HHSEARCH alignment of GI: 254780255 and SCOP domain: d2uubc1

Alignment
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=4.6e-39  Score=242.95  Aligned_cols=105  Identities=43%  Similarity=0.776  Sum_probs=103.2

Q ss_pred             CCCCCCCEEEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf             86457852665032062156702731257999989999999998774226422155325885189999737410013565
Q gi|254780255|r    2 GQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTHKNCRIIVYSARPGLIIGKKG   81 (227)
Q Consensus         2 GQKvnP~g~RLg~~k~w~S~Wfa~~k~Y~~~L~eD~~IR~fi~k~l~~agis~i~I~Rt~~~i~I~I~~~kP~~iiGkkg   81 (227)
                      ||||||+|||||++++|+|.|||++++|+++|+||++||+||+++|.+|||++|+|+|+++.+.|+|||++||++||++|
T Consensus         1 GQKv~P~gfRlGi~k~w~S~W~a~~~~y~~~l~eD~~IR~~i~k~~~~agIs~IeIeR~~~~i~I~I~tarPG~iIGkkG   80 (105)
T d2uubc1           1 GNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGG   80 (105)
T ss_dssp             CCCCCTTTTTTTTTSCCSCBCCCCTTTTTHHHHHHHHHHHHHHHSTTTTTEEEECCEESSSCEECCEEESCHHHHHCSTT
T ss_pred             CCCCCCCCEEECCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCEEECCCC
T ss_conf             98749832621556898756848803459999999999999986132267354899973686899999789860874773


Q ss_pred             HHHHHHHHHHHCCCCCEEEEEEEEE
Q ss_conf             3489989876403587057879981
Q gi|254780255|r   82 TDIEKIRKKLSNMTNSEIHLSVNEV  106 (227)
Q Consensus        82 ~~i~~l~~~L~~~~~~~v~i~v~ei  106 (227)
                      +++++|++.|+++++++++++|.||
T Consensus        81 ~~i~~L~~~l~k~~~k~v~inI~EV  105 (105)
T d2uubc1          81 ERIRVLREELAKLTGKNVALNVQEV  105 (105)
T ss_dssp             SHHHHHHHHHHHHSSCCCCCCCCBC
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             5499999999998699855999989


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Prokaryotic type KH domain (KH-domain type II)
family: Prokaryotic type KH domain (KH-domain type II)
domain: Ribosomal protein S3 N-terminal domain
species: Thermus thermophilus [TaxId: 274]