HHsearch results for GI: 254780255 and protein with PDBid: 3gku_A
>3gku_A Probable RNA-binding protein; APC21302, structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=94.14 E-value=0.025 Score=32.19 Aligned_cols=103 Identities=22% Similarity=0.363 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHCCCC-CEEEEE--CCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCC----CCE--EEEEEEEEC-
Q ss_conf 9999999877422642-215532--588518999973741001356534899898764035----870--578799813-
Q gi|254780255|r 38 KIREYLQCHLKQAGVA-KILIER--THKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMT----NSE--IHLSVNEVP- 107 (227)
Q Consensus 38 ~IR~fi~k~l~~agis-~i~I~R--t~~~i~I~I~~~kP~~iiGkkg~~i~~l~~~L~~~~----~~~--v~i~v~ei~- 107 (227)
...+|++..+...|+. .+.++. ....+.|.|.+..++++||++|..++.|+..+.... +.. +.+++....
T Consensus 65 ~a~~~Le~ll~~mg~~~~v~v~~~~~~~~i~i~i~g~d~g~LIGk~G~tL~aLQ~L~~~~v~~~~~~~~~V~lDi~~YR~ 144 (225)
T 3gku_A 65 KAIEFLEQVFDAMNMAVDISVEYNETEKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKSSSDYIRVKLDTENYRE 144 (225)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEEETTTTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHTCSSCCEEEEESTTHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHH
T ss_conf 89999999999759981489999447608999960662322314797106899999999998744873599985798999
Q ss_pred CCCCCHHHHHHHHHHHHHC-CC---------HHHHHHHHHHHH
Q ss_conf 7553377879999999875-96---------368999999998
Q gi|254780255|r 108 KPEINATLIAQSIAQQLER-RV---------VFRRAMKRAVQS 140 (227)
Q Consensus 108 ~p~~~A~~iA~~Ia~~Lek-r~---------~fRr~~k~~i~~ 140 (227)
+-+-.-.-+|..+|.+..+ +. .-||++..+++.
T Consensus 145 rR~e~L~~lA~~~a~kv~~tgk~v~L~PM~~~ERRiIH~~L~~ 187 (225)
T 3gku_A 145 RRKETLETLAKNIAYKVKRTKRSVSLEPMNPYERRIIHAALQN 187 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCEECCCCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHC
T ss_conf 9999999999999999984296787489986889999999841