HHsearch results for GI: 254780255 and protein with PDBid: 2vqe_C
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=100.00 E-value=0 Score=509.32 Aligned_cols=215 Identities=47% Similarity=0.789 Sum_probs=209.3
Q ss_pred CCCCCCCCEEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf 98645785266503206215670273125799998999999999877422642215532588518999973741001356
Q gi|254780255|r 1 MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTHKNCRIIVYSARPGLIIGKK 80 (227)
Q Consensus 1 MGQKvnP~g~RLg~~k~w~S~Wfa~~k~Y~~~L~eD~~IR~fi~k~l~~agis~i~I~Rt~~~i~I~I~~~kP~~iiGkk 80 (227)
|||||||+|||||++++|+|.|||++++|+++|+||++||+||+++|.++|+++++|+|+++.+.|+||+++|+.++|++
T Consensus 1 MGQKvnP~g~RLgi~k~w~S~Wya~~k~Y~~~L~eD~~IR~yl~k~l~~agis~i~I~r~~~~~~I~I~~~~p~~iig~k 80 (239)
T 2vqe_C 1 MGNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRG 80 (239)
T ss_dssp -CCCCCTTTTTTTSSCCCSBCCCCCTTTHHHHHHHHHHHHHHHHTTTTTTCEEEECBCBSSSCBCCEEEESCGGGTSCSS
T ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCCCEECCCC
T ss_conf 97988981520154689863484791355799999999999999762552445310463267459999935875220255
Q ss_pred CHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf 53489989876403587057879981375533778799999998759636899999999853238855999970367864
Q gi|254780255|r 81 GTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGA 160 (227)
Q Consensus 81 g~~i~~l~~~L~~~~~~~v~i~v~ei~~p~~~A~~iA~~Ia~~Lekr~~fRr~~k~~i~~~~k~g~kGikI~isGRl~G~ 160 (227)
|..++++...++++++.+++|++.++.+|+++|.++|++||++||+|++||++++++++++|++||+|++|+|||||||+
T Consensus 81 g~~i~~l~~~l~k~~~~~~~i~v~~v~~p~l~a~~iA~~ia~~Le~r~~frr~~~~~l~~~~~~gakG~kI~iSGRl~g~ 160 (239)
T 2vqe_C 81 GERIRVLREELAKLTGKNVALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGA 160 (239)
T ss_dssp SSHHHHHHHHHHHHSTTCCCCEEEECSCTTSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSSCSEEEEEECSCTTTC
T ss_pred CHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHH
T ss_conf 42578999999997489659999991275520589999999999704044999999999875548757999963653633
Q ss_pred CCCEEEEEEECCCCCCCEEEECEEEEEEEEECCCEEEEEEEEEECCCCCCCCCCC
Q ss_conf 2221578752553245200003056899995382667999973288537721134
Q gi|254780255|r 161 ELSRTECYLEGRVPLQTLRAHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215 (227)
Q Consensus 161 e~Ar~e~~~~G~vpl~t~~a~idy~~~~a~T~~G~~GvKVwi~~~~~~~~~~~~~ 215 (227)
||||+||+++|+|||||++++|||++++|+|+||+||||||||.+|+.+++....
T Consensus 161 e~ar~e~~~~G~vpl~t~~~~Idy~~~~a~Tk~Gi~GVKVwI~~~~~~~~~~~~~ 215 (239)
T 2vqe_C 161 EQARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLGVKAYIFLGEVIGGQKPKA 215 (239)
T ss_dssp SSCCCBCCEEECCCTTCGGGCEEEEEECCBCSSCBCCEEEEEECCCC--------
T ss_pred HCEEEEEEECCEEECCCCCCCEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCC
T ss_conf 2027899856299887546616999999980887189999998887478877655