BLAST/PSIBLAST alignment of GI: 254780255 and GI: 209548941 at iteration 1

>gi|209548941|ref|YP_002280858.1| 30S ribosomal protein S3 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 243
>gi|226697749|sp|B5ZYU1|RS3_RHILW RecName: Full=30S ribosomal protein S3 Length = 243
>gi|209534697|gb|ACI54632.1| ribosomal protein S3 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 243

 Score =  320 bits (820), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 151/227 (66%), Positives = 189/227 (83%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI FRLG+N TW+SRWFA  +EYG LLHEDLK+R+++   LKQAG++K++IER 
Sbjct: 1   MGQKINPIGFRLGINRTWDSRWFADNAEYGQLLHEDLKMRKFVMSELKQAGISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPGLIIG+KG DI+K+RKKLS+MTNSE HL++ EV KPE++ATL+AQSI
Sbjct: 61  HKKCRVTIHSARPGLIIGRKGADIDKLRKKLSDMTNSETHLNIVEVRKPEVDATLVAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+K+  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIKITCAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYGTA AETA+G CGIKV++  + E+ + D    A+E R +E D+
Sbjct: 181 DIDYGTAEAETAFGICGIKVWI-FKGEILEHDPM--ASERRAMEGDA 224