMGF   80 (121)
T ss_dssp             CCCCCCTTTSSTTTTSCCSBCCCCCTTSSHHHHHHHHHHHHHHHSCCSSSSCCTTTTTCEEEEEBCBSSSCBCCEEEESC
T ss_pred             CCCCCCCCCEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEECC
T ss_conf             97988980240144688423795781143698875799999999887888776665402002431135566523788513


Q ss_pred             CCCCCCCCCHHHHHHHHHHHCCCC---CEEEEEEEEECCCC
Q ss_conf             410013565348998987640358---70578799813755
Q gi|254780255|r   73 PGLIIGKKGTDIEKIRKKLSNMTN---SEIHLSVNEVPKPE  110 (227)
Q Consensus        73 P~~iiGkkg~~i~~l~~~L~~~~~---~~v~i~v~ei~~p~  110 (227)
                      ||++||++|+.+++|++.|++.++   .++.|+|.||++|+
T Consensus        81 pg~vIG~~G~~i~~L~~~L~k~~~~~~~~v~I~v~eV~~Py  121 (121)
T 3bbn_C           81 PKLLIENRPQGVEDLKINVQKELNCVNRKLNIAITRIAKPY  121 (121)
T ss_dssp             TTTTSCSSSCTTHHHHHHHHHHSCSSCCCCCCCEEECSCTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHH
T ss_conf             32110123404899999999873214760589987522615


No 7  
>>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (C:122-218)
Probab=100.00  E-value=1.8e-38  Score=241.81  Aligned_cols=97  Identities=41%  Similarity=0.705  Sum_probs=94.8

Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEECEEEEEEEE
Q ss_conf             33778799999998759636899999999853238855999970367864222157875255324520000305689999
Q gi|254780255|r  111 INATLIAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRAHIDYGTAVAE  190 (227)
Q Consensus       111 ~~A~~iA~~Ia~~Lekr~~fRr~~k~~i~~~~k~g~kGikI~isGRl~G~e~Ar~e~~~~G~vpl~t~~a~idy~~~~a~  190 (227)
                      .||+++|++||.+||+|++||++++++++++|++|++|+||+|||||+|+||||+|||++|++||||++++|||++++|.
T Consensus         1 ~~A~~iA~~Ia~~Le~~~~frr~~~~~i~~~~~~g~kGikI~isGRl~G~erAr~~~~~~G~i~l~~~~~~Idy~~~~a~   80 (97)
T 3bbn_C            1 GDPNILAEFIAGQLKSRVSFRKAMKKAIELTEQADTKGIQIQIAGRIDGKEIARIEWIREGRVPLQTIRAKIDYCAYTVR   80 (97)
T ss_dssp             TSHHHHHHHSTTTTTTTCCHHHHHTHHHHHHHTTCCSEEEEECCSCCTTCSSCCCCEEEEECCCSSCSTTCCBCCEEECC
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHCEEEEEECEEECCCCCCCCEEEEEEEE
T ss_conf             66677899999999723488899999987764248438999995145740001158888440067663234379999997


Q ss_pred             ECCCEEEEEEEEEECCC
Q ss_conf             53826679999732885
Q gi|254780255|r  191 TAYGSCGIKVYVSLRDE  207 (227)
Q Consensus       191 T~~G~~GvKVwi~~~~~  207 (227)
                      |+||+|||||||+++|.
T Consensus        81 tk~Gv~GVKVwI~~~~k   97 (97)
T 3bbn_C           81 TIYGVLGIKIWIFMGEE   97 (97)
T ss_dssp             CSSCCCEEEEEEECCC-
T ss_pred             CCCCEEEEEEEEECCCC
T ss_conf             48840899999984899


No 8  
>>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_C (c:1-94)
Probab=99.89  E-value=9.5e-25  Score=162.54  Aligned_cols=92  Identities=20%  Similarity=0.279  Sum_probs=87.0

Q ss_pred             EEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf             56702731257999989999999998774226422155325885189999737410013565348998987640358705
Q gi|254780255|r   20 SRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEI   99 (227)
Q Consensus        20 S~Wfa~~k~Y~~~L~eD~~IR~fi~k~l~~agis~i~I~Rt~~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~~~~~~v   99 (227)
                      |.|||++++|+++++||.+||+||.++|.++|||+|+|+|+++.+.|+||+++||++||++|.++++|++.|++.+    
T Consensus         2 S~W~a~~k~y~~~~~eD~~IR~~i~k~l~~agis~I~I~R~~~~i~I~I~tarPg~iIG~~g~~i~~l~~~L~kev----   77 (94)
T 2zkq_c            2 AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRF----   77 (94)
T ss_dssp             CBCCCCTTTHHHHHHHHHHHHHHHHHHTCTTTEEEEECBEETTEECCEEEESCHHHHHCGGGHHHHHHHHHHHHHS----
T ss_pred             CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHH----
T ss_conf             4267666699980019999999999988767705499998789389999948986140655278999999999984----


Q ss_pred             EEEEEEECCCCCCHHHHHHHHHH
Q ss_conf             78799813755337787999999
Q gi|254780255|r  100 HLSVNEVPKPEINATLIAQSIAQ  122 (227)
Q Consensus       100 ~i~v~ei~~p~~~A~~iA~~Ia~  122 (227)
                             ++|+++|+++|++||+
T Consensus        78 -------~~p~~~a~lvA~~IA~   93 (94)
T 2zkq_c           78 -------GFPEGSVELYAEKVAT   93 (94)
T ss_dssp             -------CTTTCCCCCEEEECSC
T ss_pred             -------CCCCCEEEEEEEECCC
T ss_conf             -------6678627999998168


No 9  
>>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} (A:)
Probab=99.82  E-value=3.2e-22  Score=147.95  Aligned_cols=86  Identities=20%  Similarity=0.297  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCC
Q ss_conf             99899999999987742264221553258851899997374100135653489989876403587057879981375533
Q gi|254780255|r   33 LHEDLKIREYLQCHLKQAGVAKILIERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEIN  112 (227)
Q Consensus        33 L~eD~~IR~fi~k~l~~agis~i~I~Rt~~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~~~~~~v~i~v~ei~~p~~~  112 (227)
                      ++||++||+||.++|.+|||++|+|+|+++.+.|.||+++|+++||++|.++++|++.|++           ++++|+++
T Consensus         6 ~~ed~~Ir~~l~k~~~~aGis~IeI~Rt~~~i~I~I~t~kPg~iIG~~g~~i~~l~~~l~k-----------ev~~P~~~   74 (92)
T 1wh9_A            6 SGFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQK-----------RFGFPEGS   74 (92)
T ss_dssp             CSHHHHHHHHHHHHTTTTTEEEEEEEECSSCEEEEEEESCHHHHHCGGGHHHHHHHHHHHH-----------HHCCCTTS
T ss_pred             CCHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCEECCCCHHHHHHHHHHHH-----------HHCCCCCE
T ss_conf             4189999999999887678355999987991899999689861652475309999999999-----------96899970


Q ss_pred             HHHHHHHHHHHHHCCCH
Q ss_conf             77879999999875963
Q gi|254780255|r  113 ATLIAQSIAQQLERRVV  129 (227)
Q Consensus       113 A~~iA~~Ia~~Lekr~~  129 (227)
                      |+++|++||.|||+|++
T Consensus        75 a~liA~~IA~qLe~Rva   91 (92)
T 1wh9_A           75 VELYAEKVATRGSGPSS   91 (92)
T ss_dssp             EEEEEEECCCSCCCSCC
T ss_pred             EEEEEEEEECCCCCCCC
T ss_conf             89998743025778556


No 10 
>>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} (A:182-284)
Probab=96.83  E-value=0.006  Score=36.59  Aligned_cols=79  Identities=28%  Similarity=0.396  Sum_probs=55.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHC--CCCCEEEEEC---CCC---CEEEEEECCC---CCCCCCCCHHHHHH----HHHH
Q ss_conf             125799998999999999877422--6422155325---885---1899997374---10013565348998----9876
Q gi|254780255|r   27 SEYGALLHEDLKIREYLQCHLKQA--GVAKILIERT---HKN---CRIIVYSARP---GLIIGKKGTDIEKI----RKKL   91 (227)
Q Consensus        27 k~Y~~~L~eD~~IR~fi~k~l~~a--gis~i~I~Rt---~~~---i~I~I~~~kP---~~iiGkkg~~i~~l----~~~L   91 (227)
                      .....++.|  .||+.+..+++..  .-..++|++-   .++   +...|++.++   +++||++|..++++    +..|
T Consensus         7 ~~~~~~i~E--iIReki~~~l~~EiPy~~~v~ie~~~~~~~~~l~I~~~I~v~k~sqk~ivIGk~G~~ik~I~~~ar~~L   84 (103)
T 1ega_A            7 RSQRFMASE--IIREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDM   84 (103)
T ss_dssp             CSHHHHHHH--HHHHHHHHHHGGGCCTTEEEEEEEEECCSSCSEEEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHH--HHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEECCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             666675788--858888753564463466899999997489957999999997689457998799725899999999999


Q ss_pred             HCCCCCEEEEEE-EEEC
Q ss_conf             403587057879-9813
Q gi|254780255|r   92 SNMTNSEIHLSV-NEVP  107 (227)
Q Consensus        92 ~~~~~~~v~i~v-~ei~  107 (227)
                      +++|+.++.+++ .+++
T Consensus        85 ~~l~~~~V~L~L~Vkv~  101 (103)
T 1ega_A           85 QEMFEAPVHLELWVKVK  101 (103)
T ss_dssp             HHHTTSCEEEEEEEEET
T ss_pred             HHHHCCCEEEEEEEEEC
T ss_conf             99849986999999967


No 11 
>>3gku_A Probable RNA-binding protein; APC21302, structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940} (A:61-140)
Probab=95.43  E-value=0.01  Score=35.27  Aligned_cols=59  Identities=25%  Similarity=0.435  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHCCCC-CEEEEE--CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             9999999877422642-215532--5885189999737410013565348998987640358
Q gi|254780255|r   38 KIREYLQCHLKQAGVA-KILIER--THKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTN   96 (227)
Q Consensus        38 ~IR~fi~k~l~~agis-~i~I~R--t~~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~~~~   96 (227)
                      .+++|++..+...|+. .+.|.-  ..+.+.+.|....++++|||+|+.++.|+..++...+
T Consensus         5 ~~~~~L~~il~~mg~~~~v~i~~~~~~~~i~i~i~g~~~g~LIGk~G~tL~ALQ~L~~~~~~   66 (80)
T 3gku_A            5 KAIEFLEQVFDAXNXAVDISVEYNETEKEXNVNLKGDDXGILIGKRGQTLDSLQYLVSLVVN   66 (80)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEEEETTTTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             66899999999769964899999548538999943750543226970678999999999998


No 12 
>>1wf3_A GTP-binding protein; GTPase, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus HB8} (A:180-301)
Probab=90.79  E-value=1.1  Score=23.55  Aligned_cols=82  Identities=21%  Similarity=0.340  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHH-----CCCCCEEEEECCCC---CEEEEEECCCC---CCCCCCCHHHHHHH----HHHHCCCCCEEEEE
Q ss_conf             999999987742-----26422155325885---18999973741---00135653489989----87640358705787
Q gi|254780255|r   38 KIREYLQCHLKQ-----AGVAKILIERTHKN---CRIIVYSARPG---LIIGKKGTDIEKIR----KKLSNMTNSEIHLS  102 (227)
Q Consensus        38 ~IR~fi~k~l~~-----agis~i~I~Rt~~~---i~I~I~~~kP~---~iiGkkg~~i~~l~----~~L~~~~~~~v~i~  102 (227)
                      .||+.+..+|+.     ..+.-...+...++   +...|++.++.   ++||++|..|+++.    ..|+++|+.++.+.
T Consensus        17 iIREk~l~~l~~EiPy~~~v~i~~~~~~~~g~l~I~~~I~v~r~sqk~IviGk~G~~Ik~I~~~ar~~Le~~~~~kV~L~   96 (122)
T 1wf3_A           17 ILREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLD   96 (122)
T ss_dssp             HHHHHHHHTCCTTHHHHCEEEEEEEEEETTTEEEEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf             99999987513335665518987527703885389999997368853389917841699999999999999968986999


Q ss_pred             --EEEECCCCCCHHHHHHH
Q ss_conf             --99813755337787999
Q gi|254780255|r  103 --VNEVPKPEINATLIAQS  119 (227)
Q Consensus       103 --v~ei~~p~~~A~~iA~~  119 (227)
                        |.--+++..++..+.++
T Consensus        97 L~VkV~~~W~~~~~~l~~~  115 (122)
T 1wf3_A           97 LEVKVYPDWRKDPEALREL  115 (122)
T ss_dssp             EEEEECTTGGGCHHHHHHH
T ss_pred             EEEEECCCCCCCHHHHHHC
T ss_conf             9999888846598999867


No 13 
>>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome assembly, GTP-binding; HET: GNP; 1.90A {Aquifex aeolicus} (A:191-294)
Probab=84.20  E-value=2.8  Score=21.17  Aligned_cols=67  Identities=21%  Similarity=0.284  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHC--CCCCEEEE---EC--CCC---CEEEEEECCCC---CCCCCCCHHHHHHH----HHHHCCCCCEEE
Q ss_conf             9999999877422--64221553---25--885---18999973741---00135653489989----876403587057
Q gi|254780255|r   38 KIREYLQCHLKQA--GVAKILIE---RT--HKN---CRIIVYSARPG---LIIGKKGTDIEKIR----KKLSNMTNSEIH  100 (227)
Q Consensus        38 ~IR~fi~k~l~~a--gis~i~I~---Rt--~~~---i~I~I~~~kP~---~iiGkkg~~i~~l~----~~L~~~~~~~v~  100 (227)
                      .||+-+..+|++.  .-..++|+   ..  .++   +...|++.++.   ++||++|..|+++.    +.|+++|+.++.
T Consensus        14 iIRekll~~l~~EiPy~~~v~i~~~~~~~~~~~~~~I~~~I~v~k~sqk~ivIGk~G~~Ik~I~~~ar~~L~~~~~~~V~   93 (104)
T 3iev_A           14 IVREKAMMLTREEVPTSIAVKINEIKPGDANPNMLVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVY   93 (104)
T ss_dssp             HHHHHHHHTCCTTHHHHCEEEEEEEEECSSCTTSEEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEE
T ss_pred             HHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEEEEEECCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf             88778999715356675077524303335787449999999854504021264787167999999999999998599869


Q ss_pred             EEEE
Q ss_conf             8799
Q gi|254780255|r  101 LSVN  104 (227)
Q Consensus       101 i~v~  104 (227)
                      +.+.
T Consensus        94 L~L~   97 (104)
T 3iev_A           94 LELW   97 (104)
T ss_dssp             EEEE
T ss_pred             EEEE
T ss_conf             9999


No 14 
>>2cxc_A NUSA; transcription termination, RNA binding protein, KH domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix K1} PDB: 2cy1_A (A:1-75)
Probab=82.66  E-value=1.5  Score=22.83  Aligned_cols=56  Identities=18%  Similarity=0.349  Sum_probs=46.4

Q ss_pred             HHHHHHHH--HHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99999999--877422642215532588518999973741001356534899898764
Q gi|254780255|r   37 LKIREYLQ--CHLKQAGVAKILIERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        37 ~~IR~fi~--k~l~~agis~i~I~Rt~~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      -...+|+.  +-+..+.+.+|.|....+.+.+.+-...-+..||++|.+++...+.+.
T Consensus         9 ~d~~~~I~l~nal~pa~v~~v~ide~~~~~~vvV~~~~~~~AIGk~G~Nvkla~~L~g   66 (75)
T 2cxc_A            9 LEELRYISVFHSITGVTAYRCIVDEENNRLIFLVSEGEAGRAIGRGGRLIKLLREALG   66 (75)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEEEEGGGTEEEEEECTTCHHHHHCGGGHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCCHHHHHHCCCHHHHHHHHHHHC
T ss_conf             9998999999998598537889837998899998736665861857188899999719


No 15 
>>2cxc_A NUSA; transcription termination, RNA binding protein, KH domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix K1} PDB: 2cy1_A (A:76-144)
Probab=82.00  E-value=1.4  Score=22.89  Aligned_cols=58  Identities=19%  Similarity=0.285  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHCCCCCEEEEECCCC--CEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             9999998774226422155325885--189999737410013565348998987640358
Q gi|254780255|r   39 IREYLQCHLKQAGVAKILIERTHKN--CRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTN   96 (227)
Q Consensus        39 IR~fi~k~l~~agis~i~I~Rt~~~--i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~~~~   96 (227)
                      ..+|+.+-|..+.+..+.|....+.  ..|.+-...-+..||++|.+++...+.+...++
T Consensus         3 ~~~fi~Nal~Pa~v~~V~i~~~~~~~~~~v~V~~~~~~~AIGk~G~Nv~lA~~L~~~~id   62 (69)
T 2cxc_A            3 LERIVKNLFPGVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFG   62 (69)
T ss_dssp             HHHHHHHHSTTSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHCCCCCCCCEEEEEEEECCCCEEEEEECCHHHEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf             788731146865146789861478469999739787200437897779999999875459


No 16 
>>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} (A:158-251)
Probab=76.99  E-value=2.6  Score=21.41  Aligned_cols=54  Identities=20%  Similarity=0.340  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHCCCCCEEE-EECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             9999998774226422155-32588518999973741001356534899898764
Q gi|254780255|r   39 IREYLQCHLKQAGVAKILI-ERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        39 IR~fi~k~l~~agis~i~I-~Rt~~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      ..+|+.+-|..+-+.+|.| ....+...|.+--..-++.|||+|.+++-..+.+.
T Consensus         3 ~~~fi~nal~PA~V~~V~i~~e~~~~~~v~V~~~~ls~AIGk~G~NvrLAs~Ltg   57 (94)
T 2asb_A            3 PARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTG   57 (94)
T ss_dssp             HHHHHHHHTTTSCCSEEEEEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHS
T ss_pred             HHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCHHHHHHHCCCCEEHHHHHHHHC
T ss_conf             8999985678854069996236762799996841432333468750999999779


No 17 
>>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} (A:281-366)
Probab=75.90  E-value=2.8  Score=21.17  Aligned_cols=53  Identities=21%  Similarity=0.344  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHCCCCCEEE-EECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf             9999998774226422155-3258851899997374100135653489989876
Q gi|254780255|r   39 IREYLQCHLKQAGVAKILI-ERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKL   91 (227)
Q Consensus        39 IR~fi~k~l~~agis~i~I-~Rt~~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L   91 (227)
                      ..+|+.+-|..+-+.+|.| ....+...|++-...-++.||++|.+++--.+.+
T Consensus         3 ~~~fi~nal~PA~V~~V~i~~e~~~~~~V~V~~~~ls~AIGk~G~NvrLAs~Lt   56 (86)
T 1k0r_A            3 PARFVANALSPAKVVSVSVIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLT   56 (86)
T ss_dssp             HHHHHHHHTTTSCCSEEEEEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCEEEEEEECCCCCEEEEEECHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             999999837976023899875888779999881353576379982699999987


No 18 
>>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} (A:1-79)
Probab=75.25  E-value=5.5  Score=19.51  Aligned_cols=70  Identities=13%  Similarity=0.144  Sum_probs=44.5

Q ss_pred             CCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCC---CEEEEEEEEEC-CCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf             5189999737410013565348998987640358---70578799813-7553377879999999875963689
Q gi|254780255|r   63 NCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTN---SEIHLSVNEVP-KPEINATLIAQSIAQQLERRVVFRR  132 (227)
Q Consensus        63 ~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~~~~---~~v~i~v~ei~-~p~~~A~~iA~~Ia~~Lekr~~fRr  132 (227)
                      .+++.+...+-+.+||++|.++++|++.-.-...   .+-.+.+.-.. ..-..|.-..+.+...++..-.+-.
T Consensus         5 ~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~v~I~g~~~~~v~~A~~~I~~li~e~~~g~~~ev   78 (79)
T 1tua_A            5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEK   78 (79)
T ss_dssp             CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHH
T ss_pred             EEEEECCHHHCCCCCCCCCHHHHHHHHHHCCEEEEECCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHH
T ss_conf             49988888873226688727699999998985899526554313325654320221125778999985123566


No 19 
>>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} (P:277-344)
Probab=74.45  E-value=3  Score=21.05  Aligned_cols=54  Identities=24%  Similarity=0.319  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHCCCCCEEEE-ECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             99999987742264221553-2588518999973741001356534899898764
Q gi|254780255|r   39 IREYLQCHLKQAGVAKILIE-RTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        39 IR~fi~k~l~~agis~i~I~-Rt~~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      ..+|+.+-|..+.+..+.+. ...+...|.+--..-+..|||+|.+++--.+.+.
T Consensus         3 ~~~fi~nal~Pa~V~~V~i~~e~~~~~~v~V~~~~~s~AIGk~G~Nv~LAs~L~~   57 (68)
T 1hh2_P            3 PKQLIANALAPATVIEVEILDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTG   57 (68)
T ss_dssp             HHHHHHHHTCSSCCSEEEEEETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHS
T ss_pred             HHHHHHHHCCCCCCEEEEEECCCCCEEEEEECHHHHHHHHCCCCCHHHHHHHHHC
T ss_conf             9999998379763118998738898799998914503763799707999999879


No 20 
>>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii OT3} (A:1-109)
Probab=64.64  E-value=7.7  Score=18.66  Aligned_cols=71  Identities=21%  Similarity=0.285  Sum_probs=43.8

Q ss_pred             CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCC---CC--EEEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             8518999973741001356534899898764035---87--057879981375533778799999998759636899
Q gi|254780255|r   62 KNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMT---NS--EIHLSVNEVPKPEINATLIAQSIAQQLERRVVFRRA  133 (227)
Q Consensus        62 ~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~~~---~~--~v~i~v~ei~~p~~~A~~iA~~Ia~~Lekr~~fRr~  133 (227)
                      ....|.|....-|.|||++|..|++|++.-.-..   ..  .....+..+.- ..++.-.|..+..++.+...+.+|
T Consensus        34 ~~~~i~Ip~~~~g~iIGk~G~~Ik~I~~~tg~~I~i~~~~~~~~~r~v~i~G-~~~~v~~a~~~I~~~i~~~~~~~a  109 (109)
T 2e3u_A           34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETE-DPLAVWKARDIVLAIGRGFSPERA  109 (109)
T ss_dssp             CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTTTCEEEEEECTTCC-SHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             CCEEEECCHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCEECCC-CHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             4379877768712300787488999999969774311456754554200255-148899889999999826687678


No 21 
>>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} (A:89-174)
Probab=58.46  E-value=5.5  Score=19.48  Aligned_cols=32  Identities=34%  Similarity=0.566  Sum_probs=26.3

Q ss_pred             CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             88518999973741001356534899898764
Q gi|254780255|r   61 HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        61 ~~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      +....+.|-...-|.|||++|..|++|++.-.
T Consensus        15 ~~~~~i~Ip~~~vg~iIGk~G~~Ik~I~~~tg   46 (86)
T 1j4w_A           15 LQEFNFIVPTGKTGLIIGKGGETIKSISQQSG   46 (86)
T ss_dssp             -CEEEEEEETTTHHHHHCGGGHHHHHHHHHHC
T ss_pred             CCCEEEEECHHHHHHEECCCCCHHHHHHHHHC
T ss_conf             64269998878752437899957999999739


No 22 
>>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif; 2.00A {Homo sapiens} (A:)
Probab=55.81  E-value=6.8  Score=18.96  Aligned_cols=30  Identities=20%  Similarity=0.268  Sum_probs=25.4

Q ss_pred             CCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             518999973741001356534899898764
Q gi|254780255|r   63 NCRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        63 ~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      ...+.+-...-|.+||++|..|+++++...
T Consensus         4 ~~~i~vp~~~vg~iIG~~G~~I~~I~~~tg   33 (76)
T 1dtj_A            4 LVEMAVPENLVGAILGKGGKTLVEYQELTG   33 (76)
T ss_dssp             EEEEEEETTTHHHHHCSTTHHHHHHHHHHC
T ss_pred             EEEEEECHHHCCEEECCCCHHHHHHHHHCC
T ss_conf             999993988737359969725999998719


No 23 
>>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} (A:)
Probab=55.10  E-value=11  Score=17.83  Aligned_cols=30  Identities=30%  Similarity=0.500  Sum_probs=25.8

Q ss_pred             CCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             518999973741001356534899898764
Q gi|254780255|r   63 NCRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        63 ~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      ...+.+-...-+.|||++|..++++++.-.
T Consensus         8 ~~~i~vp~~~~~~iIG~~G~~i~~I~~~tg   37 (82)
T 1zzk_A            8 TTQVTIPKDLAGSIIGKGGQRIKQIRHESG   37 (82)
T ss_dssp             EEEEEEETTTGGGGTCGGGHHHHHHHHHHC
T ss_pred             EEEEEECHHHCCEEECCCCCHHHHHHHHCC
T ss_conf             899998867628159969823899997549


No 24 
>>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} (A:)
Probab=54.15  E-value=10  Score=18.00  Aligned_cols=30  Identities=20%  Similarity=0.492  Sum_probs=25.1

Q ss_pred             CCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             518999973741001356534899898764
Q gi|254780255|r   63 NCRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        63 ~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      .+.+.|-...-+.|||++|.+|++|++.-.
T Consensus         8 t~~i~Vp~~~~g~iIGk~G~~ik~I~~~tg   37 (107)
T 2hh2_A            8 EMTFSIPTHKCGLVIGRGGENVKAINQQTG   37 (107)
T ss_dssp             CEEEEEEGGGTTTTSTTTTCHHHHHHHHSS
T ss_pred             EEEEEECHHHCCEEECCCCHHHHHHHHHCC
T ss_conf             699998956502247939703888752437


No 25 
>>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein/DNA complex; 1.70A {Homo sapiens} (A:)
Probab=52.36  E-value=5.7  Score=19.40  Aligned_cols=31  Identities=32%  Similarity=0.551  Sum_probs=25.9

Q ss_pred             CCEEEEEECCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             5189999737410013565348998987640
Q gi|254780255|r   63 NCRIIVYSARPGLIIGKKGTDIEKIRKKLSN   93 (227)
Q Consensus        63 ~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~   93 (227)
                      ...+.+....-+.+||++|..|++|++.-.-
T Consensus         6 ~~~i~vp~~~~g~iIG~~G~~Ik~i~~~tg~   36 (73)
T 2axy_A            6 TIRLLXHGKEVGSIIGKKGESVKKXREESGA   36 (73)
T ss_dssp             EEEEEEEHHHHHHHHCGGGHHHHHHHHHHCC
T ss_pred             EEEEEECHHHCCEEECCCCCCHHHHHHHHCC
T ss_conf             9999988788195899998009999998699


No 26 
>>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I KH domains, fragIle X mental retardation protein, RNA binding protein; 1.90A {Homo sapiens} PDB: 2fmr_A (A:1-64)
Probab=51.39  E-value=3.7  Score=20.47  Aligned_cols=31  Identities=32%  Similarity=0.451  Sum_probs=24.7

Q ss_pred             CCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             8518999973741001356534899898764
Q gi|254780255|r   62 KNCRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        62 ~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      ....+.+-...-|.+||++|..|+++++.-.
T Consensus         4 ~t~~i~Vp~~~vg~iIGkgG~~I~~I~~~tg   34 (64)
T 2qnd_A            4 FHEQFIVREDLXGLAIGTHGANIQQARKVPG   34 (64)
T ss_dssp             CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT
T ss_pred             EEEEEEECHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf             0799999988986655876088999998567


No 27 
>>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} (A:)
Probab=49.37  E-value=10  Score=17.92  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=27.6

Q ss_pred             CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             885189999737410013565348998987640
Q gi|254780255|r   61 HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSN   93 (227)
Q Consensus        61 ~~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~   93 (227)
                      +....+.|-...-+.|||++|.+|++|++.-.-
T Consensus        10 ~~t~~i~Ip~~~vg~iIG~~G~~I~~i~~~tg~   42 (106)
T 2hh3_A           10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGV   42 (106)
T ss_dssp             --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTC
T ss_pred             CCEEEEEECHHHCCEEECCCCCCHHHHHHHCCE
T ss_conf             874999968676785799897327999875861


No 28 
>>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} (A:148-235)
Probab=48.70  E-value=18  Score=16.49  Aligned_cols=63  Identities=14%  Similarity=0.171  Sum_probs=40.0

Q ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE---EEEECCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf             189999737410013565348998987640358705787---9981375533778799999998759636
Q gi|254780255|r   64 CRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLS---VNEVPKPEINATLIAQSIAQQLERRVVF  130 (227)
Q Consensus        64 i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~~~~~~v~i~---v~ei~~p~~~A~~iA~~Ia~~Lekr~~f  130 (227)
                      ..|.+-...-+.+||++|+.+++|++.-.-    ++.+.   -..+..+..++.--|.....++-+...+
T Consensus         3 ~~i~Vp~~~~g~iIGk~G~~Ik~i~~~tg~----~I~i~~~~~v~i~~g~~~~v~~A~~~I~~i~~e~~~   68 (88)
T 2z0s_A            3 KIVEISPAKVPRVIGRKMSMLKTLEEKTEC----KIFVARNGRIHLECPNEDLEAIAVMAIKIIDEEAYT   68 (88)
T ss_dssp             EEEECCGGGSGGGTCGGGHHHHHHHHHHCC----EEEEETTTEEEEECSCHHHHHHHHHHHHHHHHCSCC
T ss_pred             EEEEECHHHHHHHHCCCHHHHHHHHHCCCE----EEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             796526688323025752268877507785----999918908999748889999999999999874436


No 29 
>>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} (A:)
Probab=48.35  E-value=8.1  Score=18.53  Aligned_cols=29  Identities=28%  Similarity=0.645  Sum_probs=24.1

Q ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             18999973741001356534899898764
Q gi|254780255|r   64 CRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        64 i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      ..+.|-...-+.|||++|..|++|++.-.
T Consensus        16 ~~i~Vp~~~vg~iIGk~G~~Ik~I~~~tg   44 (85)
T 2opv_A           16 QEIMIPAGKAGLVIGKGGETIKQLQERAG   44 (85)
T ss_dssp             EEEEECTTTHHHHHTTTTHHHHHHHHHHT
T ss_pred             EEEEECHHHCCEEECCCCHHHHHHHHHHC
T ss_conf             99997967637549989701799999709


No 30 
>>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I KH domains, fragIle X mental retardation protein, RNA binding protein; 1.90A {Homo sapiens} PDB: 2fmr_A (A:65-144)
Probab=47.41  E-value=11  Score=17.84  Aligned_cols=29  Identities=34%  Similarity=0.329  Sum_probs=24.1

Q ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             18999973741001356534899898764
Q gi|254780255|r   64 CRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        64 i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      ..+.|-...-|.|||++|..|+++++.--
T Consensus         5 ~~~~Ip~~~vg~iIGk~G~~I~~I~~~tG   33 (80)
T 2qnd_A            5 DVIQVPRNLVGKVIGKNGKLIQEIVDKSG   33 (80)
T ss_dssp             EEEEEEGGGHHHHHCGGGHHHHHHHHHHT
T ss_pred             EEECCCHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf             77605577776640568658999888619


No 31 
>>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} (A:1-81)
Probab=47.16  E-value=8.5  Score=18.42  Aligned_cols=29  Identities=28%  Similarity=0.645  Sum_probs=23.3

Q ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             18999973741001356534899898764
Q gi|254780255|r   64 CRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        64 i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      +.+.+-...-+.|||++|..|+++++.-.
T Consensus         4 ~~i~Vp~~~vg~iIGk~G~~I~~I~~~tg   32 (81)
T 2jvz_A            4 QEIMIPAGKAGLVIGKGGETIKQLQERAG   32 (81)
T ss_dssp             EEEEECTTCHHHHTCTTTHHHHHHHHTSC
T ss_pred             EEEECCHHHHCEEECCCCHHHHHHHHHHC
T ss_conf             99984736718468999876999999879


No 32 
>>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} (A:)
Probab=45.34  E-value=9.2  Score=18.19  Aligned_cols=31  Identities=23%  Similarity=0.289  Sum_probs=25.1

Q ss_pred             CCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             8518999973741001356534899898764
Q gi|254780255|r   62 KNCRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        62 ~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      ....+.+-...-+.|||++|.+|++|++.-.
T Consensus         3 ~~~~~~Vp~~~~g~iIGk~G~~Ik~I~~~tg   33 (87)
T 1ec6_A            3 ELVEIAVPENLVGAILGKGGKTLVEYQELTG   33 (87)
T ss_dssp             SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHC
T ss_pred             EEEEEEECHHHCCEEECCCCHHHHHHHHHCC
T ss_conf             6999980976658569979754999999729


No 33 
>>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:)
Probab=45.12  E-value=8.8  Score=18.32  Aligned_cols=31  Identities=26%  Similarity=0.400  Sum_probs=25.4

Q ss_pred             CCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             8518999973741001356534899898764
Q gi|254780255|r   62 KNCRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        62 ~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      ....+.|-...-+.|||++|..|++|++.-.
T Consensus        15 ~~~~i~ip~~~vg~iIG~~G~~I~~I~~~tg   45 (92)
T 1x4n_A           15 MTEEYKVPDGMVGFIIGRGGEQISRIQQESG   45 (92)
T ss_dssp             EEEEEEEEHHHHHHHHCSSSHHHHHHHHHSC
T ss_pred             EEEEEEECHHHCCEEECCCCHHHHHHHHHCC
T ss_conf             8999999967527039979731899999709


No 34 
>>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} (A:)
Probab=44.36  E-value=9.1  Score=18.25  Aligned_cols=30  Identities=27%  Similarity=0.492  Sum_probs=24.9

Q ss_pred             CCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             518999973741001356534899898764
Q gi|254780255|r   63 NCRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        63 ~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      ...+.+-...-+.|||++|..|++|++.-.
T Consensus         6 ~~~i~vp~~~~g~iIG~~G~~I~~I~~~tg   35 (76)
T 2p2r_A            6 SHELTIPNDLIGCIIGRQGAKINEIRQXSG   35 (76)
T ss_dssp             EEEEEEEHHHHHHHHCGGGHHHHHHHHHHC
T ss_pred             EEEEEECHHHCCEEECCCCCHHHHHHHHCC
T ss_conf             899999867658459959852899998769


No 35 
>>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, cytoplasm, DNA-binding, nucleus, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Homo sapiens} (A:82-160)
Probab=43.41  E-value=9.6  Score=18.11  Aligned_cols=30  Identities=33%  Similarity=0.576  Sum_probs=25.3

Q ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             189999737410013565348998987640
Q gi|254780255|r   64 CRIIVYSARPGLIIGKKGTDIEKIRKKLSN   93 (227)
Q Consensus        64 i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~   93 (227)
                      ..+.+-...-|.|||++|..|++|++.-.-
T Consensus        10 ~~i~Vp~~~vg~iIG~~G~~Ik~I~~~tga   39 (79)
T 2jzx_A           10 LRLVVPASQCGSLIGKGGCKIKEIRESTGA   39 (79)
T ss_dssp             EEEEEEHHHHHHHHCGGGHHHHHHHHHHSS
T ss_pred             EEEECCHHHHHHEECCCCHHHHHHHHHHCC
T ss_conf             887278888502226898589999998599


No 36 
>>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} (A:)
Probab=43.01  E-value=14  Score=17.21  Aligned_cols=29  Identities=28%  Similarity=0.502  Sum_probs=24.2

Q ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             18999973741001356534899898764
Q gi|254780255|r   64 CRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        64 i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      ..+.|-...-+.|||++|..++++++.-.
T Consensus         8 ~~i~ip~~~~~~iIG~~G~~i~~I~~~tg   36 (82)
T 1wvn_A            8 HELTIPNNLIGCIIGRQGANINEIRQMSG   36 (82)
T ss_dssp             EEEEEEGGGHHHHHCGGGHHHHHHHHHHC
T ss_pred             EEEEECHHHCCEEECCCCCCHHHHHHHCC
T ss_conf             99998856334379959852589999759


No 37 
>>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} (A:82-164)
Probab=42.98  E-value=12  Score=17.61  Aligned_cols=32  Identities=25%  Similarity=0.388  Sum_probs=26.5

Q ss_pred             CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             88518999973741001356534899898764
Q gi|254780255|r   61 HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        61 ~~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      +....+.+....-+.|||++|..|++|++.-.
T Consensus         9 ~~~~~i~vp~~~~g~iIG~~G~~I~~I~~~tg   40 (83)
T 2jvz_A            9 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAG   40 (83)
T ss_dssp             SSSBCCEEETTTHHHHHCSSSHHHHHHHHHTC
T ss_pred             CEEEEECCCHHHHHHHCCCCCCEEEHHHHHCC
T ss_conf             20245315587888751899842212466079


No 38 
>>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, cytoplasm, DNA-binding, nucleus, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Homo sapiens} (A:1-81)
Probab=42.09  E-value=8.2  Score=18.50  Aligned_cols=30  Identities=33%  Similarity=0.618  Sum_probs=25.5

Q ss_pred             CCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             518999973741001356534899898764
Q gi|254780255|r   63 NCRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        63 ~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      ...+.|....-+.|||++|..|++|++.-.
T Consensus         6 ~~~i~Vp~~~~g~iIG~~G~~I~~i~~~tg   35 (81)
T 2jzx_A            6 TIRLLMHGKEVGSIIGKKGESVKKMREESG   35 (81)
T ss_dssp             EEEEEEEHHHHHHHHCGGGHHHHHHHHHHC
T ss_pred             EEEEEECHHHCCEEECCCCHHHHHHHHHHC
T ss_conf             999998534505148899877999999867


No 39 
>>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} (A:1-88)
Probab=40.32  E-value=11  Score=17.67  Aligned_cols=29  Identities=24%  Similarity=0.446  Sum_probs=24.5

Q ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             18999973741001356534899898764
Q gi|254780255|r   64 CRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        64 i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      ..+.+-...-+.|||++|..|++|++.-.
T Consensus         5 ~~i~vp~~~vg~iIG~~G~~i~~i~~~tg   33 (88)
T 1j4w_A            5 IDVPIPRFAVGIVIGRNGEMIKKIQNDAG   33 (88)
T ss_dssp             EEEEEEHHHHHHHHCGGGHHHHHHHHHHC
T ss_pred             EEEECCHHHEEEEECCCCHHHHHHHHHHC
T ss_conf             99980834600579989779999999769


No 40 
>>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalogenase; CAAD, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} PDB: 3ej7_B 3ej3_B 1s0y_B (B:)
Probab=39.40  E-value=9.7  Score=18.07  Aligned_cols=17  Identities=41%  Similarity=0.610  Sum_probs=12.6

Q ss_pred             EEEEECCCCCCCCCEEEE
Q ss_conf             999703678642221578
Q gi|254780255|r  150 KVIASGRLNGAELSRTEC  167 (227)
Q Consensus       150 kI~isGRl~G~e~Ar~e~  167 (227)
                      -+.+|||++| |-|.+|.
T Consensus        49 n~sis~ri~g-eaaster   65 (70)
T 3ej9_B           49 NMSISGRIHG-EAASTER   65 (70)
T ss_dssp             GEESTTCCTT-C------
T ss_pred             CCCEEEEECC-CCCCCCC
T ss_conf             2634203325-1103344


No 41 
>>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} (A:)
Probab=39.38  E-value=13  Score=17.31  Aligned_cols=30  Identities=30%  Similarity=0.321  Sum_probs=25.2

Q ss_pred             CCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             518999973741001356534899898764
Q gi|254780255|r   63 NCRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        63 ~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      ...+.+-...-+.|||++|..|++|++.-.
T Consensus        16 ~~~i~vp~~~v~~iIGk~G~~ik~I~~~tg   45 (104)
T 1we8_A           16 FEQLSVPQRSVGRIIGRGGETIRSICKASG   45 (104)
T ss_dssp             EEEEEEETTTHHHHHTTTSHHHHHHHHHHC
T ss_pred             EEEEEECHHHHHHEECCCCCCHHHHHHHCC
T ss_conf             999998978760436929988119898659


No 42 
>>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} (A:136-229)
Probab=37.70  E-value=11  Score=17.75  Aligned_cols=61  Identities=18%  Similarity=0.162  Sum_probs=34.1

Q ss_pred             EEEEEECCCCCCCCCCCHHHHHHHHHHHCCCC--CEEEEEEEEECCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             89999737410013565348998987640358--70578799813755337787999999987596
Q gi|254780255|r   65 RIIVYSARPGLIIGKKGTDIEKIRKKLSNMTN--SEIHLSVNEVPKPEINATLIAQSIAQQLERRV  128 (227)
Q Consensus        65 ~I~I~~~kP~~iiGkkg~~i~~l~~~L~~~~~--~~v~i~v~ei~~p~~~A~~iA~~Ia~~Lekr~  128 (227)
                      .+.+-..+-|.+||++|+.|+++++...-...  ..-   ...+.-+.....--+..|...+....
T Consensus         4 ~i~vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~---~v~I~G~~~~~~~a~~~i~~~i~~~~   66 (94)
T 2ba0_A            4 IVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQNG---LIWVNGDRRKVSIAEEAIYLIEQEAH   66 (94)
T ss_dssp             EEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECTTS---EEEEESCHHHHHHHHHHHHHHHHCSC
T ss_pred             EEEECCCEECEEEECCCEEEHHHCCCCCEEEEEECCC---EEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf             8514453545055068452001214668699996785---89984598423889999999998650


No 43 
>>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:)
Probab=37.63  E-value=11  Score=17.87  Aligned_cols=30  Identities=27%  Similarity=0.606  Sum_probs=24.1

Q ss_pred             CCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             518999973741001356534899898764
Q gi|254780255|r   63 NCRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        63 ~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      ...+.|-...-+.|||++|.+|++|++...
T Consensus        16 ~~~i~ip~~~vg~iIG~~G~~Ik~I~~~tg   45 (94)
T 1x4m_A           16 VQEIMIPASKAGLVIGKGGETIKQLQERAG   45 (94)
T ss_dssp             EEEEEECHHHHHHHSCSSSSHHHHHHHHHT
T ss_pred             EEEEEECHHHHCCEECCCCHHHHHHHHHCC
T ss_conf             999997867505048979735999998729


No 44 
>>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=37.54  E-value=11  Score=17.75  Aligned_cols=30  Identities=17%  Similarity=0.418  Sum_probs=23.9

Q ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             189999737410013565348998987640
Q gi|254780255|r   64 CRIIVYSARPGLIIGKKGTDIEKIRKKLSN   93 (227)
Q Consensus        64 i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~   93 (227)
                      ..+.|-...-++|||++|..|++|++.-.-
T Consensus        19 ~~i~Vp~~~~g~iIG~~G~~I~~I~~~tg~   48 (94)
T 2cte_A           19 ATVAIPKEHHRFVIGKNGEKLQDLELKTAT   48 (94)
T ss_dssp             EEEECCTTTHHHHHCSSSCHHHHHHHHTTC
T ss_pred             EEEEECHHHHHHHCCCCCHHHHHHHHHHCC
T ss_conf             999999899967608896519999998298


No 45 
>>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} (I:156-251)
Probab=37.45  E-value=9.3  Score=18.18  Aligned_cols=64  Identities=16%  Similarity=0.128  Sum_probs=37.2

Q ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE---EEEECCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf             189999737410013565348998987640358705787---99813755337787999999987596368
Q gi|254780255|r   64 CRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLS---VNEVPKPEINATLIAQSIAQQLERRVVFR  131 (227)
Q Consensus        64 i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~~~~~~v~i~---v~ei~~p~~~A~~iA~~Ia~~Lekr~~fR  131 (227)
                      ..+.+-..+-+.+||+.|+.|+.|++...-    ++.+.   -..+-.+..++.--|..+...+.+...+.
T Consensus         2 e~i~vp~~~vg~iIGkgG~~Ik~I~~~tg~----~I~i~~~~~~~~i~g~~~~~~~A~~~I~~~~~~~~~~   68 (96)
T 2je6_I            2 IVIDIMPVKVPRVIGKNKSMYETLTSKSGC----SIFVANNGRIWATCPSRFSEEILIEAIRKIENESHIK   68 (96)
T ss_dssp             CEEECCGGGHHHHHCGGGHHHHHHHTTC-------CEECTTSEEEC-----CTTCCTHHHHTTTTTTTTCC
T ss_pred             EEEEEECCCCCEEEECCCEEEEEECCCCCE----EEEECCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             626652565660575486888980577368----9997663579971488105689999999765155423


No 46 
>>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=36.11  E-value=7.9  Score=18.60  Aligned_cols=30  Identities=27%  Similarity=0.500  Sum_probs=24.1

Q ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             189999737410013565348998987640
Q gi|254780255|r   64 CRIIVYSARPGLIIGKKGTDIEKIRKKLSN   93 (227)
Q Consensus        64 i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~   93 (227)
                      ..+.+-...-++|||++|.+|++|++.-.-
T Consensus        12 ~~i~vp~~~~~~iIGk~G~~i~~I~~~tg~   41 (83)
T 2dgr_A           12 IQVRVPYRVVGLVVGPKGATIKRIQQRTHT   41 (83)
T ss_dssp             EEEECCHHHHHHHHTTTTSSHHHHHHHTTC
T ss_pred             EEEEECHHHHHHEECCCCCCHHHHHHHHCC
T ss_conf             999999787503389689129999998799


No 47 
>>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=34.19  E-value=7.1  Score=18.86  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=24.8

Q ss_pred             CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             88518999973741001356534899898764
Q gi|254780255|r   61 HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        61 ~~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      +....+.|-...-+.|||++|.+|+++++.-.
T Consensus        14 ~~~~~i~Vp~~~~~~iIGk~G~~Ik~I~~~tg   45 (91)
T 2cpq_A           14 AFHEEFVVREDLMGLAIGTHGSNIQQARKVPG   45 (91)
T ss_dssp             SEEEEEECCHHHHHHHHTTTTHHHHHHHTSTT
T ss_pred             CEEEEEEECHHHHHHHCCCCCHHHHHHHHHCC
T ss_conf             60699998989987881896089999999629


No 48 
>>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} (A:)
Probab=33.70  E-value=17  Score=16.70  Aligned_cols=29  Identities=31%  Similarity=0.511  Sum_probs=23.9

Q ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             18999973741001356534899898764
Q gi|254780255|r   64 CRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        64 i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      ..+.|-...-+.|||++|..|++|++.-.
T Consensus        16 ~~i~Vp~~~~g~iIG~~G~~i~~I~~~tg   44 (89)
T 1j5k_A           16 TQVTIPKDLAGSIIGKGGQRIKQIRHESG   44 (89)
T ss_dssp             EEEEEEHHHHHHHHCGGGHHHHHHHHHTC
T ss_pred             EEEEECHHHCCEEECCCCHHHHHHHHHHC
T ss_conf             99999867568249979718999999879


No 49 
>>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=33.13  E-value=14  Score=17.22  Aligned_cols=31  Identities=19%  Similarity=0.272  Sum_probs=24.7

Q ss_pred             CCCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             8518999973741001356534899898764
Q gi|254780255|r   62 KNCRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        62 ~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      ....|.|-...-+.|||++|..|+++++.--
T Consensus        17 ~~~~i~Vp~~~~g~iIG~~G~~I~~I~~~tg   47 (95)
T 2ctj_A           17 AEVEVSIPAKLHNSLIGTKGRLIRSIMEECG   47 (95)
T ss_dssp             CCEEEECCHHHHHHHHCSSSHHHHHHHHHHT
T ss_pred             EEEEEEECHHHHHHHCCCCCHHHHHHHHHCC
T ss_conf             8999998989873508998468999999729


No 50 
>>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} (A:)
Probab=32.70  E-value=18  Score=16.53  Aligned_cols=30  Identities=23%  Similarity=0.383  Sum_probs=23.4

Q ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             189999737410013565348998987640
Q gi|254780255|r   64 CRIIVYSARPGLIIGKKGTDIEKIRKKLSN   93 (227)
Q Consensus        64 i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~   93 (227)
                      ..+.+-...-+.+||++|..++++++.-.-
T Consensus         7 ~~i~Vp~~~~~~iIG~~G~~I~~I~~~tg~   36 (71)
T 1vig_A            7 VEINIDHKFHRHLIGKSGANINRIKDQYKV   36 (71)
T ss_dssp             EEEEECSSHHHHHTCSSCCHHHHHHHHTCC
T ss_pred             EEEEECHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf             999999887423279999029999997099


No 51 
>>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=32.66  E-value=16  Score=16.85  Aligned_cols=31  Identities=29%  Similarity=0.324  Sum_probs=25.5

Q ss_pred             CCEEEEEECCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             5189999737410013565348998987640
Q gi|254780255|r   63 NCRIIVYSARPGLIIGKKGTDIEKIRKKLSN   93 (227)
Q Consensus        63 ~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~   93 (227)
                      ...|.|-...-+.|||++|..|++|++.-.-
T Consensus        18 ~~~i~Vp~~~~g~iIG~~G~~Ik~I~~~tga   48 (97)
T 2ctl_A           18 KLSVTVDPKYHPKIIGRKGAVITQIRLEHDV   48 (97)
T ss_dssp             EEEEECCTTTHHHHSCSSSCHHHHHHHHHTC
T ss_pred             EEEEEECHHHHHHCCCCCCCCHHHHHHHHCC
T ss_conf             7999989899966138897419999998698


No 52 
>>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} (A:)
Probab=31.58  E-value=27  Score=15.55  Aligned_cols=24  Identities=33%  Similarity=0.548  Sum_probs=10.8

Q ss_pred             EEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf             997374100135653489989876
Q gi|254780255|r   68 VYSARPGLIIGKKGTDIEKIRKKL   91 (227)
Q Consensus        68 I~~~kP~~iiGkkg~~i~~l~~~L   91 (227)
                      +-...-++|||++|..+++|++..
T Consensus         9 ip~~~~~~iIG~~G~~i~~i~~~~   32 (163)
T 3krm_A            9 IPAQAVGAIIGKKGQHIKQLSRFA   32 (163)
T ss_dssp             EEGGGHHHHHCGGGHHHHHHHHHH
T ss_pred             ECHHHHCCEECCCCHHHHHHHHHH
T ss_conf             866761303998976699999987


No 53 
>>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=30.40  E-value=17  Score=16.67  Aligned_cols=30  Identities=23%  Similarity=0.284  Sum_probs=24.9

Q ss_pred             CEEEEEECCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             189999737410013565348998987640
Q gi|254780255|r   64 CRIIVYSARPGLIIGKKGTDIEKIRKKLSN   93 (227)
Q Consensus        64 i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~   93 (227)
                      ..+.|-...-+.|||++|..|++|++...-
T Consensus        19 ~~i~vp~~~~g~iIGk~G~~i~~I~~~tg~   48 (95)
T 2ctm_A           19 EDVPLDHRVHARIIGARGKAIRKIMDEFKV   48 (95)
T ss_dssp             EEEECCTTTHHHHHCSSSCHHHHHHHHHTC
T ss_pred             EEEEECHHHHHHHCCCCCCCHHHHHHHHCC
T ss_conf             999999899977518898339999998298


No 54 
>>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=28.64  E-value=20  Score=16.27  Aligned_cols=28  Identities=32%  Similarity=0.491  Sum_probs=22.0

Q ss_pred             EEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             8999973741001356534899898764
Q gi|254780255|r   65 RIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        65 ~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      .+.+-...-+++||++|..|+++++.--
T Consensus        30 ~i~Vp~~~~~~iIG~~G~~Ik~I~~~tg   57 (102)
T 2ctf_A           30 SVAAPSWLHRFIIGKKGQNLAKITQQMP   57 (102)
T ss_dssp             EEECCSTTHHHHHTTTTCHHHHHHHHCS
T ss_pred             EEEECHHHHHHHCCCCHHHHHHHHHHCC
T ss_conf             9980889884723886278999999839


No 55 
>>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein/RNA complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* (A:)
Probab=26.79  E-value=26  Score=15.60  Aligned_cols=28  Identities=32%  Similarity=0.566  Sum_probs=19.9

Q ss_pred             EEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             8999973741001356534899898764
Q gi|254780255|r   65 RIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        65 ~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      .+.+-...-+.|||++|..|+++++...
T Consensus         9 ~i~vp~~~~~~iIG~~G~~ik~i~~~t~   36 (178)
T 2anr_A            9 KVLIPSYAAGSIIGKGGQTIVQLQKETG   36 (178)
T ss_dssp             EEEEEHHHHHHHHCGGGHHHHHHHHHHC
T ss_pred             EEEECHHHHCEEECCCCHHHHHHHHHHC
T ss_conf             9999857717069999875999999879


No 56 
>>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} (A:370-425)
Probab=25.20  E-value=45  Score=14.22  Aligned_cols=31  Identities=32%  Similarity=0.316  Sum_probs=17.4

Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHH---HHHHHHHHC
Q ss_conf             3377879999999875963689999---999985323
Q gi|254780255|r  111 INATLIAQSIAQQLERRVVFRRAMK---RAVQSAMRF  144 (227)
Q Consensus       111 ~~A~~iA~~Ia~~Lekr~~fRr~~k---~~i~~~~k~  144 (227)
                      ++|.=+|+++   ..+++|||.+=.   +.++.+...
T Consensus         1 l~ATdlAdyL---V~kGvPFR~AH~ivG~~V~~a~~~   34 (56)
T 1k7w_A            1 MLATDLALYL---VRKGVPFRQAHTASGKAVHLAETK   34 (56)
T ss_dssp             GGHHHHHHHH---HTTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             1158999999---986998999999999999999996


No 57 
>>2a98_A Inositol 1,4,5-trisphosphate 3-kinase C; structural genomics, structural genomics consortium, SGC, transferase; HET: I3P; 2.60A {Homo sapiens} (A:52-67,A:124-259)
Probab=24.58  E-value=14  Score=17.11  Aligned_cols=20  Identities=20%  Similarity=0.277  Sum_probs=17.2

Q ss_pred             CCCCCCCCEEEEEEECCCEE
Q ss_conf             98645785266503206215
Q gi|254780255|r    1 MGQKINPILFRLGVNCTWNS   20 (227)
Q Consensus         1 MGQKvnP~g~RLg~~k~w~S   20 (227)
                      ||-.++.+|||+.--+.|+.
T Consensus        12 ~~~~~~sLGfRi~Gm~v~~~   31 (152)
T 2a98_A           12 MGSRTSTLGFRIEGIKKADG   31 (152)
T ss_dssp             ESSCCHHHSEEEEEEECTTS
T ss_pred             ECCCCCCEEEEEEEEECCCC
T ss_conf             24645733698764362467


No 58 
>>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* (A:203-303)
Probab=23.80  E-value=34  Score=14.95  Aligned_cols=26  Identities=23%  Similarity=0.429  Sum_probs=22.3

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf             15670273125799998999999999
Q gi|254780255|r   19 NSRWFARGSEYGALLHEDLKIREYLQ   44 (227)
Q Consensus        19 ~S~Wfa~~k~Y~~~L~eD~~IR~fi~   44 (227)
                      -|.|++-.+++.+++.+|-..++++.
T Consensus        46 Gs~w~~Ltr~fv~yi~~~~~~~~~l~   71 (101)
T 2gak_A           46 GSAYFVVTREYVGYVLENENIQKLME   71 (101)
T ss_dssp             CCSCCEEEHHHHHHHHHCHHHHHHHH
T ss_pred             EEEEEEEEHHHHHHHHHCCCHHHHHH
T ss_conf             00679974999999870885789999


No 59 
>>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolase/protein binding complex; 2.40A {Helicobacter pylori 26695} (G:1-80)
Probab=23.75  E-value=48  Score=14.06  Aligned_cols=60  Identities=18%  Similarity=0.225  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHC--CCCCEEEEECCCC-CEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf             999999877422--6422155325885-18999973741001356534899898764035870
Q gi|254780255|r   39 IREYLQCHLKQA--GVAKILIERTHKN-CRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSE   98 (227)
Q Consensus        39 IR~fi~k~l~~a--gis~i~I~Rt~~~-i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~~~~~~   98 (227)
                      |++=+.+.|...  .|..+++..-..+ +.|.+--..-.++||+.|..-+.+.-.|-++.+.+
T Consensus         7 I~~~l~~Lf~~~~f~I~~ieV~~yd~~tl~I~~dGeDaALLIGkegyRYKAlSYlLfNWIn~k   69 (80)
T 2pt7_G            7 IKQELKDLFSHLPYKINKVEVSLYEPGVLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHPT   69 (80)
T ss_dssp             HHHHHHHHTTTTTCCEEEEEEEEEETTEEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEECCCCHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf             999999999967997179998742797799995686267672777326999999999998306


No 60 
>>2jy9_A Putative tRNA hydrolase domain; GFT protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} (A:)
Probab=21.80  E-value=35  Score=14.85  Aligned_cols=24  Identities=13%  Similarity=0.153  Sum_probs=15.8

Q ss_pred             CCCCCCCEEEEEEECCCEEEEECC
Q ss_conf             864578526650320621567027
Q gi|254780255|r    2 GQKINPILFRLGVNCTWNSRWFAR   25 (227)
Q Consensus         2 GQKvnP~g~RLg~~k~w~S~Wfa~   25 (227)
                      ||+||...-+.-+.-+....|+..
T Consensus        27 GQ~VNKt~skV~l~~~~~~~~~~~   50 (148)
T 2jy9_A           27 GQHVNKTSSAIHLRFDIRASGLPE   50 (148)
T ss_dssp             SSCSCSCSCEEEEEECSTTSCCCH
T ss_pred             CCCCCHHCCEEEEEEECCCCCCCH
T ss_conf             764012220147897314467997


No 61 
>>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=20.59  E-value=24  Score=15.75  Aligned_cols=30  Identities=23%  Similarity=0.357  Sum_probs=23.7

Q ss_pred             CCEEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             518999973741001356534899898764
Q gi|254780255|r   63 NCRIIVYSARPGLIIGKKGTDIEKIRKKLS   92 (227)
Q Consensus        63 ~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~   92 (227)
                      ...+.+-...-+.|||++|.++++|.+.-.
T Consensus        18 ~~~i~Vp~~~~~~iIG~~G~~i~~I~~~tg   47 (104)
T 2ctk_A           18 TIEVEVPFDLHRYVIGQKGSGIRKMMDEFE   47 (104)
T ss_dssp             EEEEECCHHHHHHHHCSSSHHHHHHHHHTC
T ss_pred             EEEEEECHHHHHHHCCCCCCCHHHHHHHHC
T ss_conf             999998989998851899951789999729


No 62 
>>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, four fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} (A:1-98)
Probab=20.29  E-value=22  Score=15.98  Aligned_cols=33  Identities=30%  Similarity=0.450  Sum_probs=21.3

Q ss_pred             ECCCCCCCEEEECEEEEEE------EEECCCEEEEEEEE
Q ss_conf             2553245200003056899------99538266799997
Q gi|254780255|r  170 EGRVPLQTLRAHIDYGTAV------AETAYGSCGIKVYV  202 (227)
Q Consensus       170 ~G~vpl~t~~a~idy~~~~------a~T~~G~~GvKVwi  202 (227)
                      +|.+|||||+-.=||.+..      ..-.++.+.+...-
T Consensus         1 eetvpLqtL~C~NDyts~I~C~Wadt~dAqr~in~tLy~   39 (98)
T 2gys_A            1 EETIPLQTLRCYNDYTSHITCRWADTQDAQRLVNVTLIR   39 (98)
T ss_dssp             CCCHHHHHCEEEECSSSEEEEEEEEEHHHHTTCCEEEEE
T ss_pred             CCCCCCCCEEEEECCCCEEEEEECCCCCCCCEEEEEEEE
T ss_conf             998898876999897888999988998789877899999


Done!