HHsearch results for GI: 254780255 and protein with PDBid: 2zkq_c
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1h_C 3jyv_C*
Probab=100.00 E-value=0 Score=386.75 Aligned_cols=185 Identities=21% Similarity=0.304 Sum_probs=177.9
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCC---
Q ss_conf 56702731257999989999999998774226422155325885189999737410013565348998987640358---
Q gi|254780255|r 20 SRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTN--- 96 (227)
Q Consensus 20 S~Wfa~~k~Y~~~L~eD~~IR~fi~k~l~~agis~i~I~Rt~~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~~~~--- 96 (227)
+.|.+.++.|.....++.+||+||.+.|.++||++++|+|+++.+.|+||+++||++||++|..+++|++.|++.|+
T Consensus 2 ~~~~s~kkkfv~~~~~~~~irefl~k~l~~aGis~ieI~Rt~~~~~I~I~t~rPg~vIGrkG~~i~~L~~~L~k~~~~~~ 81 (243)
T 2zkq_c 2 AVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPE 81 (243)
T ss_dssp CBCCCCTTTHHHHHHHHHHHHHHHHHHTCTTTEEEEECBEETTEECCEEEESCHHHHHCGGGHHHHHHHHHHHHHSCTTT
T ss_pred CHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCCEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 42576666999813289999999999887677444999987882899999189963755775789999999999837678
Q ss_pred CEEEEEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEECCCCC-
Q ss_conf 7057879981375533778799999998759636899999999853238855999970367864222157875255324-
Q gi|254780255|r 97 SEIHLSVNEVPKPEINATLIAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPL- 175 (227)
Q Consensus 97 ~~v~i~v~ei~~p~~~A~~iA~~Ia~~Lekr~~fRr~~k~~i~~~~k~g~kGikI~isGRl~G~e~Ar~e~~~~G~vpl- 175 (227)
.++.|++.+|.+|++||+++|++||+|||+|++|||+++++++++|++||+||+|+|||||+| ||||+|||++|+|||
T Consensus 82 ~~i~i~v~ev~~p~l~A~l~A~~ia~qLe~r~~fRra~~~~i~~~m~aGAkGikI~iSGrL~g-e~AR~e~~~eG~vp~s 160 (243)
T 2zkq_c 82 GSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRG-QRAKSMKFVDGLMIHS 160 (243)
T ss_dssp CCCCCEEEECSCGGGCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHSSCSEEEEEECSSGGG-SSCCCBCCEEESSHHH
T ss_pred CEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH-HHHHHHHHHCCCCCCC
T ss_conf 728999997578431869999999999865722899999999998765986359999436446-7652556436853227
Q ss_pred -CCEEEECEEEEEEEEECCCEEEEEEEEEEC
Q ss_conf -520000305689999538266799997328
Q gi|254780255|r 176 -QTLRAHIDYGTAVAETAYGSCGIKVYVSLR 205 (227)
Q Consensus 176 -~t~~a~idy~~~~a~T~~G~~GvKVwi~~~ 205 (227)
||++++|||++++|+|+||++|||||||++
T Consensus 161 g~t~r~~IDya~~~a~t~~GiiGVKVwI~~~ 191 (243)
T 2zkq_c 161 GDPVNYYVDTAVRHVLLRQGVLGIKVKIMLP 191 (243)
T ss_dssp HSSTTCCEEEEEECCCCSSCCCCEEEEEECC
T ss_pred CCCCCCEEEEEEEEEECCCEEEEEEEEEECC
T ss_conf 9600100358999996587269999999568