HHSEARCH alignment of GI: 254780255 and SCOP domain: d2qalc1

Alignment
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=6.9e-39  Score=241.97  Aligned_cols=105  Identities=43%  Similarity=0.807  Sum_probs=103.4

Q ss_pred             CCCCCCCEEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf             86457852665032062156702731257999989999999998774226422155325885189999737410013565
Q gi|254780255|r    2 GQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTHKNCRIIVYSARPGLIIGKKG   81 (227)
Q Consensus         2 GQKvnP~g~RLg~~k~w~S~Wfa~~k~Y~~~L~eD~~IR~fi~k~l~~agis~i~I~Rt~~~i~I~I~~~kP~~iiGkkg   81 (227)
                      ||||||+|||||++++|+|.|||++++|+.+|+||++||+||++++.+|||++|+|+|+.+.+.|+|||++||++||++|
T Consensus         1 GQKv~P~GfRlGi~~~~~S~Wfa~~~~Y~~~l~eD~~IR~~i~k~~~~a~Is~IeIeR~~~~i~V~I~tarPGviIG~~G   80 (105)
T d2qalc1           1 GQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKG   80 (105)
T ss_dssp             CCCCCHHHHTTTTTSCCSCCCCCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEEECCCCSSCBCCEEEESCHHHHHCTTS
T ss_pred             CCCCCCCCEEECCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCCCEECCCC
T ss_conf             99769831640445898777868951048999999999999999987566212799854785799999679761753673


Q ss_pred             HHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf             3489989876403587057879981
Q gi|254780255|r   82 TDIEKIRKKLSNMTNSEIHLSVNEV  106 (227)
Q Consensus        82 ~~i~~l~~~L~~~~~~~v~i~v~ei  106 (227)
                      +++++|++.|+++++++++++|.||
T Consensus        81 ~~i~~L~~~l~k~~~~~v~inI~EV  105 (105)
T d2qalc1          81 EDVEKLRKVVADIAGVPAQINIAEV  105 (105)
T ss_dssp             HHHHHHHHHHHHHHTSCBCCEEECC
T ss_pred             CCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             1099999999998699716988979


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Prokaryotic type KH domain (KH-domain type II)
family: Prokaryotic type KH domain (KH-domain type II)
domain: Ribosomal protein S3 N-terminal domain
species: Escherichia coli [TaxId: 562]