BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780255|ref|YP_003064668.1| 30S ribosomal protein S3
[Candidatus Liberibacter asiaticus str. psy62]
         (227 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done


Results from round 1


>gi|254780255|ref|YP_003064668.1| 30S ribosomal protein S3 [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254039932|gb|ACT56728.1| 30S ribosomal protein S3 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 227

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/227 (100%), Positives = 227/227 (100%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT
Sbjct: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI
Sbjct: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA
Sbjct: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
           HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS
Sbjct: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227


>gi|315122812|ref|YP_004063301.1| 30S ribosomal protein S3 [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496214|gb|ADR52813.1| 30S ribosomal protein S3 [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 225

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/227 (81%), Positives = 207/227 (91%), Gaps = 2/227 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPILFRLGVNCTW+SRWFARGSEYG LLHEDLKIR+YL+ +LKQAGVAKILIERT
Sbjct: 1   MGQKINPILFRLGVNCTWSSRWFARGSEYGTLLHEDLKIRKYLEGNLKQAGVAKILIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK C I VYSARPGLIIGKKG+DI++IRK LS MT SEIHL+VNEV KPEINATLIAQSI
Sbjct: 61  HKKCFITVYSARPGLIIGKKGSDIDRIRKNLSKMTPSEIHLNVNEVSKPEINATLIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRVVFRRAMKRAVQSAMRFGA+G+K+I SGRLNG ELSRTECYLEGRVPLQTLRA
Sbjct: 121 AQQLERRVVFRRAMKRAVQSAMRFGAEGIKIICSGRLNGLELSRTECYLEGRVPLQTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
           +IDYG+A+A+TAYG CG+KVYVS+R EVSDSD+   ++  R +EK +
Sbjct: 181 NIDYGSAIAKTAYGICGVKVYVSIR-EVSDSDNA-TSSNRRPLEKSN 225


>gi|15965115|ref|NP_385468.1| 30S ribosomal protein S3 [Sinorhizobium meliloti 1021]
 gi|307314365|ref|ZP_07593971.1| ribosomal protein S3 [Sinorhizobium meliloti BL225C]
 gi|307322077|ref|ZP_07601453.1| ribosomal protein S3 [Sinorhizobium meliloti AK83]
 gi|27734523|sp|Q92QG4|RS3_RHIME RecName: Full=30S ribosomal protein S3
 gi|15074295|emb|CAC45941.1| Probable 30S ribosomal protein S3 [Sinorhizobium meliloti 1021]
 gi|306892259|gb|EFN23069.1| ribosomal protein S3 [Sinorhizobium meliloti AK83]
 gi|306899063|gb|EFN29705.1| ribosomal protein S3 [Sinorhizobium meliloti BL225C]
          Length = 237

 Score =  322 bits (825), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 155/227 (68%), Positives = 185/227 (81%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI FRLG+N TW+SRWFA  +EYG LLHEDLKIR YL   LK AG+AK++IER 
Sbjct: 1   MGQKINPIGFRLGINRTWDSRWFADNAEYGQLLHEDLKIRAYLMEELKSAGIAKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPGLIIGKKG DIEK+RKKLS MTNSE HL++ EV KPE++ATL+AQSI
Sbjct: 61  HKKCRVTIHSARPGLIIGKKGADIEKLRKKLSEMTNSETHLNIVEVRKPEVDATLVAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+K+  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIKITCAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYGTA AETA+G CG+KV++  + E+ + D    A+E R  E D+
Sbjct: 181 DIDYGTAEAETAFGICGVKVWI-FKGEILEHDPM--ASERRATESDN 224


>gi|227821762|ref|YP_002825732.1| 30S ribosomal protein S3 [Sinorhizobium fredii NGR234]
 gi|254764541|sp|C3MAY6|RS3_RHISN RecName: Full=30S ribosomal protein S3
 gi|227340761|gb|ACP24979.1| 30S ribosomal protein S3 [Sinorhizobium fredii NGR234]
          Length = 237

 Score =  322 bits (824), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 155/227 (68%), Positives = 185/227 (81%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI FRLG+N TW+SRWFA  +EYG LLHEDLKIR YL   LK AG+AK++IER 
Sbjct: 1   MGQKINPIGFRLGINRTWDSRWFADNAEYGQLLHEDLKIRAYLMEELKAAGIAKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPGLIIGKKG DIEK+RKKLS MTNSE HL++ EV KPE++ATL+AQSI
Sbjct: 61  HKKCRVTIHSARPGLIIGKKGADIEKLRKKLSEMTNSETHLNIVEVRKPEVDATLVAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+K+  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIKITCAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYGTA AETA+G CG+KV++  + E+ + D    A+E R  E D+
Sbjct: 181 DIDYGTAEAETAFGICGVKVWI-FKGEILEHDPM--ASERRATESDN 224


>gi|150396213|ref|YP_001326680.1| 30S ribosomal protein S3 [Sinorhizobium medicae WSM419]
 gi|189045338|sp|A6U865|RS3_SINMW RecName: Full=30S ribosomal protein S3
 gi|150027728|gb|ABR59845.1| ribosomal protein S3 [Sinorhizobium medicae WSM419]
          Length = 237

 Score =  322 bits (824), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 155/227 (68%), Positives = 185/227 (81%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI FRLG+N TW+SRWFA  +EYG LLHEDLKIR YL   LK AG+AK++IER 
Sbjct: 1   MGQKINPIGFRLGINRTWDSRWFADNAEYGQLLHEDLKIRAYLMEELKAAGIAKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPGLIIGKKG DIEK+RKKLS MTNSE HL++ EV KPE++ATL+AQSI
Sbjct: 61  HKKCRVTIHSARPGLIIGKKGADIEKLRKKLSEMTNSETHLNIVEVRKPEVDATLVAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+K+  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIKITCAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYGTA AETA+G CG+KV++  + E+ + D    A+E R  E D+
Sbjct: 181 DIDYGTAEAETAFGICGVKVWI-FKGEILEHDPM--ASERRATESDN 224


>gi|209548941|ref|YP_002280858.1| 30S ribosomal protein S3 [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|226697749|sp|B5ZYU1|RS3_RHILW RecName: Full=30S ribosomal protein S3
 gi|209534697|gb|ACI54632.1| ribosomal protein S3 [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 243

 Score =  320 bits (820), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 151/227 (66%), Positives = 189/227 (83%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI FRLG+N TW+SRWFA  +EYG LLHEDLK+R+++   LKQAG++K++IER 
Sbjct: 1   MGQKINPIGFRLGINRTWDSRWFADNAEYGQLLHEDLKMRKFVMSELKQAGISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPGLIIG+KG DI+K+RKKLS+MTNSE HL++ EV KPE++ATL+AQSI
Sbjct: 61  HKKCRVTIHSARPGLIIGRKGADIDKLRKKLSDMTNSETHLNIVEVRKPEVDATLVAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+K+  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIKITCAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYGTA AETA+G CGIKV++  + E+ + D    A+E R +E D+
Sbjct: 181 DIDYGTAEAETAFGICGIKVWI-FKGEILEHDPM--ASERRAMEGDA 224


>gi|86357311|ref|YP_469203.1| 30S ribosomal protein S3 [Rhizobium etli CFN 42]
 gi|190891361|ref|YP_001977903.1| 30S ribosomal protein S3 [Rhizobium etli CIAT 652]
 gi|123765804|sp|Q2K9L0|RS3_RHIEC RecName: Full=30S ribosomal protein S3
 gi|226697748|sp|B3PWS7|RS3_RHIE6 RecName: Full=30S ribosomal protein S3
 gi|86281413|gb|ABC90476.1| 30S ribosomal protein S3 [Rhizobium etli CFN 42]
 gi|190696640|gb|ACE90725.1| 30S ribosomal protein S3 [Rhizobium etli CIAT 652]
 gi|327191391|gb|EGE58417.1| ribosomal protein S3 [Rhizobium etli CNPAF512]
          Length = 244

 Score =  320 bits (820), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 151/227 (66%), Positives = 189/227 (83%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI FRLG+N TW+SRWFA  +EYG LLHEDLK+R+++   LKQAG++K++IER 
Sbjct: 1   MGQKINPIGFRLGINRTWDSRWFADNAEYGQLLHEDLKMRKFVMSELKQAGISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPGLIIG+KG DI+K+RKKLS+MTNSE HL++ EV KPE++ATL+AQSI
Sbjct: 61  HKKCRVTIHSARPGLIIGRKGADIDKLRKKLSDMTNSETHLNIVEVRKPEVDATLVAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+K+  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIKITCAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYGTA AETA+G CGIKV++  + E+ + D    A+E R +E D+
Sbjct: 181 DIDYGTAEAETAFGICGIKVWI-FKGEILEHDPM--ASERRALEGDA 224


>gi|15889236|ref|NP_354917.1| 30S ribosomal protein S3 [Agrobacterium tumefaciens str. C58]
 gi|27734508|sp|Q8UE24|RS3_AGRT5 RecName: Full=30S ribosomal protein S3
 gi|15157063|gb|AAK87702.1| 30S ribosomal protein S3 [Agrobacterium tumefaciens str. C58]
          Length = 243

 Score =  320 bits (820), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 157/227 (69%), Positives = 186/227 (81%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI FRLG+N TW+SRW+A  +EYG LLHEDLKIR YL   LKQAG+AK++IER 
Sbjct: 1   MGQKINPIGFRLGINRTWDSRWYADTAEYGKLLHEDLKIRAYLIKELKQAGIAKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPGLIIGKKG DIEK+RKKLS MTNSE HL++ EV KPEI+ATL+AQSI
Sbjct: 61  HKKCRVTIHSARPGLIIGKKGADIEKLRKKLSEMTNSETHLNIVEVRKPEIDATLVAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+K+   GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIKITCGGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYGTA AETA+G CGIKV++  + E+ + D    A+E R +E D+
Sbjct: 181 DIDYGTAEAETAFGICGIKVWI-FKGEILEHDPM--ASERRGLEGDA 224


>gi|116251546|ref|YP_767384.1| 30S ribosomal protein S3 [Rhizobium leguminosarum bv. viciae 3841]
 gi|241204171|ref|YP_002975267.1| 30S ribosomal protein S3 [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|123261672|sp|Q1MID5|RS3_RHIL3 RecName: Full=30S ribosomal protein S3
 gi|115256194|emb|CAK07275.1| putative 30S ribosomal protein S3 [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|240858061|gb|ACS55728.1| ribosomal protein S3 [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 243

 Score =  319 bits (818), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 151/227 (66%), Positives = 188/227 (82%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI FRLG+N TW+SRWFA  +EYG LLHEDLK+R+++   LKQAG++K++IER 
Sbjct: 1   MGQKINPIGFRLGINRTWDSRWFADNAEYGQLLHEDLKMRKFVMSELKQAGISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPGLIIG+KG DI+K+RKKLS MTNSE HL++ EV KPE++ATL+AQSI
Sbjct: 61  HKKCRVTIHSARPGLIIGRKGADIDKLRKKLSEMTNSETHLNIVEVRKPEVDATLVAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+K+  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIKITCAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYGTA AETA+G CGIKV++  + E+ + D    A+E R +E D+
Sbjct: 181 DIDYGTAEAETAFGICGIKVWI-FKGEILEHDPM--ASERRAMEGDA 224


>gi|325293330|ref|YP_004279194.1| 30S ribosomal protein S3 [Agrobacterium sp. H13-3]
 gi|325061183|gb|ADY64874.1| 30S ribosomal protein S3 [Agrobacterium sp. H13-3]
          Length = 243

 Score =  319 bits (817), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 156/227 (68%), Positives = 186/227 (81%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI FRLG+N TW+SRW+A  +EYG LLHEDLKIR YL   LKQAG+AK++IER 
Sbjct: 1   MGQKINPIGFRLGINRTWDSRWYADTAEYGKLLHEDLKIRAYLIKELKQAGIAKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPGLIIGKKG DIEK+RKKLS MTNSE HL++ EV KPEI+ATL+AQSI
Sbjct: 61  HKKCRVTIHSARPGLIIGKKGADIEKLRKKLSEMTNSETHLNIVEVRKPEIDATLVAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKR+VQSAMR GA+G+K+   GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRSVQSAMRLGAEGIKITCGGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYGTA AETA+G CGIKV++  + E+ + D    A+E R +E D+
Sbjct: 181 DIDYGTAEAETAFGICGIKVWI-FKGEILEHDPM--ASERRGLEGDA 224


>gi|222085681|ref|YP_002544211.1| ribosomal protein S3 [Agrobacterium radiobacter K84]
 gi|254764507|sp|B9JDT4|RS3_AGRRK RecName: Full=30S ribosomal protein S3
 gi|221723129|gb|ACM26285.1| ribosomal protein S3 [Agrobacterium radiobacter K84]
          Length = 241

 Score =  318 bits (815), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 152/227 (66%), Positives = 187/227 (82%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI FRLG+N TW+SRWFA  +EYG LLHEDLK+R+++   LKQAG++K++IER 
Sbjct: 1   MGQKINPIGFRLGINRTWDSRWFADNAEYGQLLHEDLKMRKFVMDELKQAGISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPGLIIGKKG DI+K+RKKLS+MTNSE HL++ EV KPEI+A L+AQSI
Sbjct: 61  HKKCRVTIHSARPGLIIGKKGADIDKLRKKLSDMTNSETHLNIVEVRKPEIDAVLVAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+K+   GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIKITCGGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYGTA AETA+G CGIKV++  + E+ + D    A+E R +E D+
Sbjct: 181 DIDYGTAEAETAFGICGIKVWI-FKGEILEHDPM--ASERRALEGDA 224


>gi|163760805|ref|ZP_02167884.1| 30S ribosomal protein S3 [Hoeflea phototrophica DFL-43]
 gi|162281849|gb|EDQ32141.1| 30S ribosomal protein S3 [Hoeflea phototrophica DFL-43]
          Length = 234

 Score =  315 bits (806), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 149/227 (65%), Positives = 184/227 (81%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI FRLG+N TW+SRWFA  +EYG LLHEDLKIR+YL   LKQAG++K++IER 
Sbjct: 1   MGQKINPIGFRLGINRTWDSRWFADNAEYGKLLHEDLKIRKYLLAELKQAGISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPGLIIGKKG DIEK+R+KL  MT SE HL++ EV KPE++ATL+AQSI
Sbjct: 61  HKKCRVTIHAARPGLIIGKKGADIEKLRRKLGEMTQSETHLNIVEVRKPEVDATLVAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR+ FRRAMKR+VQSAMR GA+G+K+   GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRIAFRRAMKRSVQSAMRLGAEGIKITCGGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYGTA A+TAYG CG+KV++  + E+ + D    A+E R  E D+
Sbjct: 181 DIDYGTAEAKTAYGICGVKVWI-FKGEILEHDPM--ASERRATEGDA 224


>gi|294852564|ref|ZP_06793237.1| 30S ribosomal protein S3 [Brucella sp. NVSL 07-0026]
 gi|294821153|gb|EFG38152.1| 30S ribosomal protein S3 [Brucella sp. NVSL 07-0026]
          Length = 236

 Score =  310 bits (794), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 151/227 (66%), Positives = 184/227 (81%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRW+A   EYG LLHED+KIRE+L   LKQA ++KI+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWYANTGEYGKLLHEDVKIREFLTEELKQAAISKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG+IIGKKG DIEK+RKKLS MTN++  L++ EV KPE++ATLIAQSI
Sbjct: 61  HKKCRVTIHSARPGIIIGKKGADIEKLRKKLSEMTNADTSLNIVEVRKPEVDATLIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYGTA A+TAYG CG+KV+V  + E+ + DS   A+E R VE D+
Sbjct: 181 DIDYGTAEAKTAYGICGVKVWV-FKGEILEHDSM--ASERRAVEGDN 224


>gi|17987046|ref|NP_539680.1| 30S ribosomal protein S3 [Brucella melitensis bv. 1 str. 16M]
 gi|225852724|ref|YP_002732957.1| 30S ribosomal protein S3 [Brucella melitensis ATCC 23457]
 gi|256044877|ref|ZP_05447781.1| 30S ribosomal protein S3 [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113781|ref|ZP_05454585.1| 30S ribosomal protein S3 [Brucella melitensis bv. 3 str. Ether]
 gi|256263786|ref|ZP_05466318.1| 30S ribosomal protein S3 [Brucella melitensis bv. 2 str. 63/9]
 gi|260565521|ref|ZP_05836005.1| 30S ribosomal protein S3 [Brucella melitensis bv. 1 str. 16M]
 gi|265991304|ref|ZP_06103861.1| 30S ribosomal protein S3 [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995141|ref|ZP_06107698.1| 30S ribosomal protein S3 [Brucella melitensis bv. 3 str. Ether]
 gi|27734517|sp|Q8YHN4|RS3_BRUME RecName: Full=30S ribosomal protein S3
 gi|254764516|sp|C0RJJ5|RS3_BRUMB RecName: Full=30S ribosomal protein S3
 gi|17982702|gb|AAL51944.1| ssu ribosomal protein s3p [Brucella melitensis bv. 1 str. 16M]
 gi|225641089|gb|ACO01003.1| ribosomal protein S3 [Brucella melitensis ATCC 23457]
 gi|260151589|gb|EEW86683.1| 30S ribosomal protein S3 [Brucella melitensis bv. 1 str. 16M]
 gi|262766254|gb|EEZ12043.1| 30S ribosomal protein S3 [Brucella melitensis bv. 3 str. Ether]
 gi|263002088|gb|EEZ14663.1| 30S ribosomal protein S3 [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093914|gb|EEZ17848.1| 30S ribosomal protein S3 [Brucella melitensis bv. 2 str. 63/9]
 gi|326409249|gb|ADZ66314.1| 30S ribosomal protein S3 [Brucella melitensis M28]
 gi|326538957|gb|ADZ87172.1| ribosomal protein S3 [Brucella melitensis M5-90]
          Length = 236

 Score =  308 bits (790), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 151/227 (66%), Positives = 183/227 (80%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLGVN TW+SRW+A   EYG LLHED+KIRE+L   LKQA ++KI+IER 
Sbjct: 1   MGQKINPIGLRLGVNRTWDSRWYANTGEYGKLLHEDVKIREFLTEELKQAAISKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG+IIGKKG DIEK+RKKLS MTN++  L++ EV KPE++ATLIAQSI
Sbjct: 61  HKKCRVTIHSARPGIIIGKKGADIEKLRKKLSEMTNADTSLNIVEVRKPEVDATLIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYGTA A+TAYG CG+KV+V  + E+ + D    A+E R VE D+
Sbjct: 181 DIDYGTAEAKTAYGICGVKVWV-FKGEILEHDPM--ASERRAVEGDN 224


>gi|153009292|ref|YP_001370507.1| 30S ribosomal protein S3 [Ochrobactrum anthropi ATCC 49188]
 gi|239832116|ref|ZP_04680445.1| ribosomal protein S3 [Ochrobactrum intermedium LMG 3301]
 gi|189045024|sp|A6X0C4|RS3_OCHA4 RecName: Full=30S ribosomal protein S3
 gi|151561180|gb|ABS14678.1| ribosomal protein S3 [Ochrobactrum anthropi ATCC 49188]
 gi|239824383|gb|EEQ95951.1| ribosomal protein S3 [Ochrobactrum intermedium LMG 3301]
          Length = 236

 Score =  308 bits (790), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 151/227 (66%), Positives = 183/227 (80%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRW+A   EYG LLHED+KIRE+L   LKQA ++KI+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWYANTGEYGKLLHEDVKIREFLTEELKQAAISKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG+IIGKKG DIEK+RKKLS MTN++  L++ EV KPEI+ATLIAQSI
Sbjct: 61  HKKCRVTIHSARPGIIIGKKGADIEKLRKKLSEMTNADTSLNIVEVRKPEIDATLIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYGTA A+TAYG CG+KV+V  + E+ + D    A+E R VE D+
Sbjct: 181 DIDYGTAEAKTAYGICGVKVWV-FKGEILEHDPM--ASERRAVEGDN 224


>gi|23502104|ref|NP_698231.1| 30S ribosomal protein S3 [Brucella suis 1330]
 gi|62290138|ref|YP_221931.1| 30S ribosomal protein S3 [Brucella abortus bv. 1 str. 9-941]
 gi|82700061|ref|YP_414635.1| 30S ribosomal protein S3 [Brucella melitensis biovar Abortus 2308]
 gi|148559744|ref|YP_001259147.1| 30S ribosomal protein S3 [Brucella ovis ATCC 25840]
 gi|189024376|ref|YP_001935144.1| Ribosomal protein S3 [Brucella abortus S19]
 gi|225627697|ref|ZP_03785734.1| ribosomal protein S3 [Brucella ceti str. Cudo]
 gi|237815646|ref|ZP_04594643.1| ribosomal protein S3 [Brucella abortus str. 2308 A]
 gi|254689447|ref|ZP_05152701.1| 30S ribosomal protein S3 [Brucella abortus bv. 6 str. 870]
 gi|254693932|ref|ZP_05155760.1| 30S ribosomal protein S3 [Brucella abortus bv. 3 str. Tulya]
 gi|254697582|ref|ZP_05159410.1| 30S ribosomal protein S3 [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701968|ref|ZP_05163796.1| 30S ribosomal protein S3 [Brucella suis bv. 5 str. 513]
 gi|254710298|ref|ZP_05172109.1| 30S ribosomal protein S3 [Brucella pinnipedialis B2/94]
 gi|254714295|ref|ZP_05176106.1| 30S ribosomal protein S3 [Brucella ceti M644/93/1]
 gi|254717732|ref|ZP_05179543.1| 30S ribosomal protein S3 [Brucella ceti M13/05/1]
 gi|254719285|ref|ZP_05181096.1| 30S ribosomal protein S3 [Brucella sp. 83/13]
 gi|254730476|ref|ZP_05189054.1| 30S ribosomal protein S3 [Brucella abortus bv. 4 str. 292]
 gi|256031792|ref|ZP_05445406.1| 30S ribosomal protein S3 [Brucella pinnipedialis M292/94/1]
 gi|256061307|ref|ZP_05451457.1| 30S ribosomal protein S3 [Brucella neotomae 5K33]
 gi|256159962|ref|ZP_05457680.1| 30S ribosomal protein S3 [Brucella ceti M490/95/1]
 gi|256255193|ref|ZP_05460729.1| 30S ribosomal protein S3 [Brucella ceti B1/94]
 gi|256257693|ref|ZP_05463229.1| 30S ribosomal protein S3 [Brucella abortus bv. 9 str. C68]
 gi|256369651|ref|YP_003107161.1| 30S ribosomal protein S3 [Brucella microti CCM 4915]
 gi|260168926|ref|ZP_05755737.1| 30S ribosomal protein S3 [Brucella sp. F5/99]
 gi|260546686|ref|ZP_05822425.1| ribosomal protein S3 [Brucella abortus NCTC 8038]
 gi|260754970|ref|ZP_05867318.1| 30S ribosomal protein S3 [Brucella abortus bv. 6 str. 870]
 gi|260758186|ref|ZP_05870534.1| 30S ribosomal protein S3 [Brucella abortus bv. 4 str. 292]
 gi|260762012|ref|ZP_05874355.1| 30S ribosomal protein S3 [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883979|ref|ZP_05895593.1| 30S ribosomal protein S3 [Brucella abortus bv. 9 str. C68]
 gi|261214224|ref|ZP_05928505.1| 30S ribosomal protein S3 [Brucella abortus bv. 3 str. Tulya]
 gi|261219575|ref|ZP_05933856.1| 30S ribosomal protein S3 [Brucella ceti M13/05/1]
 gi|261222389|ref|ZP_05936670.1| 30S ribosomal protein S3 [Brucella ceti B1/94]
 gi|261317861|ref|ZP_05957058.1| 30S ribosomal protein S3 [Brucella pinnipedialis B2/94]
 gi|261322070|ref|ZP_05961267.1| 30S ribosomal protein S3 [Brucella ceti M644/93/1]
 gi|261325314|ref|ZP_05964511.1| 30S ribosomal protein S3 [Brucella neotomae 5K33]
 gi|261752536|ref|ZP_05996245.1| 30S ribosomal protein S3 [Brucella suis bv. 5 str. 513]
 gi|261758419|ref|ZP_06002128.1| ribosomal protein S3 [Brucella sp. F5/99]
 gi|265984285|ref|ZP_06097020.1| 30S ribosomal protein S3 [Brucella sp. 83/13]
 gi|265988890|ref|ZP_06101447.1| 30S ribosomal protein S3 [Brucella pinnipedialis M292/94/1]
 gi|265998354|ref|ZP_06110911.1| 30S ribosomal protein S3 [Brucella ceti M490/95/1]
 gi|297248533|ref|ZP_06932251.1| 30S ribosomal protein S3 [Brucella abortus bv. 5 str. B3196]
 gi|306838037|ref|ZP_07470895.1| ribosomal protein S3 [Brucella sp. NF 2653]
 gi|306840307|ref|ZP_07473079.1| ribosomal protein S3 [Brucella sp. BO2]
 gi|306844131|ref|ZP_07476725.1| ribosomal protein S3 [Brucella sp. BO1]
 gi|27734491|sp|P59180|RS3_BRUSU RecName: Full=30S ribosomal protein S3
 gi|75505262|sp|Q57CR4|RS3_BRUAB RecName: Full=30S ribosomal protein S3
 gi|91207642|sp|Q2YRA1|RS3_BRUA2 RecName: Full=30S ribosomal protein S3
 gi|189044955|sp|A5VR00|RS3_BRUO2 RecName: Full=30S ribosomal protein S3
 gi|226697671|sp|B2S673|RS3_BRUA1 RecName: Full=30S ribosomal protein S3
 gi|23348064|gb|AAN30146.1| ribosomal protein S3 [Brucella suis 1330]
 gi|62196270|gb|AAX74570.1| RpsC, ribosomal protein S3 [Brucella abortus bv. 1 str. 9-941]
 gi|82616162|emb|CAJ11205.1| Ribosomal protein S3:Type 2 KH domain:KH domain:Bacterial ribosomal
           protein S3 [Brucella melitensis biovar Abortus 2308]
 gi|148371001|gb|ABQ60980.1| ribosomal protein S3 [Brucella ovis ATCC 25840]
 gi|189019948|gb|ACD72670.1| Ribosomal protein S3 [Brucella abortus S19]
 gi|225617702|gb|EEH14747.1| ribosomal protein S3 [Brucella ceti str. Cudo]
 gi|237788944|gb|EEP63155.1| ribosomal protein S3 [Brucella abortus str. 2308 A]
 gi|255999813|gb|ACU48212.1| 30S ribosomal protein S3 [Brucella microti CCM 4915]
 gi|260095736|gb|EEW79613.1| ribosomal protein S3 [Brucella abortus NCTC 8038]
 gi|260668504|gb|EEX55444.1| 30S ribosomal protein S3 [Brucella abortus bv. 4 str. 292]
 gi|260672444|gb|EEX59265.1| 30S ribosomal protein S3 [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675078|gb|EEX61899.1| 30S ribosomal protein S3 [Brucella abortus bv. 6 str. 870]
 gi|260873507|gb|EEX80576.1| 30S ribosomal protein S3 [Brucella abortus bv. 9 str. C68]
 gi|260915831|gb|EEX82692.1| 30S ribosomal protein S3 [Brucella abortus bv. 3 str. Tulya]
 gi|260920973|gb|EEX87626.1| 30S ribosomal protein S3 [Brucella ceti B1/94]
 gi|260924664|gb|EEX91232.1| 30S ribosomal protein S3 [Brucella ceti M13/05/1]
 gi|261294760|gb|EEX98256.1| 30S ribosomal protein S3 [Brucella ceti M644/93/1]
 gi|261297084|gb|EEY00581.1| 30S ribosomal protein S3 [Brucella pinnipedialis B2/94]
 gi|261301294|gb|EEY04791.1| 30S ribosomal protein S3 [Brucella neotomae 5K33]
 gi|261738403|gb|EEY26399.1| ribosomal protein S3 [Brucella sp. F5/99]
 gi|261742289|gb|EEY30215.1| 30S ribosomal protein S3 [Brucella suis bv. 5 str. 513]
 gi|262552822|gb|EEZ08812.1| 30S ribosomal protein S3 [Brucella ceti M490/95/1]
 gi|264661087|gb|EEZ31348.1| 30S ribosomal protein S3 [Brucella pinnipedialis M292/94/1]
 gi|264662877|gb|EEZ33138.1| 30S ribosomal protein S3 [Brucella sp. 83/13]
 gi|297175702|gb|EFH35049.1| 30S ribosomal protein S3 [Brucella abortus bv. 5 str. B3196]
 gi|306275574|gb|EFM57306.1| ribosomal protein S3 [Brucella sp. BO1]
 gi|306289706|gb|EFM60895.1| ribosomal protein S3 [Brucella sp. BO2]
 gi|306406961|gb|EFM63182.1| ribosomal protein S3 [Brucella sp. NF 2653]
          Length = 236

 Score =  308 bits (788), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 150/227 (66%), Positives = 183/227 (80%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRW+A   EYG LLHED+KIRE+L   LKQA ++KI+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWYANTGEYGKLLHEDVKIREFLTEELKQAAISKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG+IIGKKG DIEK+RKKLS MTN++  L++ EV KPE++ATLIAQSI
Sbjct: 61  HKKCRVTIHSARPGIIIGKKGADIEKLRKKLSEMTNADTSLNIVEVRKPEVDATLIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYGTA A+TAYG CG+KV+V  + E+ + D    A+E R VE D+
Sbjct: 181 DIDYGTAEAKTAYGICGVKVWV-FKGEILEHDPM--ASERRAVEGDN 224


>gi|163843493|ref|YP_001627897.1| 30S ribosomal protein S3 [Brucella suis ATCC 23445]
 gi|189044956|sp|B0CH26|RS3_BRUSI RecName: Full=30S ribosomal protein S3
 gi|163674216|gb|ABY38327.1| ribosomal protein S3 [Brucella suis ATCC 23445]
          Length = 236

 Score =  307 bits (786), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 149/227 (65%), Positives = 183/227 (80%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRW+A   EYG LLHED+KIRE+L   LKQA ++KI+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWYANTGEYGKLLHEDVKIREFLTEELKQAAISKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG+IIGKKG DIEK+RKKLS MTN++  L++ EV KPE++ATLIAQ+I
Sbjct: 61  HKKCRVTIHSARPGIIIGKKGADIEKLRKKLSEMTNADTSLNIVEVRKPEVDATLIAQTI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYGTA A+TAYG CG+KV+V  + E+ + D    A+E R VE D+
Sbjct: 181 DIDYGTAEAKTAYGICGVKVWV-FKGEILEHDPM--ASERRAVEGDN 224


>gi|110634024|ref|YP_674232.1| 30S ribosomal protein S3 [Mesorhizobium sp. BNC1]
 gi|123162296|sp|Q11HQ8|RS3_MESSB RecName: Full=30S ribosomal protein S3
 gi|110285008|gb|ABG63067.1| SSU ribosomal protein S3P [Chelativorans sp. BNC1]
          Length = 235

 Score =  306 bits (785), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 147/224 (65%), Positives = 182/224 (81%), Gaps = 3/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N TW+SRWFA  +EYG LLHEDLKIR Y++  LKQA ++K++IER 
Sbjct: 1   MGQKVNPIGLRLGINRTWDSRWFANTNEYGQLLHEDLKIRTYIENELKQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPGLIIGKKG DIEK+R+K++ MTN+E HL++ EV KPEI+A LIAQSI
Sbjct: 61  HKKCRVTIHSARPGLIIGKKGADIEKLRRKITQMTNAETHLNIVEVRKPEIDARLIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  +GRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCTGRLGGAEIARIEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVE 224
            IDYGTA A+TAYG CG+KV+V  + E+ + D    A+E R VE
Sbjct: 181 DIDYGTAEAKTAYGVCGVKVWV-FKGEILEHDPM--ASERRAVE 221


>gi|319783326|ref|YP_004142802.1| ribosomal protein S3 [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317169214|gb|ADV12752.1| ribosomal protein S3 [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 241

 Score =  306 bits (785), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 146/227 (64%), Positives = 181/227 (79%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N TW+SRWFA   EYG LLHED+KIR+YL+  LKQA ++K++IER 
Sbjct: 1   MGQKVNPIGLRLGINRTWDSRWFANTGEYGKLLHEDIKIRKYLEKELKQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPGLIIGKKG DIEK+RKKL  MT SE HL++ EV KPEI+ATL+AQSI
Sbjct: 61  HKKCRVTIHAARPGLIIGKKGADIEKLRKKLMEMTKSETHLNIVEVRKPEIDATLVAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR+ FRRAMKRAVQSAMR GA+G+++  +GRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIAFRRAMKRAVQSAMRLGAEGIRINCAGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            +DYGTA A TAYG CG+KV+V  + E+ + D    A+E R  E D+
Sbjct: 181 DVDYGTAEAHTAYGICGVKVWV-FKGEILEHDPM--ASERRASESDA 224


>gi|254706592|ref|ZP_05168420.1| 30S ribosomal protein S3 [Brucella pinnipedialis M163/99/10]
 gi|261314051|ref|ZP_05953248.1| 30S ribosomal protein S3 [Brucella pinnipedialis M163/99/10]
 gi|261303077|gb|EEY06574.1| 30S ribosomal protein S3 [Brucella pinnipedialis M163/99/10]
          Length = 236

 Score =  306 bits (784), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 149/227 (65%), Positives = 182/227 (80%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRW+A   EYG LLHED+KIRE+L   LKQA ++KI+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWYANTGEYGKLLHEDVKIREFLTEELKQAAISKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG+IIGKKG DIEK+RKKLS MTN++  L++ EV KPE++ATLIAQSI
Sbjct: 61  HKKCRVTIHSARPGIIIGKKGADIEKLRKKLSEMTNADTSLNIVEVRKPEVDATLIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL G E++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGTEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYGTA A+TAYG CG+KV+V  + E+ + D    A+E R VE D+
Sbjct: 181 DIDYGTAEAKTAYGICGVKVWV-FKGEILEHDPM--ASERRAVEGDN 224


>gi|114704490|ref|ZP_01437398.1| 30S ribosomal protein S3 [Fulvimarina pelagi HTCC2506]
 gi|114539275|gb|EAU42395.1| 30S ribosomal protein S3 [Fulvimarina pelagi HTCC2506]
          Length = 235

 Score =  305 bits (782), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 148/223 (66%), Positives = 180/223 (80%), Gaps = 3/223 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRLG+N TW+SRWFA G EYG+LLHEDLKIR +L   LKQA V+KI+IER 
Sbjct: 1   MGQKINPTGFRLGINRTWDSRWFADGREYGSLLHEDLKIRNFLLDELKQAAVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CRI ++SARPG++IGKKG DIEK+RKKLS MT++E H+++ EV KPE +A L+AQSI
Sbjct: 61  HKKCRISIHSARPGIVIGKKGADIEKLRKKLSTMTDAETHINIVEVRKPETDAALVAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++   GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCGGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVV 223
            +DYGTA AETAYG CG+KV++  + E+ + D    A+E R V
Sbjct: 181 DVDYGTAEAETAYGICGVKVWI-FKGEILEHDPM--ASERRQV 220


>gi|161619183|ref|YP_001593070.1| 30S ribosomal protein S3 [Brucella canis ATCC 23365]
 gi|254704512|ref|ZP_05166340.1| 30S ribosomal protein S3 [Brucella suis bv. 3 str. 686]
 gi|260566244|ref|ZP_05836714.1| ribosomal protein S3 [Brucella suis bv. 4 str. 40]
 gi|261755195|ref|ZP_05998904.1| 30S ribosomal protein S3 [Brucella suis bv. 3 str. 686]
 gi|189044954|sp|A9M5P4|RS3_BRUC2 RecName: Full=30S ribosomal protein S3
 gi|161335994|gb|ABX62299.1| ribosomal protein S3 [Brucella canis ATCC 23365]
 gi|260155762|gb|EEW90842.1| ribosomal protein S3 [Brucella suis bv. 4 str. 40]
 gi|261744948|gb|EEY32874.1| 30S ribosomal protein S3 [Brucella suis bv. 3 str. 686]
          Length = 236

 Score =  305 bits (782), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 149/227 (65%), Positives = 182/227 (80%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRW+A   EYG LLHED+KIRE+L   LKQA ++KI+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWYANTGEYGKLLHEDVKIREFLTEELKQAAISKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG+IIGKKG DIEK+RKKLS MTN++  L++ EV KPE++ATLIAQ I
Sbjct: 61  HKKCRVTIHSARPGIIIGKKGADIEKLRKKLSEMTNADTSLNIVEVRKPEVDATLIAQLI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYGTA A+TAYG CG+KV+V  + E+ + D    A+E R VE D+
Sbjct: 181 DIDYGTAEAKTAYGICGVKVWV-FKGEILEHDPM--ASERRAVEGDN 224


>gi|13470557|ref|NP_102126.1| 30S ribosomal protein S3 [Mesorhizobium loti MAFF303099]
 gi|27734527|sp|Q98N51|RS3_RHILO RecName: Full=30S ribosomal protein S3
 gi|14021299|dbj|BAB47912.1| 30S ribosomal protein S3 [Mesorhizobium loti MAFF303099]
          Length = 241

 Score =  305 bits (781), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 146/224 (65%), Positives = 179/224 (79%), Gaps = 3/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N TW+SRWFA   EYG LLHED+KIR+YL+  LKQA ++K++IER 
Sbjct: 1   MGQKVNPIGLRLGINRTWDSRWFANTGEYGKLLHEDIKIRKYLEKELKQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPGLIIGKKG DIEK+RKKL  MT SE HL++ EV KPEI+ATL+AQSI
Sbjct: 61  HKKCRVTIHAARPGLIIGKKGADIEKLRKKLMEMTKSETHLNIVEVRKPEIDATLVAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR+ FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVE 224
            +DYGTA A TAYG CG+KV+V  + E+ + D    A+E R  E
Sbjct: 181 DVDYGTAEANTAYGICGVKVWV-FKGEILEHDPM--ASERRATE 221


>gi|260468548|ref|ZP_05813715.1| ribosomal protein S3 [Mesorhizobium opportunistum WSM2075]
 gi|259028704|gb|EEW30013.1| ribosomal protein S3 [Mesorhizobium opportunistum WSM2075]
          Length = 241

 Score =  304 bits (778), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 145/224 (64%), Positives = 179/224 (79%), Gaps = 3/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N TW+SRWFA   EYG LLHED+KIR+YL+  LKQA ++K++IER 
Sbjct: 1   MGQKVNPIGLRLGINRTWDSRWFANTGEYGKLLHEDIKIRKYLEKELKQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPGLIIGKKG DIEK+RKKL  MT SE HL++ EV KPEI+ATL+AQSI
Sbjct: 61  HKKCRVTIHAARPGLIIGKKGADIEKLRKKLMEMTKSETHLNIVEVRKPEIDATLVAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR+ FRRAMKRAVQSAMR GA+G+++  +GRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIAFRRAMKRAVQSAMRLGAEGIRINCAGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVE 224
            +DYGTA A TAYG CG+KV+V  + E+ + D    A+E R  E
Sbjct: 181 DVDYGTAEANTAYGICGVKVWV-FKGEILEHDPM--ASERRATE 221


>gi|90417759|ref|ZP_01225671.1| ribosomal protein S3 [Aurantimonas manganoxydans SI85-9A1]
 gi|90337431|gb|EAS51082.1| ribosomal protein S3 [Aurantimonas manganoxydans SI85-9A1]
          Length = 235

 Score =  303 bits (776), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 148/223 (66%), Positives = 179/223 (80%), Gaps = 3/223 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRLG+N TW+SRW+A   EYG LLHEDLKIR YL   LKQA V+KI+IER 
Sbjct: 1   MGQKINPTGFRLGINRTWDSRWYANTGEYGHLLHEDLKIRAYLLNELKQAAVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CRI ++SARPG++IGKKG DIEK+RKKL+ MTN+E H+++ EV KPE +ATL+AQSI
Sbjct: 61  HKKCRITIHSARPGIVIGKKGADIEKLRKKLAAMTNAETHINIVEVRKPETDATLVAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++   GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCGGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVV 223
            IDYGTA A+TAYG CG+KV++  + E+ + D    A+E R V
Sbjct: 181 DIDYGTAEAKTAYGICGVKVWI-FKGEILEHDPM--ASERRQV 220


>gi|49475788|ref|YP_033829.1| 30S ribosomal protein S3 [Bartonella henselae str. Houston-1]
 gi|61215538|sp|Q6G2X1|RS3_BARHE RecName: Full=30S ribosomal protein S3
 gi|49238595|emb|CAF27836.1| 30S ribosomal protein s3 [Bartonella henselae str. Houston-1]
          Length = 236

 Score =  302 bits (774), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 149/226 (65%), Positives = 180/226 (79%), Gaps = 3/226 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLGVN TW+SRW+A   EYG LLHEDLKIR Y+   LKQA V+KI+IER 
Sbjct: 1   MGQKINPIGLRLGVNRTWDSRWYADSGEYGRLLHEDLKIRLYVLEELKQAAVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +YSARPGLIIGKKG DIEK+R+KLS MTN+E  L++ E+ KPEI+AT+IAQSI
Sbjct: 61  HKKCRVTIYSARPGLIIGKKGADIEKLRRKLSEMTNAETSLNIVEIHKPEIDATIIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSA+R GA+G+++  SGRL GAE++R E Y EGRVPL TLR+
Sbjct: 121 AQQLERRVAFRRAMKRAVQSALRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRS 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKD 226
            +DYGTA A+TAYG CG+KV+V  + E+ + D    A+E R  E D
Sbjct: 181 DVDYGTAEAKTAYGICGVKVWV-FKGEILEYDPM--ASERRAAEVD 223


>gi|240850829|ref|YP_002972229.1| 30S ribosomal protein S3 [Bartonella grahamii as4aup]
 gi|240267952|gb|ACS51540.1| 30S ribosomal protein S3 [Bartonella grahamii as4aup]
          Length = 236

 Score =  302 bits (774), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 148/226 (65%), Positives = 180/226 (79%), Gaps = 3/226 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLGVN TW+SRW+A   EYG LLHEDLKIR Y+   LKQA ++K++IER 
Sbjct: 1   MGQKINPIGLRLGVNRTWDSRWYADSGEYGRLLHEDLKIRSYVLEELKQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CRI ++SARPGLIIGKKG DIEK+R+KLS MT++E  L++ E+ KPEI+AT+IAQSI
Sbjct: 61  HKKCRITIHSARPGLIIGKKGADIEKLRRKLSEMTDAETSLNIVEIRKPEIDATIIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLR+
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRS 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKD 226
            +DYGTA A+TAYG CGIKV+V  + E+ + D    A+E R  E D
Sbjct: 181 DVDYGTAEAKTAYGICGIKVWV-FKGEILEHDPM--ASERRATEVD 223


>gi|121602435|ref|YP_989003.1| 30S ribosomal protein S3 [Bartonella bacilliformis KC583]
 gi|121602523|ref|YP_988973.1| 30S ribosomal protein S3 [Bartonella bacilliformis KC583]
 gi|152060847|sp|A1USM0|RS3_BARBK RecName: Full=30S ribosomal protein S3
 gi|120614612|gb|ABM45213.1| ribosomal protein S3 [Bartonella bacilliformis KC583]
 gi|120614700|gb|ABM45301.1| ribosomal protein S3 [Bartonella bacilliformis KC583]
          Length = 236

 Score =  302 bits (773), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 145/227 (63%), Positives = 178/227 (78%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLGVN TW+SRW+A   EYG LLHEDLKIR Y+   LKQA ++K++IER 
Sbjct: 1   MGQKINPIGLRLGVNQTWSSRWYADSGEYGRLLHEDLKIRSYVMEELKQAAISKVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPGLIIGKKG DIEK+R +LS MTN+E  L++ E+ KPEI+AT+IAQS+
Sbjct: 61  HKKCRVTIHSARPGLIIGKKGADIEKLRHQLSEMTNAETSLNIVEIRKPEIDATIIAQSV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            +DY TA A TAYG CG+KV+V  + E+ + D    A+EHR    D+
Sbjct: 181 DVDYSTAEARTAYGVCGVKVWV-FKGEILEHDPM--ASEHRATRNDN 224


>gi|319408759|emb|CBI82416.1| 30S ribosomal protein S3 [Bartonella schoenbuchensis R1]
          Length = 236

 Score =  301 bits (772), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 149/226 (65%), Positives = 182/226 (80%), Gaps = 3/226 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLGVN TW+SRW+A   EYG LLHEDLKIR Y+   LKQA ++K++IER 
Sbjct: 1   MGQKINPIGLRLGVNRTWDSRWYADSGEYGRLLHEDLKIRLYVIEELKQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CRII++SARPGLIIGKKG DIEK+R KLS MTN+E  L++ E+ KPEI+AT+IAQSI
Sbjct: 61  HKKCRIIIHSARPGLIIGKKGADIEKLRCKLSEMTNAETSLNIVEIRKPEIDATIIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKD 226
            +DYGTA A+TAYG CG+KV+V  + E+ + +    A+E+R +E D
Sbjct: 181 DVDYGTAEAKTAYGICGVKVWV-FKGEILEHNPM--ASENRAMESD 223


>gi|49474398|ref|YP_032440.1| 30S ribosomal protein S3 [Bartonella quintana str. Toulouse]
 gi|61215534|sp|Q6FZC8|RS3_BARQU RecName: Full=30S ribosomal protein S3
 gi|49239902|emb|CAF26300.1| 30s ribosomal protein s3 [Bartonella quintana str. Toulouse]
          Length = 236

 Score =  301 bits (772), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 148/226 (65%), Positives = 180/226 (79%), Gaps = 3/226 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLGVN TW+SRW+A   EYG LLHEDL IR Y+   LKQA ++K++IER 
Sbjct: 1   MGQKINPIGLRLGVNRTWDSRWYADSGEYGRLLHEDLSIRLYVLEELKQAAISKVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +YSARPGLIIGKKG DIEK+R+KLS MTN+E  L++ E+ KPEI+AT+IAQSI
Sbjct: 61  HKKCRVTIYSARPGLIIGKKGADIEKLRRKLSEMTNAETSLNIVEIHKPEIDATIIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLR+
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRS 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKD 226
            +DYGTA A+TAYG CG+KV+V  + E+ + D    A+E R VE D
Sbjct: 181 DVDYGTAEAKTAYGICGVKVWV-FKGEILEYDPI--ASERRSVEID 223


>gi|163868644|ref|YP_001609853.1| 30S ribosomal protein S3 [Bartonella tribocorum CIP 105476]
 gi|189044952|sp|A9IW20|RS3_BART1 RecName: Full=30S ribosomal protein S3
 gi|161018300|emb|CAK01858.1| 30S ribosomal protein S3 [Bartonella tribocorum CIP 105476]
          Length = 236

 Score =  301 bits (772), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 146/226 (64%), Positives = 180/226 (79%), Gaps = 3/226 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLGVN TW+SRW+A   EYG LLHEDL+IR Y+   L+QA ++K++IER 
Sbjct: 1   MGQKINPIGLRLGVNRTWDSRWYADSGEYGRLLHEDLRIRSYVLEELRQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPGLIIGKKG DIEK+R+KLS MTN+E  L++ E+ KPEI+AT+IAQSI
Sbjct: 61  HKKCRVTIHSARPGLIIGKKGADIEKLRRKLSEMTNAETSLNIVEIRKPEIDATIIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLR+
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRS 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKD 226
            +DYGTA A+TAYG CGIKV+V  + E+ + D    A+E R  E D
Sbjct: 181 DVDYGTAEAKTAYGICGIKVWV-FKGEILEHDPM--ASERRATEAD 223


>gi|319899093|ref|YP_004159186.1| 30S ribosomal protein S3 [Bartonella clarridgeiae 73]
 gi|319403057|emb|CBI76612.1| 30S ribosomal protein S3 [Bartonella clarridgeiae 73]
          Length = 236

 Score =  301 bits (772), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 148/226 (65%), Positives = 180/226 (79%), Gaps = 3/226 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLGVN TW+SRW+A   EYG LLHEDLKIR Y+   LKQA ++K++IER 
Sbjct: 1   MGQKINPIGLRLGVNRTWDSRWYADSDEYGRLLHEDLKIRLYVIEELKQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CRI ++SARPGLIIGKKG DIEK+R+KLS MTN+E  L++ E+ KPEI++T+IAQSI
Sbjct: 61  HKKCRITIHSARPGLIIGKKGADIEKLRRKLSEMTNAETSLNIIEIRKPEIDSTIIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKD 226
            +DYGTA A+TAYG CG+KV+V  + E+ + D    A+E R  E D
Sbjct: 181 DVDYGTAEAKTAYGICGVKVWV-FKGEILEHDPM--ASERRATEGD 223


>gi|254470501|ref|ZP_05083905.1| ribosomal protein S3 [Pseudovibrio sp. JE062]
 gi|211960812|gb|EEA96008.1| ribosomal protein S3 [Pseudovibrio sp. JE062]
          Length = 238

 Score =  301 bits (771), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 144/224 (64%), Positives = 176/224 (78%), Gaps = 3/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRWFA  +EYG LLHED +IREYL   LKQA V+K++IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWFASKNEYGDLLHEDFRIREYLLKELKQAAVSKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++S RPG++IGKKG DIE++RKKLS MTNSE+HL++ EV KPE +A L+A SI
Sbjct: 61  HKKCRVTIHSGRPGVVIGKKGADIERLRKKLSAMTNSEVHLNIVEVRKPETDAALVAASI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA G+++   GRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAQGIRINCGGRLGGAEIARIEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVE 224
            IDYGTA A TAYG+CG+KV++  + E+ + D    A+E R  E
Sbjct: 181 DIDYGTATAHTAYGACGVKVWI-FKGEILEHDPM--ASERRATE 221


>gi|319407420|emb|CBI81071.1| 30S ribosomal protein S3 [Bartonella sp. 1-1C]
          Length = 236

 Score =  301 bits (770), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 147/226 (65%), Positives = 181/226 (80%), Gaps = 3/226 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRW+A   EYG LLHED+KIR Y+   LKQA V+K++IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWYADSGEYGRLLHEDVKIRLYVVEELKQAAVSKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CRI ++SARPGLIIGK+G DIEK+R+KLS MTN+E  L++ E+ KPEI++T+IAQSI
Sbjct: 61  HKKCRITIHSARPGLIIGKRGADIEKLRRKLSEMTNAETSLNIVEIRKPEIDSTIIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKD 226
            +DYGTA A+TAYG CG+KV+V  + E+ + D    A+E R VE D
Sbjct: 181 DVDYGTAEAKTAYGICGVKVWV-FKGEILEHDPM--ASERRAVEGD 223


>gi|222148372|ref|YP_002549329.1| 30S ribosomal protein S3 [Agrobacterium vitis S4]
 gi|221735360|gb|ACM36323.1| 30S ribosomal protein S3 [Agrobacterium vitis S4]
          Length = 226

 Score =  300 bits (768), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 144/216 (66%), Positives = 175/216 (81%), Gaps = 3/216 (1%)

Query: 12  LGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTHKNCRIIVYSA 71
           +G+N TW+SRWFA  +EYG LLHEDLKIR YL   LKQAG+AK++IER HK CR+ ++SA
Sbjct: 1   MGINRTWDSRWFADNAEYGKLLHEDLKIRAYLMDELKQAGIAKVVIERPHKKCRVTIHSA 60

Query: 72  RPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSIAQQLERRVVFR 131
           RPGLIIGKKG DIEK+RKKLS MTNSE HL++ EV KPE++ATL+AQSIAQQLERR+ FR
Sbjct: 61  RPGLIIGKKGADIEKLRKKLSEMTNSETHLNIVEVRKPEVDATLVAQSIAQQLERRIAFR 120

Query: 132 RAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRAHIDYGTAVAET 191
           RAMKRAVQSAMR GA+G+K+  +GRL GAE++RTE Y EGRVPL TLRA IDYG A A T
Sbjct: 121 RAMKRAVQSAMRLGAEGIKITCAGRLGGAEIARTEWYREGRVPLHTLRADIDYGVAEATT 180

Query: 192 AYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
           AYG CGIKV++  + E+ + D    A+E R +E D+
Sbjct: 181 AYGICGIKVWI-FKGEILEHDPM--ASERRALESDA 213


>gi|319405892|emb|CBI79524.1| 30S ribosomal protein S3 [Bartonella sp. AR 15-3]
          Length = 236

 Score =  299 bits (765), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 147/226 (65%), Positives = 180/226 (79%), Gaps = 3/226 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRW+A   EYG LLHED+KIR Y+   LKQA V+K++IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWYADSGEYGRLLHEDVKIRLYIIEELKQAAVSKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CRI V+SARPGLIIGK+G DIEK+R+KLS MT++E  L++ E+ KPEI+AT+IAQSI
Sbjct: 61  HKKCRITVHSARPGLIIGKRGADIEKLRRKLSEMTDAETSLNIVEIRKPEIDATIIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKD 226
            +DYGTA A+TAYG CG+KV+V  + E+ + D    A+E R  E D
Sbjct: 181 DVDYGTAEAKTAYGICGVKVWV-FKGEILEHDPM--ASERRATEGD 223


>gi|319404419|emb|CBI78022.1| 30S ribosomal protein S3 [Bartonella rochalimae ATCC BAA-1498]
          Length = 236

 Score =  299 bits (765), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/226 (64%), Positives = 181/226 (80%), Gaps = 3/226 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLGVN TW+SRW+A   EYG LLHED+KIR Y+   LKQA ++K++IER 
Sbjct: 1   MGQKINPIGLRLGVNRTWDSRWYADSGEYGRLLHEDVKIRLYVIEELKQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CRI ++SARPGLIIGK+G DIEK+R+KLS MT++E  L++ E+ KPEI++T+IAQSI
Sbjct: 61  HKKCRITIHSARPGLIIGKRGADIEKLRRKLSEMTDAETSLNIVEIRKPEIDSTIIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKD 226
            +DYGTA A+TAYG CG+KV+V  + E+ + D    A+E R VE D
Sbjct: 181 DVDYGTAEAKTAYGICGVKVWV-FKGEILEHDPM--ASERRAVEGD 223


>gi|154253183|ref|YP_001414007.1| 30S ribosomal protein S3 [Parvibaculum lavamentivorans DS-1]
 gi|171769631|sp|A7HWR7|RS3_PARL1 RecName: Full=30S ribosomal protein S3
 gi|154157133|gb|ABS64350.1| ribosomal protein S3 [Parvibaculum lavamentivorans DS-1]
          Length = 236

 Score =  294 bits (753), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 139/224 (62%), Positives = 181/224 (80%), Gaps = 3/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RLG+N TW+SRWFA   EYG LLHED+KIRE L+  LKQAG++KI+IER 
Sbjct: 1   MGHKVNPIGLRLGINRTWDSRWFAGRHEYGKLLHEDIKIREVLEKQLKQAGISKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG++IGKKG DIEK+R+++  +T SE+HL++ EV KPEI+ATL+A++I
Sbjct: 61  HKKCRVAIHTARPGVVIGKKGADIEKLRREIGKITASEVHLNIVEVRKPEIDATLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA G+++  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAGGIRINCAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVE 224
            IDYG A A+TAYG+CG+KV++  + E+ + D    A+E R +E
Sbjct: 181 DIDYGVATAKTAYGTCGVKVWI-YKGEILEHDPM--ASERRALE 221


>gi|154245629|ref|YP_001416587.1| ribosomal protein S3 [Xanthobacter autotrophicus Py2]
 gi|226697776|sp|A7IFY7|RS3_XANP2 RecName: Full=30S ribosomal protein S3
 gi|154159714|gb|ABS66930.1| ribosomal protein S3 [Xanthobacter autotrophicus Py2]
          Length = 252

 Score =  293 bits (750), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 138/227 (60%), Positives = 179/227 (78%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N TW+SRWFA   EYG LLHED+KIRE L   LKQA V+K++IER 
Sbjct: 1   MGQKVNPVGLRLGINRTWDSRWFANKGEYGKLLHEDIKIREMLFKQLKQAAVSKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +YS RPG++IGKKG DI+K+RKK+S MT+SE+ +++ E+ KPEI+A L+A+SI
Sbjct: 61  HKKCRVTIYSGRPGVVIGKKGADIDKLRKKVSEMTSSEVFINIVEIRKPEIDARLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARLEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            +DYGTA A T YG+CG+KV+V  + E+ + D    A + R  E+++
Sbjct: 181 DVDYGTATAFTTYGTCGVKVWV-FKGEILEHDPM--AQDKRQAEQEA 224


>gi|217976761|ref|YP_002360908.1| ribosomal protein S3 [Methylocella silvestris BL2]
 gi|254764535|sp|B8ELF7|RS3_METSB RecName: Full=30S ribosomal protein S3
 gi|217502137|gb|ACK49546.1| ribosomal protein S3 [Methylocella silvestris BL2]
          Length = 239

 Score =  292 bits (748), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 140/226 (61%), Positives = 179/226 (79%), Gaps = 3/226 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N TW+SRWFA  +EYG LLHED+ IR  L   LKQA V+KI+IER 
Sbjct: 1   MGQKVNPIGLRLGINRTWDSRWFAGKNEYGKLLHEDMAIRAALMKTLKQAAVSKIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG++IGKKG DI+KIRK ++ MT+SE+ +++ EV KPEI+ATL+A SI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKIRKLVAKMTDSEVLINIVEVRKPEIDATLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARLEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKD 226
            +DYGTA A TAYG+CGIKV++  + E+ + D    A + ++ E+D
Sbjct: 181 DVDYGTATAHTAYGACGIKVWI-FKGEILEHDPM--AQDKKMAEQD 223


>gi|328543364|ref|YP_004303473.1| 30S ribosomal protein S3 [Polymorphum gilvum SL003B-26A1]
 gi|326413109|gb|ADZ70172.1| 30S ribosomal protein S3 [Polymorphum gilvum SL003B-26A1]
          Length = 242

 Score =  291 bits (746), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 138/224 (61%), Positives = 173/224 (77%), Gaps = 3/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RLG+N TW+SRW+A   EYG LLHED +IREYL   LKQA V+KI+IER 
Sbjct: 1   MGHKVNPIGMRLGINRTWDSRWYANKGEYGTLLHEDFRIREYLMNELKQAAVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++S RPG++IGKKG DIE++RKKL  +T+SE+H+++ EV KPEI+A L+A SI
Sbjct: 61  HKKCRVTIHSGRPGVVIGKKGADIERLRKKLGQITSSEVHINIVEVRKPEIDANLVAASI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA G+++   GRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAQGIRINCGGRLGGAEIARVEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVE 224
            IDYG A A TAYG+CG+KV++  + E+ + D    A+E R  E
Sbjct: 181 DIDYGIATAHTAYGACGVKVWI-FKGEILEHDPM--ASERRASE 221


>gi|158424172|ref|YP_001525464.1| ribosomal protein S3 [Azorhizobium caulinodans ORS 571]
 gi|189044949|sp|A8IAR2|RS3_AZOC5 RecName: Full=30S ribosomal protein S3
 gi|158331061|dbj|BAF88546.1| ribosomal protein S3 [Azorhizobium caulinodans ORS 571]
          Length = 248

 Score =  291 bits (746), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 132/212 (62%), Positives = 173/212 (81%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N TW+SRWFA   +YG LLHED+KIR+ L   LKQA V+K++IER 
Sbjct: 1   MGQKVNPVGLRLGINRTWDSRWFANKGDYGTLLHEDIKIRQMLLKQLKQAAVSKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +YSARPG++IGKKG DI+K+RKK+++MT SE+ +++ E+ KPEI+A L+A+SI
Sbjct: 61  HKKCRVTIYSARPGVVIGKKGADIDKLRKKVADMTKSEVFINIVEIRKPEIDARLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARLEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            +DYGTA A T YG+CG+KV++  + E+ + D
Sbjct: 181 DVDYGTATAFTTYGTCGVKVWI-FKGEILEHD 211


>gi|298291444|ref|YP_003693383.1| ribosomal protein S3 [Starkeya novella DSM 506]
 gi|296927955|gb|ADH88764.1| ribosomal protein S3 [Starkeya novella DSM 506]
          Length = 235

 Score =  291 bits (745), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 135/212 (63%), Positives = 173/212 (81%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N TW+SRWFA   EYG LLHED+KIRE L   LKQA V+KI+IER 
Sbjct: 1   MGQKVNPVGLRLGINRTWDSRWFAGKGEYGQLLHEDIKIREMLLKLLKQAAVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG++IGKKG DI+K+RKK++ MTNSE+ +++ E+ KPEI+A L+A+SI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKKVAEMTNSEVFINIVEIRKPEIDARLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARLEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            +DYGTA A T YG+CG+KV++  + E+ + D
Sbjct: 181 DVDYGTATAFTTYGTCGVKVWI-FKGEILEHD 211


>gi|192292031|ref|YP_001992636.1| 30S ribosomal protein S3 [Rhodopseudomonas palustris TIE-1]
 gi|226697751|sp|B3QBX4|RS3_RHOPT RecName: Full=30S ribosomal protein S3
 gi|192285780|gb|ACF02161.1| ribosomal protein S3 [Rhodopseudomonas palustris TIE-1]
          Length = 235

 Score =  290 bits (743), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 137/227 (60%), Positives = 181/227 (79%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRWFA  +EYG LLHED+KIRE L   LKQA VA+I+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWFAGKNEYGKLLHEDVKIREILHKELKQAAVARIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG++IGKKG DI+K+RKK++++T+S++ +++ E+ KPE++ATL+A+SI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKKVADITSSDVVINIVEIRKPELDATLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYG A A T +G+CG+KV++  + E+ + D    A + R+ E D 
Sbjct: 181 DIDYGVATAFTTFGTCGVKVWI-FKGEILEHDPM--AQDKRMAESDG 224


>gi|182678343|ref|YP_001832489.1| ribosomal protein S3 [Beijerinckia indica subsp. indica ATCC 9039]
 gi|226697664|sp|B2IK68|RS3_BEII9 RecName: Full=30S ribosomal protein S3
 gi|182634226|gb|ACB95000.1| ribosomal protein S3 [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 241

 Score =  290 bits (742), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 138/221 (62%), Positives = 176/221 (79%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N TW+SRWFA   EY  LLHED++IRE L  +LKQA V+KI+IER 
Sbjct: 1   MGQKVNPIGLRLGINRTWDSRWFANKGEYSKLLHEDMRIREVLMKNLKQAAVSKIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG++IGKKG DI+KIRK +S +T+SE+ +++ EV KPEI+ATL+A SI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKIRKLVSKLTDSEVVINIVEVRKPEIDATLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSA+R GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAIRLGAEGIRINCSGRLGGAEIARLEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            +DYG A A TAYG+CGIKV++  + E+ + D   P A+ R
Sbjct: 181 DVDYGVATAHTAYGTCGIKVWI-FKGEILEHD---PMAQDR 217


>gi|118591178|ref|ZP_01548577.1| 30S ribosomal protein S3 [Stappia aggregata IAM 12614]
 gi|118436254|gb|EAV42896.1| 30S ribosomal protein S3 [Stappia aggregata IAM 12614]
          Length = 242

 Score =  290 bits (741), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 138/221 (62%), Positives = 173/221 (78%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K NPI  RLG+N TW+SRW+A  +EYG LLHED +IRE L   LKQA V+K++IER 
Sbjct: 1   MGHKTNPIGMRLGINRTWDSRWYANKNEYGDLLHEDFRIRELLLKELKQAAVSKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++S RPG++IGKKG DIE++RKK++++TNSE+HL++ EV KPEI+ATL+AQSI
Sbjct: 61  HKKCRVSIHSGRPGVVIGKKGADIERLRKKIADITNSEVHLNIVEVRKPEIDATLVAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA G+++   GRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAQGIRINCGGRLGGAEIARIEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDYG A A TAYG CG+KV++  + E+ + D   P A  R
Sbjct: 181 DIDYGVASAHTAYGVCGVKVWI-FKGEILEHD---PMASER 217


>gi|39936307|ref|NP_948583.1| 30S ribosomal protein S3 [Rhodopseudomonas palustris CGA009]
 gi|316933533|ref|YP_004108515.1| 30S ribosomal protein S3 [Rhodopseudomonas palustris DX-1]
 gi|61215590|sp|Q6N4U0|RS3_RHOPA RecName: Full=30S ribosomal protein S3; AltName: Full=RRP-S3
 gi|39650162|emb|CAE28685.1| 30S ribosomal protein S3 [Rhodopseudomonas palustris CGA009]
 gi|315601247|gb|ADU43782.1| ribosomal protein S3 [Rhodopseudomonas palustris DX-1]
          Length = 235

 Score =  290 bits (741), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 137/227 (60%), Positives = 181/227 (79%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRWFA  +EYG LLHED+KIRE L   LKQA VA+I+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWFAGKNEYGKLLHEDVKIREILHKELKQAAVARIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG++IGKKG DI+K+RKK++++T+S++ +++ E+ KPE++ATL+A+SI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKKVADITSSDVVINIVEIRKPELDATLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYG A A T +G+CG+KV++  + E+ + D    A + R+ E D 
Sbjct: 181 DIDYGVATAFTTFGTCGVKVWI-FKGEILEHDPM--AQDKRMAEGDG 224


>gi|86749421|ref|YP_485917.1| 30S ribosomal protein S3 [Rhodopseudomonas palustris HaA2]
 gi|123408226|sp|Q2IXQ4|RS3_RHOP2 RecName: Full=30S ribosomal protein S3
 gi|86572449|gb|ABD07006.1| SSU ribosomal protein S3P [Rhodopseudomonas palustris HaA2]
          Length = 232

 Score =  289 bits (740), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 137/227 (60%), Positives = 181/227 (79%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRWFA  +EYG LLHED+KIRE L   LKQA VA+I+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWFAGKNEYGKLLHEDVKIREILHKELKQAAVARIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG++IGKKG DI+K+RKK++++T S++ +++ E+ KPE++ATL+A+SI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKKVADITASDVVINIVEIRKPELDATLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYG A A T +G+CG+KV++  + E+ + D    A + R+ E D+
Sbjct: 181 DIDYGVATAFTTFGTCGVKVWI-FKGEILEHDPM--AQDKRMAEGDN 224


>gi|307946292|ref|ZP_07661627.1| ribosomal protein S3 [Roseibium sp. TrichSKD4]
 gi|307769956|gb|EFO29182.1| ribosomal protein S3 [Roseibium sp. TrichSKD4]
          Length = 242

 Score =  288 bits (737), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 135/224 (60%), Positives = 173/224 (77%), Gaps = 3/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RLG+N TW+SRWFA   EYG LLHED +IRE+L   LKQA V+KI+IER 
Sbjct: 1   MGHKVNPIGMRLGINRTWDSRWFAPKGEYGGLLHEDFRIREFLMNELKQAAVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK  R+ ++S RPG++IGKKG DIE++RKK++++T SE+H+++ EV KPE++ATL+A SI
Sbjct: 61  HKKARVTIHSGRPGVVIGKKGADIERLRKKIADITKSEVHINIVEVRKPEVDATLVAASI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKR+VQSAMR GA G+K+   GRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRSVQSAMRLGAQGIKITCGGRLGGAEIARIEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVE 224
            IDYG A A TAYG CG+KV++  + E+ + D    A+E R  +
Sbjct: 181 DIDYGVASAHTAYGVCGVKVWI-FKGEILEHDPM--ASERRATQ 221


>gi|85715125|ref|ZP_01046109.1| 30S ribosomal protein S3 [Nitrobacter sp. Nb-311A]
 gi|85698040|gb|EAQ35913.1| 30S ribosomal protein S3 [Nitrobacter sp. Nb-311A]
          Length = 231

 Score =  288 bits (737), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 136/227 (59%), Positives = 181/227 (79%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRW+A  SEYG LLHED+KIRE L   LKQA VA+I+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWYAGKSEYGRLLHEDVKIRELLHKELKQAAVARIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG++IGKKG DI+K+RK+++++T+S++ L++ E+ KPE++ATL+A+SI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKRVADITSSDVVLNIVEIRKPELDATLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            +DYG A A T +G+CG+KV++  + E+ + D    A + R+   DS
Sbjct: 181 DVDYGVATAFTTFGTCGVKVWI-FKGEILEHDPM--AQDKRLAGDDS 224


>gi|90424931|ref|YP_533301.1| 30S ribosomal protein S3 [Rhodopseudomonas palustris BisB18]
 gi|123275055|sp|Q211F4|RS3_RHOPB RecName: Full=30S ribosomal protein S3
 gi|90106945|gb|ABD88982.1| SSU ribosomal protein S3P [Rhodopseudomonas palustris BisB18]
          Length = 232

 Score =  288 bits (736), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 136/227 (59%), Positives = 181/227 (79%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRW+A  +EYG LLHED+KIRE L   LKQA VA+I+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWYAGKNEYGKLLHEDVKIREILHKELKQAAVARIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG++IGKKG DI+K+RKK++++T S++ +++ E+ KPE++ATL+A+SI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKKVADITASDVVINIVEIRKPELDATLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYG A A T +G+CG+KV++  + E+ + D    A + R+ E D+
Sbjct: 181 DIDYGVATAFTTFGTCGVKVWI-FKGEILEHDPM--AQDKRMAEGDN 224


>gi|27380505|ref|NP_772034.1| 30S ribosomal protein S3 [Bradyrhizobium japonicum USDA 110]
 gi|34098364|sp|Q89J90|RS3_BRAJA RecName: Full=30S ribosomal protein S3
 gi|27353669|dbj|BAC50659.1| 30S ribosomal protein S3 [Bradyrhizobium japonicum USDA 110]
          Length = 241

 Score =  287 bits (735), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 135/227 (59%), Positives = 181/227 (79%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRWFA   EYG LLHED+KIRE L   LKQA VA+I+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWFAGKQEYGKLLHEDVKIREILHKELKQAAVARIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG++IGKKG DI+K+RK+++++T+S++ +++ E+ KPE++ATL+A+SI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKRVADITSSDVVINIVEIRKPELDATLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYG A A T +G+CG+KV++  + E+ + D    A + R+ E ++
Sbjct: 181 DIDYGVATAFTTFGTCGVKVWI-FKGEILEHDPM--AQDKRMAEGET 224


>gi|91977646|ref|YP_570305.1| 30S ribosomal protein S3 [Rhodopseudomonas palustris BisB5]
 gi|115525579|ref|YP_782490.1| 30S ribosomal protein S3 [Rhodopseudomonas palustris BisA53]
 gi|122295414|sp|Q07KM4|RS3_RHOP5 RecName: Full=30S ribosomal protein S3
 gi|123735289|sp|Q134T5|RS3_RHOPS RecName: Full=30S ribosomal protein S3
 gi|91684102|gb|ABE40404.1| SSU ribosomal protein S3P [Rhodopseudomonas palustris BisB5]
 gi|115519526|gb|ABJ07510.1| SSU ribosomal protein S3P [Rhodopseudomonas palustris BisA53]
          Length = 232

 Score =  287 bits (734), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 136/227 (59%), Positives = 180/227 (79%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRWFA  +EYG LLHED+KIR  L   LKQA VA+I+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWFAGKNEYGKLLHEDVKIRAILHKELKQAAVARIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG++IGKKG DI+K+RKK++++T S++ +++ E+ KPE++ATL+A+SI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKKVADITASDVVINIVEIRKPELDATLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYG A A T +G+CG+KV++  + E+ + D    A + R+ E D+
Sbjct: 181 DIDYGVATAFTTFGTCGVKVWI-FKGEILEHDPM--AQDKRMAEGDN 224


>gi|146340063|ref|YP_001205111.1| 30S ribosomal protein S3 [Bradyrhizobium sp. ORS278]
 gi|152060849|sp|A4YSJ8|RS3_BRASO RecName: Full=30S ribosomal protein S3
 gi|146192869|emb|CAL76874.1| 30S ribosomal subunit protein S3 [Bradyrhizobium sp. ORS278]
          Length = 236

 Score =  287 bits (734), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 132/212 (62%), Positives = 175/212 (82%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRWFA  +EYG LLHED+KIRE L   LKQA VA+I+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWFAGKAEYGKLLHEDVKIREILHKELKQAAVARIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG++IGKKG DI+K+RK+++++T+S++ +++ E+ KPE++ATL+A+SI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKRVADITSSDVVINIVEIRKPELDATLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYG A A T +G+CG+KV++  + E+ + D
Sbjct: 181 DIDYGVATAFTTFGTCGVKVWI-FKGEILEHD 211


>gi|148256386|ref|YP_001240971.1| 30S ribosomal protein S3 [Bradyrhizobium sp. BTAi1]
 gi|189044953|sp|A5ELM1|RS3_BRASB RecName: Full=30S ribosomal protein S3
 gi|146408559|gb|ABQ37065.1| SSU ribosomal protein S3P [Bradyrhizobium sp. BTAi1]
          Length = 236

 Score =  287 bits (734), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 132/212 (62%), Positives = 175/212 (82%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRWFA  +EYG LLHED+KIRE L   LKQA VA+I+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWFAGKAEYGKLLHEDVKIREILHKELKQAAVARIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG++IGKKG DI+K+RK+++++T+S++ +++ E+ KPE++ATL+A+SI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKRVADITSSDVVINIVEIRKPELDATLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYG A A T +G+CG+KV++  + E+ + D
Sbjct: 181 DIDYGVATAFTTFGTCGVKVWI-FKGEILEHD 211


>gi|75675562|ref|YP_317983.1| 30S ribosomal protein S3 [Nitrobacter winogradskyi Nb-255]
 gi|91207824|sp|Q3SSW0|RS3_NITWN RecName: Full=30S ribosomal protein S3
 gi|74420432|gb|ABA04631.1| SSU ribosomal protein S3P [Nitrobacter winogradskyi Nb-255]
          Length = 231

 Score =  286 bits (731), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 131/212 (61%), Positives = 175/212 (82%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRW+A  +EYG LLHED+KIRE L   LKQA VA+I+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWYAGKAEYGRLLHEDVKIRELLHKELKQAAVARIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG++IGKKG DI+K+RK+++++T+S++ L++ E+ KPE++ATL+A+SI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKRVADITSSDVVLNIVEIRKPELDATLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            +DYG A A T +G+CG+KV++  + E+ + D
Sbjct: 181 DVDYGVATAFTTFGTCGVKVWI-FKGEILEHD 211


>gi|312115693|ref|YP_004013289.1| ribosomal protein S3 [Rhodomicrobium vannielii ATCC 17100]
 gi|311220822|gb|ADP72190.1| ribosomal protein S3 [Rhodomicrobium vannielii ATCC 17100]
          Length = 254

 Score =  286 bits (731), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 132/221 (59%), Positives = 174/221 (78%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N TW+SRW+A   EYG LLHED +IRE++    +QAG++K++IER 
Sbjct: 1   MGQKVNPIGLRLGINRTWDSRWYADKGEYGRLLHEDFRIREFIMKQRRQAGISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           H+ CR+ V++ARPG++IGKKG DIEK+R +L+  T SE++L++ EV KPE++ATL A+ I
Sbjct: 61  HRKCRVTVHTARPGILIGKKGADIEKLRGQLAKFTTSEVYLNIVEVRKPELDATLAAEGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRA QSA+R GA GV++  +GRL GAE++R E YL+GRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRATQSALRLGAQGVRIYVAGRLGGAEIARMEWYLDGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDYGTAVAETAYG  G+KV++  + E+ + D   P A+ R
Sbjct: 181 DIDYGTAVAETAYGVIGVKVWI-FKGEILEHD---PMAQER 217


>gi|304321446|ref|YP_003855089.1| 30S ribosomal protein S3 [Parvularcula bermudensis HTCC2503]
 gi|303300348|gb|ADM09947.1| 30S ribosomal protein S3 [Parvularcula bermudensis HTCC2503]
          Length = 241

 Score =  283 bits (725), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 135/227 (59%), Positives = 176/227 (77%), Gaps = 3/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLG+N TW+SRWFA    YG LLHEDL+IR +LQ  LK AGV++I+IER 
Sbjct: 1   MGQKVSPIGLRLGINRTWDSRWFASKGNYGDLLHEDLRIRNFLQKRLKNAGVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +Y+ARPG++IGKKG DIEK+R++L  M++SE  L++ E+ KPE++ATL+A++I
Sbjct: 61  HKKCRVTIYTARPGVVIGKKGADIEKLRQELQKMSSSETVLNIVEIRKPEVDATLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR  FRRAMKRA+Q+AMR GA G++V  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRASFRRAMKRAMQTAMRMGALGIRVNCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYG A A T YG+ GIKV++  + E+ D D    A+E R+VE  +
Sbjct: 181 DIDYGIATARTTYGAIGIKVWI-FKGEILDHDPM--ASERRLVESQT 224


>gi|163851591|ref|YP_001639634.1| ribosomal protein S3 [Methylobacterium extorquens PA1]
 gi|218530400|ref|YP_002421216.1| ribosomal protein S3 [Methylobacterium chloromethanicum CM4]
 gi|240138759|ref|YP_002963231.1| 30S ribosomal subunit protein S3 [Methylobacterium extorquens AM1]
 gi|254561359|ref|YP_003068454.1| 30S ribosomal subunit protein S3 [Methylobacterium extorquens DM4]
 gi|163663196|gb|ABY30563.1| ribosomal protein S3 [Methylobacterium extorquens PA1]
 gi|218522703|gb|ACK83288.1| ribosomal protein S3 [Methylobacterium chloromethanicum CM4]
 gi|240008728|gb|ACS39954.1| 30S ribosomal subunit protein S3 [Methylobacterium extorquens AM1]
 gi|254268637|emb|CAX24596.1| 30S ribosomal subunit protein S3 [Methylobacterium extorquens DM4]
          Length = 248

 Score =  283 bits (724), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 132/212 (62%), Positives = 168/212 (79%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRWFA   EY  L+HED+ IR  L   LKQA V+KI+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWFAEKGEYAKLMHEDVAIRAALMKQLKQAAVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           H+ CR+ ++S RPG++IGKKG DIEK+RK +  MT +++ +++ EV KPEI+ATL+A+SI
Sbjct: 61  HRKCRVTIHSGRPGVVIGKKGADIEKLRKLVGTMTKADVTINIVEVRKPEIDATLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            +DYGTA A T YG+CGIKV+V  + E+ + D
Sbjct: 181 DVDYGTATAFTTYGTCGIKVWV-FKGEILEHD 211


>gi|92117104|ref|YP_576833.1| 30S ribosomal protein S3 [Nitrobacter hamburgensis X14]
 gi|122990230|sp|Q1QN24|RS3_NITHX RecName: Full=30S ribosomal protein S3
 gi|91799998|gb|ABE62373.1| SSU ribosomal protein S3P [Nitrobacter hamburgensis X14]
          Length = 231

 Score =  283 bits (724), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 132/227 (58%), Positives = 181/227 (79%), Gaps = 4/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRW+A  +EYG LLHED++IRE L   LKQA VA+I+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWYAGKNEYGRLLHEDVRIRELLHKELKQAAVARIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG++IGKKG DI+K+RK+++++T+S++ +++ E+ KPE++ATL+A+SI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKLRKRVADITSSDVVINIVEIRKPELDATLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            +DYG A A T +G+CG+KV++  + E+ + D   P A+ + +  D 
Sbjct: 181 DVDYGVATAFTTFGTCGVKVWI-FKGEILEHD---PMAQDKRLAGDD 223


>gi|188581381|ref|YP_001924826.1| ribosomal protein S3 [Methylobacterium populi BJ001]
 gi|179344879|gb|ACB80291.1| ribosomal protein S3 [Methylobacterium populi BJ001]
          Length = 248

 Score =  283 bits (723), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 131/212 (61%), Positives = 168/212 (79%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRWFA   EY  L+HED+ IR  L   LKQA V+KI+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWFAEKGEYAKLMHEDVAIRAALMKQLKQAAVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           H+ CR+ ++S RPG++IGKKG DIEK+RK +  MT +++ +++ EV KPE++ATL+A+SI
Sbjct: 61  HRKCRVTIHSGRPGVVIGKKGADIEKLRKLVGTMTKADVTINIVEVRKPEVDATLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            +DYGTA A T YG+CGIKV+V  + E+ + D
Sbjct: 181 DVDYGTATAFTTYGTCGIKVWV-FKGEILEHD 211


>gi|197104702|ref|YP_002130079.1| 30S ribosomal protein S3 [Phenylobacterium zucineum HLK1]
 gi|226697742|sp|B4R8M3|RS3_PHEZH RecName: Full=30S ribosomal protein S3
 gi|196478122|gb|ACG77650.1| 30S ribosomal protein S3 [Phenylobacterium zucineum HLK1]
          Length = 253

 Score =  283 bits (723), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 133/212 (62%), Positives = 168/212 (79%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP+  RLG+N TW+SRWFA G EYG LLHED+K+R  L+  L QAGV++I+IER 
Sbjct: 1   MGQKINPVGLRLGINRTWDSRWFADGPEYGRLLHEDIKVRRALKKRLYQAGVSRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CRI +Y+ARPG+IIGKKG DIEK+RK ++ MT+ E+HL++ E+ KPE +A LIA++I
Sbjct: 61  HKKCRITIYAARPGVIIGKKGADIEKLRKDVAAMTDGEVHLNIVEIRKPETDAQLIAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKR++QSAMR GA GV++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRSMQSAMRLGAKGVRINVSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            +DYG   A+T YG  G+KV+V  + EV + D
Sbjct: 181 DVDYGFTEAKTTYGVIGVKVWV-FKGEVLEHD 211


>gi|299135251|ref|ZP_07028442.1| ribosomal protein S3 [Afipia sp. 1NLS2]
 gi|298590228|gb|EFI50432.1| ribosomal protein S3 [Afipia sp. 1NLS2]
          Length = 234

 Score =  283 bits (723), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 134/221 (60%), Positives = 174/221 (78%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRWFA   EY  LLHED++IRE L   LKQA VA+I+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWFAGKGEYAKLLHEDVRIREVLMKELKQAAVARIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ VYSARPG++IGKKG DI+K++KK++ +T S++ +++ E+ KPE++ATL+A+SI
Sbjct: 61  HKKCRVSVYSARPGVVIGKKGADIDKLKKKVAEITQSDVVINIVEIRKPELDATLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAQGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDYG A A T +G+CG+KV++  + E+ + D   P A+ +
Sbjct: 181 DIDYGVATAFTTFGTCGVKVWL-FKGEILEHD---PMAQDK 217


>gi|296447536|ref|ZP_06889458.1| ribosomal protein S3 [Methylosinus trichosporium OB3b]
 gi|296254924|gb|EFH02029.1| ribosomal protein S3 [Methylosinus trichosporium OB3b]
          Length = 247

 Score =  281 bits (720), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 133/212 (62%), Positives = 166/212 (78%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLGVN TW+SRWFA   EY  LLHEDL IR  +  HLKQA V++I+IER 
Sbjct: 1   MGQKVNPIGLRLGVNRTWDSRWFASKGEYAKLLHEDLAIRAAVAKHLKQAAVSRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG++IGKKG DI+KIRK +  +T SE+ +++ EV KPE+ ATL+A SI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKIRKLVGRLTGSEVVINIVEVRKPEVEATLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSA+R GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAIRLGAQGIRINCSGRLGGAEIARLEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            +DYG A A TAYG+CGIKV++  + E+ + D
Sbjct: 181 DVDYGVATAHTAYGACGIKVWI-FKGEILEHD 211


>gi|114771263|ref|ZP_01448683.1| 30S ribosomal protein S3 [alpha proteobacterium HTCC2255]
 gi|114548188|gb|EAU51075.1| 30S ribosomal protein S3 [alpha proteobacterium HTCC2255]
          Length = 239

 Score =  281 bits (718), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 136/225 (60%), Positives = 177/225 (78%), Gaps = 4/225 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI FRL VN TW+SRW+A G +YG+LL ED+KIRE+++    QAGVA++++ER 
Sbjct: 1   MGQKINPIGFRLQVNRTWDSRWYAEGDKYGSLLLEDIKIREFVKKECVQAGVARVIVERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG+IIGKKG DIE +RKKL+  T+SE+HL++ EV KPE++A L+A+S+
Sbjct: 61  HKKCRVTIHSARPGVIIGKKGADIETLRKKLAAFTDSELHLNIVEVRKPEMDAQLVAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+AMR GA G+++  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAMRMGALGIRINVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDY  A   TAYG  GIKV++  + E+ + D   PAA  R +E+
Sbjct: 181 DIDYARAEGMTAYGIIGIKVWI-FKGEIMEHD---PAARDRRIEE 221


>gi|209884819|ref|YP_002288676.1| ribosomal protein S3 [Oligotropha carboxidovorans OM5]
 gi|226697738|sp|B6JET9|RS3_OLICO RecName: Full=30S ribosomal protein S3
 gi|209873015|gb|ACI92811.1| ribosomal protein S3 [Oligotropha carboxidovorans OM5]
          Length = 233

 Score =  280 bits (716), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 132/221 (59%), Positives = 174/221 (78%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRWFA   +Y  LLHED++IRE L   LKQA VA+I+IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWFAGKGDYAKLLHEDVRIREVLMKELKQAAVARIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ VYSARPG++IGKKG DI+K++KK++ +T S++ +++ E+ KPE++ATL+A+SI
Sbjct: 61  HKKCRVSVYSARPGVVIGKKGADIDKLKKKVAEITESDVVINIVEIRKPELDATLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAQGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            +DYG A A T +G+CG+KV++  + E+ + D   P A+ +
Sbjct: 181 DVDYGVATAFTTFGTCGVKVWL-FKGEILEHD---PMAQDK 217


>gi|170748642|ref|YP_001754902.1| ribosomal protein S3 [Methylobacterium radiotolerans JCM 2831]
 gi|170655164|gb|ACB24219.1| ribosomal protein S3 [Methylobacterium radiotolerans JCM 2831]
          Length = 248

 Score =  280 bits (715), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 130/212 (61%), Positives = 166/212 (78%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N TW+SRWFA   +Y  L+HED+ IR  L   LKQA V+KI+IER 
Sbjct: 1   MGQKVNPIGLRLGINRTWDSRWFANKGDYAKLMHEDVAIRAALMKQLKQAAVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           H+ CR+ ++S RPG++IGKKG DIEK+RK +  MT +++ +++ EV KPEI+ATL+A SI
Sbjct: 61  HRKCRVTIHSGRPGVVIGKKGADIEKLRKLVGTMTKADVTINIVEVRKPEIDATLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARQEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            +DYGTA A T YG+CGIKV+V  + E+ + D
Sbjct: 181 DVDYGTATAFTTYGTCGIKVWV-FKGEILEHD 211


>gi|170738697|ref|YP_001767352.1| ribosomal protein S3 [Methylobacterium sp. 4-46]
 gi|168192971|gb|ACA14918.1| ribosomal protein S3 [Methylobacterium sp. 4-46]
          Length = 252

 Score =  280 bits (715), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 132/226 (58%), Positives = 174/226 (76%), Gaps = 4/226 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N TW+SRW+A   EY  L+HED+ IR+ L   LKQA V+KI+IER 
Sbjct: 1   MGQKVNPIGLRLGINRTWDSRWYANKGEYARLMHEDVAIRQALMKQLKQAAVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           H+ CR+ ++S RPG++IGKKG DIEK+RK +  MT +++ +++ EV KPEI+ATL+A SI
Sbjct: 61  HRKCRVTIHSGRPGVVIGKKGADIEKLRKLVGTMTKADVTINIIEVRKPEIDATLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARLEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKD 226
            +DYGTA A T YG+CGIKV+V  + E+ + D   P A+ +  +++
Sbjct: 181 DVDYGTATAFTTYGTCGIKVWV-FKGEILEHD---PMAQDKRAQEE 222


>gi|323136092|ref|ZP_08071175.1| ribosomal protein S3 [Methylocystis sp. ATCC 49242]
 gi|322399183|gb|EFY01702.1| ribosomal protein S3 [Methylocystis sp. ATCC 49242]
          Length = 251

 Score =  280 bits (715), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 133/212 (62%), Positives = 165/212 (77%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLGVN TW+SRWFA   EY  LLHED+ IRE +   LKQA V+KI+IER 
Sbjct: 1   MGQKVNPIGLRLGVNRTWDSRWFASKGEYAKLLHEDMAIREAVMKLLKQAAVSKIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG++IGKKG DI+KIRK +  +T SE+ +++ EV KPE  A L+A SI
Sbjct: 61  HKKCRVTIHSARPGVVIGKKGADIDKIRKLVGKLTGSEVVINIVEVRKPETEAALVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSA+R GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAIRLGAQGIRINCSGRLGGAEIARLEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            +DYGTA A TAYG+CGIKV++  + E+ + D
Sbjct: 181 DVDYGTATAHTAYGACGIKVWI-FKGEILEHD 211


>gi|220921905|ref|YP_002497206.1| ribosomal protein S3 [Methylobacterium nodulans ORS 2060]
 gi|219946511|gb|ACL56903.1| ribosomal protein S3 [Methylobacterium nodulans ORS 2060]
          Length = 251

 Score =  279 bits (714), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 130/212 (61%), Positives = 167/212 (78%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N TW+SRW+A   EY  L+HED+ IR+ L   LKQA V+KI+IER 
Sbjct: 1   MGQKVNPIGLRLGINRTWDSRWYANKGEYARLMHEDVAIRQALMKQLKQAAVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           H+ CR+ ++S RPG++IGKKG DIEK+RK +  MT +++ +++ EV KPEI+ATL+A SI
Sbjct: 61  HRKCRVTIHSGRPGVVIGKKGADIEKLRKLVGTMTKADVTINIVEVRKPEIDATLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA+G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCSGRLGGAEIARLEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            +DYGTA A T YG+CGIKV+V  + E+ + D
Sbjct: 181 DVDYGTATAFTTYGTCGIKVWV-FKGEILEHD 211


>gi|304391459|ref|ZP_07373401.1| ribosomal protein S3 [Ahrensia sp. R2A130]
 gi|303295688|gb|EFL90046.1| ribosomal protein S3 [Ahrensia sp. R2A130]
          Length = 236

 Score =  279 bits (713), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 129/221 (58%), Positives = 173/221 (78%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI FRLG+N TW+SRWFA   +Y ++L ED+ IR Y++  LK A ++K++IER 
Sbjct: 1   MGQKINPIGFRLGINRTWDSRWFATKGDYASMLDEDINIRNYIEKELKAASISKVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ RPGLIIGKKG DIEK+++K+  MT++E+ +++ E+ KPE++AT++AQSI
Sbjct: 61  HKKCRVTIHAGRPGLIIGKKGADIEKLKRKVQTMTSAEVSVNIVEIRKPELDATIVAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKR+VQSA+R GA G+++   GRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRSVQSAIRLGAQGIRINCGGRLGGAEIARVEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDYGTA AETAYG CG+KV++  + E+ + D   P A  R
Sbjct: 181 DIDYGTAEAETAYGICGVKVWI-FKGEILEHD---PMAHER 217


>gi|254502211|ref|ZP_05114362.1| ribosomal protein S3 [Labrenzia alexandrii DFL-11]
 gi|222438282|gb|EEE44961.1| ribosomal protein S3 [Labrenzia alexandrii DFL-11]
          Length = 233

 Score =  278 bits (712), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 132/212 (62%), Positives = 166/212 (78%), Gaps = 4/212 (1%)

Query: 10  FRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTHKNCRIIVY 69
            RLG+N TW+SRW+A  +EYG LLHED +IREYL   LKQA V+K++IER HK CR+ ++
Sbjct: 1   MRLGINRTWDSRWYANKNEYGDLLHEDFRIREYLMKELKQAAVSKVVIERPHKKCRVSIH 60

Query: 70  SARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSIAQQLERRVV 129
           S RPG++IGKKG DIE++RKK++ +TNSE+HL++ EV KPEI+ATL+A SIAQQLERRV 
Sbjct: 61  SGRPGVVIGKKGADIERLRKKIAEITNSEVHLNIVEVRKPEIDATLVAASIAQQLERRVA 120

Query: 130 FRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRAHIDYGTAVA 189
           FRRAMKRAVQSAMR GA G+++   GRL GAE++R E Y EGRVPL TLRA IDYG A A
Sbjct: 121 FRRAMKRAVQSAMRLGAQGIRINCGGRLGGAEIARIEWYREGRVPLHTLRADIDYGVASA 180

Query: 190 ETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            TAYG CG+KV++  + E+ + D   P A  R
Sbjct: 181 HTAYGVCGVKVWI-FKGEILEHD---PMASER 208


>gi|254421013|ref|ZP_05034737.1| ribosomal protein S3 [Brevundimonas sp. BAL3]
 gi|196187190|gb|EDX82166.1| ribosomal protein S3 [Brevundimonas sp. BAL3]
          Length = 251

 Score =  278 bits (711), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 133/212 (62%), Positives = 167/212 (78%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLGVN TW+SRWFA G++Y  LLH+DLK+RE+L+  L  AGV++I+IER 
Sbjct: 1   MGQKINPIGLRLGVNRTWDSRWFAAGADYSRLLHQDLKLREWLRERLAAAGVSRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CRI +Y+ARPG++IGKKG DIEK+RK +S  T  E+HL++ EV KPE +A LIA++I
Sbjct: 61  HKKCRITIYAARPGVVIGKKGADIEKLRKDISAQTEGEVHLNIIEVRKPETDAQLIAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKR++QSAMR GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRSMQSAMRLGAKGIRMNVSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYG   A+T YG  G+KV+V  + EV + D
Sbjct: 181 DIDYGFYEAKTTYGIIGVKVWV-FKGEVLEHD 211


>gi|144900890|emb|CAM77754.1| 30S ribosomal protein S3 [Magnetospirillum gryphiswaldense MSR-1]
          Length = 228

 Score =  278 bits (711), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 129/202 (63%), Positives = 163/202 (80%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N TW+SRWFA G +Y  +LHEDLK+R+YL+  L QAGV++++IER 
Sbjct: 1   MGQKVNPIGLRLGINRTWDSRWFADG-DYAKMLHEDLKLRDYLRKKLAQAGVSRVIIERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  RI +++ARPG++IGKKG DIE +RK LS MT  E+HL++ E+ KPE++A L+A+SI
Sbjct: 60  AKKARITIHTARPGVVIGKKGADIEVLRKTLSKMTGGEVHLNIVEIRKPELDAQLVAESI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 120 AQQLERRVSFRRAMKRAVQSAMRLGAQGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG   A+T YG+CGIKV+V
Sbjct: 180 DIDYGIGTAKTTYGTCGIKVWV 201


>gi|83594014|ref|YP_427766.1| 30S ribosomal protein S3 [Rhodospirillum rubrum ATCC 11170]
 gi|91207836|sp|Q2RQW6|RS3_RHORT RecName: Full=30S ribosomal protein S3
 gi|83576928|gb|ABC23479.1| SSU ribosomal protein S3P [Rhodospirillum rubrum ATCC 11170]
          Length = 223

 Score =  277 bits (709), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 130/212 (61%), Positives = 169/212 (79%), Gaps = 2/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N TW+SRWFA G +Y +LLH+DL I++YL+  L QAGV++I+IER 
Sbjct: 1   MGQKVNPIGLRLGINRTWDSRWFA-GRDYASLLHQDLAIKKYLKSKLAQAGVSRIVIERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  RI +++ARPG++IGKKG DIE +RKKL  MT +E+HL++ E+ KPE++A L+A++I
Sbjct: 60  AKKARITIHTARPGVVIGKKGQDIENLRKKLQVMTGNEVHLNIVEIRKPELDAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA G+++   GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 120 AQQLERRVAFRRAMKRAVQSAMRLGALGIRINCGGRLGGAEIARTEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            +DYGTA A T YG CG+KV+V  + E+ + D
Sbjct: 180 DVDYGTAAAHTTYGVCGVKVWV-FKGEIMEHD 210


>gi|119383517|ref|YP_914573.1| 30S ribosomal protein S3 [Paracoccus denitrificans PD1222]
 gi|152060888|sp|A1B033|RS3_PARDP RecName: Full=30S ribosomal protein S3
 gi|119373284|gb|ABL68877.1| SSU ribosomal protein S3P [Paracoccus denitrificans PD1222]
          Length = 240

 Score =  277 bits (708), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 134/221 (60%), Positives = 171/221 (77%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RL VN TW+SRW+A   +YG LL EDLKIR++++   KQAGV++++IER 
Sbjct: 1   MGQKVNPIGMRLQVNRTWDSRWYADDKDYGNLLLEDLKIRDFIKKEAKQAGVSRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +Y+ARPG+IIGKKG DIE +RKKL+N T SE+HL++ EV KPE++A L+A+SI
Sbjct: 61  HKKCRVTIYAARPGVIIGKKGADIETLRKKLANFTGSELHLNIVEVRKPELDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+AMR GA G++V  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY  + A T YG  G+KV++  + E+ + D   P A  R
Sbjct: 181 DIDYALSEASTPYGIIGVKVWI-FKGEIMEHD---PQARDR 217


>gi|167645584|ref|YP_001683247.1| 30S ribosomal protein S3 [Caulobacter sp. K31]
 gi|189044963|sp|B0T2C8|RS3_CAUSK RecName: Full=30S ribosomal protein S3
 gi|167348014|gb|ABZ70749.1| ribosomal protein S3 [Caulobacter sp. K31]
          Length = 249

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 127/212 (59%), Positives = 166/212 (78%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N TW+SRWFA G +YG LLH+DL +R  L+  L QAGV++I+IER 
Sbjct: 1   MGQKVNPVGLRLGINRTWDSRWFADGEQYGKLLHQDLAVRAMLKKRLYQAGVSRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +Y+ARPG+IIGKKG DI+K+RK LS MT  E+HL++ E+ KPE +A L+A+SI
Sbjct: 61  HKKCRVTIYAARPGVIIGKKGADIDKLRKDLSVMTEGEVHLNIVEIRKPETDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR+ FRRAMKR++QSA+R GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIAFRRAMKRSIQSAVRLGAKGIRINVSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYG A A+T YG  G+K ++  + EV + D
Sbjct: 181 DIDYGFAEAKTTYGIIGVKTWI-FKGEVLEHD 211


>gi|83858560|ref|ZP_00952082.1| 30S ribosomal protein S3 [Oceanicaulis alexandrii HTCC2633]
 gi|83853383|gb|EAP91235.1| 30S ribosomal protein S3 [Oceanicaulis alexandrii HTCC2633]
          Length = 234

 Score =  276 bits (707), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 132/221 (59%), Positives = 171/221 (77%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  R+G+N TW SRWFA+G EY  LLHEDL+IREYL+  LK A V++I+IER 
Sbjct: 1   MGQKVNPIGLRVGINRTWESRWFAKGEEYADLLHEDLRIREYLKKELKNASVSRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CRI +++ARPG++IGKKG DIEK+R+K+S M   E+ L++ EV KPE++ATL+A+S+
Sbjct: 61  HKKCRITIHTARPGVVIGKKGADIEKLRRKVSKMVEGEVFLNLVEVRKPEVDATLVAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKR++Q+AMR GA G K++  GRL GAE++R E Y EG VPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRSLQTAMRMGALGCKIMCGGRLGGAEIARVEKYSEGSVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDYG A A+TA G  GIKV++  + E+ + D   P A+ R
Sbjct: 181 DIDYGFAEAKTAMGIIGIKVWI-YKGEIMEHD---PMAQER 217


>gi|329889135|ref|ZP_08267478.1| ribosomal protein S3 [Brevundimonas diminuta ATCC 11568]
 gi|328844436|gb|EGF94000.1| ribosomal protein S3 [Brevundimonas diminuta ATCC 11568]
          Length = 248

 Score =  276 bits (706), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 131/212 (61%), Positives = 166/212 (78%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLGVN TW+SRWFA G++Y  LLH+DLK+R +L+  L  AGV++I+IER 
Sbjct: 1   MGQKINPIGLRLGVNRTWDSRWFAGGADYAKLLHQDLKLRTWLKERLSAAGVSRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +Y+ARPG++IGKKG DIEK+RK +S  T  E+HL++ EV KPE +A LIA++I
Sbjct: 61  HKKCRVTIYAARPGVVIGKKGADIEKLRKDISARTEGEVHLNIVEVRKPETDAQLIAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR+ FRRAMKR++QSAMR GA GV++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIAFRRAMKRSMQSAMRLGAKGVRINVSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYG   A+T YG  G+KV+V  + EV + D
Sbjct: 181 DIDYGFYEAKTTYGIIGVKVWV-FKGEVLEHD 211


>gi|163796913|ref|ZP_02190870.1| 30S ribosomal protein S3 [alpha proteobacterium BAL199]
 gi|159177902|gb|EDP62451.1| 30S ribosomal protein S3 [alpha proteobacterium BAL199]
          Length = 227

 Score =  276 bits (705), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 134/225 (59%), Positives = 173/225 (76%), Gaps = 4/225 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RLG+N TW+SRWFA    Y ALLHEDL +R++LQ  L+QAGV++I+IER 
Sbjct: 1   MGHKVNPIGLRLGINRTWDSRWFA-SKGYAALLHEDLVLRKFLQKRLRQAGVSRIVIERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  RI +Y+ARPG+IIGKKG DIEK+R++LS MT +++ L++ E+ KPEI+A L+A++I
Sbjct: 60  AKRARITIYTARPGVIIGKKGADIEKLRQELSQMTRTDVALNIVEIRKPEIDAKLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA G+++   GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 120 AQQLERRVAFRRAMKRAVQSAMRLGAQGIRITCGGRLGGAEIARTEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDYG A A T YG+CG+KV+V  + E+   D    A + R+ E+
Sbjct: 180 DIDYGDATAFTTYGTCGVKVWV-FKGEIMAHDPM--AQDKRLAEQ 221


>gi|114570339|ref|YP_757019.1| 30S ribosomal protein S3P [Maricaulis maris MCS10]
 gi|122315789|sp|Q0ANQ6|RS3_MARMM RecName: Full=30S ribosomal protein S3
 gi|114340801|gb|ABI66081.1| SSU ribosomal protein S3P [Maricaulis maris MCS10]
          Length = 234

 Score =  276 bits (705), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 135/225 (60%), Positives = 173/225 (76%), Gaps = 4/225 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLGVN TW SRW+A   EY  LLHED+KIR+ L+  LK A V+KI+IER 
Sbjct: 1   MGQKVNPIGLRLGVNRTWESRWYAGAGEYAKLLHEDIKIRKMLKERLKNASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ V++ARPG++IGKKG+DIE +RK+LS M + E+HL++ EV KPEI+A L+A+SI
Sbjct: 61  HKKCRVTVHTARPGVVIGKKGSDIETLRKELSKMIDGEVHLNLVEVRKPEIDAALVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKR++QSAMR GA G K++  GRL GAE++RTE Y EG VPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRSMQSAMRMGAKGCKIVCGGRLGGAEIARTEQYNEGSVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDYGT  A+TA G  GIKV++  + E+ + D   P A+ R +++
Sbjct: 181 DIDYGTCEAKTAMGIIGIKVWI-YKGEIMEHD---PNAQERRLQE 221


>gi|16125503|ref|NP_420067.1| 30S ribosomal protein S3 [Caulobacter crescentus CB15]
 gi|221234249|ref|YP_002516685.1| 30S ribosomal protein S3 [Caulobacter crescentus NA1000]
 gi|27734530|sp|Q9A8U7|RS3_CAUCR RecName: Full=30S ribosomal protein S3
 gi|254764520|sp|B8H4E0|RS3_CAUCN RecName: Full=30S ribosomal protein S3
 gi|13422585|gb|AAK23235.1| ribosomal protein S3 [Caulobacter crescentus CB15]
 gi|220963421|gb|ACL94777.1| SSU ribosomal protein S3P [Caulobacter crescentus NA1000]
          Length = 250

 Score =  275 bits (703), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 126/212 (59%), Positives = 167/212 (78%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N TW+SRWFA G++YG LLH+DL +R  L+  L QAGV++I+IER 
Sbjct: 1   MGQKVNPVGLRLGINRTWDSRWFADGNQYGKLLHQDLAVRAALKKRLYQAGVSRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +Y+ARPG+IIGKKG DI+K+RK LS MT  E+HL++ E+ KPE +A L+A+SI
Sbjct: 61  HKKCRVTIYAARPGVIIGKKGADIDKLRKDLSIMTEGEVHLNIVEIRKPETDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR+ FRRAMKR++QSA+R GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIAFRRAMKRSIQSAVRLGAKGIRINVSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            ID+G A A+T YG  G+K ++  + EV + D
Sbjct: 181 DIDFGFAEAKTTYGIIGVKTWI-FKGEVLEHD 211


>gi|302382624|ref|YP_003818447.1| ribosomal protein S3 [Brevundimonas subvibrioides ATCC 15264]
 gi|302193252|gb|ADL00824.1| ribosomal protein S3 [Brevundimonas subvibrioides ATCC 15264]
          Length = 250

 Score =  275 bits (703), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 131/212 (61%), Positives = 164/212 (77%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI FRLGVN TW+SRWFA G  Y  LLH+DL +R +L+  L  AGV++I+IER 
Sbjct: 1   MGQKINPIGFRLGVNRTWDSRWFADGPSYARLLHQDLALRTWLKERLNAAGVSRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +Y+ARPG++IGKKG DIEK+RK +S  T  E+HL++ EV KPE +A LIA++I
Sbjct: 61  HKKCRVTIYAARPGVVIGKKGADIEKLRKDISARTEGEVHLNIVEVRKPETDAQLIAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR+ FRRAMKR++QSAMR GA GV++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIAFRRAMKRSMQSAMRLGAKGVRINVSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYG   A+T YG  G+KV+V  + EV + D
Sbjct: 181 DIDYGFIEAKTTYGIIGVKVWV-FKGEVLEHD 211


>gi|77462265|ref|YP_351769.1| 30S ribosomal protein S3 [Rhodobacter sphaeroides 2.4.1]
 gi|126461141|ref|YP_001042255.1| 30S ribosomal protein S3 [Rhodobacter sphaeroides ATCC 17029]
 gi|221638119|ref|YP_002524381.1| 30S ribosomal protein S3 [Rhodobacter sphaeroides KD131]
 gi|91207837|sp|Q3J5R6|RS3_RHOS4 RecName: Full=30S ribosomal protein S3
 gi|152060900|sp|A3PGL7|RS3_RHOS1 RecName: Full=30S ribosomal protein S3
 gi|254764543|sp|B9KL97|RS3_RHOSK RecName: Full=30S ribosomal protein S3
 gi|77386683|gb|ABA77868.1| SSU ribosomal protein S3P [Rhodobacter sphaeroides 2.4.1]
 gi|126102805|gb|ABN75483.1| SSU ribosomal protein S3P [Rhodobacter sphaeroides ATCC 17029]
 gi|221158900|gb|ACL99879.1| 30S ribosomal protein S3 [Rhodobacter sphaeroides KD131]
          Length = 238

 Score =  275 bits (703), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 132/221 (59%), Positives = 170/221 (76%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RL VN TW+SRWFA   +YG LL EDLK+RE++  + KQAGV+K++IER 
Sbjct: 1   MGQKVNPIGMRLQVNRTWDSRWFAESKDYGNLLLEDLKMREFIHDYAKQAGVSKVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           H+ CR+ +++ARPG+IIGKKG DIE +RKKLS  T SE+HL++ E+ KPE++A L+A+SI
Sbjct: 61  HRKCRVTIHTARPGVIIGKKGADIETLRKKLSAFTKSELHLNIVEIRKPELDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQ+ERRV FRRAMKR VQ+AMR GA G++V  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQMERRVSFRRAMKRGVQNAMRIGALGIRVNVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY T+ A T YG  G+KV++  + E+ + D   P A  R
Sbjct: 181 DIDYATSEATTPYGIIGVKVWI-FKGEILEHD---PQAHDR 217


>gi|83312223|ref|YP_422487.1| 30S ribosomal protein S3 [Magnetospirillum magneticum AMB-1]
 gi|123726906|sp|Q2W2J7|RS3_MAGMM RecName: Full=30S ribosomal protein S3
 gi|82947064|dbj|BAE51928.1| Ribosomal protein S3 [Magnetospirillum magneticum AMB-1]
          Length = 227

 Score =  275 bits (702), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 127/202 (62%), Positives = 162/202 (80%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  R+G+N TW+SRWFA    Y  LLH+DLK+R+YL+  L QAGV++++IER 
Sbjct: 1   MGQKVNPIGLRVGINRTWDSRWFA-DETYAKLLHQDLKLRKYLREKLAQAGVSRVVIERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  RI +++ARPG++IGKKG DIE +RK+LS MT SE+HL++ E+ KPE++A L+A+SI
Sbjct: 60  AKKARITIHTARPGVVIGKKGADIEVLRKELSKMTGSEVHLNIVEIRKPELDAQLVAESI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 120 AQQLERRVAFRRAMKRAVQSAMRLGAQGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            +DYG   A T YGSCG+KV+V
Sbjct: 180 DVDYGVGTAHTTYGSCGVKVWV 201


>gi|332187763|ref|ZP_08389497.1| ribosomal protein S3 [Sphingomonas sp. S17]
 gi|332012113|gb|EGI54184.1| ribosomal protein S3 [Sphingomonas sp. S17]
          Length = 236

 Score =  273 bits (699), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/223 (58%), Positives = 172/223 (77%), Gaps = 4/223 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK NPI  RL +N TW+SRWFA G +YG LL EDLKIR+Y+   L QA ++K++IER 
Sbjct: 1   MGQKSNPIGLRLQINRTWDSRWFAEGHDYGRLLLEDLKIRQYIMKTLPQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K CRI +++ARPG+IIGKKG DIEK+RKKL +MT+S++ L++ E+ KPEI+A L+AQ +
Sbjct: 61  AKLCRISIFAARPGVIIGKKGADIEKLRKKLGSMTSSDVSLNIVEIRKPEIDAKLVAQGV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMKRAVQSA+R GA+G+++   GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ADQLERRIAFRRAMKRAVQSALRLGAEGIRITCGGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVV 223
           ++DY  A A TAYG CG+KV++  + E+   D   P A+ R++
Sbjct: 181 NVDYAEAQAHTAYGVCGVKVWI-FKGEILGHD---PMAQDRLM 219


>gi|295688912|ref|YP_003592605.1| 30S ribosomal protein S3 [Caulobacter segnis ATCC 21756]
 gi|295430815|gb|ADG09987.1| ribosomal protein S3 [Caulobacter segnis ATCC 21756]
          Length = 250

 Score =  273 bits (699), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 126/212 (59%), Positives = 166/212 (78%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLGVN TW+SRWFA G++YG +LH+DL +R  L+  L QAGV++I+IER 
Sbjct: 1   MGQKVNPVGLRLGVNRTWDSRWFADGAQYGKMLHQDLAVRAALKKRLYQAGVSRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CRI +Y+ARPG+IIGKKG DI+K+RK LS  T  E+HL++ E+ KPE +A L+A+SI
Sbjct: 61  HKKCRITIYAARPGVIIGKKGADIDKLRKDLSVQTEGEVHLNIVEIRKPETDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR+ FRRAMKR++QSA+R GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIAFRRAMKRSIQSAVRLGAKGIRINVSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            ID+G A A+T YG  G+K ++  + EV + D
Sbjct: 181 DIDFGFAEAKTTYGIIGVKTWI-FKGEVLEHD 211


>gi|56695401|ref|YP_165749.1| 30S ribosomal protein S3 [Ruegeria pomeroyi DSS-3]
 gi|62287190|sp|Q5LW56|RS3_SILPO RecName: Full=30S ribosomal protein S3
 gi|56677138|gb|AAV93804.1| ribosomal protein S3 [Ruegeria pomeroyi DSS-3]
          Length = 235

 Score =  273 bits (699), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 134/221 (60%), Positives = 171/221 (77%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RL VN TW+SRW+A   +YG LL EDL IRE+++   KQAGVA+++IER 
Sbjct: 1   MGHKVNPIGMRLQVNRTWDSRWYADTKDYGNLLLEDLAIREFIKEECKQAGVARVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKKL+NMT+SE+HL++ EV KPE++A L+A+SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIETLRKKLANMTDSELHLNIVEVRKPEMDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ++MR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNSMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY  A A T YG  GIKV++  + E+ + D   P A  R
Sbjct: 181 DIDYALAEASTPYGIIGIKVWI-FKGEILEHD---PQARDR 217


>gi|103488289|ref|YP_617850.1| 30S ribosomal protein S3 [Sphingopyxis alaskensis RB2256]
 gi|123379480|sp|Q1GPA5|RS3_SPHAL RecName: Full=30S ribosomal protein S3
 gi|98978366|gb|ABF54517.1| SSU ribosomal protein S3P [Sphingopyxis alaskensis RB2256]
          Length = 235

 Score =  273 bits (698), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 133/223 (59%), Positives = 170/223 (76%), Gaps = 4/223 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK NPI  RL VN TW+SRWFA G +YG +L EDLKIR+Y+   L QA ++K++IER 
Sbjct: 1   MGQKSNPIGLRLQVNRTWDSRWFAEGEDYGRMLVEDLKIRQYVFKALPQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K CR+ +Y+ARPG+IIGKKG DIEK+RKKL  MT S++ L++ E+ KPE++A L+AQ I
Sbjct: 61  AKLCRVSIYAARPGVIIGKKGADIEKLRKKLGEMTGSDVSLNIVEIRKPEVDAKLVAQGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMKRAVQSAMR GA+G+++  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ADQLERRVAFRRAMKRAVQSAMRLGAEGIRINCAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVV 223
           ++DY  A A TAYG CGIKV++  + E+   D   P A  R++
Sbjct: 181 NVDYAEAEAHTAYGVCGIKVWI-FKGEILGHD---PMATDRLM 219


>gi|23014082|ref|ZP_00053919.1| COG0092: Ribosomal protein S3 [Magnetospirillum magnetotacticum
           MS-1]
          Length = 227

 Score =  273 bits (698), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 126/202 (62%), Positives = 161/202 (79%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  R+G+N TW+SRWFA    Y  LLH+DLK+R+YL+  L QAGV++++IER 
Sbjct: 1   MGQKVNPIGLRVGINRTWDSRWFA-DENYAKLLHQDLKLRKYLRDKLAQAGVSRVVIERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  RI +++ARPG++IGKKG DIE +RK+LS MT  E+HL++ E+ KPE++A L+A+SI
Sbjct: 60  AKKARITIHTARPGVVIGKKGADIEVLRKELSKMTGGEVHLNIVEIRKPELDAQLVAESI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 120 AQQLERRVAFRRAMKRAVQSAMRLGAQGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            +DYG   A T YGSCG+KV+V
Sbjct: 180 DVDYGVGTAHTTYGSCGVKVWV 201


>gi|288957428|ref|YP_003447769.1| small subunit ribosomal protein S3 [Azospirillum sp. B510]
 gi|288909736|dbj|BAI71225.1| small subunit ribosomal protein S3 [Azospirillum sp. B510]
          Length = 249

 Score =  273 bits (698), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 134/221 (60%), Positives = 170/221 (76%), Gaps = 5/221 (2%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RLG+N TW+SRWFA+  +Y  LLH+DLK+R YLQ  L+QAG ++++IER 
Sbjct: 1   MGQKINPIGLRLGINRTWDSRWFAK-RDYANLLHQDLKLRGYLQGRLQQAGCSRVVIERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  RI ++SARPG++IGKKG DIEK+R +LS MT SE+ L++ E+ KPEI+A LIA++I
Sbjct: 60  AKKARITIHSARPGVVIGKKGADIEKLRLELSKMTGSEVSLNIVEIRKPEIDARLIAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMKRAVQSAMR GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 120 ASQLERRVAFRRAMKRAVQSAMRLGAQGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDYG   A+T YG+CG+KV+V  + EV   D   P A+ +
Sbjct: 180 DIDYGVGTAKTTYGTCGVKVWV-FKGEVMAHD---PMAQDK 216


>gi|254467163|ref|ZP_05080574.1| ribosomal protein S3 [Rhodobacterales bacterium Y4I]
 gi|206688071|gb|EDZ48553.1| ribosomal protein S3 [Rhodobacterales bacterium Y4I]
          Length = 236

 Score =  273 bits (698), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 132/221 (59%), Positives = 172/221 (77%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RL VN TW+SRW+A   +YG LL ED+KIRE+++   KQAG+A+++IER 
Sbjct: 1   MGQKVNPIGMRLQVNRTWDSRWYADTKDYGDLLLEDIKIREFIKEECKQAGIARVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKKL+ MT+SE+HL++ EV KPE++A L+ +SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIEVLRKKLAKMTDSELHLNIVEVRKPELDAQLVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY  + A T YG  GIKV++  + E+ + D   P+A  R
Sbjct: 181 DIDYAHSEAMTPYGIIGIKVWI-FKGEIMEHD---PSARDR 217


>gi|146278562|ref|YP_001168721.1| 30S ribosomal protein S3 [Rhodobacter sphaeroides ATCC 17025]
 gi|189045323|sp|A4WVK2|RS3_RHOS5 RecName: Full=30S ribosomal protein S3
 gi|145556803|gb|ABP71416.1| SSU ribosomal protein S3P [Rhodobacter sphaeroides ATCC 17025]
          Length = 238

 Score =  273 bits (698), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/221 (58%), Positives = 170/221 (76%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RL VN TW+SRWFA   +YG LL EDLK+RE++  + KQAGV+K++IER 
Sbjct: 1   MGQKVNPIGMRLQVNRTWDSRWFAESKDYGNLLLEDLKMREFIHDYAKQAGVSKVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           H+ CR+ +++ARPG+IIGKKG DIE +RKKL+  T SE+HL++ E+ KPE++A L+A+SI
Sbjct: 61  HRKCRVTIHTARPGVIIGKKGADIETLRKKLAAFTKSELHLNIVEIRKPELDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQ+ERRV FRRAMKR VQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQMERRVSFRRAMKRGVQNAMRIGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY T+ A T YG  G+KV++  + E+ + D   P A  R
Sbjct: 181 DIDYATSEASTPYGIIGVKVWI-FKGEILEHD---PQAHDR 217


>gi|260432436|ref|ZP_05786407.1| ribosomal protein S3 [Silicibacter lacuscaerulensis ITI-1157]
 gi|260416264|gb|EEX09523.1| ribosomal protein S3 [Silicibacter lacuscaerulensis ITI-1157]
          Length = 236

 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 134/221 (60%), Positives = 171/221 (77%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RL VN TW+SRW+A   +YG LL EDLKIRE+++   KQAGVA+++IER 
Sbjct: 1   MGHKVNPIGMRLQVNRTWDSRWYADTKDYGDLLLEDLKIREFIKKECKQAGVARVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKKL+ MT+SE+HL++ EV KPE++A L+A+SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIEVLRKKLAAMTDSELHLNIVEVRKPELDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKR+VQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRSVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY  A A T YG  GIKV++  + E+ + D   P A  R
Sbjct: 181 DIDYAHAEAMTPYGIIGIKVWI-FKGEIMEHD---PQARDR 217


>gi|254512172|ref|ZP_05124239.1| ribosomal protein S3 [Rhodobacteraceae bacterium KLH11]
 gi|221535883|gb|EEE38871.1| ribosomal protein S3 [Rhodobacteraceae bacterium KLH11]
          Length = 236

 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 134/221 (60%), Positives = 170/221 (76%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RL VN TW+SRW+A   +YG LL EDLKIRE++    KQAGVA+++IER 
Sbjct: 1   MGHKVNPIGMRLQVNRTWDSRWYADTKDYGDLLLEDLKIREFINKECKQAGVARVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKKL+ MT+SE+HL++ EV KPE++A L+A+SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIEVLRKKLARMTDSELHLNIVEVRKPELDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKR+VQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRSVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY  A A T YG  GIKV++  + E+ + D   P A  R
Sbjct: 181 DIDYAHAEAMTPYGIIGIKVWI-FKGEIMEHD---PQARDR 217


>gi|94498482|ref|ZP_01305038.1| 30S ribosomal protein S3 [Sphingomonas sp. SKA58]
 gi|94422025|gb|EAT07070.1| 30S ribosomal protein S3 [Sphingomonas sp. SKA58]
          Length = 231

 Score =  272 bits (696), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 130/223 (58%), Positives = 169/223 (75%), Gaps = 4/223 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K NPI  RL +N TW+SRWFA G +YG LL EDLKIR+Y+   L QA ++K++IER 
Sbjct: 1   MGHKSNPIGLRLQINRTWDSRWFAEGQDYGRLLLEDLKIRQYIMKTLPQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K CR+ +Y+ARPG+IIGKKG DIEK+RKKL N+T+S++ L++ E+ KPE+++ L+AQ I
Sbjct: 61  AKLCRVSIYAARPGVIIGKKGADIEKLRKKLGNLTSSDVSLNIVEIRKPEVDSKLVAQGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMKRAVQSA+R GA+G+K+   GRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 ADQLERRVAFRRAMKRAVQSALRLGAEGIKITCGGRLGGAEIARVEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVV 223
           ++DY  A A TAYG CGIKV++  + E+   D   P A  R++
Sbjct: 181 NVDYAEATAHTAYGVCGIKVWI-FKGEILGHD---PMATDRLM 219


>gi|84685423|ref|ZP_01013321.1| 30S ribosomal protein S3 [Maritimibacter alkaliphilus HTCC2654]
 gi|84666580|gb|EAQ13052.1| 30S ribosomal protein S3 [Rhodobacterales bacterium HTCC2654]
          Length = 235

 Score =  271 bits (694), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 133/221 (60%), Positives = 173/221 (78%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RL VN TW+SRW+A  +EYG LL EDLKIRE+++   KQAGV++++IER 
Sbjct: 1   MGQKVNPIGMRLQVNRTWDSRWYADTNEYGDLLLEDLKIREFIKEECKQAGVSRVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKKL+ MT+SE+HL++ EV KPE++A L+A+SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIEVLRKKLAKMTDSELHLNIVEVRKPELDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRA Q++MR GA G++V  +GRL GAE++RTE   EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAAQNSMRMGALGIRVNCAGRLGGAEIARTEWLREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY  A A+T YG  GIKV++  + E+ + D   P+A  R
Sbjct: 181 DIDYALAEAKTPYGIIGIKVWI-FKGEIMEHD---PSARDR 217


>gi|300022547|ref|YP_003755158.1| ribosomal protein S3 [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524368|gb|ADJ22837.1| ribosomal protein S3 [Hyphomicrobium denitrificans ATCC 51888]
          Length = 275

 Score =  271 bits (694), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 129/224 (57%), Positives = 172/224 (76%), Gaps = 3/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+G+N TW+SRWFA   EYG LLHED  IR ++    ++AG++K++IER 
Sbjct: 1   MGQKVNPVGLRVGINRTWDSRWFAARGEYGKLLHEDRAIRNHIMKEQREAGISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ V +ARPG++IGKKG  IE++R  L+ +T+SE+HL++ E+ KPEI+ATLIA+ I
Sbjct: 61  HKKCRVTVQTARPGILIGKKGEKIERLRADLAKLTSSEVHLNILEIRKPEIDATLIAEGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSA+R GA G+++  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRAVQSALRLGAIGIRINVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVE 224
            ID+G  VA TAYG  GIKV+V  + E+ + D    AA+ ++ E
Sbjct: 181 DIDFGYGVARTAYGIIGIKVWV-FKGEIIEHDPM--AADKKLAE 221


>gi|84503636|ref|ZP_01001674.1| 30S ribosomal protein S3 [Oceanicola batsensis HTCC2597]
 gi|84387933|gb|EAQ00985.1| 30S ribosomal protein S3 [Oceanicola batsensis HTCC2597]
          Length = 240

 Score =  271 bits (693), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 132/221 (59%), Positives = 171/221 (77%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RL VN TW+SRW+A   +YG LL ED+++RE+++   KQAGVA+I+IER 
Sbjct: 1   MGQKVNPIGMRLQVNRTWDSRWYADTKDYGDLLLEDVRMREFIKEECKQAGVARIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKKL+ MT+SE+HL++ EV KPE++A L+ +SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIEVLRKKLAKMTDSELHLNIVEVRKPELDAALVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY  + A T YG  GIKV++  + E+ + D   P A  R
Sbjct: 181 DIDYAHSEASTPYGIIGIKVWI-FKGEILEHD---PQARDR 217


>gi|126728170|ref|ZP_01743986.1| 30S ribosomal protein S3 [Sagittula stellata E-37]
 gi|126711135|gb|EBA10185.1| 30S ribosomal protein S3 [Sagittula stellata E-37]
          Length = 240

 Score =  271 bits (692), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 130/221 (58%), Positives = 169/221 (76%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K NPI  RL +N TW+SRW+A   +YG LL EDL+IR+++    KQAG+A+++IER 
Sbjct: 1   MGNKTNPIGMRLQINRTWDSRWYADTKDYGDLLLEDLRIRDFIHTECKQAGIARVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKK++NMT+SE+HL++ EV KPE++ATL+ +SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIEVLRKKIANMTDSELHLNIVEVRKPELDATLVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY    A T YG  GIKV++  + E+ + D   P A  R
Sbjct: 181 DIDYANIEATTPYGIIGIKVWI-FKGEIMEHD---PQARDR 217


>gi|148260933|ref|YP_001235060.1| 30S ribosomal protein S3 [Acidiphilium cryptum JF-5]
 gi|326404331|ref|YP_004284413.1| 30S ribosomal protein S3 [Acidiphilium multivorum AIU301]
 gi|189044987|sp|A5FZV9|RS3_ACICJ RecName: Full=30S ribosomal protein S3
 gi|146402614|gb|ABQ31141.1| SSU ribosomal protein S3P [Acidiphilium cryptum JF-5]
 gi|325051193|dbj|BAJ81531.1| 30S ribosomal protein S3 [Acidiphilium multivorum AIU301]
          Length = 225

 Score =  271 bits (692), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 128/221 (57%), Positives = 172/221 (77%), Gaps = 5/221 (2%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NP+  RLG+N TW+SRWFA G++Y +LLH+DLK+RE+L   L  AGV+K+LIER 
Sbjct: 1   MGHKVNPVGLRLGINRTWDSRWFA-GADYASLLHDDLKLREHLLGRLSGAGVSKVLIERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +Y+ARPG++IGKKG DIE ++K+LS+M  +++ L++ E+ KPEI+A L+AQ+I
Sbjct: 60  AKKPRVTIYAARPGVVIGKKGQDIEVLKKELSSMAKADVSLNIVEIRKPEIDAALVAQNI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 120 AQQLERRVAFRRAMKRAVQSAMRLGAQGIRINCSGRLGGAEIARMEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            ID+G A A+T YG+CG+KV++  + E+   D   P A+ R
Sbjct: 180 DIDFGVATAKTTYGTCGVKVWI-FKGEIMAHD---PMAQDR 216


>gi|114797822|ref|YP_761523.1| 30S ribosomal protein S3 [Hyphomonas neptunium ATCC 15444]
 gi|122942159|sp|Q0BYC0|RS3_HYPNA RecName: Full=30S ribosomal protein S3
 gi|114737996|gb|ABI76121.1| ribosomal protein S3 [Hyphomonas neptunium ATCC 15444]
          Length = 245

 Score =  271 bits (692), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 131/224 (58%), Positives = 174/224 (77%), Gaps = 4/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N T +SRW+A  +++G LLHED+ IR+ ++  LKQAG++KI+IER 
Sbjct: 1   MGQKVNPIGLRLGINRTADSRWYADSADFGRLLHEDISIRKAIREKLKQAGISKIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK C I +++ARPGL+IGKKG DIE +RK+L+ MT+ E+ +++ E+ KPEI+ATLIA  I
Sbjct: 61  HKKCLITIHTARPGLVIGKKGGDIEVLRKELAKMTSDEVRVNLVEIRKPEIDATLIADDI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLERR  FRRAMKR++QSAMR GA+GVKV+ SGRL GAE++RTE Y EG VPL TLRA
Sbjct: 121 ARQLERRASFRRAMKRSIQSAMRLGAEGVKVVVSGRLGGAEIARTEKYAEGSVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVE 224
            IDYGTA A T YG  G+KV+V  + E+ + D   P A+ + +E
Sbjct: 181 DIDYGTAEATTTYGIIGVKVWV-YKGEILEHD---PMAQDKRLE 220


>gi|56551418|ref|YP_162257.1| 30S ribosomal protein S3 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241761066|ref|ZP_04759155.1| ribosomal protein S3 [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260752968|ref|YP_003225861.1| 30S ribosomal protein S3 [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|61215381|sp|Q5NQ59|RS3_ZYMMO RecName: Full=30S ribosomal protein S3
 gi|56542992|gb|AAV89146.1| ribosomal protein S3 [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374685|gb|EER64146.1| ribosomal protein S3 [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258552331|gb|ACV75277.1| ribosomal protein S3 [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 231

 Score =  270 bits (691), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 132/223 (59%), Positives = 169/223 (75%), Gaps = 4/223 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K NPI  RL +N TW+SRWFA+G +YG LL ED+KIR+++   L QA ++K++IER 
Sbjct: 1   MGHKSNPIGMRLQINRTWDSRWFAQGGDYGQLLLEDIKIRKFIMKTLPQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K CRI +Y+ARPG+IIGKKG DIEK+RKKL +MT S + L++ E+ KPEI+A L+AQ I
Sbjct: 61  AKLCRISIYAARPGVIIGKKGADIEKLRKKLDSMTESGVSLNIVEIRKPEIDAQLVAQGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMKRAVQSA+R GA GV++   GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ADQLERRVAFRRAMKRAVQSALRLGAQGVRITCGGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVV 223
           ++DY  A A TAYG CGIKV++  + E+   D   P A+ R++
Sbjct: 181 NVDYAEAEAHTAYGVCGIKVWI-FKGEIMAHD---PLAQDRLM 219


>gi|294675862|ref|YP_003576477.1| 30S ribosomal protein S3 [Rhodobacter capsulatus SB 1003]
 gi|294474682|gb|ADE84070.1| 30S ribosomal protein S3 [Rhodobacter capsulatus SB 1003]
          Length = 238

 Score =  270 bits (691), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 131/221 (59%), Positives = 168/221 (76%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RL VN TW+SRWFA   +YG LL EDL++RE++    KQAG+A+++IER 
Sbjct: 1   MGQKVNPIGMRLQVNRTWDSRWFAESKDYGNLLLEDLRMREFIHEEAKQAGIARVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKKL+N T SE+HL++ EV KPE+++ L+A+SI
Sbjct: 61  HKKCRVTIHAARPGVIIGKKGADIETLRKKLANFTASELHLNIVEVRKPELDSQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERRV FRRAMKRAVQ+AMR GA G++V  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 CQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY    A T YG  G+KV++  + E+ + D   P A  R
Sbjct: 181 DIDYALDEAMTPYGIIGVKVWI-FKGEIMEHD---PQARDR 217


>gi|307294980|ref|ZP_07574822.1| ribosomal protein S3 [Sphingobium chlorophenolicum L-1]
 gi|306879454|gb|EFN10672.1| ribosomal protein S3 [Sphingobium chlorophenolicum L-1]
          Length = 231

 Score =  270 bits (691), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 129/223 (57%), Positives = 171/223 (76%), Gaps = 4/223 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K NPI  RL +N TW+SRWFA G++YG LL EDLKIR+Y+  +L QA ++K++IER 
Sbjct: 1   MGHKSNPIGLRLQINRTWDSRWFAEGADYGRLLLEDLKIRQYIMKNLPQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K CR+ +Y+ARPG+IIGKKG DIEK+RKKL ++T+S++ L++ E+ KPE+++ L+AQ I
Sbjct: 61  AKLCRVSIYAARPGVIIGKKGADIEKLRKKLGSLTSSDVSLNIVEIRKPEVDSKLVAQGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMKRAVQSA+R GA+G+K+   GRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 ADQLERRVAFRRAMKRAVQSALRLGAEGIKITCGGRLGGAEIARVEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVV 223
           ++DY  A A TAYG CGIKV++  + E+   D   P A  R++
Sbjct: 181 NVDYAEAEAHTAYGVCGIKVWI-FKGEILGHD---PMATDRLM 219


>gi|294010619|ref|YP_003544079.1| ribosomal protein S3 [Sphingobium japonicum UT26S]
 gi|292673949|dbj|BAI95467.1| ribosomal protein S3 [Sphingobium japonicum UT26S]
          Length = 231

 Score =  269 bits (688), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/223 (57%), Positives = 170/223 (76%), Gaps = 4/223 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K NPI  RL +N TW+SRWFA G++YG LL EDLKIR+++  +L QA ++K++IER 
Sbjct: 1   MGHKSNPIGLRLQINRTWDSRWFAEGADYGRLLLEDLKIRQFIMKNLPQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K CR+ +Y+ARPG+IIGKKG DIEK+RKKL  +T+S++ L++ E+ KPEI++ L+AQ I
Sbjct: 61  AKLCRVSIYAARPGVIIGKKGADIEKLRKKLGGLTSSDVSLNIVEIRKPEIDSKLVAQGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMKRAVQSA+R GA+G+K+   GRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 ADQLERRVAFRRAMKRAVQSALRLGAEGIKITCGGRLGGAEIARVEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVV 223
           ++DY  A A TAYG CGIKV++  + E+   D   P A  R++
Sbjct: 181 NVDYAEAEAHTAYGVCGIKVWI-FKGEILGHD---PMATDRLM 219


>gi|310817003|ref|YP_003964967.1| 30S ribosomal protein S3 [Ketogulonicigenium vulgare Y25]
 gi|308755738|gb|ADO43667.1| 30S ribosomal protein S3 [Ketogulonicigenium vulgare Y25]
          Length = 238

 Score =  269 bits (687), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/224 (57%), Positives = 173/224 (77%), Gaps = 3/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NP+  RL VN TW+SRW+A   +YG LL EDLKI+++++   KQAG++ ++IER 
Sbjct: 1   MGNKVNPVGMRLQVNRTWDSRWYADTKDYGNLLLEDLKIKDFVRKEAKQAGISHVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKKLS +T+SE+HL++ EV KPE++A L+ +SI
Sbjct: 61  HKKCRVTIHAARPGVIIGKKGADIETLRKKLSALTDSELHLNIVEVRKPELDAALVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVE 224
            IDY  + A+TAYG  GIKV++  + E+ + D    A + R+ E
Sbjct: 181 DIDYALSEAQTAYGIIGIKVWI-FKGEILEHDPQ--AHDRRITE 221


>gi|315497979|ref|YP_004086783.1| ribosomal protein s3 [Asticcacaulis excentricus CB 48]
 gi|315415991|gb|ADU12632.1| ribosomal protein S3 [Asticcacaulis excentricus CB 48]
          Length = 251

 Score =  269 bits (687), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 128/212 (60%), Positives = 165/212 (77%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLGVN TW+SRWFA   EY  LLH+DLKIR+ L+  L  AGV++I+IER 
Sbjct: 1   MGQKVNPIGLRLGVNRTWDSRWFAARQEYAKLLHQDLKIRKELKEKLNAAGVSRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CRI +Y+ARPG++IGKKG DI+K+RK +S +T  E+ L++ EV KPE+++ L+A+SI
Sbjct: 61  HKKCRITIYAARPGVVIGKKGADIDKLRKDISALTEGEVFLNLVEVRKPEVDSQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKR++QSAMR GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRSIQSAMRLGAKGIRMNLSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            ID+G A A T YG  G+KV++  + EV + D
Sbjct: 181 DIDFGFAEALTTYGIIGVKVWI-FKGEVLEHD 211


>gi|114766893|ref|ZP_01445815.1| 30S ribosomal protein S3 [Pelagibaca bermudensis HTCC2601]
 gi|114540939|gb|EAU43999.1| 30S ribosomal protein S3 [Roseovarius sp. HTCC2601]
          Length = 236

 Score =  269 bits (687), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 133/221 (60%), Positives = 168/221 (76%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K NPI  RL VN TW+SRW+A   +YG LL ED+ IRE++    KQAGVA+++IER 
Sbjct: 1   MGNKTNPIGMRLQVNRTWDSRWYADTKDYGDLLLEDIAIREFIHEECKQAGVARVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ V++ARPG+IIGKKG DIE +RKKL++MT+SE+HL++ EV KPE++A L+ +SI
Sbjct: 61  HKKCRVTVHTARPGVIIGKKGADIEVLRKKLASMTDSELHLNIVEVRKPELDARLVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY    A T YG  GIKV++  + E+ + D   PAA  R
Sbjct: 181 DIDYANVEATTPYGIIGIKVWI-FKGEIMEHD---PAARDR 217


>gi|99080096|ref|YP_612250.1| 30S ribosomal protein S3 [Ruegeria sp. TM1040]
 gi|259416631|ref|ZP_05740551.1| ribosomal protein S3 [Silicibacter sp. TrichCH4B]
 gi|122984457|sp|Q1GK28|RS3_SILST RecName: Full=30S ribosomal protein S3
 gi|99036376|gb|ABF62988.1| SSU ribosomal protein S3P [Ruegeria sp. TM1040]
 gi|259348070|gb|EEW59847.1| ribosomal protein S3 [Silicibacter sp. TrichCH4B]
          Length = 239

 Score =  269 bits (687), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 129/221 (58%), Positives = 171/221 (77%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NP+  RL +N TW+SRW+A   +YG LL ED+KIRE+++   KQAGVA+++IER 
Sbjct: 1   MGHKVNPVGMRLQINRTWDSRWYADTKDYGDLLLEDIKIREFIKEECKQAGVARVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKK+++MT+SE+HL++ EV KPE++A L+ +SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIEVLRKKIASMTDSELHLNIVEVRKPELDAQLVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY  + A T YG  GIKV++  + E+ + D   P A  R
Sbjct: 181 DIDYAHSEASTPYGIIGIKVWI-FKGEIMEHD---PQARDR 217


>gi|260577175|ref|ZP_05845152.1| ribosomal protein S3 [Rhodobacter sp. SW2]
 gi|259020649|gb|EEW23968.1| ribosomal protein S3 [Rhodobacter sp. SW2]
          Length = 236

 Score =  269 bits (687), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 132/221 (59%), Positives = 167/221 (75%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RL VN TW+SRWFA   +YG LL EDLK+R ++    KQAGV+K++IER 
Sbjct: 1   MGQKVNPIGMRLQVNRTWDSRWFAESKDYGNLLLEDLKMRAFIHEECKQAGVSKVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKKL+  T SE+HL++ EV KPE++A L+A+SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIETLRKKLTVFTKSELHLNIVEVRKPELDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERRV FRRAMKRAVQ+AMR GA G++V  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 TQQLERRVSFRRAMKRAVQNAMRIGALGIRVNVSGRLGGAEIARVEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY  + A TAYG  G+KV++  + E+ + D   P A  R
Sbjct: 181 DIDYALSEAMTAYGIIGVKVWI-FKGEILEHD---PQAHDR 217


>gi|58038849|ref|YP_190813.1| 30S ribosomal protein S3 [Gluconobacter oxydans 621H]
 gi|62287182|sp|Q5FTY9|RS3_GLUOX RecName: Full=30S ribosomal protein S3
 gi|58001263|gb|AAW60157.1| SSU ribosomal protein S3P [Gluconobacter oxydans 621H]
          Length = 225

 Score =  268 bits (686), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 127/221 (57%), Positives = 170/221 (76%), Gaps = 5/221 (2%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RLGVN TW+SRW+A G +Y  LLHEDLK+R +L+  L  AGV++++IER 
Sbjct: 1   MGHKVNPIGLRLGVNRTWDSRWYA-GQDYARLLHEDLKLRAFLRRKLSGAGVSRVVIERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +Y+ARPG++IGKKG DI+ +RK+LS M  +++ L++ E+ KPEI+ATL+A++I
Sbjct: 60  AKKPRVTIYAARPGVVIGKKGQDIDALRKELSRMAKTDVALNIVEIRKPEIDATLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRA+QSAMR GA G+++   GRL GAE++R E Y EGRVPL TLRA
Sbjct: 120 AQQLERRVAFRRAMKRAIQSAMRLGAQGIRITCGGRLGGAEIARAEKYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDYGTA A+T YG+CG+KV++  + E+   D   P A+ R
Sbjct: 180 DIDYGTATAKTTYGTCGVKVWI-FKGEILAHD---PLAQDR 216


>gi|149915850|ref|ZP_01904374.1| 30S ribosomal protein S3 [Roseobacter sp. AzwK-3b]
 gi|149810173|gb|EDM70019.1| 30S ribosomal protein S3 [Roseobacter sp. AzwK-3b]
          Length = 235

 Score =  268 bits (685), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 129/221 (58%), Positives = 171/221 (77%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RL VN TW+SRW+A   +YG LL EDLKIR++++   KQAG+++++IER 
Sbjct: 1   MGNKVNPIGMRLQVNRTWDSRWYADTKDYGNLLLEDLKIRDFIEKECKQAGISRVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKKL+ MT+SE+HL++ EV KPE++A L+A+SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIEGLRKKLARMTDSELHLNIVEVRKPELDAALVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKR+VQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRSVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY    A T YG  G+KV++  + E+ + D   P+A  R
Sbjct: 181 DIDYAHKEAVTPYGIIGVKVWI-FKGEIMEHD---PSARDR 217


>gi|209964046|ref|YP_002296961.1| 30S ribosomal protein S3 [Rhodospirillum centenum SW]
 gi|226697750|sp|B6IRR2|RS3_RHOCS RecName: Full=30S ribosomal protein S3
 gi|209957512|gb|ACI98148.1| ribosomal protein S3 [Rhodospirillum centenum SW]
          Length = 225

 Score =  268 bits (684), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 128/225 (56%), Positives = 170/225 (75%), Gaps = 4/225 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N TW+SRWFA   +Y  LLH+DLK+R++LQ  L+ AGV++I+IER 
Sbjct: 1   MGQKVNPVGLRLGINRTWDSRWFA-ARDYAVLLHQDLKLRKFLQGKLQAAGVSRIVIERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +++ARPG++IGKKG DIEK+R  L  M   E+ L++ E+ KPE++A LIA++I
Sbjct: 60  AKKARVTIHTARPGVVIGKKGADIEKLRGTLGTMAGGEVSLNIVEIRKPELDARLIAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMKRAVQSAMR GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 120 ASQLERRVAFRRAMKRAVQSAMRLGAQGIRINCSGRLGGAEIARLEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDYGTA A+T YG+CG+KV+V  + E+   D    A + R +E+
Sbjct: 180 DIDYGTATAKTTYGTCGVKVWV-FKGEILAHDPM--AQDKRAMEQ 221


>gi|254475420|ref|ZP_05088806.1| ribosomal protein S3 [Ruegeria sp. R11]
 gi|214029663|gb|EEB70498.1| ribosomal protein S3 [Ruegeria sp. R11]
          Length = 235

 Score =  267 bits (683), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 128/221 (57%), Positives = 171/221 (77%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NP+  RL VN TW+SRW+A   +YG LL EDL+IR++++   KQAG+A+++IER 
Sbjct: 1   MGHKVNPVGMRLQVNRTWDSRWYADTKDYGDLLLEDLRIRDFIKEECKQAGIARVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKK+++MT+SE+HL++ EV KPE++A L+ +SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIEVLRKKIASMTDSELHLNIVEVRKPELDAQLVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY  + A T YG  GIKV++  + E+ + D   P A  R
Sbjct: 181 DIDYAHSEASTPYGIIGIKVWI-FKGEIMEHD---PQARDR 217


>gi|258542033|ref|YP_003187466.1| 30S ribosomal protein S3 [Acetobacter pasteurianus IFO 3283-01]
 gi|329114212|ref|ZP_08242974.1| 30S ribosomal protein S3 [Acetobacter pomorum DM001]
 gi|256633111|dbj|BAH99086.1| SSU ribosomal protein S3P [Acetobacter pasteurianus IFO 3283-01]
 gi|256636168|dbj|BAI02137.1| SSU ribosomal protein S3P [Acetobacter pasteurianus IFO 3283-03]
 gi|256639223|dbj|BAI05185.1| SSU ribosomal protein S3P [Acetobacter pasteurianus IFO 3283-07]
 gi|256642277|dbj|BAI08232.1| SSU ribosomal protein S3P [Acetobacter pasteurianus IFO 3283-22]
 gi|256645332|dbj|BAI11280.1| SSU ribosomal protein S3P [Acetobacter pasteurianus IFO 3283-26]
 gi|256648387|dbj|BAI14328.1| SSU ribosomal protein S3P [Acetobacter pasteurianus IFO 3283-32]
 gi|256651440|dbj|BAI17374.1| SSU ribosomal protein S3P [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654431|dbj|BAI20358.1| SSU ribosomal protein S3P [Acetobacter pasteurianus IFO 3283-12]
 gi|326696288|gb|EGE47967.1| 30S ribosomal protein S3 [Acetobacter pomorum DM001]
          Length = 225

 Score =  267 bits (683), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 128/221 (57%), Positives = 171/221 (77%), Gaps = 5/221 (2%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RLG+N TW+SRW+A  S+Y  LLHEDLK+R +L+  L  AGV++++IER 
Sbjct: 1   MGHKVNPIGLRLGINRTWDSRWYA-DSDYSKLLHEDLKLRAFLRRKLVGAGVSRVVIERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +Y+ARPG++IGKKG DI+ +RK+L+ M  +E+ L++ E+ KPEI+ATL+A++I
Sbjct: 60  AKKPRVTIYAARPGVVIGKKGQDIDALRKELTRMAGTEVALNIVEIRKPEIDATLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 120 AQQLERRVAFRRAMKRAVQSAMRLGAQGIRINCSGRLGGAEIARIEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDYGTA A+T YG+CG+KV++  + E+   D   P A+ R
Sbjct: 180 DIDYGTATAKTTYGTCGVKVWI-FKGEILAHD---PMAQDR 216


>gi|159042844|ref|YP_001531638.1| 30S ribosomal protein S3 [Dinoroseobacter shibae DFL 12]
 gi|189044976|sp|A8LM60|RS3_DINSH RecName: Full=30S ribosomal protein S3
 gi|157910604|gb|ABV92037.1| ribosomal protein S3 RpsC [Dinoroseobacter shibae DFL 12]
          Length = 240

 Score =  267 bits (682), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 128/221 (57%), Positives = 170/221 (76%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RL VN TW+SRW+A   +YG LL EDLKIRE+++   KQAG+++++IER 
Sbjct: 1   MGNKVNPIGMRLQVNRTWDSRWYADTKDYGDLLLEDLKIREFIKEECKQAGISRVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +R+K++ MT+SE+HL++ EV KPE++A L+ +SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIEGLRRKIAAMTDSELHLNIVEVRKPELDAALVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+A+R GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAVRMGAQGIRVNLAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            ID+    A TAYG  GIKV++  + E+ + D   P A  R
Sbjct: 181 DIDFANVEATTAYGIIGIKVWI-FKGEIMEHD---PQARDR 217


>gi|255263196|ref|ZP_05342538.1| ribosomal protein S3 [Thalassiobium sp. R2A62]
 gi|255105531|gb|EET48205.1| ribosomal protein S3 [Thalassiobium sp. R2A62]
          Length = 235

 Score =  267 bits (682), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 131/221 (59%), Positives = 169/221 (76%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RL VN TW+SRW+A   +YG LL EDL++RE+++    QAGV++++IER 
Sbjct: 1   MGNKVNPIGMRLQVNRTWDSRWYADTKDYGDLLLEDLRMREFIKKECHQAGVSRVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ V++ARPG+IIGKKG DIE +RKKL+ MT+SE+HL++ EV KPE++A L+ +SI
Sbjct: 61  HKKCRVTVHTARPGVIIGKKGADIETLRKKLAAMTDSELHLNIVEVRKPELDAALVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAMRMGALGIRVNLAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY    A TAYG  GIK ++  + E+ + D   PAA  R
Sbjct: 181 DIDYAHVEALTAYGIIGIKTWI-FKGEIMEHD---PAARDR 217


>gi|148554268|ref|YP_001261850.1| 30S ribosomal protein S3 [Sphingomonas wittichii RW1]
 gi|189045373|sp|A5V5Z6|RS3_SPHWW RecName: Full=30S ribosomal protein S3
 gi|148499458|gb|ABQ67712.1| SSU ribosomal protein S3P [Sphingomonas wittichii RW1]
          Length = 231

 Score =  267 bits (682), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 127/223 (56%), Positives = 172/223 (77%), Gaps = 4/223 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK NPI  RL +N TW+SRW+A G++YG LL EDLKIR+++   + QA ++K++IER 
Sbjct: 1   MGQKSNPIGMRLQINRTWDSRWYADGADYGRLLLEDLKIRKHIMKAIPQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K CRI VY+ARPG+IIGKKG DIEK+R+ L  MT+S++ L++ E+ KPEI++ L+AQ +
Sbjct: 61  AKLCRISVYAARPGVIIGKKGADIEKLRRALGKMTSSDVSLNIVEIRKPEIDSKLVAQGV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMKRAVQSA+R GA+G+++  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ADQLERRIAFRRAMKRAVQSALRLGAEGIRITCAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVV 223
           ++DY  A A TAYG CGIKV++  + E+   D   P A+ R++
Sbjct: 181 NVDYAEAEAHTAYGVCGIKVWI-FKGEILGHD---PLAQDRLM 219


>gi|260427444|ref|ZP_05781423.1| ribosomal protein S3 [Citreicella sp. SE45]
 gi|260421936|gb|EEX15187.1| ribosomal protein S3 [Citreicella sp. SE45]
          Length = 236

 Score =  267 bits (682), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 131/221 (59%), Positives = 167/221 (75%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K NPI  RL VN TW+SRW+A   +YG LL ED+ IR+++    KQAGVA+++IER 
Sbjct: 1   MGNKTNPIGMRLQVNRTWDSRWYADTKDYGDLLLEDIAIRDFIHEECKQAGVARVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ ++SARPG+IIGKKG DIE +RKKL+ MT+SE+HL++ EV KPE++A L+ +SI
Sbjct: 61  HKKCRVTIHSARPGVIIGKKGADIEVLRKKLAKMTDSELHLNIVEVRKPELDARLVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY    A T YG  GIKV++  + E+ + D   P+A  R
Sbjct: 181 DIDYANVEATTPYGIIGIKVWI-FKGEIMEHD---PSARER 217


>gi|83949789|ref|ZP_00958522.1| 30S ribosomal protein S3 [Roseovarius nubinhibens ISM]
 gi|83837688|gb|EAP76984.1| 30S ribosomal protein S3 [Roseovarius nubinhibens ISM]
          Length = 235

 Score =  266 bits (681), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 129/221 (58%), Positives = 169/221 (76%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RL VN TW+SRW+A   +YG LL ED+ IRE+++   KQAG+++++IER 
Sbjct: 1   MGNKVNPIGMRLQVNRTWDSRWYANTKDYGNLLLEDIAIREFIEKECKQAGISRVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKKL+ MT+SE+HL++ EV KPE++A L+  SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIETLRKKLAAMTDSELHLNIVEVRKPELDAALVGDSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY  + A T YG  GIKV++  + E+ + D   P+A  R
Sbjct: 181 DIDYAHSEAMTPYGIIGIKVWI-FKGEIMEHD---PSARDR 217


>gi|89070551|ref|ZP_01157840.1| 30S ribosomal protein S3 [Oceanicola granulosus HTCC2516]
 gi|89043858|gb|EAR50056.1| 30S ribosomal protein S3 [Oceanicola granulosus HTCC2516]
          Length = 235

 Score =  266 bits (681), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/221 (57%), Positives = 170/221 (76%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RL VN TW+SRW+A   +YG LL ED+KIRE+++   KQAG+++++IER 
Sbjct: 1   MGNKVNPIGMRLQVNRTWDSRWYADTKDYGDLLLEDIKIREFIKEECKQAGISRVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           H+ CR+ +++ARPG+IIGKKG DIE +RKKL+ MT+SE+HL++ EV KPE++A L+ +SI
Sbjct: 61  HRKCRVTIHTARPGVIIGKKGADIETLRKKLAKMTDSELHLNIVEVRKPELDAALVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKR+VQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRSVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY  + A T YG  GIKV++  + E+ + D   P A  R
Sbjct: 181 DIDYAHSEAVTPYGIIGIKVWI-FKGEIMEHD---PQARDR 217


>gi|163739444|ref|ZP_02146854.1| 30S ribosomal protein S3 [Phaeobacter gallaeciensis BS107]
 gi|163740238|ref|ZP_02147632.1| 30S ribosomal protein S3 [Phaeobacter gallaeciensis 2.10]
 gi|161386096|gb|EDQ10471.1| 30S ribosomal protein S3 [Phaeobacter gallaeciensis 2.10]
 gi|161387197|gb|EDQ11556.1| 30S ribosomal protein S3 [Phaeobacter gallaeciensis BS107]
          Length = 235

 Score =  266 bits (680), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 128/221 (57%), Positives = 170/221 (76%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NP+  RL VN TW+SRW+A   +YG LL EDL+IR++++   KQAG+A+++IER 
Sbjct: 1   MGHKVNPVGMRLQVNRTWDSRWYADTKDYGDLLLEDLRIRDFIKEECKQAGIARVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKKL++MT+SE+HL++ EV KPE++A L+ +SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIEVLRKKLASMTDSELHLNIVEVRKPELDAQLVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY  + A T YG  GIK ++  + E+ + D   P A  R
Sbjct: 181 DIDYAHSEAMTPYGIIGIKTWI-FKGEIMEHD---PQARDR 217


>gi|254463292|ref|ZP_05076708.1| ribosomal protein S3 [Rhodobacterales bacterium HTCC2083]
 gi|206679881|gb|EDZ44368.1| ribosomal protein S3 [Rhodobacteraceae bacterium HTCC2083]
          Length = 235

 Score =  266 bits (679), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 129/221 (58%), Positives = 167/221 (75%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K NPI  RL VN TW+SRW+A   +YG LL EDL IR+++    KQAG+A+++IER 
Sbjct: 1   MGNKTNPIGMRLQVNRTWDSRWYADSKDYGNLLLEDLAIRDFVNKECKQAGIARVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKKL+ +T+SE+HL++ EV KPE++A L+ +SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIETLRKKLAKITDSELHLNIVEVRKPELDAQLVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           +QQLERRV FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 SQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY    AETAYG  GIK ++  + E+ + D   P A  R
Sbjct: 181 DIDYAHVEAETAYGIIGIKTWI-FKGEIMEHD---PQARDR 217


>gi|253998020|ref|YP_003050083.1| 30S ribosomal protein S3 [Methylovorus sp. SIP3-4]
 gi|313200087|ref|YP_004038745.1| 30S ribosomal protein S3 [Methylovorus sp. MP688]
 gi|253984699|gb|ACT49556.1| ribosomal protein S3 [Methylovorus sp. SIP3-4]
 gi|312439403|gb|ADQ83509.1| ribosomal protein S3 [Methylovorus sp. MP688]
          Length = 237

 Score =  265 bits (678), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/230 (55%), Positives = 169/230 (73%), Gaps = 5/230 (2%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W+SRW+A    + A+L+ D+K+R++L+  L  A V+KI+IER 
Sbjct: 1   MGQKIHPFGFRLSVQKNWSSRWYANSKNFPAMLNSDIKVRDFLKKKLSHAAVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN +I +YSARPG++IGKKG DIE +R  L  +    +HL++ EV KPEI+ATLIA+SI
Sbjct: 61  AKNAKITIYSARPGVVIGKKGEDIESLRSSLQGLMGVPVHLNIEEVRKPEIDATLIAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV+FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV----SDSDSTIPAAEHRVVEKD 226
            IDYG A A+T YG  GIKV+V  + EV    ++  + +PA   + V K 
Sbjct: 181 DIDYGVAEAKTTYGIIGIKVWV-FKGEVFGTHAEQQAAVPAEPEKKVRKS 229


>gi|126739684|ref|ZP_01755376.1| 30S ribosomal protein S3 [Roseobacter sp. SK209-2-6]
 gi|126719330|gb|EBA16040.1| 30S ribosomal protein S3 [Roseobacter sp. SK209-2-6]
          Length = 236

 Score =  265 bits (678), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/221 (57%), Positives = 169/221 (76%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NP+  RL VN TW+SRW+A   ++G LL ED++IR++++   KQAGVA+++IER 
Sbjct: 1   MGHKVNPVGMRLQVNRTWDSRWYADTKDFGDLLLEDIRIRDFIKTECKQAGVARVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKKL+ MT+SE+HL++ EV KPE++A L+ +SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIEVLRKKLAAMTDSELHLNIVEVRKPELDAQLVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY  + A T YG  GIK ++  + E+ + D   P A  R
Sbjct: 181 DIDYAHSEAMTPYGIIGIKTWI-FKGEIMEHD---PQARDR 217


>gi|296533993|ref|ZP_06896509.1| 30S ribosomal protein S3 [Roseomonas cervicalis ATCC 49957]
 gi|296265659|gb|EFH11768.1| 30S ribosomal protein S3 [Roseomonas cervicalis ATCC 49957]
          Length = 225

 Score =  265 bits (677), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 123/202 (60%), Positives = 160/202 (79%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RLG+N TW+SRWFA G +Y  LLH+DLK+R+ L+  LK AGV+K++IER 
Sbjct: 1   MGHKVNPIGLRLGINRTWDSRWFA-GDDYARLLHDDLKLRKTLKDRLKGAGVSKVIIERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +++ARPG++IGKKG DIE +RK L+ +  +E+ L++ E+ KPEI A L+A+SI
Sbjct: 60  AKKPRVTIHAARPGVVIGKKGADIEVLRKDLAKLAGAEVALNIVEIRKPEIEAQLVAESI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA G+++   GRL GAE++R E Y EGRVPL TLRA
Sbjct: 120 AQQLERRVAFRRAMKRAVQSAMRLGAGGIRINCGGRLGGAEIARMEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYGTA A+T YG+CG+KV++
Sbjct: 180 DIDYGTATAKTTYGTCGVKVWI 201


>gi|85703995|ref|ZP_01035098.1| 30S ribosomal protein S3 [Roseovarius sp. 217]
 gi|149203518|ref|ZP_01880488.1| 30S ribosomal protein S3 [Roseovarius sp. TM1035]
 gi|85671315|gb|EAQ26173.1| 30S ribosomal protein S3 [Roseovarius sp. 217]
 gi|149143351|gb|EDM31390.1| 30S ribosomal protein S3 [Roseovarius sp. TM1035]
          Length = 235

 Score =  265 bits (677), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 130/221 (58%), Positives = 167/221 (75%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RL VN TW+SRW+A   +YG LL EDL +R+++    KQAG+++++IER 
Sbjct: 1   MGNKVNPIGMRLQVNRTWDSRWYADTKDYGNLLLEDLAMRKFIGEECKQAGISRVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKKL+ MT SE+HL++ EV KPE++A L+ +SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIEGLRKKLAAMTASELHLNIVEVRKPELDAALVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+AMR GA G++V  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY    A TAYG  GIKV++  + E+ + D   P A  R
Sbjct: 181 DIDYAPVEATTAYGIIGIKVWI-FKGEIMEHD---PGARDR 217


>gi|253995724|ref|YP_003047788.1| 30S ribosomal protein S3 [Methylotenera mobilis JLW8]
 gi|253982403|gb|ACT47261.1| ribosomal protein S3 [Methylotenera mobilis JLW8]
          Length = 240

 Score =  265 bits (677), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 123/202 (60%), Positives = 154/202 (76%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI FRL V   W SRW+A    + A+L  D+K+RE+L   L  A V++I+IER 
Sbjct: 1   MGQKINPIGFRLSVQKNWASRWYANSKNFPAMLQSDIKVREFLNKKLASAAVSRIMIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN +I +YSARPG++IGKKG DIE +R  L  +    +HL++ EV KPE++ATLIAQSI
Sbjct: 61  AKNAKITIYSARPGVVIGKKGEDIESLRSSLQGLMGVPVHLNIEEVRKPELDATLIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV+FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  GIKV+V
Sbjct: 181 DIDYGVAEASTTYGIIGIKVWV 202


>gi|118595329|ref|ZP_01552676.1| 30S ribosomal protein S3 [Methylophilales bacterium HTCC2181]
 gi|118441107|gb|EAV47734.1| 30S ribosomal protein S3 [Methylophilales bacterium HTCC2181]
          Length = 292

 Score =  265 bits (677), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 119/202 (58%), Positives = 157/202 (77%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI FRLGV   W+S+W++    + +LL  D+K+RE+L   L  A V++I+IER 
Sbjct: 1   MGQKINPIGFRLGVTKDWSSKWYSNSKNFASLLQNDIKVREFLNKKLANAAVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN +I +YSARPG++IGKKG DIE +R  L ++    + L++ E+ KPE++ATLIAQSI
Sbjct: 61  AKNAKITIYSARPGIVIGKKGEDIETLRSSLQSLMGIPVQLNIEEIRKPEVDATLIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV+FRRAMKRA+Q+AMR GA GVK+++SGRLNG E++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVMFRRAMKRAMQNAMRLGAQGVKIMSSGRLNGIEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A+T YG  GIKV++
Sbjct: 181 DIDYGVARAQTTYGIIGIKVWI 202


>gi|329850213|ref|ZP_08265058.1| ribosomal protein S3 [Asticcacaulis biprosthecum C19]
 gi|328840528|gb|EGF90099.1| ribosomal protein S3 [Asticcacaulis biprosthecum C19]
          Length = 253

 Score =  265 bits (677), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 129/221 (58%), Positives = 169/221 (76%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK NPI  RLG+N TW+SRWFA+  EY  LLH+DL IR+ L+  L  AGV++I+IER 
Sbjct: 1   MGQKANPIGLRLGINRTWDSRWFAQRQEYAKLLHQDLLIRKVLKEKLNAAGVSRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CRI +Y+ARPG++IGKKG DI+K+RK +S +T+ E+ L++ EV KPE++A L+A+SI
Sbjct: 61  HKKCRITIYAARPGVVIGKKGADIDKLRKDVSVITDGEVFLNLVEVRKPEVDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKR++QSAMR GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRSIQSAMRLGAKGIRMNLSGRLGGAEIARMEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            ID G A A T YG  G+KV++  + EV + D   P+A+ +
Sbjct: 181 DIDMGFAEALTTYGIIGVKVWI-FKGEVLEHD---PSAQDK 217


>gi|114327224|ref|YP_744381.1| 30S ribosomal protein S3 [Granulibacter bethesdensis CGDNIH1]
 gi|122327797|sp|Q0BUP4|RS3_GRABC RecName: Full=30S ribosomal protein S3
 gi|114315398|gb|ABI61458.1| SSU ribosomal protein S3P [Granulibacter bethesdensis CGDNIH1]
          Length = 225

 Score =  265 bits (677), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 126/221 (57%), Positives = 169/221 (76%), Gaps = 5/221 (2%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RLG+N TW+SRW+A G +Y  LLH+DLK+R +L+  L  AGV++++IER 
Sbjct: 1   MGHKVNPIGLRLGINRTWDSRWYA-GGDYSRLLHDDLKLRGHLRKKLSGAGVSRVVIERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +Y+ARPG++IGKKG DIE +RK L+ M  +++ L++ E+ KPEI+ATL+A++I
Sbjct: 60  AKKPRVTIYAARPGVVIGKKGQDIEALRKGLTGMAGTDVALNIVEIRKPEIDATLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 120 AQQLERRVAFRRAMKRAVQSAMRLGAQGIRINCSGRLGGAEIARIEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDYG A A+T YG+CG+KV++  + E+   D   P A+ R
Sbjct: 180 DIDYGVATAKTTYGTCGVKVWI-FKGEILAQD---PMAQDR 216


>gi|163733819|ref|ZP_02141261.1| 30S ribosomal protein S3 [Roseobacter litoralis Och 149]
 gi|161392930|gb|EDQ17257.1| 30S ribosomal protein S3 [Roseobacter litoralis Och 149]
          Length = 235

 Score =  265 bits (677), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 129/221 (58%), Positives = 168/221 (76%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RL VN TW+SRW+A   +YG LL EDL IR++++    QAGVA+++IER 
Sbjct: 1   MGNKVNPIGMRLQVNRTWDSRWYADTKDYGDLLLEDLAIRDFIKKECHQAGVARVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +R+K++ MT SE+HL++ EV KPE++A L+ +SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIEGLRQKIAKMTASELHLNIVEVRKPELDAALVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY    A+TAYG  GIK ++  + E+ + D   PAA  R
Sbjct: 181 DIDYAHVEAKTAYGIIGIKTWI-FKGEIMEHD---PAARDR 217


>gi|297537537|ref|YP_003673306.1| 30S ribosomal protein S3 [Methylotenera sp. 301]
 gi|297256884|gb|ADI28729.1| ribosomal protein S3 [Methylotenera sp. 301]
          Length = 241

 Score =  265 bits (676), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 129/226 (57%), Positives = 164/226 (72%), Gaps = 8/226 (3%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+PI FRL V   W+SRW+A    + A+L  D+K+RE+L   L  A V++ILIER 
Sbjct: 1   MGQKIHPIGFRLSVQKNWSSRWYANSKNFPAMLQGDIKVREFLNKKLASAAVSRILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN +I +YSARPG++IGKKG DIE +R  L  +    +HL++ EV KPEI+ATLIAQSI
Sbjct: 61  AKNAKITIYSARPGVVIGKKGEDIESLRATLQGLMGVPVHLNIEEVRKPEIDATLIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV+FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD-------STIPAAE 219
            IDYG A A T YG  GIKV+V  + E+   +       +T P AE
Sbjct: 181 DIDYGVAEASTTYGIIGIKVWV-FKGEIFAGNVQAPIGATTTPVAE 225


>gi|110678727|ref|YP_681734.1| 30S ribosomal protein S3 [Roseobacter denitrificans OCh 114]
 gi|123065752|sp|Q16AE5|RS3_ROSDO RecName: Full=30S ribosomal protein S3
 gi|109454843|gb|ABG31048.1| ribosomal protein S3 [Roseobacter denitrificans OCh 114]
          Length = 235

 Score =  265 bits (676), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 129/221 (58%), Positives = 167/221 (75%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RL VN TW+SRW+A   +YG LL EDL IR++++    QAGVA+++IER 
Sbjct: 1   MGNKVNPIGMRLQVNRTWDSRWYADTKDYGDLLLEDLAIRDFIKKECHQAGVARVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +R+K++ MT SE+HL++ EV KPE++A L+ +SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIEGLRQKIAKMTASELHLNIVEVRKPELDAALVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY    A TAYG  GIK ++  + E+ + D   PAA  R
Sbjct: 181 DIDYAHVEAATAYGIIGIKTWI-FKGEIMEHD---PAARDR 217


>gi|86135769|ref|ZP_01054348.1| 30S ribosomal protein S3 [Roseobacter sp. MED193]
 gi|85826643|gb|EAQ46839.1| 30S ribosomal protein S3 [Roseobacter sp. MED193]
          Length = 236

 Score =  265 bits (676), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 126/221 (57%), Positives = 169/221 (76%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NP+  RL +N TW+SRW+A   ++G LL ED+K+R++++   KQAG+A+++IER 
Sbjct: 1   MGHKVNPVGMRLQINRTWDSRWYADTKDFGDLLLEDIKLRDFIKDECKQAGIARVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKKL++MT+SE+HL++ EV KPE++A L+ +SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIEVLRKKLASMTDSELHLNIVEVRKPELDAQLVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQSAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY    A T YG  GIK ++  + E+ + D   P A  R
Sbjct: 181 DIDYAHNEAMTPYGIIGIKTWI-FKGEIMEHD---PQARDR 217


>gi|126724869|ref|ZP_01740712.1| 30S ribosomal protein S3 [Rhodobacterales bacterium HTCC2150]
 gi|126706033|gb|EBA05123.1| 30S ribosomal protein S3 [Rhodobacterales bacterium HTCC2150]
          Length = 235

 Score =  264 bits (674), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 128/221 (57%), Positives = 170/221 (76%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RL VN TW+SRW+A   ++  LL EDL +R+++    KQAG+++++IER 
Sbjct: 1   MGNKVNPIGMRLQVNRTWDSRWYADSKDFSTLLLEDLAMRKFIGEECKQAGISRVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKKL++MT+SE+HL++ EV KPE++A L+A++I
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIEGLRKKLADMTDSELHLNIVEVRKPEMDAPLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY    A TAYG  GIKV++  + E+ + D   PAA  R
Sbjct: 181 DIDYSHKEALTAYGIIGIKVWI-FKGEIMEHD---PAARDR 217


>gi|301630258|ref|XP_002944239.1| PREDICTED: 30S ribosomal protein S3-like [Xenopus (Silurana)
           tropicalis]
          Length = 291

 Score =  263 bits (673), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/219 (56%), Positives = 166/219 (75%), Gaps = 2/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A   ++  +L ED+K+RE+L+  LK A V++ILIER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYASNRDFAGMLAEDIKVREFLKAKLKNAAVSRILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YSARPG++IGKKG DIE ++K+L+      + +++ EV KPEI+A LIA SI
Sbjct: 61  AKNARITIYSARPGVVIGKKGEDIENLKKELATRLGVPVAVNIEEVRKPEIDAKLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDYGT+ A+T YG  G+KV+V   D +  +D  +PAAE
Sbjct: 181 DIDYGTSEAKTTYGVIGVKVWVYKGDTLGRND--LPAAE 217


>gi|237653990|ref|YP_002890304.1| 30S ribosomal protein S3 [Thauera sp. MZ1T]
 gi|237625237|gb|ACR01927.1| ribosomal protein S3 [Thauera sp. MZ1T]
          Length = 256

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 119/202 (58%), Positives = 157/202 (77%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W SRWFA   +Y  +LHEDLK+R+YL+  L  A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVTRDWGSRWFANSKDYAGMLHEDLKVRDYLKKRLAHASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN R+ +YSARPG++IGKKG DIE +++ L  +    +H+++ EV KPE++A LIA SI
Sbjct: 61  AKNARVTLYSARPGVVIGKKGEDIEALKRDLQKIVGVPVHVNIEEVRKPELDAKLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNGAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
           +IDYG + A+T YG  GIKV+V
Sbjct: 181 NIDYGVSEAKTTYGVIGIKVWV 202


>gi|241765223|ref|ZP_04763206.1| ribosomal protein S3 [Acidovorax delafieldii 2AN]
 gi|241365103|gb|EER59982.1| ribosomal protein S3 [Acidovorax delafieldii 2AN]
          Length = 293

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/219 (56%), Positives = 166/219 (75%), Gaps = 2/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A   ++  +L ED+K+REYL+  LK A V++ILIER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYASNRDFAGMLAEDIKVREYLKAKLKNAAVSRILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YSARPG++IGKKG DIE ++K+L++     + +++ EV KPEI+A LIA SI
Sbjct: 61  AKNARITIYSARPGVVIGKKGEDIENLKKELASRLGVPVAVNIEEVRKPEIDAKLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDYGT+ A+T YG  G+KV+V   D +  +D  +PA E
Sbjct: 181 DIDYGTSEAKTTYGVIGVKVWVYKGDTLGRND--LPAVE 217


>gi|294085964|ref|YP_003552724.1| 30S ribosomal protein S3 [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665539|gb|ADE40640.1| ribosomal protein S3 [Candidatus Puniceispirillum marinum IMCC1322]
          Length = 231

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 131/227 (57%), Positives = 168/227 (74%), Gaps = 4/227 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+ PI  R+G+N TW+SRW+A G  YG LLHED+K+REYL   LKQA +++++IER 
Sbjct: 1   MGQKVKPIGLRVGINRTWDSRWYA-GRNYGTLLHEDIKLREYLMERLKQAAISRVVIERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+ +++ RPGLIIGKKG DIEK+R  LS     E+ L++ EV KPEI+A L+A++I
Sbjct: 60  AGRARVTIHAGRPGLIIGKKGQDIEKLRLDLSKRIGGEVSLNIVEVRKPEIDAKLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA GV++  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 120 AQQLERRVGFRRAMKRAVQSAMRLGALGVRINCAGRLGGAEIARTEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            +DYG A A T YG+CGIKV+V  + EV   D    A + R+ E+ +
Sbjct: 180 EVDYGEATAFTTYGACGIKVWV-FKGEVMAHDPM--AQDKRLAEQQA 223


>gi|121592718|ref|YP_984614.1| 30S ribosomal protein S3 [Acidovorax sp. JS42]
 gi|152060839|sp|A1W2R3|RS3_ACISJ RecName: Full=30S ribosomal protein S3
 gi|120604798|gb|ABM40538.1| SSU ribosomal protein S3P [Acidovorax sp. JS42]
          Length = 288

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/219 (56%), Positives = 166/219 (75%), Gaps = 2/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A   ++  +L ED+K+REYL+  LK A V++ILIER 
Sbjct: 1   MGQKIHPTGFRLSVSRNWASRWYASNRDFAGMLAEDIKVREYLKAKLKNAAVSRILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++SARPG++IGKKG DIE ++K+L+      + +++ EV KPEI+A LIA SI
Sbjct: 61  AKNARITIFSARPGVVIGKKGEDIENLKKELATRLGVPVAVNIEEVRKPEIDAKLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDYGT+ A+T YG  G+KV+V   D +  +D  +PAAE
Sbjct: 181 DIDYGTSEAKTTYGVIGVKVWVYKGDTLGRND--LPAAE 217


>gi|91774641|ref|YP_544397.1| 30S ribosomal protein S3 [Methylobacillus flagellatus KT]
 gi|123078974|sp|Q1H4N1|RS3_METFK RecName: Full=30S ribosomal protein S3
 gi|91708628|gb|ABE48556.1| SSU ribosomal protein S3P [Methylobacillus flagellatus KT]
          Length = 236

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 122/202 (60%), Positives = 157/202 (77%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W+SRW+A  + + A+L  D+K+RE+L+  L  A V+KI+IER 
Sbjct: 1   MGQKIHPFGFRLSVQKNWSSRWYANSNNFPAMLSSDIKVREFLKKKLAHAAVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN +I +YSARPG++IGKKG DIE +R  L  +    +HL++ EV KPEI+ATLIA+SI
Sbjct: 61  AKNAKITIYSARPGIVIGKKGEDIESLRSGLQGLMGVPVHLNIEEVRKPEIDATLIAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV+FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A+T YG  GIKV+V
Sbjct: 181 DIDYGVAEAKTTYGIIGIKVWV 202


>gi|222109499|ref|YP_002551763.1| 30S ribosomal protein s3 [Acidovorax ebreus TPSY]
 gi|221728943|gb|ACM31763.1| ribosomal protein S3 [Acidovorax ebreus TPSY]
          Length = 288

 Score =  263 bits (672), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/219 (56%), Positives = 166/219 (75%), Gaps = 2/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A   ++  +L ED+K+REYL+  LK A V++ILIER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYASNRDFAGMLAEDIKVREYLKAKLKNAAVSRILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++SARPG++IGKKG DIE ++K+L+      + +++ EV KPEI+A LIA SI
Sbjct: 61  AKNARITIFSARPGVVIGKKGEDIENLKKELATRLGVPVAVNIEEVRKPEIDAKLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDYGT+ A+T YG  G+KV+V   D +  +D  +PAAE
Sbjct: 181 DIDYGTSEAKTTYGVIGVKVWVYKGDTLGRND--LPAAE 217


>gi|163745546|ref|ZP_02152906.1| 30S ribosomal protein S3 [Oceanibulbus indolifex HEL-45]
 gi|161382364|gb|EDQ06773.1| 30S ribosomal protein S3 [Oceanibulbus indolifex HEL-45]
          Length = 235

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 128/221 (57%), Positives = 167/221 (75%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RL VN TW+SRW+A   +YG LL EDL IR++++    QAGVA+++IER 
Sbjct: 1   MGNKVNPIGMRLQVNRTWDSRWYADTKDYGDLLLEDLAIRDFIKKECHQAGVARVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +R+K++ MT SE+HL++ E+ KPE++A L+ +SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIETLRQKIAKMTKSELHLNIVEIRKPELDAHLVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAMRMGALGIRVNLAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY    A TAYG  GIK ++  + E+ + D   PAA  R
Sbjct: 181 DIDYAHVEAMTAYGIIGIKTWI-FKGEIMEHD---PAARDR 217


>gi|85709051|ref|ZP_01040117.1| 30S ribosomal protein S3 [Erythrobacter sp. NAP1]
 gi|85690585|gb|EAQ30588.1| 30S ribosomal protein S3 [Erythrobacter sp. NAP1]
          Length = 231

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 127/223 (56%), Positives = 167/223 (74%), Gaps = 4/223 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK NPI  RL +N TW+SRW+A G +Y  LL ED+K+R+Y+   L QA ++K++IER 
Sbjct: 1   MGQKSNPIGLRLQINRTWDSRWYAEGRDYAGLLAEDIKMRKYILESLPQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K CR+ +Y+ARPG+IIGKKG DIEK+R KLS MT+SE+ L++ E+ KPEI+A L+AQ +
Sbjct: 61  AKLCRVSIYAARPGVIIGKKGADIEKLRAKLSTMTSSEVKLNIVEIRKPEIDAKLVAQGV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QL RRV FRRAMKRAVQSA+R GA+G+K++  GRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 ADQLVRRVAFRRAMKRAVQSALRLGAEGIKIVCGGRLGGAEIARVEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVV 223
           +IDY    A TAYG  GIKV++  + E+   D   P A+ R++
Sbjct: 181 NIDYAETEALTAYGIIGIKVWI-FKGEILAHD---PTAQDRLM 219


>gi|296116726|ref|ZP_06835336.1| 30S ribosomal protein S3 [Gluconacetobacter hansenii ATCC 23769]
 gi|295976938|gb|EFG83706.1| 30S ribosomal protein S3 [Gluconacetobacter hansenii ATCC 23769]
          Length = 225

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/221 (56%), Positives = 168/221 (76%), Gaps = 5/221 (2%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RLG+N TW+SRW+A  ++Y  LLH+DLK+R YL+  L  AGV++++IER 
Sbjct: 1   MGHKVNPIGLRLGINRTWDSRWYA-DADYARLLHDDLKLRSYLRRKLSGAGVSRVVIERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +Y+ARPG++IGKKG DI+ +RK L+ M  +++ L++ E+ KPEI+ATL+A +I
Sbjct: 60  AKKPRVTIYAARPGVVIGKKGQDIDVLRKDLTRMAKTDVALNIVEIRKPEIDATLVADNI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 120 AQQLERRVAFRRAMKRAVQSAMRLGAQGIRINCSGRLGGAEIARVEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDYG A A+T YG+CG+KV++  + E+   D   P A+ R
Sbjct: 180 DIDYGVATAKTTYGTCGVKVWI-FKGEILAHD---PLAQDR 216


>gi|85374459|ref|YP_458521.1| 30S ribosomal protein S3 [Erythrobacter litoralis HTCC2594]
 gi|123293711|sp|Q2N9B7|RS3_ERYLH RecName: Full=30S ribosomal protein S3
 gi|84787542|gb|ABC63724.1| ribosomal protein S3 [Erythrobacter litoralis HTCC2594]
          Length = 231

 Score =  262 bits (670), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 130/223 (58%), Positives = 167/223 (74%), Gaps = 4/223 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK NPI  RL +N TW+SRW+A G+ Y  LL ED++IR+Y+     QA ++K++IER 
Sbjct: 1   MGQKSNPIGLRLQINRTWDSRWYAEGNAYAKLLAEDIEIRKYILETAAQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K CRI +Y+ARPG+IIGKKG DIEK+R+KLS MT SE+ L++ E+ KPEI+A L+AQ I
Sbjct: 61  AKLCRISIYAARPGVIIGKKGADIEKLRQKLSTMTESEVKLNIVEIRKPEIDAKLVAQGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QL RRV FRRAMKRA+QSAMR GA+G+K++  GRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 ADQLIRRVAFRRAMKRAMQSAMRLGAEGIKIVCGGRLGGAEIARVEQYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVV 223
           +IDY  A A TAYG  GIKV+V  + E+   D   P A+ R++
Sbjct: 181 NIDYAEAEALTAYGIIGIKVWV-FKGEILGHD---PTAQDRLM 219


>gi|330993852|ref|ZP_08317784.1| 30S ribosomal protein S3 [Gluconacetobacter sp. SXCC-1]
 gi|329759120|gb|EGG75632.1| 30S ribosomal protein S3 [Gluconacetobacter sp. SXCC-1]
          Length = 225

 Score =  262 bits (670), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/221 (56%), Positives = 169/221 (76%), Gaps = 5/221 (2%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RLG+N TW+SRW+A  ++Y  LLH+DLK+R YL+  L  AGV++++IER 
Sbjct: 1   MGHKVNPIGLRLGINRTWDSRWYA-DADYARLLHDDLKLRAYLRRKLSGAGVSRVVIERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +Y+ARPG++IGKKG DI+ +RK L+ M  +++ L++ E+ KPEI+ATL+A++I
Sbjct: 60  AKKPRVTIYAARPGVVIGKKGQDIDVLRKDLARMAKTDVALNIVEIRKPEIDATLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 120 AQQLERRVAFRRAMKRAVQSAMRLGAQGIRINCSGRLGGAEIARIEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDYG A A+T YG+CG+KV++  + E+   D   P A+ R
Sbjct: 180 DIDYGVATAKTTYGTCGVKVWI-FKGEILAHD---PLAQDR 216


>gi|89053082|ref|YP_508533.1| 30S ribosomal protein S3 [Jannaschia sp. CCS1]
 gi|123401403|sp|Q28UV4|RS3_JANSC RecName: Full=30S ribosomal protein S3
 gi|88862631|gb|ABD53508.1| SSU ribosomal protein S3P [Jannaschia sp. CCS1]
          Length = 247

 Score =  262 bits (670), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/233 (56%), Positives = 174/233 (74%), Gaps = 16/233 (6%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQC----HLKQ------- 49
           MG K+NPI  RL VN TW+SRW+A   +YG LL ED+KIR+Y++     H+ +       
Sbjct: 1   MGHKVNPIGMRLQVNRTWDSRWYADTKDYGDLLLEDIKIRDYIKKGWWEHVAKRDKRPAG 60

Query: 50  -AGVAKILIERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPK 108
            AG++KI+IER HK CR+ ++SARPG+IIGKKG DIE +RKKL+ +T+SE+HL++ E+ K
Sbjct: 61  DAGISKIIIERPHKKCRVTIHSARPGVIIGKKGADIEGLRKKLAEITDSELHLNIVEIRK 120

Query: 109 PEINATLIAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECY 168
           PE++A L+A+SIAQQLERRV FRRAMKRAVQ+AMR G+ G++V  +GRL GAE++RTE Y
Sbjct: 121 PELDARLVAESIAQQLERRVSFRRAMKRAVQNAMRMGSLGIRVNVAGRLGGAEIARTEWY 180

Query: 169 LEGRVPLQTLRAHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            EGRVPL TLRA IDY  A AETAYG  GIK ++  + E+ + D   P+A  R
Sbjct: 181 REGRVPLHTLRADIDYAHAEAETAYGIIGIKTWI-FKGEIMEHD---PSAHDR 229


>gi|326315230|ref|YP_004232902.1| 30S ribosomal protein S3 [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372066|gb|ADX44335.1| ribosomal protein S3 [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 293

 Score =  262 bits (669), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 123/219 (56%), Positives = 166/219 (75%), Gaps = 2/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A   ++  +L ED+K+REYL+  LK A V++ILIER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYASNRDFAGMLAEDIKVREYLKAKLKNAAVSRILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YSARPG++IGKKG DIE ++K+L++     + +++ EV KPEI+A LIA SI
Sbjct: 61  AKNARITIYSARPGVVIGKKGEDIENLKKELASRLGVPVAVNIEEVRKPEIDAKLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDYGT+ A+T YG  G+KV+V   D +  +D  +P AE
Sbjct: 181 DIDYGTSEAKTTYGVIGVKVWVYKGDTLGRND--LPVAE 217


>gi|37912986|gb|AAR05315.1| ribosomal protein S3 [uncultured marine alpha proteobacterium
           HOT2C01]
          Length = 223

 Score =  262 bits (669), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 123/202 (60%), Positives = 154/202 (76%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RL +N  W SRW+A   E+G+ L EDLKIR YL+  LK   VAKI IER 
Sbjct: 1   MGQKVNPIGLRLILNKKWQSRWYAGKKEFGSFLQEDLKIRAYLEKKLKNCAVAKIQIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  ++ +YSARPGLIIGKKG+DIEK++KK+S  T+ E+ +++ E+ KPE+ A LIA  I
Sbjct: 61  AKKAQVTIYSARPGLIIGKKGSDIEKLKKKISEFTSDEVSINLVEIRKPEVEAQLIADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLERRV FRRAMKR+VQSAMR GADG++V   GRL G E++RTE Y EGRVPL T RA
Sbjct: 121 AEQLERRVSFRRAMKRSVQSAMRLGADGIRVNCGGRLGGTEIARTEWYREGRVPLHTFRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
           ++DY  A A+T YGSCGIKV++
Sbjct: 181 NVDYAVATAQTTYGSCGIKVWI 202


>gi|84515640|ref|ZP_01003001.1| 30S ribosomal protein S3 [Loktanella vestfoldensis SKA53]
 gi|84510082|gb|EAQ06538.1| 30S ribosomal protein S3 [Loktanella vestfoldensis SKA53]
          Length = 238

 Score =  262 bits (669), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 126/212 (59%), Positives = 164/212 (77%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RL VN TW+SRWFA   EYG LL EDLKI+ +++    Q+GV++++IER 
Sbjct: 1   MGNKVNPIGMRLQVNRTWDSRWFANTREYGDLLLEDLKIKAFIRKECAQSGVSRVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +R+KL+N+T SE+HL++ EV KPE++A L+A+SI
Sbjct: 61  HKKCRVTIHAARPGVIIGKKGADIEGLRQKLANLTKSELHLNIVEVRKPELDAALVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERRV FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 GQQLERRVSFRRAMKRAVQNAMRMGALGIRVNLAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDY    A T YG  GIKV++  + E+ + D
Sbjct: 181 DIDYALFEAMTPYGIIGIKVFI-YKGEIMEHD 211


>gi|330430095|gb|AEC21429.1| 30S ribosomal protein S3 [Pusillimonas sp. T7-7]
          Length = 267

 Score =  261 bits (668), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 120/212 (56%), Positives = 162/212 (76%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+PI FRL VN  W+SRW+A    +G +L ED+++REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPIGFRLAVNRNWSSRWYADDKAFGGMLAEDIRVREYLKKKLKSASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI VYSARPG++IGK+G DIE ++  L  +    +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITVYSARPGVVIGKRGEDIENLKADLQRLMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
           +IDYGT+ A+T YG  GIKV+V   D + + +
Sbjct: 181 NIDYGTSEAQTTYGIIGIKVWVYKGDMLPNGE 212


>gi|83854971|ref|ZP_00948501.1| 30S ribosomal protein S3 [Sulfitobacter sp. NAS-14.1]
 gi|83941493|ref|ZP_00953955.1| 30S ribosomal protein S3 [Sulfitobacter sp. EE-36]
 gi|83842814|gb|EAP81981.1| 30S ribosomal protein S3 [Sulfitobacter sp. NAS-14.1]
 gi|83847313|gb|EAP85188.1| 30S ribosomal protein S3 [Sulfitobacter sp. EE-36]
          Length = 235

 Score =  261 bits (668), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 126/221 (57%), Positives = 167/221 (75%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RL VN TW+SRW+A   +YG LL EDL IR++++    QAG+A+++IER 
Sbjct: 1   MGNKVNPIGMRLQVNRTWDSRWYADTKDYGDLLLEDLAIRDFIKKECAQAGIARVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +R+K++ +T S++HL++ EV KPE++A L+ +SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIEGLRQKIAKITKSDLHLNIVEVRKPELDAALVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVSFRRAMKRAVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY    A TAYG  GIK ++  + E+ + D   PAA  R
Sbjct: 181 DIDYAHVEASTAYGIIGIKTWI-FKGEIMEHD---PAARDR 217


>gi|162149168|ref|YP_001603629.1| 30S ribosomal protein S3 [Gluconacetobacter diazotrophicus PAl 5]
 gi|209545088|ref|YP_002277317.1| 30S ribosomal protein S3 [Gluconacetobacter diazotrophicus PAl 5]
 gi|189045011|sp|A9H3P5|RS3_GLUDA RecName: Full=30S ribosomal protein S3
 gi|161787745|emb|CAP57341.1| 30S ribosomal protein S3 [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532765|gb|ACI52702.1| ribosomal protein S3 [Gluconacetobacter diazotrophicus PAl 5]
          Length = 225

 Score =  261 bits (668), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 124/221 (56%), Positives = 169/221 (76%), Gaps = 5/221 (2%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RLG+N TW+SRW+A G++Y  LLH+DLK+R +L+  L  AGV++++IER 
Sbjct: 1   MGHKVNPIGLRLGINRTWDSRWYA-GADYSRLLHDDLKLRAHLRRKLSGAGVSRVVIERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +Y+ARPG++IGKKG DI+ +RK L+ M  +++ L++ E+ KPEI+ATL+A++I
Sbjct: 60  AKKPRVTIYAARPGVVIGKKGQDIDVLRKDLTRMAKTDVALNIVEIRKPEIDATLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKRAVQSAMR GA G+++   GRL GAE++R E Y EGRVPL TLRA
Sbjct: 120 AQQLERRVAFRRAMKRAVQSAMRLGAQGIRINCGGRLGGAEIARVEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDYG A A+T YG+CG+KV++  + E+   D   P A+ R
Sbjct: 180 DIDYGVATAKTTYGTCGVKVWI-FKGEILAHD---PLAQDR 216


>gi|120609047|ref|YP_968725.1| 30S ribosomal protein S3 [Acidovorax citrulli AAC00-1]
 gi|152060836|sp|A1TJ13|RS3_ACIAC RecName: Full=30S ribosomal protein S3
 gi|120587511|gb|ABM30951.1| SSU ribosomal protein S3P [Acidovorax citrulli AAC00-1]
          Length = 293

 Score =  261 bits (667), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 124/219 (56%), Positives = 165/219 (75%), Gaps = 2/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A   ++  +L ED+K+REYL+  LK A V++ILIER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNRDFAGMLAEDIKVREYLKAKLKNAAVSRILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YSARPG++IGKKG DIE ++K+L++     + +++ EV KPEI+A LIA SI
Sbjct: 61  AKNARITIYSARPGVVIGKKGEDIENLKKELASRLGVPVAVNIEEVRKPEIDAKLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDYGT+ A T YG  G+KV+V   D +  +D  +PA E
Sbjct: 181 DIDYGTSEAFTTYGVIGLKVWVYKGDTLGRND--LPAVE 217


>gi|56477600|ref|YP_159189.1| 30S ribosomal protein S3 [Aromatoleum aromaticum EbN1]
 gi|81677438|sp|Q5P326|RS3_AZOSE RecName: Full=30S ribosomal protein S3
 gi|56313643|emb|CAI08288.1| 30S ribosomal protein S3 [Aromatoleum aromaticum EbN1]
          Length = 278

 Score =  261 bits (667), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 158/202 (78%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   WNSRWFA   +Y  +LHEDLK+R++L+  L  A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVTRDWNSRWFASSGDYSRMLHEDLKVRDFLKKRLAHASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++SARPG++IGKKG DIE ++++L  +    +H+++ EV KPE++A LIA SI
Sbjct: 61  AKNARITLFSARPGVVIGKKGEDIELLKRELQKIMGVPVHVNIEEVRKPEVDAKLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+R++FRRAMKRA+Q+AMR GA G+K++++GRLNGAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG + A+T YG  GIKV+V
Sbjct: 181 DIDYGVSEAKTTYGIIGIKVWV 202


>gi|119899700|ref|YP_934913.1| 30S ribosomal protein S3 [Azoarcus sp. BH72]
 gi|152060845|sp|A1KB21|RS3_AZOSB RecName: Full=30S ribosomal protein S3
 gi|119672113|emb|CAL96027.1| 30S ribosomal protein S3 [Azoarcus sp. BH72]
          Length = 260

 Score =  261 bits (667), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 157/202 (77%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W SRWFA   ++  +LHEDLK+R+YL+  L  A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVTRDWGSRWFASSRDFSKMLHEDLKVRDYLKKRLAHASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN R+ ++SARPG++IGKKG DIE +++ L  +    +H+++ EV KPEI+A LIA SI
Sbjct: 61  AKNARVTLFSARPGVVIGKKGEDIEALKRDLQKIVGVPVHVNIEEVRKPEIDAKLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNGAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
           +IDYG + A+T YG  GIKV+V
Sbjct: 181 NIDYGVSEAQTTYGVIGIKVWV 202


>gi|254438563|ref|ZP_05052057.1| ribosomal protein S3 [Octadecabacter antarcticus 307]
 gi|254451173|ref|ZP_05064610.1| ribosomal protein S3 [Octadecabacter antarcticus 238]
 gi|198254009|gb|EDY78323.1| ribosomal protein S3 [Octadecabacter antarcticus 307]
 gi|198265579|gb|EDY89849.1| ribosomal protein S3 [Octadecabacter antarcticus 238]
          Length = 238

 Score =  261 bits (666), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 126/225 (56%), Positives = 171/225 (76%), Gaps = 4/225 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RL VN TW+SRW+A   +YG LL EDLKI+ +++    QAG+++++IER 
Sbjct: 1   MGNKVNPIGMRLQVNRTWDSRWYADTKDYGNLLLEDLKIKAFIKKECAQAGISRVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKKL+ +T SE+HL++ EV KPE++A L+ +SI
Sbjct: 61  HKKCRVTIHTARPGVIIGKKGADIETLRKKLAALTASELHLNILEVRKPELDAQLVGESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           +QQLERRV FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 SQQLERRVSFRRAMKRAVQNAMRMGALGIRVNLAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDY    A+TAYG  GIK ++  + E+ + D   P+A  R +++
Sbjct: 181 DIDYAHVEAQTAYGIIGIKTWI-FKGEIMEHD---PSAHDRKLQE 221


>gi|71905967|ref|YP_283554.1| 30S ribosomal protein S3 [Dechloromonas aromatica RCB]
 gi|91207650|sp|Q47J97|RS3_DECAR RecName: Full=30S ribosomal protein S3
 gi|71845588|gb|AAZ45084.1| SSU ribosomal protein S3P [Dechloromonas aromatica RCB]
          Length = 261

 Score =  261 bits (666), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 123/222 (55%), Positives = 165/222 (74%), Gaps = 3/222 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W+SRW+A   ++  +L+ED+K+REYL+  L  A V ++LIER 
Sbjct: 1   MGQKIHPTGFRLAVTKNWSSRWYANSKDFPGMLNEDIKVREYLKRKLAHASVGRVLIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN R+ VYSARPG++IGKKG DIE++R  L  +    +H+S+ E+ KPEI+A LIA SI
Sbjct: 61  AKNARVTVYSARPGVVIGKKGEDIEQLRTDLQRIMGVPVHVSIEEIRKPEIDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+R++FRRAMKRA+Q+AMR GA G+KV+++GRLNGAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKVMSAGRLNGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI---PAAE 219
            IDY T+ A T YG  GIKV+V   D +  ++  +   PAA+
Sbjct: 181 DIDYATSEALTTYGIIGIKVWVYKGDMLDRNEQPVAEEPAAD 222


>gi|319778737|ref|YP_004129650.1| SSU ribosomal protein S3p (S3e) [Taylorella equigenitalis MCE9]
 gi|317108761|gb|ADU91507.1| SSU ribosomal protein S3p (S3e) [Taylorella equigenitalis MCE9]
          Length = 296

 Score =  260 bits (665), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 119/215 (55%), Positives = 160/215 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRL V   WNSRWFA   ++G +L +DL++REYL+  LKQA V ++LIER 
Sbjct: 1   MGQKVHPTGFRLAVTRNWNSRWFAEDKDFGTMLAQDLRVREYLKRKLKQASVGRVLIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI V++ARPG+IIGK G DI+ ++  L  +    +H+++ E+ KPE++A LIA SI
Sbjct: 61  EKNARITVFTARPGVIIGKGGDDIDALKSDLQRIMGVPVHINIEEIRKPEVDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+R++FRRAMKRA+Q+AMR GA G+KV ASGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLEKRIMFRRAMKRAIQNAMRAGAQGIKVAASGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            +DY T+ A T YG  GIKV+V   D + + ++ +
Sbjct: 181 MVDYATSEALTTYGLLGIKVWVYKGDLLPNGEAPV 215


>gi|319761144|ref|YP_004125081.1| ribosomal protein s3 [Alicycliphilus denitrificans BC]
 gi|330823002|ref|YP_004386305.1| 30S ribosomal protein S3 [Alicycliphilus denitrificans K601]
 gi|317115705|gb|ADU98193.1| ribosomal protein S3 [Alicycliphilus denitrificans BC]
 gi|329308374|gb|AEB82789.1| ribosomal protein S3 [Alicycliphilus denitrificans K601]
          Length = 290

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 123/219 (56%), Positives = 163/219 (74%), Gaps = 2/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A   ++  +L ED+K+RE+L+  LK A V++ILIER 
Sbjct: 1   MGQKIHPTGFRLSVSRNWASRWYASNRDFAGMLAEDIKVREFLKAKLKNAAVSRILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YSARPG++IGKKG DIE ++K+L+      + +++ EV KPEI+A LIA SI
Sbjct: 61  AKNARITIYSARPGVVIGKKGEDIENLKKELATRLGVPVAVNIEEVRKPEIDAKLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R+ FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIQFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDYGT+ A+T YG  G+KV+V   D +   D  +P AE
Sbjct: 181 DIDYGTSEAKTTYGVIGVKVWVYKGDTLGRGD--LPVAE 217


>gi|126736606|ref|ZP_01752346.1| ribosomal protein S3 [Roseobacter sp. CCS2]
 gi|126713919|gb|EBA10790.1| ribosomal protein S3 [Roseobacter sp. CCS2]
          Length = 233

 Score =  259 bits (661), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 125/221 (56%), Positives = 169/221 (76%), Gaps = 4/221 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RL VN TW+SRW+A   +YG LL EDL+I+++++    Q+GV++++IER 
Sbjct: 1   MGNKVNPIGMRLQVNRTWDSRWYADTKDYGDLLLEDLRIKDFIKKECAQSGVSRVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           HK CR+ +++ARPG+IIGKKG DIE +RKKL+ +T+SE+HL++ EV KPE++A L+A+SI
Sbjct: 61  HKKCRVTIHAARPGVIIGKKGADIEGLRKKLAALTDSELHLNIVEVRKPELDAALVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERRV FRRAMKR+VQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 GQQLERRVSFRRAMKRSVQNAMRMGALGIRVNLAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY    A T YG  GIKV++  + E+ + D   P+A  R
Sbjct: 181 DIDYALYEAMTPYGIIGIKVFI-YKGEIMEHD---PSAHDR 217


>gi|149184317|ref|ZP_01862635.1| 30S ribosomal protein S3 [Erythrobacter sp. SD-21]
 gi|148831637|gb|EDL50070.1| 30S ribosomal protein S3 [Erythrobacter sp. SD-21]
          Length = 231

 Score =  259 bits (661), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 128/223 (57%), Positives = 165/223 (73%), Gaps = 4/223 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K NPI  RL +N TW+SRW+A G +Y  LL ED++IR+Y+     QA ++K++IER 
Sbjct: 1   MGHKSNPIGLRLQINRTWDSRWYAEGRDYAKLLAEDIEIRKYILEKAAQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K CRI +Y+ARPG+IIGKKG DIEK+R KLS MT SE+ L++ E+ KPE++A L+AQ I
Sbjct: 61  AKLCRISIYAARPGVIIGKKGADIEKLRAKLSQMTESEVKLNIVEIRKPEVDAKLVAQGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QL RRV FRRAMKRA+QSAMR GA+G+K++  GRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 ADQLIRRVAFRRAMKRAMQSAMRLGAEGIKIMCGGRLGGAEIARVEQYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVV 223
           +IDY  A A TAYG  GIKV+V  + E+   D   P A+ R++
Sbjct: 181 NIDYAEAEALTAYGIIGIKVWV-FKGEILGHD---PTAQDRLM 219


>gi|121603126|ref|YP_980455.1| 30S ribosomal protein S3 [Polaromonas naphthalenivorans CJ2]
 gi|152060890|sp|A1VIQ6|RS3_POLNA RecName: Full=30S ribosomal protein S3
 gi|120592095|gb|ABM35534.1| SSU ribosomal protein S3P [Polaromonas naphthalenivorans CJ2]
          Length = 295

 Score =  259 bits (661), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 120/214 (56%), Positives = 162/214 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRL ++  W+SRW+A   ++  +L ED+K+REYL+  LK A V+++LIER 
Sbjct: 1   MGQKINPTGFRLSISRNWSSRWYANNRDFAGMLAEDIKVREYLKKKLKNAAVSRVLIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++SARPG++IGKKG DIE ++K+LS      + +++ EV KPEI+A LIA SI
Sbjct: 61  AKNARITIFSARPGVVIGKKGEDIEALKKELSRQLGVPVAVNIEEVRKPEIDAKLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++R E Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGALGIKIMSSGRLNGIEIARCEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDST 214
            IDYGT+ A+T YG  G+KV+V   D +  +D T
Sbjct: 181 DIDYGTSEAQTTYGIIGVKVWVYKGDTLGRNDGT 214


>gi|87199276|ref|YP_496533.1| 30S ribosomal protein S3 [Novosphingobium aromaticivorans DSM
           12444]
 gi|123749869|sp|Q2G8X4|RS3_NOVAD RecName: Full=30S ribosomal protein S3
 gi|87134957|gb|ABD25699.1| SSU ribosomal protein S3P [Novosphingobium aromaticivorans DSM
           12444]
          Length = 231

 Score =  258 bits (660), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 125/223 (56%), Positives = 165/223 (73%), Gaps = 4/223 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K NPI  RL +N TW+SRW+A G  Y  +L EDLKIR+Y+  +L QA ++K++IER 
Sbjct: 1   MGHKSNPIGLRLQINRTWDSRWYAEGRNYAQMLEEDLKIRKYIVENLPQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K CR+ +Y+ARPG+IIGKKG DIEK+R KL+ MT S++ L++ E+ KPEI++ L+AQ +
Sbjct: 61  AKLCRVSIYAARPGVIIGKKGADIEKLRSKLATMTGSDVKLNIVEIRKPEIDSKLVAQGV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QL RRV FRRAMKRAVQSA+R GA+G+K+   GRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 ADQLVRRVAFRRAMKRAVQSALRLGAEGIKITCGGRLGGAEIARVEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVV 223
           +IDY  A A TAYG  GIKV++  + E+   D   P A+ R++
Sbjct: 181 NIDYAEAEAHTAYGVIGIKVWI-FKGEILGHD---PMAQDRLM 219


>gi|325981811|ref|YP_004294213.1| 30S ribosomal protein S3 [Nitrosomonas sp. AL212]
 gi|325531330|gb|ADZ26051.1| ribosomal protein S3 [Nitrosomonas sp. AL212]
          Length = 272

 Score =  258 bits (660), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 117/202 (57%), Positives = 156/202 (77%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRL V+  W SRW+A  S + ++L+ED+K+R +L   LK A V KILIER 
Sbjct: 1   MGQKINPTGFRLSVHKNWLSRWYANSSNFASMLNEDIKVRNFLANRLKNASVGKILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++S+RPG++IGKKG DIE +R +L       +H+++ E+ KPEI+A LIA +I
Sbjct: 61  SKNARITIFSSRPGVVIGKKGEDIEVLRSELQKRMGVPVHVNIEEIRKPEIDAQLIADNI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            +DYGT+ A+T YG  GIKV++
Sbjct: 181 DLDYGTSEAKTTYGIIGIKVWI 202


>gi|254468886|ref|ZP_05082292.1| ribosomal protein S3 [beta proteobacterium KB13]
 gi|207087696|gb|EDZ64979.1| ribosomal protein S3 [beta proteobacterium KB13]
          Length = 282

 Score =  258 bits (660), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 122/225 (54%), Positives = 159/225 (70%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI FRLGV   W+S+WF     +   L+ D+K+RE+L   L  A V+KI+IER 
Sbjct: 1   MGQKINPIGFRLGVQKNWSSKWFTSTKNFPVFLNNDIKVREFLNKKLANAAVSKIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN ++ + +ARPG++IGKKG DIE +R  L  +    + L++ EV KPEI+ATLIAQSI
Sbjct: 61  AKNAKVTIMTARPGIVIGKKGEDIENLRSDLQGLMGIPVQLNIEEVRKPEIDATLIAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVQFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDYG A A+T YG  GIKV++   +   D     P  +  V +K
Sbjct: 181 DIDYGVARAQTQYGIIGIKVWIYKGEVFQDDKVASPITKDVVGDK 225


>gi|239817867|ref|YP_002946777.1| 30S ribosomal protein S3 [Variovorax paradoxus S110]
 gi|239804444|gb|ACS21511.1| ribosomal protein S3 [Variovorax paradoxus S110]
          Length = 308

 Score =  258 bits (660), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 120/219 (54%), Positives = 164/219 (74%), Gaps = 2/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W+SRW+A   ++  +L ED+K+REYL+  LK A V++++IER 
Sbjct: 1   MGQKIHPTGFRLAVTRNWSSRWYASDRDFAGMLAEDIKVREYLKKKLKNASVSRVMIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YSARPG++IGKKG DIE ++++L       + +++ EV KPEI+A LIA SI
Sbjct: 61  AKNARITIYSARPGVVIGKKGEDIENLKRELGKQLGVPVAVNIEEVRKPEIDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDYGT+ A+T YG  G+KV+V   D +  +D  +PA E
Sbjct: 181 DIDYGTSEAKTTYGVIGVKVWVYKGDTLGRND--LPAVE 217


>gi|326388203|ref|ZP_08209806.1| 30S ribosomal protein S3 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326207369|gb|EGD58183.1| 30S ribosomal protein S3 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 231

 Score =  258 bits (659), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 127/223 (56%), Positives = 162/223 (72%), Gaps = 4/223 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K NPI  RL +N TW+SRWFA G  Y  LL EDL IR+Y+   L QA ++K++IER 
Sbjct: 1   MGHKTNPIGLRLQINRTWDSRWFAEGRSYAQLLKEDLTIRKYIVEKLPQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K CR+ +Y+ARPG+IIGKKG DIEK+R KLS +T S++ L++ E+ KPEI+A L+AQ I
Sbjct: 61  AKVCRVSIYAARPGVIIGKKGADIEKLRAKLSTLTASDVKLNIVEIRKPEIDAKLVAQGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QL RRV FRRAMKRAVQSA+R GA+G+K+   GRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 ADQLVRRVAFRRAMKRAVQSALRLGAEGIKITCGGRLGGAEIARVEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVV 223
           +IDY  A A TAYG  GIK ++  + E+   D   P A+ R++
Sbjct: 181 NIDYAEAEAHTAYGVIGIKTWI-FKGEILGHD---PLAQDRLM 219


>gi|91786173|ref|YP_547125.1| 30S ribosomal protein S3 [Polaromonas sp. JS666]
 gi|123165524|sp|Q12GW5|RS3_POLSJ RecName: Full=30S ribosomal protein S3
 gi|91695398|gb|ABE42227.1| SSU ribosomal protein S3P [Polaromonas sp. JS666]
          Length = 301

 Score =  258 bits (658), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 120/213 (56%), Positives = 160/213 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRL V+  W SRW+A   ++  +L ED+K+REYL+  LK A V+++LIER 
Sbjct: 1   MGQKINPTGFRLAVSRNWASRWYASNRDFAGMLAEDIKVREYLKAKLKNAAVSRVLIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++SARPG++IGKKG DIE ++K+LS      + +++ EV KPEI+A LIA SI
Sbjct: 61  AKNARITIFSARPGVVIGKKGEDIENLKKELSRQLGVPVAVNIEEVRKPEIDAKLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++R E Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGALGIKIMSSGRLNGIEIARCEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDS 213
            IDYGT+ A+T YG  G+KV+V   D +   +S
Sbjct: 181 DIDYGTSEAKTTYGVIGVKVWVYKGDTLGRGES 213


>gi|163859267|ref|YP_001633565.1| 30S ribosomal protein S3 [Bordetella petrii DSM 12804]
 gi|226697669|sp|A9IIZ1|RS3_BORPD RecName: Full=30S ribosomal protein S3
 gi|163262995|emb|CAP45298.1| 30S ribosomal protein S3 [Bordetella petrii]
          Length = 263

 Score =  258 bits (658), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 119/218 (54%), Positives = 163/218 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W+SRWFA    +G++L ED+++REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVTRNWSSRWFADDKAFGSMLAEDIRVREYLKKKLKSASVGRVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI VYSARPG++IGK+G DIE ++  L  +    +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITVYSARPGVVIGKRGEDIESLKADLQRLMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           +QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TL+A
Sbjct: 121 SQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLKA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAA 218
           +IDYGT+ A T YG  GIKV+V   D +++ +    AA
Sbjct: 181 NIDYGTSEAHTTYGVIGIKVWVYKGDMLANGELPPEAA 218


>gi|332041529|gb|EGI77889.1| 30S ribosomal protein S3 [Hylemonella gracilis ATCC 19624]
          Length = 296

 Score =  258 bits (658), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 118/212 (55%), Positives = 159/212 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRL V+  W SRW+A   ++  +L ED+K+REYL+  LK A V+++LIER 
Sbjct: 1   MGQKINPTGFRLAVSRNWASRWYASNRDFAGMLAEDIKVREYLKTKLKNASVSRVLIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++SARPG++IGKKG DIE +++ L       + +++ EV KPEI+A LIA SI
Sbjct: 61  AKNARITIFSARPGVVIGKKGEDIENLKRDLGKQLGVPVAVNIEEVRKPEIDAKLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYGT+ A+T YG  G+KV+V   D +  ++
Sbjct: 181 DIDYGTSEAKTTYGVIGVKVWVYKGDNLGRNE 212


>gi|152980649|ref|YP_001355095.1| small subunit ribosomal protein S3 [Janthinobacterium sp.
           Marseille]
 gi|189045013|sp|A6T3J8|RS3_JANMA RecName: Full=30S ribosomal protein S3
 gi|151280726|gb|ABR89136.1| small subunit ribosomal protein S3 [Janthinobacterium sp.
           Marseille]
          Length = 283

 Score =  257 bits (657), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 118/215 (54%), Positives = 160/215 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  S +  +L+EDLK+R YL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYAGNSNFATMLNEDLKVRAYLKTKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YS+RPG++IGKKG DIE ++  L+ M    +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITIYSSRPGVVIGKKGEDIEVLKSALTKMMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++R E Y EGRVPL TLRA
Sbjct: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARKEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDYG   AET YG  GIKV+V   D +++ ++ +
Sbjct: 181 DIDYGFGEAETTYGIIGIKVWVYKGDRLANGEAPV 215


>gi|121608249|ref|YP_996056.1| 30S ribosomal protein S3 [Verminephrobacter eiseniae EF01-2]
 gi|152060914|sp|A1WHD1|RS3_VEREI RecName: Full=30S ribosomal protein S3
 gi|121552889|gb|ABM57038.1| SSU ribosomal protein S3P [Verminephrobacter eiseniae EF01-2]
          Length = 294

 Score =  257 bits (657), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 123/219 (56%), Positives = 164/219 (74%), Gaps = 2/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A   ++  +L ED+K+REYL+  LK A V++ILIER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYADNRDFAGMLAEDIKVREYLKTKLKNAAVSRILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YSARPG++IGKKG DIE ++K+L+      + +++ EV KPEI+A LIA SI
Sbjct: 61  AKNARITIYSARPGVVIGKKGEDIESLKKELAVRLGVPVAVNIEEVRKPEIDAKLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++R E Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARCEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDYGT+ A+T YG  G+KV+V   D +  +D  +PA E
Sbjct: 181 DIDYGTSEAKTTYGVIGVKVWVYKGDTLGRND--LPAVE 217


>gi|317401543|gb|EFV82172.1| 30S ribosomal protein S3 [Achromobacter xylosoxidans C54]
          Length = 263

 Score =  257 bits (657), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 117/212 (55%), Positives = 161/212 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W+SRWFA    +G++L ED+++REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVTRNWSSRWFADDKAFGSMLAEDIRVREYLKKKLKSASVGRVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI VYSARPG++IGK+G DIE ++  L  +    +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITVYSARPGVVIGKRGEDIESLKADLQRLMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           +QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TL+A
Sbjct: 121 SQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLKA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
           +IDYGT+ A T YG  GIKV+V   D +++ +
Sbjct: 181 NIDYGTSEAHTTYGVIGIKVWVYKGDMLANGE 212


>gi|319944789|ref|ZP_08019053.1| 30S ribosomal protein S3 [Lautropia mirabilis ATCC 51599]
 gi|319742038|gb|EFV94461.1| 30S ribosomal protein S3 [Lautropia mirabilis ATCC 51599]
          Length = 282

 Score =  257 bits (657), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 115/202 (56%), Positives = 158/202 (78%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A   ++   L EDL++RE+L+  LK A V ++LIER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYAGNKDFAGKLAEDLQVREFLKKRLKNASVGRVLIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YSARPG++IGKKG DIE+++ +L+ M    +H+++ E+ KPE++A LIA SI
Sbjct: 61  AKNARITIYSARPGVVIGKKGEDIERLKVELTKMLGVPVHVNIEEIRKPEVDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K++++GRLNGAE++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            +DYGT+ A+T YG  G+KV+V
Sbjct: 181 DVDYGTSEAQTTYGIIGVKVWV 202


>gi|221069444|ref|ZP_03545549.1| ribosomal protein S3 [Comamonas testosteroni KF-1]
 gi|264676448|ref|YP_003276354.1| ribosomal protein S3 [Comamonas testosteroni CNB-2]
 gi|299531230|ref|ZP_07044641.1| 30S ribosomal protein S3 [Comamonas testosteroni S44]
 gi|220714467|gb|EED69835.1| ribosomal protein S3 [Comamonas testosteroni KF-1]
 gi|262206960|gb|ACY31058.1| ribosomal protein S3 [Comamonas testosteroni CNB-2]
 gi|298720813|gb|EFI61759.1| 30S ribosomal protein S3 [Comamonas testosteroni S44]
          Length = 289

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 122/219 (55%), Positives = 164/219 (74%), Gaps = 2/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A   ++  +L ED+K+REYL+  LK A VA++LIER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYASNRDFAGMLAEDIKVREYLKAKLKNAAVARVLIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++SARPG++IGKKG DIE ++K+L+      + +++ EV KPEI+A LIA SI
Sbjct: 61  AKNARITIFSARPGVVIGKKGEDIEALKKELAARLGVPVAVNIEEVRKPEIDAKLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDYG + A+T YG  G+KV+V   D +  +D  +PA E
Sbjct: 181 DIDYGFSEAKTTYGIIGVKVWVYKGDTLGRND--LPAVE 217


>gi|171060663|ref|YP_001793012.1| 30S ribosomal protein S3 [Leptothrix cholodnii SP-6]
 gi|226697726|sp|B1Y8I1|RS3_LEPCP RecName: Full=30S ribosomal protein S3
 gi|170778108|gb|ACB36247.1| ribosomal protein S3 [Leptothrix cholodnii SP-6]
          Length = 285

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 116/215 (53%), Positives = 163/215 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W+SRW+A    +  +L ED+++RE+L+  LK A V+++ IER 
Sbjct: 1   MGQKIHPTGFRLPVTRNWSSRWYANNRNFAGMLAEDIEVREFLKKKLKNAAVSRVTIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YSARPG++IGKKG DIE ++ +L+ M    + +++ EV KPE++A LIA+SI
Sbjct: 61  AKNARITIYSARPGVVIGKKGEDIENLKLELAKMLKVPVAVNIEEVRKPEVDAQLIAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDYGTA A+T YG  G+KV+V   D +++ D+ +
Sbjct: 181 DIDYGTAEAKTTYGVIGVKVWVYRGDRLANGDAPV 215


>gi|33594485|ref|NP_882129.1| 30S ribosomal protein S3 [Bordetella pertussis Tohama I]
 gi|33594757|ref|NP_882400.1| 30S ribosomal protein S3 [Bordetella parapertussis 12822]
 gi|33599028|ref|NP_886588.1| 30S ribosomal protein S3 [Bordetella bronchiseptica RB50]
 gi|61215724|sp|Q7VTC7|RS3_BORPE RecName: Full=30S ribosomal protein S3
 gi|61215729|sp|Q7W2F0|RS3_BORPA RecName: Full=30S ribosomal protein S3
 gi|61215738|sp|Q7WRB9|RS3_BORBR RecName: Full=30S ribosomal protein S3
 gi|33564561|emb|CAE43877.1| 30S ribosomal protein S3 [Bordetella pertussis Tohama I]
 gi|33564833|emb|CAE39776.1| 30S ribosomal protein S3 [Bordetella parapertussis]
 gi|33575074|emb|CAE30537.1| 30S ribosomal protein S3 [Bordetella bronchiseptica RB50]
          Length = 263

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 119/218 (54%), Positives = 161/218 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W SRWFA    +G +L ED+++REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVTRNWTSRWFADDKAFGTMLAEDIRVREYLKKKLKSASVGRVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI VYSARPG++IGK+G DIE ++  L  +    +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITVYSARPGVVIGKRGEDIENLKADLQRLMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           +QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TL+A
Sbjct: 121 SQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLKA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAA 218
           +IDYGT+ A T YG  GIKV+V   D +++ +    AA
Sbjct: 181 NIDYGTSEAHTTYGVIGIKVWVYKGDMLANGELPPEAA 218


>gi|293602629|ref|ZP_06685072.1| 30S ribosomal protein S3 [Achromobacter piechaudii ATCC 43553]
 gi|311109606|ref|YP_003982459.1| 30S ribosomal protein S3 [Achromobacter xylosoxidans A8]
 gi|292819001|gb|EFF78039.1| 30S ribosomal protein S3 [Achromobacter piechaudii ATCC 43553]
 gi|310764295|gb|ADP19744.1| ribosomal protein S3 [Achromobacter xylosoxidans A8]
          Length = 264

 Score =  256 bits (655), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 117/212 (55%), Positives = 160/212 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W+SRWFA    +G +L ED+++REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVTRNWSSRWFADDKAFGTMLAEDIRVREYLKKKLKSASVGRVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI VYSARPG++IGK+G DIE ++  L  +    +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITVYSARPGVVIGKRGEDIESLKADLQRLMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           +QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TL+A
Sbjct: 121 SQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLKA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
           +IDYGT+ A T YG  GIKV+V   D +++ +
Sbjct: 181 NIDYGTSEAHTTYGVIGIKVWVYKGDMLANGE 212


>gi|124268621|ref|YP_001022625.1| 30S ribosomal protein S3 [Methylibium petroleiphilum PM1]
 gi|152060875|sp|A2SLF1|RS3_METPP RecName: Full=30S ribosomal protein S3
 gi|124261396|gb|ABM96390.1| SSU ribosomal protein S3P [Methylibium petroleiphilum PM1]
          Length = 299

 Score =  256 bits (655), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 118/215 (54%), Positives = 162/215 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P+ FRL V   W+SRW+A    +  +L EDLK+REYL+  LK A V++ILIER 
Sbjct: 1   MGQKIHPVGFRLPVTRNWSSRWYASNRNFATMLAEDLKVREYLKAKLKSAAVSRILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YSARPG++IGKKG DIE ++ +L+      + +++ EV KPEI+A LIA SI
Sbjct: 61  AKNARITIYSARPGVVIGKKGEDIENLKAELTRRLGVPVAVNIEEVRKPEIDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDYG + A+T YG  G+KV+V   D +++ ++ +
Sbjct: 181 DIDYGFSEAKTTYGIIGVKVWVYRGDRLANGEAPV 215


>gi|187476545|ref|YP_784569.1| 30S ribosomal protein S3 [Bordetella avium 197N]
 gi|123766202|sp|Q2L2C0|RS3_BORA1 RecName: Full=30S ribosomal protein S3
 gi|115421131|emb|CAJ47615.1| 30S ribosomal protein S3 [Bordetella avium 197N]
          Length = 264

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 116/212 (54%), Positives = 161/212 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W+SRW+A   ++G +L ED+++REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVTRNWSSRWYADDKDFGGMLAEDIRVREYLKKKLKSASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI VYSARPG++IGK+G DIE ++  L  +    +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITVYSARPGVVIGKRGEDIESLKADLQRLMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           +QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TL+A
Sbjct: 121 SQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLKA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
           +IDYGT+ A T YG  GIKV+V   D +++ +
Sbjct: 181 NIDYGTSEAHTTYGVIGIKVWVYKGDMLANGE 212


>gi|134096315|ref|YP_001101390.1| 30S ribosomal protein S3 [Herminiimonas arsenicoxydans]
 gi|189045012|sp|A4G9T2|RS3_HERAR RecName: Full=30S ribosomal protein S3
 gi|133740218|emb|CAL63269.1| 30S ribosomal protein S3 [Herminiimonas arsenicoxydans]
          Length = 283

 Score =  256 bits (653), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 118/215 (54%), Positives = 156/215 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W SRW+A  S +  +L+EDLK+R YL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLSVTRNWASRWYAGNSNFATMLNEDLKVRAYLKTKLKNASVGRVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YS+RPG++IGKKG DIE ++  L+ M    +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITIYSSRPGVVIGKKGEDIEVLKSALTKMMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++R E Y EGRVPL TLRA
Sbjct: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARKEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDYG   AET YG  GIKV+V   D +   +  +
Sbjct: 181 EIDYGFGEAETTYGIIGIKVWVYKGDRLPSGEPPV 215


>gi|254294434|ref|YP_003060457.1| ribosomal protein S3 [Hirschia baltica ATCC 49814]
 gi|254042965|gb|ACT59760.1| ribosomal protein S3 [Hirschia baltica ATCC 49814]
          Length = 253

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 127/239 (53%), Positives = 169/239 (70%), Gaps = 19/239 (7%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQ---------------C 45
           MGQK+NPI  RLGVN T +SRW+A   ++G LLHEDL++R+Y+Q                
Sbjct: 1   MGQKVNPIGLRLGVNRTADSRWYADSVDFGRLLHEDLRLRKYIQEWRPKDDNSGKRTGEV 60

Query: 46  HLKQAGVAKILIERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNE 105
             ++AG++KI+IER HK CRI V+++RPG++IGKKG DIEK+RK LS     E+ +++ E
Sbjct: 61  LARRAGISKIIIERPHKKCRITVHTSRPGMVIGKKGADIEKLRKDLSKFVTDEVFVNLVE 120

Query: 106 VPKPEINATLIAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRT 165
           V KPEI+A L+A+ +A+QLERRV FRRAMKR +QSAMR GA+G+++  +GRL GAE++RT
Sbjct: 121 VRKPEIDAKLVAEDVARQLERRVSFRRAMKRTIQSAMRLGAEGIRLNVAGRLGGAEIART 180

Query: 166 ECYLEGRVPLQTLRAHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVE 224
           E Y EGRVPL TLRA IDYG A A T YG  GIKV++  + E+ + D   P A  R  E
Sbjct: 181 EWYREGRVPLHTLRADIDYGVAEAMTTYGIIGIKVWI-FKGEIMEHD---PMARDRKAE 235


>gi|309782840|ref|ZP_07677560.1| ribosomal protein S3 [Ralstonia sp. 5_7_47FAA]
 gi|308918264|gb|EFP63941.1| ribosomal protein S3 [Ralstonia sp. 5_7_47FAA]
          Length = 262

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 164/224 (73%), Gaps = 3/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  +++  +L ED+++RE+L+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYASNTQFAGMLKEDIEVREFLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YS+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE++A LIA SI
Sbjct: 61  AKNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGVPVHVNIEEIRKPEVDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI---PAAEHR 221
            IDYG + AET YG  G+KV+V   D +  +D+ +   P  E R
Sbjct: 181 DIDYGFSEAETTYGIIGVKVWVYKGDHLGRNDAPVVEEPQEERR 224


>gi|207721892|ref|YP_002252330.1| 30s ribosomal protein s3 [Ralstonia solanacearum MolK2]
 gi|300702786|ref|YP_003744387.1| 30S ribosomal protein S3 [Ralstonia solanacearum CFBP2957]
 gi|206587060|emb|CAQ17644.1| 30s ribosomal protein s3 [Ralstonia solanacearum MolK2]
 gi|299070448|emb|CBJ41743.1| 30S ribosomal subunit protein S3 [Ralstonia solanacearum CFBP2957]
          Length = 264

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 164/224 (73%), Gaps = 3/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  +++  +L ED+++RE+L+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYASNTQFAGMLKEDIEVREFLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YS+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE++A LIA SI
Sbjct: 61  AKNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGVPVHVNIEEIRKPEVDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI---PAAEHR 221
            IDYG + AET YG  G+KV+V   D +  +D+ +   P  E R
Sbjct: 181 DIDYGFSEAETTYGIIGVKVWVYKGDHLGRNDAPVVEEPQEERR 224


>gi|241664526|ref|YP_002982886.1| 30S ribosomal protein S3 [Ralstonia pickettii 12D]
 gi|240866553|gb|ACS64214.1| ribosomal protein S3 [Ralstonia pickettii 12D]
          Length = 264

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 164/224 (73%), Gaps = 3/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  +++  +L ED+++RE+L+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYASNTQFAGMLKEDIEVREFLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YS+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE++A LIA SI
Sbjct: 61  AKNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGVPVHVNIEEIRKPEVDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI---PAAEHR 221
            IDYG + AET YG  G+KV+V   D +  +D+ +   P  E R
Sbjct: 181 DIDYGFSEAETTYGIIGVKVWVYKGDHLGRNDAPVVEEPQEERR 224


>gi|17547732|ref|NP_521134.1| 30S ribosomal protein S3 [Ralstonia solanacearum GMI1000]
 gi|27734516|sp|Q8XV18|RS3_RALSO RecName: Full=30S ribosomal protein S3
 gi|17430037|emb|CAD16722.1| probable 30s ribosomal protein s3 [Ralstonia solanacearum GMI1000]
          Length = 264

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 164/224 (73%), Gaps = 3/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  +++  +L ED+++RE+L+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYASNTQFAGMLKEDIEVREFLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YS+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE++A LIA SI
Sbjct: 61  AKNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGVPVHVNIEEIRKPEVDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI---PAAEHR 221
            IDYG + AET YG  G+KV+V   D +  +D+ +   P  E R
Sbjct: 181 DIDYGFSEAETTYGIIGVKVWVYKGDHLGRNDAPVVEEPQEERR 224


>gi|299065421|emb|CBJ36590.1| 30S ribosomal subunit protein S3 [Ralstonia solanacearum CMR15]
          Length = 265

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 164/224 (73%), Gaps = 3/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  +++  +L ED+++RE+L+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNTQFAGMLKEDIEVREFLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YS+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE++A LIA SI
Sbjct: 61  AKNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGVPVHVNIEEIRKPEVDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI---PAAEHR 221
            IDYG + AET YG  G+KV+V   D +  +D+ +   P  E R
Sbjct: 181 DIDYGFSEAETTYGIIGVKVWVYKGDHLGRNDAPVVEEPQEERR 224


>gi|187930358|ref|YP_001900845.1| 30S ribosomal protein S3 [Ralstonia pickettii 12J]
 gi|226697747|sp|B2UEL3|RS3_RALPJ RecName: Full=30S ribosomal protein S3
 gi|187727248|gb|ACD28413.1| ribosomal protein S3 [Ralstonia pickettii 12J]
          Length = 262

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 164/224 (73%), Gaps = 3/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  +++  +L ED+++RE+L+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYASNTQFAGMLKEDIEVREFLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YS+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE++A LIA SI
Sbjct: 61  AKNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGVPVHVNIEEIRKPEVDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI---PAAEHR 221
            IDYG + AET YG  G+KV+V   D +  +D+ +   P  E R
Sbjct: 181 DIDYGFSEAETTYGIIGVKVWVYKGDHLGRNDAPVVEEPQEERR 224


>gi|160895846|ref|YP_001561428.1| 30S ribosomal protein S3 [Delftia acidovorans SPH-1]
 gi|160361430|gb|ABX33043.1| ribosomal protein S3 [Delftia acidovorans SPH-1]
          Length = 290

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 121/219 (55%), Positives = 164/219 (74%), Gaps = 2/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A   ++  +L ED+K+RE+L+  LK A V++ILIER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYASNRDFAGMLAEDIKVREFLKAKLKNAAVSRILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++SARPG++IGKKG DIE ++K+L+      + +++ EV KPEI+A LIA SI
Sbjct: 61  AKNARITIFSARPGVVIGKKGEDIENLKKELATRLGVPVAVNIEEVRKPEIDAKLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++R E Y EGRVPL TLRA
Sbjct: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARCEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDYG + A+T YG  G+KV+V   D +  +D  +PAAE
Sbjct: 181 DIDYGFSEAKTTYGVIGVKVWVYKGDTLGRND--LPAAE 217


>gi|89902549|ref|YP_525020.1| 30S ribosomal protein S3 [Rhodoferax ferrireducens T118]
 gi|122996738|sp|Q21RW4|RS3_RHOFD RecName: Full=30S ribosomal protein S3
 gi|89347286|gb|ABD71489.1| SSU ribosomal protein S3P [Rhodoferax ferrireducens T118]
          Length = 298

 Score =  255 bits (651), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 120/218 (55%), Positives = 164/218 (75%), Gaps = 2/218 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL ++  W SRW+A   ++  +L ED+K+REYL+  LK A V+++LIER 
Sbjct: 1   MGQKIHPTGFRLSISRNWASRWYANDRDFAGMLAEDIKVREYLKAKLKNASVSRVLIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++SARPG++IGKKG DIE ++++LS      + +++ EV KPEI+A LIA SI
Sbjct: 61  AKNARITIFSARPGVVIGKKGEDIENLKRELSRQLGVPVAVNIEEVRKPEIDAKLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++R E Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGALGIKIMSSGRLNGIEIARCEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAA 218
            IDYGT+ A+T YG  G+KV+V   D +  +D  +PAA
Sbjct: 181 DIDYGTSEAQTTYGIIGVKVWVYKGDTLGRND--LPAA 216


>gi|145588248|ref|YP_001154845.1| ribosomal protein S3 [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|189045027|sp|A4SUW7|RS3_POLSQ RecName: Full=30S ribosomal protein S3
 gi|145046654|gb|ABP33281.1| SSU ribosomal protein S3P [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 275

 Score =  255 bits (651), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 114/202 (56%), Positives = 154/202 (76%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRL V   W SRW+A  +++  +L ED+ +R YL+  LK A V+K++IER 
Sbjct: 1   MGQKINPTGFRLAVTKNWTSRWYANNTDFAKMLKEDVDVRIYLKKKLKNASVSKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YS+RPG++IGKKG DIE +R++L       +H+++ E+ KPE++A LIA SI
Sbjct: 61  AKNARITIYSSRPGVVIGKKGEDIEVLRRELQKRMGVPVHVNIEEIRKPEVDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNGAE++R E Y EGRVPL TL+A
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGAEIARREWYREGRVPLHTLKA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ AET YG  G+KV+V
Sbjct: 181 DIDYATSEAETTYGIIGVKVWV 202


>gi|83748155|ref|ZP_00945182.1| SSU ribosomal protein S3P [Ralstonia solanacearum UW551]
 gi|207723101|ref|YP_002253506.1| 30s ribosomal protein s3 [Ralstonia solanacearum IPO1609]
 gi|83725123|gb|EAP72274.1| SSU ribosomal protein S3P [Ralstonia solanacearum UW551]
 gi|206588294|emb|CAQ18992.1| 30s ribosomal protein s3 [Ralstonia solanacearum IPO1609]
          Length = 264

 Score =  254 bits (650), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 118/224 (52%), Positives = 164/224 (73%), Gaps = 3/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  +++  +L ED+++RE+L+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYASNTQFAGMLKEDIEVREFLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YS+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE++A LIA SI
Sbjct: 61  AKNARITIYSSRPGVVIGKKGEDIELLKVELQRRMGVPVHVNIEEIRKPEVDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI---PAAEHR 221
            IDYG + AET YG  G+KV+V   D +  +D+ +   P  E R
Sbjct: 181 DIDYGFSEAETTYGIIGVKVWVYKGDHLGRNDAPVVEEPQEERR 224


>gi|319796211|ref|YP_004157851.1| ribosomal protein s3 [Variovorax paradoxus EPS]
 gi|315598674|gb|ADU39740.1| ribosomal protein S3 [Variovorax paradoxus EPS]
          Length = 304

 Score =  254 bits (650), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 120/219 (54%), Positives = 163/219 (74%), Gaps = 2/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W+SRW+A   ++  +L ED+K+REYL+  LK A V++++IER 
Sbjct: 1   MGQKIHPTGFRLAVTRNWSSRWYASDRDFAGMLAEDIKVREYLKKKLKNASVSRVMIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YSARPG++IGKKG DIE ++++L       + +++ EV KPEI+A LIA SI
Sbjct: 61  AKNARITIYSARPGVVIGKKGEDIENLKRELGKQLGVPVAVNIEEVRKPEIDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++R E Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGALGIKIMSSGRLNGIEIARCEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDYGT+ A+T YG  G+KV+V   D +  +D  +PA E
Sbjct: 181 DIDYGTSEAKTTYGVIGVKVWVYKGDTLGRND--LPAVE 217


>gi|296282588|ref|ZP_06860586.1| 30S ribosomal protein S3 [Citromicrobium bathyomarinum JL354]
          Length = 231

 Score =  254 bits (649), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 125/223 (56%), Positives = 164/223 (73%), Gaps = 4/223 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK NPI  RL +N TW+SRW+A G +Y  LL ED++IR+++   L QA ++K++IER 
Sbjct: 1   MGQKSNPIGLRLQINRTWDSRWYAEGRDYAKLLKEDIEIRKHIVNSLPQAAISKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K CRI +Y+ARPG+IIGKKG DIEK+R  LS MT SE+ L++ E+ KPEI+A L+AQ I
Sbjct: 61  AKLCRISIYAARPGVIIGKKGADIEKLRTTLSRMTESEVKLNIVEIRKPEIDAKLVAQGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QL RRV FRRAMKRAVQSA+R GA+G+++   GRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 ADQLVRRVAFRRAMKRAVQSALRLGAEGIRITCGGRLGGAEIARVEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVV 223
           ++DY  A A TAYG  GIK ++  + E+   D   P A+ R++
Sbjct: 181 NVDYAEAEALTAYGIIGIKCWI-FKGEILAHD---PTAQDRLM 219


>gi|114330580|ref|YP_746802.1| 30S ribosomal protein S3 [Nitrosomonas eutropha C91]
 gi|122314426|sp|Q0AII9|RS3_NITEC RecName: Full=30S ribosomal protein S3
 gi|114307594|gb|ABI58837.1| SSU ribosomal protein S3P [Nitrosomonas eutropha C91]
          Length = 215

 Score =  254 bits (648), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 114/212 (53%), Positives = 159/212 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRL V   W+SRW+A   ++   L+ED+ +R+YLQ  L  A V  I+IER 
Sbjct: 1   MGQKINPTGFRLSVLKNWSSRWYANTKKFSVFLNEDINVRQYLQKRLAHASVGSIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N +I ++++RPG++IGKKG DIE +RK +  + N  +H+++ E+ KPEI+A LIA SI
Sbjct: 61  SRNAKITIHTSRPGVVIGKKGEDIEILRKNVEKLMNVPVHINIEEIRKPEIDAQLIAASI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMKRAIQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            +DYGT+ A+T YG  G+KV+V   +++S  D
Sbjct: 181 EVDYGTSEAKTTYGVIGVKVWVFKGEQLSVRD 212


>gi|300690166|ref|YP_003751161.1| 30S ribosomal subunit protein S3 [Ralstonia solanacearum PSI07]
 gi|299077226|emb|CBJ49852.1| 30S ribosomal subunit protein S3 [Ralstonia solanacearum PSI07]
          Length = 264

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 164/224 (73%), Gaps = 3/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  +++  +L ED+++RE+L+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYASNTQFAGMLKEDIEVREFLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YS+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE++A LIA SI
Sbjct: 61  AKNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGVPVHVNIEEIRKPEVDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI---PAAEHR 221
            IDYG + AET YG  G+KV+V   D +  +++ +   P  E R
Sbjct: 181 DIDYGFSEAETTYGIIGVKVWVYKGDHLGRNEAPVVEEPQEERR 224


>gi|77918321|ref|YP_356136.1| 30S ribosomal protein S3 [Pelobacter carbinolicus DSM 2380]
 gi|91207825|sp|Q3A6P1|RS3_PELCD RecName: Full=30S ribosomal protein S3
 gi|77544404|gb|ABA87966.1| SSU ribosomal protein S3P [Pelobacter carbinolicus DSM 2380]
          Length = 210

 Score =  253 bits (647), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 122/212 (57%), Positives = 160/212 (75%), Gaps = 2/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI FRLGV  TW+SRW+A G EY  LLHED+K+R YL+  L  AGVAKI +ER 
Sbjct: 1   MGQKVHPIGFRLGVVKTWSSRWYAEG-EYSQLLHEDIKLRNYLKKRLYHAGVAKIELERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I VY+ARPG+IIGKKG ++E ++K L+ +T+ E+ +++ EV KPEI+A L+A+++
Sbjct: 60  ASKAKINVYAARPGIIIGKKGAEVEALKKDLARLTDKEVFINIQEVRKPEIDAQLVAENV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK++V  A++FGA G+K+  SGRL GAE+SRTE Y EGRVPL TLRA
Sbjct: 120 ATQLERRVAFRRAMKKSVSMALKFGAQGIKITCSGRLGGAEMSRTEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYG A A+T YG  G+KV +  + EV   D
Sbjct: 180 DIDYGFAEAKTTYGIIGVKVLI-FKGEVLSQD 210


>gi|78064930|ref|YP_367699.1| 30S ribosomal protein S3 [Burkholderia sp. 383]
 gi|107024297|ref|YP_622624.1| 30S ribosomal protein S3 [Burkholderia cenocepacia AU 1054]
 gi|115350328|ref|YP_772167.1| 30S ribosomal protein S3 [Burkholderia ambifaria AMMD]
 gi|116688378|ref|YP_834001.1| 30S ribosomal protein S3 [Burkholderia cenocepacia HI2424]
 gi|134294449|ref|YP_001118184.1| 30S ribosomal protein S3 [Burkholderia vietnamiensis G4]
 gi|170700700|ref|ZP_02891695.1| ribosomal protein S3 [Burkholderia ambifaria IOP40-10]
 gi|170731688|ref|YP_001763635.1| 30S ribosomal protein S3 [Burkholderia cenocepacia MC0-3]
 gi|171318354|ref|ZP_02907512.1| ribosomal protein S3 [Burkholderia ambifaria MEX-5]
 gi|172059347|ref|YP_001806999.1| 30S ribosomal protein S3 [Burkholderia ambifaria MC40-6]
 gi|206558647|ref|YP_002229407.1| 30S ribosomal protein S3 [Burkholderia cenocepacia J2315]
 gi|91207644|sp|Q39KG1|RS3_BURS3 RecName: Full=30S ribosomal protein S3
 gi|122324260|sp|Q0BJ40|RS3_BURCM RecName: Full=30S ribosomal protein S3
 gi|123071807|sp|Q1BRV4|RS3_BURCA RecName: Full=30S ribosomal protein S3
 gi|152060850|sp|A0K3N1|RS3_BURCH RecName: Full=30S ribosomal protein S3
 gi|189044961|sp|A4JAP6|RS3_BURVG RecName: Full=30S ribosomal protein S3
 gi|226697672|sp|B1YRD6|RS3_BURA4 RecName: Full=30S ribosomal protein S3
 gi|226697673|sp|B1JU28|RS3_BURCC RecName: Full=30S ribosomal protein S3
 gi|226697674|sp|B4E5C6|RS3_BURCJ RecName: Full=30S ribosomal protein S3
 gi|77965675|gb|ABB07055.1| SSU ribosomal protein S3P [Burkholderia sp. 383]
 gi|105894486|gb|ABF77651.1| SSU ribosomal protein S3P [Burkholderia cenocepacia AU 1054]
 gi|115280316|gb|ABI85833.1| SSU ribosomal protein S3P [Burkholderia ambifaria AMMD]
 gi|116646467|gb|ABK07108.1| SSU ribosomal protein S3P [Burkholderia cenocepacia HI2424]
 gi|134137606|gb|ABO53349.1| SSU ribosomal protein S3P [Burkholderia vietnamiensis G4]
 gi|169814930|gb|ACA89513.1| ribosomal protein S3 [Burkholderia cenocepacia MC0-3]
 gi|170134370|gb|EDT02703.1| ribosomal protein S3 [Burkholderia ambifaria IOP40-10]
 gi|171096432|gb|EDT41331.1| ribosomal protein S3 [Burkholderia ambifaria MEX-5]
 gi|171991864|gb|ACB62783.1| ribosomal protein S3 [Burkholderia ambifaria MC40-6]
 gi|198034684|emb|CAR50551.1| 30S ribosomal protein S3 [Burkholderia cenocepacia J2315]
          Length = 266

 Score =  253 bits (646), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 115/215 (53%), Positives = 160/215 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  + + A+L ED+ +REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNNNFAAMLQEDIGVREYLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YS+RPG++IGKKG DIE+++ +L       +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITIYSSRPGVVIGKKGEDIEQLKTELQRRMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDY T+ A+T YG  G+KV+V   D +  +D+ +
Sbjct: 181 DIDYATSEAKTTYGIIGVKVWVYKGDTLGRNDAPV 215


>gi|171462885|ref|YP_001796998.1| ribosomal protein S3 [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|171192423|gb|ACB43384.1| ribosomal protein S3 [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 271

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 113/202 (55%), Positives = 152/202 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRL V   W SRW+A  +++  +L ED+ +R YL+  LK A V+K++IER 
Sbjct: 1   MGQKINPTGFRLAVTKNWTSRWYANNTDFAKMLKEDVDVRSYLKKKLKNASVSKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ RI +YS+RPG++IGKKG DIE +R++L       +H ++ E+ KPE++A LIA SI
Sbjct: 61  AKSARITIYSSRPGVVIGKKGEDIEVLRRELQKRMGVPVHANIEEIRKPEVDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q AMR GA G+K+++SGRLNGAE++R E Y EGRVPL TL+A
Sbjct: 121 TQQLEKRIMFRRAMKRAMQKAMRLGAQGIKIMSSGRLNGAEIARREWYREGRVPLHTLKA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ AET YG  G+KV+V
Sbjct: 181 DIDYATSEAETTYGIIGVKVWV 202


>gi|300309462|ref|YP_003773554.1| 30S ribosomal protein S3 [Herbaspirillum seropedicae SmR1]
 gi|300072247|gb|ADJ61646.1| 30S ribosomal subunit S3 protein [Herbaspirillum seropedicae SmR1]
          Length = 272

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/219 (53%), Positives = 160/219 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W SRW+A  + +  +L+EDLK+R YL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YS+RPG++IGKKG DIE ++  L+ +    +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDYG   AET YG  G+KV+V   D +++ +S +   E
Sbjct: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGE 219


>gi|82701906|ref|YP_411472.1| 30S ribosomal protein S3 [Nitrosospira multiformis ATCC 25196]
 gi|91207822|sp|Q2YAZ1|RS3_NITMU RecName: Full=30S ribosomal protein S3
 gi|82409971|gb|ABB74080.1| SSU ribosomal protein S3P [Nitrosospira multiformis ATCC 25196]
          Length = 286

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 114/202 (56%), Positives = 155/202 (76%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W+S+W+A G  +  +L+ED+K+REYL+  L  A V +++IER 
Sbjct: 1   MGQKIHPTGFRLSVLKNWSSKWYANGKSFPGMLNEDIKVREYLKKKLAHASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YS+RPG++IGKKG DIE +R  L  +    +H+++ E+ KPEI+A LIA +I
Sbjct: 61  SKNARITIYSSRPGVVIGKKGEDIEVLRGALQKLMGVPVHVNIEEIRKPEIDAQLIADNI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            +DYG + A+T YG  GIKV+V
Sbjct: 181 DLDYGVSEAKTTYGVIGIKVWV 202


>gi|312795780|ref|YP_004028702.1| SSU ribosomal protein S3P [Burkholderia rhizoxinica HKI 454]
 gi|312167555|emb|CBW74558.1| SSU ribosomal protein S3P [Burkholderia rhizoxinica HKI 454]
          Length = 267

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/225 (52%), Positives = 165/225 (73%), Gaps = 2/225 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  +++  +L ED+ +REYL+  LK A V++++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNTQFAGMLKEDIGVREYLKKKLKNASVSRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN R+ ++S+RPG++IGKKG DIE ++ +L       +H+++ EV KPE +A LIA SI
Sbjct: 61  AKNARLTIFSSRPGVVIGKKGEDIELLKTELQRRMGVPVHVNIEEVRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDY T+ A+T YG  G+KV+V   D +  +D  +P AE  V +K
Sbjct: 181 DIDYATSEAKTTYGIIGVKVWVYKGDTLGRND--MPVAEEPVEDK 223


>gi|91785459|ref|YP_560665.1| 30S ribosomal protein S3 [Burkholderia xenovorans LB400]
 gi|122970104|sp|Q13TH6|RS3_BURXL RecName: Full=30S ribosomal protein S3
 gi|91689413|gb|ABE32613.1| SSU ribosomal protein S3P [Burkholderia xenovorans LB400]
          Length = 268

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/225 (52%), Positives = 162/225 (72%), Gaps = 2/225 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  + + A+L ED+ +REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNNNFAAMLQEDIGVREYLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YS+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITIYSSRPGVVIGKKGEDIELLKSELQRRMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDY T+ A+T YG  G+KV+V   D +  +D+  P  E    EK
Sbjct: 181 DIDYATSEAKTTYGIIGVKVWVYKGDTLGRNDA--PVVEEVAEEK 223


>gi|294341604|emb|CAZ90021.1| 30S ribosomal protein S3 [Thiomonas sp. 3As]
          Length = 274

 Score =  252 bits (644), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 122/227 (53%), Positives = 163/227 (71%), Gaps = 2/227 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W SRW+A  ++Y  +L ED+ +REYL   LK A V+++LIER 
Sbjct: 1   MGQKIHPTGFRLAVTRGWASRWYAPSTQYAKMLSEDIMVREYLAKRLKNASVSRVLIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YSARPG++IGKKG DIE ++ +L+      + + + EV KPEI+A LIA SI
Sbjct: 61  AKNARITIYSARPGVVIGKKGEDIENLKAELAKRLGVPVAVDIEEVRKPEIDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R+ FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++R E Y EGRVPLQTLRA
Sbjct: 121 TQQLEKRIQFRRAMKRAMQNAMRMGAQGIKIMSSGRLNGIEIARREWYREGRVPLQTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPA-AEHRVVEKD 226
           +IDY T+ A+T YG  G+KV+V  + +     + +PA AE    E+D
Sbjct: 181 NIDYATSEAKTTYGVIGVKVWV-YKGDTPAKGAIVPAKAEPAAPEED 226


>gi|296137300|ref|YP_003644542.1| ribosomal protein S3 [Thiomonas intermedia K12]
 gi|295797422|gb|ADG32212.1| ribosomal protein S3 [Thiomonas intermedia K12]
          Length = 278

 Score =  252 bits (644), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 122/227 (53%), Positives = 163/227 (71%), Gaps = 2/227 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W SRW+A  ++Y  +L ED+ +REYL   LK A V+++LIER 
Sbjct: 1   MGQKIHPTGFRLAVTRGWASRWYAPSTQYAKMLSEDIMVREYLAKRLKNASVSRVLIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YSARPG++IGKKG DIE ++ +L+      + + + EV KPEI+A LIA SI
Sbjct: 61  AKNARITIYSARPGVVIGKKGEDIENLKAELAKRLGVPVAVDIEEVRKPEIDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R+ FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++R E Y EGRVPLQTLRA
Sbjct: 121 TQQLEKRIQFRRAMKRAMQNAMRMGAQGIKIMSSGRLNGIEIARREWYREGRVPLQTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPA-AEHRVVEKD 226
           +IDY T+ A+T YG  G+KV+V  + +     + +PA AE    E+D
Sbjct: 181 NIDYATSEAKTTYGVIGVKVWV-YKGDTPAKGAIVPAKAEPAAPEED 226


>gi|238025938|ref|YP_002910169.1| 30S ribosomal protein S3 [Burkholderia glumae BGR1]
 gi|330815255|ref|YP_004358960.1| 30S ribosomal protein S3 [Burkholderia gladioli BSR3]
 gi|237875132|gb|ACR27465.1| 30S ribosomal protein S3 [Burkholderia glumae BGR1]
 gi|327367648|gb|AEA59004.1| 30S ribosomal protein S3 [Burkholderia gladioli BSR3]
          Length = 266

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 115/215 (53%), Positives = 159/215 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  + + A+L ED+ +REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNNNFAAMLQEDIGVREYLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI +YS+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITIYSSRPGVVIGKKGEDIELLKTELQRRMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDY T+ A+T YG  G+KV+V   D +  +D+ +
Sbjct: 181 DIDYATSEAKTTYGIIGVKVWVYKGDTLGRNDAPV 215


>gi|325529684|gb|EGD06547.1| 30S ribosomal protein S3 [Burkholderia sp. TJI49]
          Length = 266

 Score =  252 bits (643), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 114/215 (53%), Positives = 160/215 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  + + A+L ED+ +REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNNNFAAMLQEDIGVREYLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++S+RPG++IGKKG DIE+++ +L       +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITIFSSRPGVVIGKKGEDIEQLKTELQRRMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDY T+ A+T YG  G+KV+V   D +  +D+ +
Sbjct: 181 DIDYATSEAKTTYGIIGVKVWVYKGDTLGRNDAPV 215


>gi|94312242|ref|YP_585452.1| 30S ribosomal protein S3 [Cupriavidus metallidurans CH34]
 gi|123081148|sp|Q1LI43|RS3_RALME RecName: Full=30S ribosomal protein S3
 gi|93356094|gb|ABF10183.1| 30S ribosomal subunit protein S3 [Cupriavidus metallidurans CH34]
          Length = 265

 Score =  251 bits (642), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 114/215 (53%), Positives = 160/215 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  +++  +L ED+++RE+L+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNTKFAGMLKEDIEVREFLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N RI +YS+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE +A LIA SI
Sbjct: 61  ARNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDYG + AET YG  G+KV+V   D +  +D+ +
Sbjct: 181 DIDYGFSEAETTYGIIGVKVWVYKGDHLGRNDAPV 215


>gi|74316429|ref|YP_314169.1| 30S ribosomal protein S3 [Thiobacillus denitrificans ATCC 25259]
 gi|91207848|sp|Q3SLP3|RS3_THIDA RecName: Full=30S ribosomal protein S3
 gi|74055924|gb|AAZ96364.1| ribosomal protein S3 [Thiobacillus denitrificans ATCC 25259]
          Length = 234

 Score =  251 bits (642), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 119/218 (54%), Positives = 161/218 (73%), Gaps = 2/218 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+PI FRLGV   W ++W+     +   L ED+K+R+YL+  L  A V+K+LIER 
Sbjct: 1   MGQKIHPIGFRLGVQRIWTAKWYGSNRNFSDTLLEDIKVRDYLKKKLSHASVSKVLIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++S RPG++IGKKG DIE +R +L+ + +  +H+++ EV KPE +A ++A  I
Sbjct: 61  AKNARITIFSGRPGVVIGKKGEDIEVLRGELARLMSVPVHVNIEEVRKPETDAQIVADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV+FRRAMKRA+Q+AMR GA G+K+++SGRLNGAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAA 218
            IDYG A A+T YG  GIKV+V   D ++  +   PAA
Sbjct: 181 EIDYGFAEAKTTYGIIGIKVWVYKGDALTRGEQ--PAA 216


>gi|296163315|ref|ZP_06846076.1| ribosomal protein S3 [Burkholderia sp. Ch1-1]
 gi|295886454|gb|EFG66311.1| ribosomal protein S3 [Burkholderia sp. Ch1-1]
          Length = 268

 Score =  251 bits (642), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 118/225 (52%), Positives = 162/225 (72%), Gaps = 2/225 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  + + A+L ED+ +REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNNNFAAMLQEDIGVREYLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++S+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITIFSSRPGVVIGKKGEDIELLKSELQKRMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDY T+ A+T YG  G+KV+V   D +  +D+  P  E    EK
Sbjct: 181 DIDYATSEAKTTYGIIGVKVWVYKGDTLGRNDA--PVVEEVAEEK 223


>gi|187925610|ref|YP_001897252.1| 30S ribosomal protein S3 [Burkholderia phytofirmans PsJN]
 gi|295677926|ref|YP_003606450.1| ribosomal protein S3 [Burkholderia sp. CCGE1002]
 gi|307731249|ref|YP_003908473.1| 30S ribosomal protein S3 [Burkholderia sp. CCGE1003]
 gi|323527596|ref|YP_004229749.1| 30S ribosomal protein S3 [Burkholderia sp. CCGE1001]
 gi|226697677|sp|B2T745|RS3_BURPP RecName: Full=30S ribosomal protein S3
 gi|187716804|gb|ACD18028.1| ribosomal protein S3 [Burkholderia phytofirmans PsJN]
 gi|295437769|gb|ADG16939.1| ribosomal protein S3 [Burkholderia sp. CCGE1002]
 gi|307585784|gb|ADN59182.1| ribosomal protein S3 [Burkholderia sp. CCGE1003]
 gi|323384598|gb|ADX56689.1| ribosomal protein S3 [Burkholderia sp. CCGE1001]
          Length = 268

 Score =  251 bits (642), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 118/225 (52%), Positives = 162/225 (72%), Gaps = 2/225 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  + + A+L ED+ +REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNNNFAAMLQEDIGVREYLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++S+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITIFSSRPGVVIGKKGEDIELLKSELQKRMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDY T+ A+T YG  G+KV+V   D +  +D+  P  E    EK
Sbjct: 181 DIDYATSEAKTTYGIIGVKVWVYKGDTLGRNDA--PVVEEVAEEK 223


>gi|209521379|ref|ZP_03270092.1| ribosomal protein S3 [Burkholderia sp. H160]
 gi|209498199|gb|EDZ98341.1| ribosomal protein S3 [Burkholderia sp. H160]
          Length = 268

 Score =  251 bits (642), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 118/225 (52%), Positives = 162/225 (72%), Gaps = 2/225 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  + + A+L ED+ +REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNNNFAAMLQEDIGVREYLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++S+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITIFSSRPGVVIGKKGEDIELLKSELQKRMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDY T+ A+T YG  G+KV+V   D +  +D+  P  E    EK
Sbjct: 181 DIDYATSEAKTTYGIIGVKVWVYKGDTLGRNDA--PVVEEVAEEK 223


>gi|190572950|ref|YP_001970795.1| 30S ribosomal protein S3 [Stenotrophomonas maltophilia K279a]
 gi|194364540|ref|YP_002027150.1| 30S ribosomal protein S3 [Stenotrophomonas maltophilia R551-3]
 gi|254521448|ref|ZP_05133503.1| ribosomal protein S3 [Stenotrophomonas sp. SKA14]
 gi|190010872|emb|CAQ44481.1| putative 30S ribosomal protein S3 [Stenotrophomonas maltophilia
           K279a]
 gi|194347344|gb|ACF50467.1| ribosomal protein S3 [Stenotrophomonas maltophilia R551-3]
 gi|219719039|gb|EED37564.1| ribosomal protein S3 [Stenotrophomonas sp. SKA14]
          Length = 244

 Score =  251 bits (641), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 120/210 (57%), Positives = 160/210 (76%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K++PI  RLG++  WNS+W+A  +E+   L  DLK+RE L+  L QAG++KILIER 
Sbjct: 1   MGHKVHPIGIRLGISKDWNSKWYANKAEFAGYLAADLKVREMLRKKLAQAGISKILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +++ARPG++IGK+G DIEK+RK++S M     H++V EV KPE++A L+A+SI
Sbjct: 61  AKTARVTIHTARPGVVIGKRGEDIEKLRKEVSEMMGVPAHINVTEVRKPELDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKR+V +AMR GA G+KV   GRLNGAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIMFRRAMKRSVGNAMRLGALGIKVNVGGRLNGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            IDYG A A+T YG  GIKV++  + EV D
Sbjct: 181 DIDYGFAEAKTTYGIIGIKVWI-YKGEVFD 209


>gi|167582617|ref|ZP_02375491.1| 30S ribosomal protein S3 [Burkholderia thailandensis TXDOH]
 gi|167838206|ref|ZP_02465065.1| 30S ribosomal protein S3 [Burkholderia thailandensis MSMB43]
          Length = 266

 Score =  251 bits (641), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 114/215 (53%), Positives = 159/215 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  + + A+L ED+ +REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNNNFAAMLQEDIGVREYLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++S+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITIFSSRPGVVIGKKGEDIELLKTELQRRMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDY T+ A+T YG  G+KV+V   D +  +D+ +
Sbjct: 181 DIDYATSEAKTTYGVIGVKVWVYKGDTLGRNDAPV 215


>gi|83719069|ref|YP_443566.1| 30S ribosomal protein S3 [Burkholderia thailandensis E264]
 gi|167620731|ref|ZP_02389362.1| 30S ribosomal protein S3 [Burkholderia thailandensis Bt4]
 gi|123726556|sp|Q2SU33|RS3_BURTA RecName: Full=30S ribosomal protein S3
 gi|83652894|gb|ABC36957.1| ribosomal protein S3 [Burkholderia thailandensis E264]
          Length = 266

 Score =  251 bits (641), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 114/215 (53%), Positives = 159/215 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  + + A+L ED+ +REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNNNFAAMLQEDIGVREYLKKKLKNASVGRVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++S+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITIFSSRPGVVIGKKGEDIELLKTELQRRMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDY T+ A+T YG  G+KV+V   D +  +D+ +
Sbjct: 181 DIDYATSEAKTTYGVIGVKVWVYKGDTLGRNDAPV 215


>gi|303256456|ref|ZP_07342470.1| ribosomal protein S3 [Burkholderiales bacterium 1_1_47]
 gi|331000650|ref|ZP_08324303.1| ribosomal protein S3 [Parasutterella excrementihominis YIT 11859]
 gi|302859947|gb|EFL83024.1| ribosomal protein S3 [Burkholderiales bacterium 1_1_47]
 gi|329570862|gb|EGG52573.1| ribosomal protein S3 [Parasutterella excrementihominis YIT 11859]
          Length = 264

 Score =  251 bits (641), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 120/218 (55%), Positives = 159/218 (72%), Gaps = 1/218 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRL V   W SRW+A G ++   L EDLK+R+YL   LK A V +ILIER 
Sbjct: 1   MGQKINPTGFRLPVTHDWTSRWYATGRDFARTLAEDLKVRDYLGKKLKNASVGRILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++SARPG++IGKKG DIE ++ +L  +    +H+++ E+ +P+++A LIA SI
Sbjct: 61  AKNARITIFSARPGVVIGKKGEDIEVLKAELQKLMGVPVHVNIEEIRRPDLDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNGAE++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRQGALGIKIMSSGRLNGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVS-DSDSTIPA 217
            IDYG + A+T YG  G+KV+V   D    D  +  PA
Sbjct: 181 DIDYGFSEAQTTYGIIGVKVWVYKGDNTGKDVAAEAPA 218


>gi|285017326|ref|YP_003375037.1| 30s ribosomal protein s3 [Xanthomonas albilineans GPE PC73]
 gi|283472544|emb|CBA15049.1| probable 30s ribosomal protein s3 [Xanthomonas albilineans]
          Length = 241

 Score =  251 bits (641), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 116/203 (57%), Positives = 155/203 (76%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NP+  RLG++  WNS+W+A   E+   L  DLK+RE L+  L QAG++KILIER 
Sbjct: 1   MGHKVNPVGIRLGISKDWNSKWYANKGEFAGYLAADLKVREMLRKKLAQAGISKILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +Y+ARPG++IGK+G DIEK+RK++S M     H++V EV KPE++A L+A+SI
Sbjct: 61  AKTARVTIYTARPGVVIGKRGEDIEKLRKEVSEMMGVPAHINVTEVRKPELDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKR+V +AMR GA G+KV  SGRLNGAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIMFRRAMKRSVGNAMRLGALGIKVSVSGRLNGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVS 203
            I YG A A T YG+ G++V ++
Sbjct: 181 DIGYGFAEANTTYGTIGVQVTIN 203


>gi|167564411|ref|ZP_02357327.1| 30S ribosomal protein S3 [Burkholderia oklahomensis EO147]
 gi|167571557|ref|ZP_02364431.1| 30S ribosomal protein S3 [Burkholderia oklahomensis C6786]
          Length = 266

 Score =  251 bits (640), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 114/215 (53%), Positives = 159/215 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  + + A+L ED+ +REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNNNFAAMLQEDIGVREYLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++S+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITIFSSRPGVVIGKKGEDIELLKTELQRRMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDY T+ A+T YG  G+KV+V   D +  +D+ +
Sbjct: 181 DIDYATSEAKTTYGVIGVKVWVYKGDTLGRNDAPV 215


>gi|186477582|ref|YP_001859052.1| 30S ribosomal protein S3 [Burkholderia phymatum STM815]
 gi|226697676|sp|B2JI60|RS3_BURP8 RecName: Full=30S ribosomal protein S3
 gi|184194041|gb|ACC72006.1| ribosomal protein S3 [Burkholderia phymatum STM815]
          Length = 264

 Score =  251 bits (640), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 114/215 (53%), Positives = 159/215 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  + + A+L ED+ +REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNNNFAAMLQEDIGVREYLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++S+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITIFSSRPGVVIGKKGEDIELLKSELQKRMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDY T+ A+T YG  G+KV+V   D +  +D+ +
Sbjct: 181 DIDYATSEAKTTYGIIGVKVWVYKGDTLGRNDAPV 215


>gi|257095034|ref|YP_003168675.1| 30S ribosomal protein S3 [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047558|gb|ACV36746.1| ribosomal protein S3 [Candidatus Accumulibacter phosphatis clade
           IIA str. UW-1]
          Length = 282

 Score =  251 bits (640), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 114/202 (56%), Positives = 153/202 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W+SRW+A    +  +L+ED+K+REYL+  LK A V +ILIER 
Sbjct: 1   MGQKIHPAGFRLAVTRDWSSRWYANKKNFAGMLNEDIKVREYLKKKLKHASVGRILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN R+ ++SARPG++IGKKG +I+ +R  L  +    +H+S+ E+ KPE++A LIA SI
Sbjct: 61  AKNARVTIFSARPGVVIGKKGEEIDHLRVALQKIMGVPVHVSIEEIRKPELDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNGAE++R E Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGAEIARREWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV+V
Sbjct: 181 DIDYATSEALTTYGLIGVKVWV 202


>gi|39997943|ref|NP_953894.1| 30S ribosomal protein S3 [Geobacter sulfurreducens PCA]
 gi|61215646|sp|Q748Z4|RS3_GEOSL RecName: Full=30S ribosomal protein S3
 gi|39984888|gb|AAR36244.1| ribosomal protein S3 [Geobacter sulfurreducens PCA]
 gi|298506882|gb|ADI85605.1| ribosomal protein S3 [Geobacter sulfurreducens KN400]
          Length = 211

 Score =  251 bits (640), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 116/202 (57%), Positives = 159/202 (78%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+ FRLGV  TW+SRW+A  ++Y  LLHEDLK+R +L+  L  +GV+KI IER 
Sbjct: 1   MGQKVNPVGFRLGVIRTWDSRWYAE-ADYSKLLHEDLKLRNFLKKRLYNSGVSKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I +Y+ARPGLIIGKKG ++E ++K+L+ +T+ EI+L++ EV KPE++A L+A+++
Sbjct: 60  ANKAKINIYTARPGLIIGKKGAEVETLKKELAKLTDKEIYLNIQEVRKPELDAQLVAENV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK++V S+++FGA G+++  SGRL GAE+SRTE Y EGRVPL TLRA
Sbjct: 120 ALQLERRVAFRRAMKKSVTSSLKFGAKGIRITCSGRLGGAEMSRTEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A+T YG  G+KV +
Sbjct: 180 DIDYGFAEAKTTYGIIGVKVLI 201


>gi|53720815|ref|YP_109801.1| 30S ribosomal protein S3 [Burkholderia pseudomallei K96243]
 gi|53723848|ref|YP_104160.1| 30S ribosomal protein S3 [Burkholderia mallei ATCC 23344]
 gi|76811070|ref|YP_335134.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 1710b]
 gi|121601078|ref|YP_994450.1| 30S ribosomal protein S3 [Burkholderia mallei SAVP1]
 gi|124383473|ref|YP_001027901.1| 30S ribosomal protein S3 [Burkholderia mallei NCTC 10229]
 gi|126441331|ref|YP_001060744.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 668]
 gi|126450100|ref|YP_001082996.1| 30S ribosomal protein S3 [Burkholderia mallei NCTC 10247]
 gi|126452567|ref|YP_001068028.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 1106a]
 gi|134283153|ref|ZP_01769854.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 305]
 gi|167001693|ref|ZP_02267485.1| 30S ribosomal protein S3 [Burkholderia mallei PRL-20]
 gi|167721571|ref|ZP_02404807.1| 30S ribosomal protein S3 [Burkholderia pseudomallei DM98]
 gi|167740545|ref|ZP_02413319.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 14]
 gi|167817750|ref|ZP_02449430.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 91]
 gi|167826147|ref|ZP_02457618.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 9]
 gi|167847659|ref|ZP_02473167.1| 30S ribosomal protein S3 [Burkholderia pseudomallei B7210]
 gi|167896231|ref|ZP_02483633.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 7894]
 gi|167904613|ref|ZP_02491818.1| 30S ribosomal protein S3 [Burkholderia pseudomallei NCTC 13177]
 gi|167912878|ref|ZP_02499969.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 112]
 gi|167920838|ref|ZP_02507929.1| 30S ribosomal protein S3 [Burkholderia pseudomallei BCC215]
 gi|217424767|ref|ZP_03456264.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 576]
 gi|226198160|ref|ZP_03793731.1| 30S ribosomal protein S3 [Burkholderia pseudomallei Pakistan 9]
 gi|237814139|ref|YP_002898590.1| ribosomal protein S3 [Burkholderia pseudomallei MSHR346]
 gi|242315858|ref|ZP_04814874.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 1106b]
 gi|254174687|ref|ZP_04881348.1| 30S ribosomal protein S3 [Burkholderia mallei ATCC 10399]
 gi|254180345|ref|ZP_04886943.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 1655]
 gi|254190308|ref|ZP_04896816.1| 30S ribosomal protein S3 [Burkholderia pseudomallei Pasteur 52237]
 gi|254198497|ref|ZP_04904918.1| 30S ribosomal protein S3 [Burkholderia pseudomallei S13]
 gi|254201233|ref|ZP_04907597.1| 30S ribosomal protein S3 [Burkholderia mallei FMH]
 gi|254206574|ref|ZP_04912925.1| 30S ribosomal protein S3 [Burkholderia mallei JHU]
 gi|254259494|ref|ZP_04950548.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 1710a]
 gi|254300582|ref|ZP_04968027.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 406e]
 gi|254357112|ref|ZP_04973386.1| 30S ribosomal protein S3 [Burkholderia mallei 2002721280]
 gi|61215449|sp|Q62GL1|RS3_BURMA RecName: Full=30S ribosomal protein S3
 gi|61215462|sp|Q63Q17|RS3_BURPS RecName: Full=30S ribosomal protein S3
 gi|91207643|sp|Q3JMR9|RS3_BURP1 RecName: Full=30S ribosomal protein S3
 gi|152060851|sp|A3P0A7|RS3_BURP0 RecName: Full=30S ribosomal protein S3
 gi|189044957|sp|A3MRW0|RS3_BURM7 RecName: Full=30S ribosomal protein S3
 gi|189044958|sp|A2S7I2|RS3_BURM9 RecName: Full=30S ribosomal protein S3
 gi|189044959|sp|A1V897|RS3_BURMS RecName: Full=30S ribosomal protein S3
 gi|189044960|sp|A3NEH3|RS3_BURP6 RecName: Full=30S ribosomal protein S3
 gi|52211229|emb|CAH37218.1| 30S ribosomal protein S3 [Burkholderia pseudomallei K96243]
 gi|52427271|gb|AAU47864.1| ribosomal protein S3 [Burkholderia mallei ATCC 23344]
 gi|76580523|gb|ABA49998.1| ribosomal protein S3 [Burkholderia pseudomallei 1710b]
 gi|121229888|gb|ABM52406.1| 30S ribosomal protein S3 [Burkholderia mallei SAVP1]
 gi|124291493|gb|ABN00762.1| 30S ribosomal protein S3 [Burkholderia mallei NCTC 10229]
 gi|126220824|gb|ABN84330.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 668]
 gi|126226209|gb|ABN89749.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 1106a]
 gi|126242970|gb|ABO06063.1| 30S ribosomal protein S3 [Burkholderia mallei NCTC 10247]
 gi|134245348|gb|EBA45441.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 305]
 gi|147747127|gb|EDK54203.1| 30S ribosomal protein S3 [Burkholderia mallei FMH]
 gi|147752116|gb|EDK59182.1| 30S ribosomal protein S3 [Burkholderia mallei JHU]
 gi|148026176|gb|EDK84261.1| 30S ribosomal protein S3 [Burkholderia mallei 2002721280]
 gi|157810491|gb|EDO87661.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 406e]
 gi|157937984|gb|EDO93654.1| 30S ribosomal protein S3 [Burkholderia pseudomallei Pasteur 52237]
 gi|160695732|gb|EDP85702.1| 30S ribosomal protein S3 [Burkholderia mallei ATCC 10399]
 gi|169655237|gb|EDS87930.1| 30S ribosomal protein S3 [Burkholderia pseudomallei S13]
 gi|184210884|gb|EDU07927.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 1655]
 gi|217392223|gb|EEC32248.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 576]
 gi|225929680|gb|EEH25696.1| 30S ribosomal protein S3 [Burkholderia pseudomallei Pakistan 9]
 gi|237503075|gb|ACQ95393.1| ribosomal protein S3 [Burkholderia pseudomallei MSHR346]
 gi|242139097|gb|EES25499.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 1106b]
 gi|243062590|gb|EES44776.1| 30S ribosomal protein S3 [Burkholderia mallei PRL-20]
 gi|254218183|gb|EET07567.1| 30S ribosomal protein S3 [Burkholderia pseudomallei 1710a]
          Length = 266

 Score =  251 bits (640), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 114/215 (53%), Positives = 159/215 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  + + A+L ED+ +REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNNNFAAMLQEDIGVREYLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++S+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITIFSSRPGVVIGKKGEDIELLKTELQRRMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDY T+ A+T YG  G+KV+V   D +  +D+ +
Sbjct: 181 DIDYATSEAKTTYGIIGVKVWVYKGDTLGRNDAPV 215


>gi|332107872|gb|EGJ09096.1| 30S ribosomal protein S3 [Rubrivivax benzoatilyticus JA2]
          Length = 289

 Score =  251 bits (640), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 114/213 (53%), Positives = 159/213 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W SRWFA    +  +L EDL++R+YL+  LK A V++ILIER 
Sbjct: 1   MGQKIHPTGFRLSVTRAWGSRWFASNRNFAGMLAEDLQVRDYLKTKLKNAAVSRILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++SARPG++IGKKG DIE ++ +L+      + +++ EV KPE++A LIA SI
Sbjct: 61  AKNARITIFSARPGVVIGKKGEDIENLKAELTKRLGVPVAVNIEEVRKPEVDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TL+A
Sbjct: 121 TQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLKA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDS 213
            IDYG + A+T YG  G+KV+V   D +++ ++
Sbjct: 181 DIDYGFSEAKTTYGVIGVKVWVYRGDRLANGEA 213


>gi|118579125|ref|YP_900375.1| 30S ribosomal protein S3 [Pelobacter propionicus DSM 2379]
 gi|152060889|sp|A1ALU7|RS3_PELPD RecName: Full=30S ribosomal protein S3
 gi|118501835|gb|ABK98317.1| SSU ribosomal protein S3P [Pelobacter propionicus DSM 2379]
          Length = 210

 Score =  250 bits (639), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 118/202 (58%), Positives = 160/202 (79%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI FRLGV  +W+S+W+A  ++Y  LLHEDLKIR +L+  L  +G++KI IER 
Sbjct: 1   MGQKVNPIGFRLGVIKSWDSKWYAE-ADYAKLLHEDLKIRAFLKKRLYSSGISKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I +Y+ARPGLIIGKKG+++E I+K+LSN+T+ EI +++ EV KPE++A L+A+++
Sbjct: 60  ANKTKINIYTARPGLIIGKKGSEVETIKKELSNLTSKEIFINIIEVRKPELDAQLVAENV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK++V SA++FGA G+++  SGRL GAE+SRTE Y EGRVPL TLRA
Sbjct: 120 ALQLERRIAFRRAMKKSVTSALKFGAKGIRITCSGRLGGAEMSRTEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A+T YG  GIKV +
Sbjct: 180 DIDYGCAEAKTTYGLIGIKVLI 201


>gi|73542857|ref|YP_297377.1| 30S ribosomal protein S3 [Ralstonia eutropha JMP134]
 gi|91207835|sp|Q46WF0|RS3_RALEJ RecName: Full=30S ribosomal protein S3
 gi|72120270|gb|AAZ62533.1| SSU ribosomal protein S3P [Ralstonia eutropha JMP134]
          Length = 264

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 113/215 (52%), Positives = 160/215 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  +++  +L ED+++R++L+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNTKFAGMLKEDIEVRDFLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N RI +YS+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE +A LIA SI
Sbjct: 61  ARNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDYG + AET YG  G+KV+V   D +  +D+ +
Sbjct: 181 DIDYGFSEAETTYGIIGVKVWVYKGDHLGRNDAPV 215


>gi|161523435|ref|YP_001578447.1| 30S ribosomal protein S3 [Burkholderia multivorans ATCC 17616]
 gi|189351792|ref|YP_001947420.1| 30S ribosomal protein S3 [Burkholderia multivorans ATCC 17616]
 gi|221201571|ref|ZP_03574609.1| 30S ribosomal protein S3 [Burkholderia multivorans CGD2M]
 gi|221207354|ref|ZP_03580364.1| 30S ribosomal protein S3 [Burkholderia multivorans CGD2]
 gi|221213492|ref|ZP_03586467.1| 30S ribosomal protein S3 [Burkholderia multivorans CGD1]
 gi|254253511|ref|ZP_04946829.1| 30S ribosomal protein S3 [Burkholderia dolosa AUO158]
 gi|226697675|sp|A9ADJ9|RS3_BURM1 RecName: Full=30S ribosomal protein S3
 gi|124896120|gb|EAY70000.1| 30S ribosomal protein S3 [Burkholderia dolosa AUO158]
 gi|160340864|gb|ABX13950.1| ribosomal protein S3 [Burkholderia multivorans ATCC 17616]
 gi|189335814|dbj|BAG44884.1| small subunit ribosomal protein S3 [Burkholderia multivorans ATCC
           17616]
 gi|221166944|gb|EED99415.1| 30S ribosomal protein S3 [Burkholderia multivorans CGD1]
 gi|221172942|gb|EEE05379.1| 30S ribosomal protein S3 [Burkholderia multivorans CGD2]
 gi|221178387|gb|EEE10796.1| 30S ribosomal protein S3 [Burkholderia multivorans CGD2M]
          Length = 266

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 114/215 (53%), Positives = 159/215 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  + + A+L ED+ +REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNNNFAAMLQEDIGVREYLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++S+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITIFSSRPGVVIGKKGEDIELLKTELQRRMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDY T+ A+T YG  G+KV+V   D +  +D+ +
Sbjct: 181 DIDYATSEAKTTYGIIGVKVWVYKGDTLGRNDAPV 215


>gi|297717886|gb|ADI50086.1| SSU ribosomal protein S3p [Candidatus Odyssella thessalonicensis
           L13]
          Length = 225

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 115/202 (56%), Positives = 161/202 (79%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N  W+SRWF++  +Y   LH+DL+IR +++ +L QAGVAK++IER 
Sbjct: 1   MGQKVNPVGLRLGINKLWDSRWFSK-KDYAKNLHQDLEIRRFVEKNLAQAGVAKVVIERL 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +++ARPG++IGKKG DI+K+RKKLS++ N+++ +++ EV KPEI+A LIA++I
Sbjct: 60  AKKARLTIHTARPGVLIGKKGADIDKLRKKLSDIANTDVTINLVEVRKPEIDAKLIAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQ+ERRV FRRAMKRA+QS++R GA G++V  SGRL GAE++R E Y EGRVPL TLR+
Sbjct: 120 AQQIERRVSFRRAMKRAMQSSLRLGAQGIRVNCSGRLGGAEIARMEWYREGRVPLHTLRS 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            +DY    A+T YG  GIKV+V
Sbjct: 180 DVDYALGEAKTTYGIIGIKVWV 201


>gi|167587766|ref|ZP_02380154.1| 30S ribosomal protein S3 [Burkholderia ubonensis Bu]
          Length = 266

 Score =  249 bits (637), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 114/215 (53%), Positives = 159/215 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  + + A+L ED+ +REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNNNFAAMLKEDIGVREYLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++S+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITIFSSRPGVVIGKKGEDIELLKTELQRRMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDY T+ A+T YG  G+KV+V   D +  +D+ +
Sbjct: 181 DIDYATSEAKTTYGIIGVKVWVYKGDTLGRNDAPV 215


>gi|113869425|ref|YP_727914.1| 30S ribosomal protein S3 [Ralstonia eutropha H16]
 gi|194291016|ref|YP_002006923.1| 30S ribosomal protein s3 [Cupriavidus taiwanensis LMG 19424]
 gi|122946539|sp|Q0K625|RS3_RALEH RecName: Full=30S ribosomal protein S3
 gi|226697693|sp|B3R7R7|RS3_CUPTR RecName: Full=30S ribosomal protein S3
 gi|113528201|emb|CAJ94546.1| SSU ribosomal protein S3 [Ralstonia eutropha H16]
 gi|193224851|emb|CAQ70862.1| 30S ribosomal subunit protein S3 [Cupriavidus taiwanensis LMG
           19424]
          Length = 265

 Score =  249 bits (635), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 112/215 (52%), Positives = 160/215 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  +++  +L ED+++R++L+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYASNTKFAGMLKEDIEVRDFLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N RI +YS+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE +A LIA SI
Sbjct: 61  ARNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDYG + AET YG  G+KV+V   D +  +D+ +
Sbjct: 181 DIDYGFSEAETTYGIIGVKVWVYKGDHLGRNDAPV 215


>gi|21230370|ref|NP_636287.1| 30S ribosomal protein S3 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769636|ref|YP_244398.1| 30S ribosomal protein S3 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188992848|ref|YP_001904858.1| 30S ribosomal protein S3 [Xanthomonas campestris pv. campestris
           str. B100]
 gi|27734500|sp|Q8PC44|RS3_XANCP RecName: Full=30S ribosomal protein S3
 gi|81304409|sp|Q4URE5|RS3_XANC8 RecName: Full=30S ribosomal protein S3
 gi|21111926|gb|AAM40211.1| 30S ribosomal protein S3 [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66574968|gb|AAY50378.1| 30S ribosomal protein S3 [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167734608|emb|CAP52818.1| 30S ribosomal protein S3 [Xanthomonas campestris pv. campestris]
          Length = 244

 Score =  249 bits (635), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 119/210 (56%), Positives = 159/210 (75%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K++P   RLG+   WNS+W+A  +++ A L  DLK+RE L+  L QAG++KILIER 
Sbjct: 1   MGHKVHPTGIRLGIAKDWNSKWYASKADFAAYLAADLKVREMLRKKLAQAGISKILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +++ARPG++IGK+G DIEK+RK++S M     H++V EV KPE++A L+A+SI
Sbjct: 61  AKTARVTIHTARPGVVIGKRGEDIEKLRKEVSEMMGVPAHINVTEVRKPELDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKR+V +AMR GA G+KV  +GRLNGAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIMFRRAMKRSVGNAMRLGALGIKVNVAGRLNGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            IDYG A A T YG  GIKV++  + EV D
Sbjct: 181 DIDYGFAEASTTYGIIGIKVWI-YKGEVFD 209


>gi|30248424|ref|NP_840494.1| 30S ribosomal protein S3 [Nitrosomonas europaea ATCC 19718]
 gi|61215742|sp|Q820R1|RS3_NITEU RecName: Full=30S ribosomal protein S3
 gi|30138310|emb|CAD84318.1| Ribosomal protein S3:Type 2 KH domain:KH domain [Nitrosomonas
           europaea ATCC 19718]
          Length = 215

 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 111/202 (54%), Positives = 152/202 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRL V   W+SRW+    ++   L+ED+ +R+YLQ  L  A V  I+IER 
Sbjct: 1   MGQKINPTGFRLSVLKNWSSRWYTNTKKFSDFLNEDISVRQYLQKKLAHASVGSIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN +I ++++RPG++IGKKG DIE +R+ +  + N  +H+++ E+ KPEI+A LIA SI
Sbjct: 61  SKNAKITIHTSRPGVVIGKKGEDIEILRRNVEKLMNVPVHINIEEIRKPEIDAQLIAASI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMKRAIQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            +DYGT+ A T YG  G+KV+V
Sbjct: 181 EVDYGTSEARTTYGIIGVKVWV 202


>gi|78221852|ref|YP_383599.1| 30S ribosomal protein S3 [Geobacter metallireducens GS-15]
 gi|91207656|sp|Q39Y00|RS3_GEOMG RecName: Full=30S ribosomal protein S3
 gi|78193107|gb|ABB30874.1| SSU ribosomal protein S3P [Geobacter metallireducens GS-15]
          Length = 211

 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 115/202 (56%), Positives = 159/202 (78%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI FRLGV  TW+SRW+A  ++Y  LLHED+K+R +L+  L  +GV+KI IER 
Sbjct: 1   MGQKVNPIGFRLGVIRTWDSRWYAE-ADYAKLLHEDIKLRNFLKKRLFNSGVSKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I +++ARPGLIIGKKG ++E ++K+L+ +T+ EI+L++ EV KPE++A L+++++
Sbjct: 60  ASKAKINIFTARPGLIIGKKGAEVETLKKELAKLTDKEIYLNIQEVRKPELDAQLVSENV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK++V SA++FGA G+++  SGRL GAE+SRTE Y EGRVPL TLRA
Sbjct: 120 ALQLERRVAFRRAMKKSVTSALKFGAKGIRITCSGRLGGAEMSRTEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A+T YG  G+KV +
Sbjct: 180 DIDYGFAEAKTTYGIIGVKVLI 201


>gi|58583200|ref|YP_202216.1| 30S ribosomal protein S3 [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84625038|ref|YP_452410.1| 30S ribosomal protein S3 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|166710837|ref|ZP_02242044.1| 30S ribosomal protein S3 [Xanthomonas oryzae pv. oryzicola BLS256]
 gi|188575496|ref|YP_001912425.1| 30S ribosomal protein S3 [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|289665143|ref|ZP_06486724.1| 30S ribosomal protein S3 [Xanthomonas campestris pv. vasculorum
           NCPPB702]
 gi|325916493|ref|ZP_08178762.1| SSU ribosomal protein S3P [Xanthomonas vesicatoria ATCC 35937]
 gi|75508102|sp|Q5GWU0|RS3_XANOR RecName: Full=30S ribosomal protein S3
 gi|123752714|sp|Q2NZZ1|RS3_XANOM RecName: Full=30S ribosomal protein S3
 gi|58427794|gb|AAW76831.1| 30S ribosomal protein S3 [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84368978|dbj|BAE70136.1| 30S ribosomal protein S3 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519948|gb|ACD57893.1| ribosomal protein S3 [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|325537282|gb|EGD09009.1| SSU ribosomal protein S3P [Xanthomonas vesicatoria ATCC 35937]
          Length = 244

 Score =  248 bits (634), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 119/210 (56%), Positives = 159/210 (75%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K++P   RLG++  WNS+W+A   ++ A L  DLK+RE L+  L QAGV+KILIER 
Sbjct: 1   MGHKVHPTGIRLGISKDWNSKWYANKGDFAAYLAADLKVREMLRKKLAQAGVSKILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +++ARPG++IGK+G DIEK+RK++S +     H++V EV KPE++A L+A+SI
Sbjct: 61  AKTARVTIHTARPGVVIGKRGEDIEKLRKEVSELMGVPAHINVTEVRKPELDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKR+V +AMR GA G+KV  +GRLNGAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIMFRRAMKRSVGNAMRLGALGIKVNVAGRLNGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            IDYG A A T YG  GIKV++  + EV D
Sbjct: 181 DIDYGFAEASTTYGIIGIKVWI-YKGEVFD 209


>gi|148263146|ref|YP_001229852.1| 30S ribosomal protein S3 [Geobacter uraniireducens Rf4]
 gi|189045010|sp|A5GAX1|RS3_GEOUR RecName: Full=30S ribosomal protein S3
 gi|146396646|gb|ABQ25279.1| SSU ribosomal protein S3P [Geobacter uraniireducens Rf4]
          Length = 210

 Score =  248 bits (634), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 115/202 (56%), Positives = 159/202 (78%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI FRLGV  TW+S+W+A   +Y  LLHEDLK+R +L+  L  +GV+KI IER 
Sbjct: 1   MGQKVNPIGFRLGVIKTWDSKWYAE-KDYAKLLHEDLKLRSFLKKRLYHSGVSKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I +++ARPGLIIGKKG+++E ++K+L+ +T+ E++L++ EV KPE++A L+A++I
Sbjct: 60  AGKAKINIFTARPGLIIGKKGSEVETLKKELAKLTDKEVYLNIQEVRKPELDAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK++V S+++FGA G+++  SGRL GAE+SRTE Y EGRVPL TLRA
Sbjct: 120 ALQLERRVAFRRAMKKSVTSSLKFGAKGIRITCSGRLGGAEMSRTEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A+T YG  G+KV +
Sbjct: 180 DIDYGFAEAKTTYGIIGVKVLL 201


>gi|237747371|ref|ZP_04577851.1| small subunit ribosomal protein S3 [Oxalobacter formigenes HOxBLS]
 gi|229378722|gb|EEO28813.1| small subunit ribosomal protein S3 [Oxalobacter formigenes HOxBLS]
          Length = 282

 Score =  248 bits (634), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 115/213 (53%), Positives = 158/213 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W+SRW+A  + +  +L+EDLK R YL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVARNWSSRWYAGNTNFAGMLNEDLKARAYLKKKLKNASVGQVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN R  +YS+RPG++IGKKG DIE ++  LS +    +H+++ EV KPEI+A LIA SI
Sbjct: 61  AKNARFTIYSSRPGVVIGKKGEDIEVLKSDLSRIMGVPVHVNIEEVRKPEIHAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAM+RA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMRRAMQNAMRLGAVGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDS 213
            IDYG + A+T YG  G+KV+V   D + + ++
Sbjct: 181 DIDYGFSEAQTTYGIIGVKVWVYKGDRLENGEA 213


>gi|78046561|ref|YP_362736.1| 30S ribosomal protein S3 [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325925381|ref|ZP_08186783.1| SSU ribosomal protein S3P [Xanthomonas perforans 91-118]
 gi|91207850|sp|Q3BWX7|RS3_XANC5 RecName: Full=30S ribosomal protein S3
 gi|78034991|emb|CAJ22636.1| 30S ribosomal protein S3 [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325544259|gb|EGD15640.1| SSU ribosomal protein S3P [Xanthomonas perforans 91-118]
          Length = 244

 Score =  248 bits (634), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 119/210 (56%), Positives = 159/210 (75%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K++P   RLG+   WNS+W+A  +E+ + L  DLK+RE L+  L QAGV+KILIER 
Sbjct: 1   MGHKVHPTGIRLGIAKDWNSKWYANKAEFASYLAADLKVREMLRKKLAQAGVSKILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +++ARPG++IGK+G DIEK+RK++S +     H++V EV KPE++A L+A+SI
Sbjct: 61  AKTARVTIHTARPGVVIGKRGEDIEKLRKEVSQLMGVPAHINVTEVRKPELDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKR+V +AMR GA G+KV  +GRLNGAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIMFRRAMKRSVGNAMRLGALGIKVNVAGRLNGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            IDYG A A T YG  GIKV++  + EV D
Sbjct: 181 DIDYGFAEASTTYGIIGIKVWI-YKGEVFD 209


>gi|21241743|ref|NP_641325.1| 30S ribosomal protein S3 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|294627847|ref|ZP_06706426.1| 30S ribosomal protein S3 [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294664000|ref|ZP_06729414.1| 30S ribosomal protein S3 [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|27734501|sp|Q8PNR9|RS3_XANAC RecName: Full=30S ribosomal protein S3
 gi|21107114|gb|AAM35861.1| 30S ribosomal protein S3 [Xanthomonas axonopodis pv. citri str.
           306]
 gi|292597761|gb|EFF41919.1| 30S ribosomal protein S3 [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292606229|gb|EFF49466.1| 30S ribosomal protein S3 [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 244

 Score =  248 bits (633), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 119/210 (56%), Positives = 159/210 (75%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K++P   RLG+   WNS+W+A  +E+ + L  DLK+RE L+  L QAGV+KILIER 
Sbjct: 1   MGHKVHPTGIRLGIAKDWNSKWYANKAEFASYLAADLKVREMLRKKLAQAGVSKILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +++ARPG++IGK+G DIEK+RK++S +     H++V EV KPE++A L+A+SI
Sbjct: 61  AKTARVTIHTARPGVVIGKRGEDIEKLRKEVSELMGVPAHINVTEVRKPELDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKR+V +AMR GA G+KV  +GRLNGAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIMFRRAMKRSVGNAMRLGALGIKVNVAGRLNGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            IDYG A A T YG  GIKV++  + EV D
Sbjct: 181 DIDYGFAEASTTYGIIGIKVWI-YKGEVFD 209


>gi|329118604|ref|ZP_08247308.1| 30S ribosomal protein S3 [Neisseria bacilliformis ATCC BAA-1200]
 gi|327465339|gb|EGF11620.1| 30S ribosomal protein S3 [Neisseria bacilliformis ATCC BAA-1200]
          Length = 231

 Score =  248 bits (633), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 111/202 (54%), Positives = 155/202 (76%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL VN  W+S+WFA+  ++  +L +D+ +REYL+  L  A V ++LIER 
Sbjct: 1   MGQKIHPTGFRLAVNKNWSSKWFAKTGDFSNVLKQDIDVREYLRKRLANASVGRVLIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ RI +YSARPG++IG+KG DIE +++ L N+    +H+++ E+ KPE++A +IA  I
Sbjct: 61  AKSARITIYSARPGIVIGRKGEDIEVLKQDLQNLLGVPVHVNIEEIRKPELDAQIIADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV FRRAMKRA+Q+AMR GA GVK++ SGRLNGA+++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVQFRRAMKRAMQNAMRVGAKGVKIMTSGRLNGADIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
           ++DY T+ A T YG  G+KV+V
Sbjct: 181 NVDYATSEAHTTYGVIGLKVWV 202


>gi|197117329|ref|YP_002137756.1| 30S ribosomal protein S3 [Geobacter bemidjiensis Bem]
 gi|322418370|ref|YP_004197593.1| 30S ribosomal protein S3 [Geobacter sp. M18]
 gi|226697716|sp|B5EFQ6|RS3_GEOBB RecName: Full=30S ribosomal protein S3
 gi|197086689|gb|ACH37960.1| ribosomal protein S3 [Geobacter bemidjiensis Bem]
 gi|320124757|gb|ADW12317.1| ribosomal protein S3 [Geobacter sp. M18]
          Length = 211

 Score =  248 bits (633), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 113/202 (55%), Positives = 158/202 (78%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI FRLGV  TW+S+W+A   +Y  LLHEDLK+R +L+  L  +GV+KI IER 
Sbjct: 1   MGQKVNPIGFRLGVIKTWDSKWYAE-KDYAKLLHEDLKLRNFLKKRLYHSGVSKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I +++ARPGLIIGKKG+++E ++K+L+ +T+ E++L++ EV KPE++A L+A+++
Sbjct: 60  AGKAKINIFTARPGLIIGKKGSEVETLKKELAKLTDKEVYLNIQEVRKPELDAQLVAENV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK++V S ++FGA G+++  SGRL GAE+SRTE Y EGRVPL TLRA
Sbjct: 120 AMQLERRIAFRRAMKKSVTSTLKFGAKGIRITCSGRLGGAEMSRTEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A+T YG  G+KV +
Sbjct: 180 DIDYGFAEAKTTYGIIGVKVLL 201


>gi|222873445|gb|EEF10576.1| predicted protein [Populus trichocarpa]
          Length = 206

 Score =  248 bits (632), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 112/202 (55%), Positives = 154/202 (76%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  +++  +L ED+++RE+L+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNTKFAGMLKEDIEVREFLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N RI +YS+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE +A LIA SI
Sbjct: 61  ARNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG + AET YG  G+KV+V
Sbjct: 181 DIDYGFSEAETTYGIIGVKVWV 202


>gi|319787919|ref|YP_004147394.1| ribosomal protein S3 [Pseudoxanthomonas suwonensis 11-1]
 gi|317466431|gb|ADV28163.1| ribosomal protein S3 [Pseudoxanthomonas suwonensis 11-1]
          Length = 242

 Score =  247 bits (631), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 119/210 (56%), Positives = 158/210 (75%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K++P   RLG+   WNS+W+A   EY   L  DLK+R+ L+  L QAG+++ILIER 
Sbjct: 1   MGHKVHPTGIRLGIAKDWNSKWYAGKGEYADYLAADLKVRKMLRKKLAQAGISRILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +++ARPG++IGK+G DIEK+RK++S M     H++V+EV KPE++A L+A+SI
Sbjct: 61  AKTARVTIHTARPGVVIGKRGEDIEKLRKEVSEMMGVPAHINVSEVRKPELDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKRAV +AMR GA G+KV  +GRLNGAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIMFRRAMKRAVGNAMRLGALGIKVNVAGRLNGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            IDYG A A T YG  GIKV+V  + E+ D
Sbjct: 181 DIDYGFAEAHTTYGVIGIKVWV-YKGEIFD 209


>gi|253701916|ref|YP_003023105.1| 30S ribosomal protein S3 [Geobacter sp. M21]
 gi|259495249|sp|C6E4Q1|RS3_GEOSM RecName: Full=30S ribosomal protein S3
 gi|251776766|gb|ACT19347.1| ribosomal protein S3 [Geobacter sp. M21]
          Length = 211

 Score =  247 bits (631), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 113/202 (55%), Positives = 157/202 (77%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI FRLGV  TW+S+W+A   +Y  LLHEDLK+R +L+  L  +GV+KI IER 
Sbjct: 1   MGQKVNPIGFRLGVIKTWDSKWYAE-KDYAKLLHEDLKLRNFLKKRLYHSGVSKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I +++ARPGLIIGKKG+++E ++K+L+ +T  E++L++ EV KPE++A L+A+++
Sbjct: 60  AGKAKINIFTARPGLIIGKKGSEVETLKKELAKLTEKEVYLNIQEVRKPELDAQLVAENV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK++V S ++FGA G+++  SGRL GAE+SRTE Y EGRVPL TLRA
Sbjct: 120 AMQLERRIAFRRAMKKSVTSTLKFGAKGIRITCSGRLGGAEMSRTEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A+T YG  G+KV +
Sbjct: 180 DIDYGFAEAKTTYGIIGVKVLL 201


>gi|222056699|ref|YP_002539061.1| ribosomal protein S3 [Geobacter sp. FRC-32]
 gi|254764532|sp|B9M6H2|RS3_GEOSF RecName: Full=30S ribosomal protein S3
 gi|221565988|gb|ACM21960.1| ribosomal protein S3 [Geobacter sp. FRC-32]
          Length = 210

 Score =  247 bits (630), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 113/202 (55%), Positives = 159/202 (78%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI FRLGV  TW+S+W+A   ++  LLHEDLK++ +L+  L  +GV+KI IER 
Sbjct: 1   MGQKVNPIGFRLGVIKTWDSKWYAE-KDFAKLLHEDLKLKSFLKKRLYHSGVSKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I +Y+ARPGLIIGKKG+++E ++K+L+ +T+ E++L++ EV KPE++A L++++I
Sbjct: 60  AGKAKINIYTARPGLIIGKKGSEVETLKKELAKLTDKEVYLNIQEVRKPELDAQLVSENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK++V S+++FGA G+++  SGRL GAE+SRTE Y EGRVPL TLRA
Sbjct: 120 ALQLERRVAFRRAMKKSVTSSLKFGAKGIRITCSGRLGGAEMSRTEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A+T YG  G+KV +
Sbjct: 180 DIDYGFAEAKTTYGIIGVKVLI 201


>gi|237749521|ref|ZP_04580001.1| small subunit ribosomal protein S3 [Oxalobacter formigenes OXCC13]
 gi|229380883|gb|EEO30974.1| small subunit ribosomal protein S3 [Oxalobacter formigenes OXCC13]
          Length = 282

 Score =  247 bits (630), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 117/224 (52%), Positives = 161/224 (71%), Gaps = 3/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W+SRW+A  + +  +L+EDLK R YL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVARNWSSRWYAGNTNFAGMLNEDLKARAYLKKKLKNASVGQVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN R  +YS+RPG++IGKKG DIE ++  LS +    +H+++ EV KPEI+A LIA SI
Sbjct: 61  AKNARFTIYSSRPGVVIGKKGEDIEVLKSDLSKIMGVPVHVNIEEVRKPEIHAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+R++FRRAM+RA+Q+AMR GA G+K+++SGRLNG E++R E Y EGRVPL TLRA
Sbjct: 121 TQQLEKRIMFRRAMRRAMQNAMRLGAVGIKIMSSGRLNGIEIARKEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDST---IPAAEHR 221
            IDYG + A+T YG  G+KV+V   D + + ++     PA E +
Sbjct: 181 DIDYGFSEAQTTYGIIGVKVWVYKGDRLENGEAPKIEAPAEEDK 224


>gi|254487466|ref|ZP_05100671.1| ribosomal protein S3 [Roseobacter sp. GAI101]
 gi|214044335|gb|EEB84973.1| ribosomal protein S3 [Roseobacter sp. GAI101]
          Length = 226

 Score =  247 bits (630), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 121/212 (57%), Positives = 158/212 (74%), Gaps = 4/212 (1%)

Query: 10  FRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTHKNCRIIVY 69
            RL VN TW+SRW+A   +YG LL EDL IR +++    QAG+A+++IER HK CR+ ++
Sbjct: 1   MRLQVNRTWDSRWYADTKDYGDLLLEDLAIRAFIKKECAQAGIARVIIERPHKKCRVTIH 60

Query: 70  SARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSIAQQLERRVV 129
           +ARPG+IIGKKG DIE +R K++ MT S++HL++ EV KPE++A L+ +SIAQQLERRV 
Sbjct: 61  TARPGVIIGKKGADIEGLRLKIAKMTKSDLHLNIVEVRKPELDAALVGESIAQQLERRVS 120

Query: 130 FRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRAHIDYGTAVA 189
           FRRAMKRAVQ+AMR GA G++V  +GRL GAE++RTE Y EGRVPL TLRA IDY    A
Sbjct: 121 FRRAMKRAVQNAMRMGALGIRVNVAGRLGGAEIARTEWYREGRVPLHTLRADIDYAHVEA 180

Query: 190 ETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            TAYG  GIK ++  + E+ + D   PAA  R
Sbjct: 181 MTAYGIIGIKTWI-FKGEIMEHD---PAARDR 208


>gi|319942179|ref|ZP_08016495.1| 30S ribosomal protein S3 [Sutterella wadsworthensis 3_1_45B]
 gi|319804232|gb|EFW01124.1| 30S ribosomal protein S3 [Sutterella wadsworthensis 3_1_45B]
          Length = 260

 Score =  247 bits (630), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 113/202 (55%), Positives = 151/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRL V   W SRW+A G +Y   L EDLK+R +L   L+ A VA++LIER 
Sbjct: 1   MGQKINPTGFRLPVTRNWTSRWYANGRDYPNTLQEDLKVRSFLLKKLRNASVARVLIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
             N RI ++++RPG++IGK+G DIE ++ ++  M    +H+++ EV +PE++A LIA  I
Sbjct: 61  ANNARITIFTSRPGIVIGKQGADIEALKTEVQKMMGVPVHVNIEEVRRPELDAQLIADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLE+RV+FRRAMKRA+Q+AMR GA G+KV +SGRLNGA+++R E Y EGRVPLQTLRA
Sbjct: 121 TQQLEKRVMFRRAMKRAMQNAMRLGALGIKVQSSGRLNGADIARDEWYREGRVPLQTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
           +IDY T+ A T YG  G+KV+V
Sbjct: 181 NIDYATSEAHTTYGVVGVKVWV 202


>gi|325921487|ref|ZP_08183342.1| SSU ribosomal protein S3P [Xanthomonas gardneri ATCC 19865]
 gi|325548034|gb|EGD19033.1| SSU ribosomal protein S3P [Xanthomonas gardneri ATCC 19865]
          Length = 244

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 118/210 (56%), Positives = 158/210 (75%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K++P   RLG+   WNS+W+A  +++   L  DLK+RE L+  L QAG++KILIER 
Sbjct: 1   MGHKVHPTGIRLGIAKDWNSKWYANKADFAGYLAADLKVREMLRKKLAQAGISKILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +++ARPG++IGK+G DIEK+RK++S M     H++V EV KPE++A L+A+SI
Sbjct: 61  AKTARVTIHTARPGVVIGKRGEDIEKLRKEVSAMMGVPAHINVTEVRKPELDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKR+V +AMR GA G+KV  +GRLNGAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIMFRRAMKRSVGNAMRLGALGIKVNVAGRLNGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            IDYG A A T YG  GIKV++  + EV D
Sbjct: 181 DIDYGFAEASTTYGIIGIKVWI-YKGEVFD 209


>gi|289669350|ref|ZP_06490425.1| 30S ribosomal protein S3 [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 244

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 119/210 (56%), Positives = 158/210 (75%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K++P   RLG++  WNS+W+A   ++ A L  DLK+RE L+  L QAGV+KILIER 
Sbjct: 1   MGHKVHPTGIRLGISKDWNSKWYANKGDFAAYLAADLKVREMLRKKLAQAGVSKILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +++ARPG++IGK+G DIEK+RK++S +     H++V EV KPE++A L+A+SI
Sbjct: 61  AKTARVTIHTARPGVVIGKRGEDIEKLRKEVSELMGVPAHINVTEVRKPELDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKR+V +AMR GA G+KV  +GRLNGAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIMFRRAMKRSVGNAMRLGALGIKVNVAGRLNGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            IDYG A A T YG  GIKV +  + EV D
Sbjct: 181 DIDYGFAEASTTYGIIGIKVLI-YKGEVFD 209


>gi|291613242|ref|YP_003523399.1| ribosomal protein S3 [Sideroxydans lithotrophicus ES-1]
 gi|291583354|gb|ADE11012.1| ribosomal protein S3 [Sideroxydans lithotrophicus ES-1]
          Length = 238

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 117/210 (55%), Positives = 158/210 (75%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+PI FRL V   W S+W++    +  LL +D+++R+YL+  L  AGV+KI+IER 
Sbjct: 1   MGQKIHPIGFRLSVQKNWTSKWYSNSKHFSELLLKDIEVRDYLKKKLAGAGVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSN-MTNSEIHLSVNEVPKPEINATLIAQS 119
            KN +I +Y+ARPG++IGKKG DIE +R +L   M   ++ L++ EV KPE++A LIA S
Sbjct: 61  AKNAKITIYTARPGVVIGKKGEDIESLRNELKKRMGLPDVGLNIEEVRKPEVDAQLIADS 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           I QQLE+R++FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLR
Sbjct: 121 ITQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLR 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYVSLRDEVS 209
           A IDYGT+ A T YG  G+KV+V   D V+
Sbjct: 181 ADIDYGTSEALTTYGLIGVKVWVYKGDHVA 210


>gi|251772496|gb|EES53062.1| ribosomal protein S3 [Leptospirillum ferrodiazotrophum]
          Length = 229

 Score =  246 bits (629), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 171/224 (76%), Gaps = 4/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG   TWNSRW+A+ S Y   LHEDL+IR+Y++  L QAG+++I IERT
Sbjct: 1   MGQKVHPTGFRLGYIKTWNSRWYAKKS-YVEWLHEDLQIRKYIKKKLYQAGISRIDIERT 59

Query: 61  HKN--CRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQ 118
            K+   R++++SA+PGLIIGKKG++IEK++  L+    SE+ +S+ EV KPE++A L+A+
Sbjct: 60  GKDSITRVLIHSAKPGLIIGKKGSEIEKLKSDLAKSIKSELSISIKEVKKPEVDAQLVAE 119

Query: 119 SIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTL 178
           SIA QLE+R+ FRRAMK++V SA+RFGA GVK+  +GRL GAE++RTE Y EGRVPLQT+
Sbjct: 120 SIASQLEKRISFRRAMKKSVASALRFGALGVKICCAGRLGGAEIARTEWYREGRVPLQTI 179

Query: 179 RAHIDYGTAVAETAYGSCGIKVYVSLRDEV-SDSDSTIPAAEHR 221
           RA ID G A + T +G  GIKV+V + D + S+ ++++ AA  +
Sbjct: 180 RADIDLGLAESYTTFGKIGIKVWVYMGDHLPSNPEASLDAASDK 223


>gi|88812751|ref|ZP_01127997.1| ribosomal protein S3 [Nitrococcus mobilis Nb-231]
 gi|88789989|gb|EAR21110.1| ribosomal protein S3 [Nitrococcus mobilis Nb-231]
          Length = 224

 Score =  246 bits (627), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 113/221 (51%), Positives = 162/221 (73%), Gaps = 2/221 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K++P  FRLG+   W S W+A  + +G  L+ DLK+R +++  L  A ++KI IER 
Sbjct: 1   MGHKVHPTGFRLGITEEWRSMWYADSANFGDYLNTDLKVRNFIKHKLAHASISKIKIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN  I +Y+ARPG++IGKKG DIE +R +L+ M +  +H+++ E+ KPE++A L+A+++
Sbjct: 61  AKNALITIYTARPGIVIGKKGADIEALRVRLARMMDIPVHVNIEEIRKPELDAQLVAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKRAV +AMR G  G+++  SGRLNGAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRIMFRRAMKRAVGNAMRLGGQGIRIQVSGRLNGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDYG A A+T YG  G+KV++  + E+ D+DS +P +  R
Sbjct: 181 DIDYGLAHAKTTYGVIGVKVWI-FKGEILDTDS-VPGSTAR 219


>gi|238563917|ref|ZP_00438025.2| 30S ribosomal protein S3 [Burkholderia mallei GB8 horse 4]
 gi|238519670|gb|EEP83139.1| 30S ribosomal protein S3 [Burkholderia mallei GB8 horse 4]
          Length = 202

 Score =  245 bits (625), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 111/201 (55%), Positives = 152/201 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V+  W SRW+A  + + A+L ED+ +REYL+  LK A V +++IER 
Sbjct: 1   MGQKIHPTGFRLAVSRNWASRWYANNNNFAAMLQEDIGVREYLKKKLKNASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN RI ++S+RPG++IGKKG DIE ++ +L       +H+++ E+ KPE +A LIA SI
Sbjct: 61  AKNARITIFSSRPGVVIGKKGEDIELLKTELQRRMGVPVHVNIEEIRKPETDAQLIADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR++FRRAMKRA+Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVY 201
            IDY T+ A+T YG  G+KV+
Sbjct: 181 DIDYATSEAKTTYGIIGVKVW 201


>gi|294789229|ref|ZP_06754468.1| ribosomal protein S3 [Simonsiella muelleri ATCC 29453]
 gi|294482970|gb|EFG30658.1| ribosomal protein S3 [Simonsiella muelleri ATCC 29453]
          Length = 233

 Score =  244 bits (624), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 155/202 (76%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P+ FRL VN  W+S+WFA+ +E+ A+L +D+ +REYL   L  A V +++IER 
Sbjct: 1   MGQKIHPVGFRLAVNKDWSSKWFAKSTEFAAVLKQDIDVREYLSKRLANASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ RI +++ARPG++IG+KG DIE +++ L  +    +H+++ E+ KPE++A LIA  I
Sbjct: 61  AKSARITIHTARPGVVIGQKGADIEVLKRDLEKLLGVAVHVNIEEIRKPELDAQLIADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV FRRAMKRA+Q+AMR GA G+K++ SGRLNGA+++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVQFRRAMKRAMQNAMRAGAKGIKIMTSGRLNGADIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            +DY T+ A T YG  G+KV+V
Sbjct: 181 DVDYATSEALTTYGIIGLKVWV 202


>gi|114319625|ref|YP_741308.1| 30S ribosomal protein S3 [Alkalilimnicola ehrlichii MLHE-1]
 gi|122312451|sp|Q0ABG9|RS3_ALHEH RecName: Full=30S ribosomal protein S3
 gi|114226019|gb|ABI55818.1| SSU ribosomal protein S3P [Alkalilimnicola ehrlichii MLHE-1]
          Length = 226

 Score =  243 bits (621), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 114/218 (52%), Positives = 162/218 (74%), Gaps = 2/218 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K++P  FRLGV   W S W+A  S +G  L+ DL++R +++  L  A V++I IER 
Sbjct: 1   MGHKVHPTGFRLGVTEDWRSMWYAGSSNFGEYLNTDLQVRNFIRKKLAHASVSRIRIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN  + +++ARPG++IGKKG DI+++R +++ +    +H+++ E+ KPE++A L+A+S+
Sbjct: 61  AKNALVTIHTARPGIVIGKKGEDIDRLRGEVARLMGVPVHINIEEIRKPELDAKLVAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKRAV +AMR GA G+KV  SGRLNGAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIMFRRAMKRAVGNAMRLGAQGIKVHVSGRLNGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAA 218
           +IDYG A A T YG  G+KV+V  + E+ DSD+  PAA
Sbjct: 181 NIDYGVAEAHTTYGVIGVKVWV-FKGEIIDSDAQ-PAA 216


>gi|261364861|ref|ZP_05977744.1| ribosomal protein S3 [Neisseria mucosa ATCC 25996]
 gi|288566910|gb|EFC88470.1| ribosomal protein S3 [Neisseria mucosa ATCC 25996]
          Length = 231

 Score =  243 bits (620), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 110/211 (52%), Positives = 155/211 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRL V   W S+WFA+ +++ A+L +D+ +R YL+  L  A V +++IER 
Sbjct: 1   MGQKINPTGFRLAVTKDWASKWFAKSTDFSAVLKQDIDVRNYLRKKLANASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ RI ++SARPG++IGKKG DIE +++ L  +    +H+++ E+ KPE++A +IA  I
Sbjct: 61  AKSARITIHSARPGVVIGKKGEDIEVLKRDLQALMGVPVHVNIEEIRKPELDAQIIADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV FRRAMKRA+Q+AMR GA G+K++ SGRLNGA+++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGADIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDS 211
           ++DY T+ A T YG  G+KV+V     V  S
Sbjct: 181 NVDYATSEAHTTYGVLGLKVWVYTEGSVKTS 211


>gi|255067452|ref|ZP_05319307.1| ribosomal protein S3 [Neisseria sicca ATCC 29256]
 gi|261378047|ref|ZP_05982620.1| ribosomal protein S3 [Neisseria cinerea ATCC 14685]
 gi|298370585|ref|ZP_06981900.1| ribosomal protein S3 [Neisseria sp. oral taxon 014 str. F0314]
 gi|255048247|gb|EET43711.1| ribosomal protein S3 [Neisseria sicca ATCC 29256]
 gi|269145497|gb|EEZ71915.1| ribosomal protein S3 [Neisseria cinerea ATCC 14685]
 gi|298281195|gb|EFI22685.1| ribosomal protein S3 [Neisseria sp. oral taxon 014 str. F0314]
          Length = 231

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/211 (52%), Positives = 155/211 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRL V   W S+WFA+ +++ A+L +D+ +R YL+  L  A V +++IER 
Sbjct: 1   MGQKINPTGFRLAVTKDWASKWFAKSTDFSAVLKQDIDVRNYLRKKLANASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ RI ++SARPG++IGKKG DIE +++ L  +    +H+++ E+ KPE++A +IA  I
Sbjct: 61  AKSARITIHSARPGVVIGKKGEDIEVLKRDLQALMGVPVHVNIEEIRKPELDAQIIADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV FRRAMKRA+Q+AMR GA G+K++ SGRLNGA+++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGADIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDS 211
           ++DY T+ A T YG  G+KV+V     V  S
Sbjct: 181 NVDYATSEAHTTYGVLGLKVWVYTEGNVKTS 211


>gi|261400058|ref|ZP_05986183.1| ribosomal protein S3 [Neisseria lactamica ATCC 23970]
 gi|269210284|gb|EEZ76739.1| ribosomal protein S3 [Neisseria lactamica ATCC 23970]
          Length = 231

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/211 (52%), Positives = 155/211 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRL V   W S+WFA+ +++ A+L +D+ +R YL+  L  A V +++IER 
Sbjct: 1   MGQKINPTGFRLAVTKDWASKWFAKSTDFSAVLKQDIDVRNYLRKKLANASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ RI ++SARPG++IGKKG DIE +++ L  +    +H+++ E+ KPE++A +IA  I
Sbjct: 61  AKSARITIHSARPGVVIGKKGEDIEVLKRDLQALMGVPVHVNIEEIRKPELDAQIIADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV FRRAMKRA+Q+AMR GA G+K++ SGRLNGA+++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGADIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDS 211
           ++DY T+ A T YG  G+KV+V     V  S
Sbjct: 181 NVDYATSEAHTTYGVLGLKVWVYTEGNVKAS 211


>gi|189424416|ref|YP_001951593.1| 30S ribosomal protein S3 [Geobacter lovleyi SZ]
 gi|226697717|sp|B3E7U1|RS3_GEOLS RecName: Full=30S ribosomal protein S3
 gi|189420675|gb|ACD95073.1| ribosomal protein S3 [Geobacter lovleyi SZ]
          Length = 210

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 112/202 (55%), Positives = 158/202 (78%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI FRLGV  TW+S+W+A  +++   LHEDLKIR++L+  L  AG++KI IER 
Sbjct: 1   MGQKVNPIGFRLGVIKTWDSKWYAE-ADFAKNLHEDLKIRQFLKKRLYSAGISKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I +++ARPGLIIGKKG ++E ++K L+ +T+ E+ +++NEV KPE++A L+A+++
Sbjct: 60  ANKTKINIHAARPGLIIGKKGAEVELLKKDLAAITSKEVFININEVRKPELDAQLVAENV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK++V S+++FGA G+++  SGRL GAE+SRTE Y EGRVPL TLRA
Sbjct: 120 ALQLERRIAFRRAMKKSVTSSLKFGAKGIRITCSGRLGGAEMSRTEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A+T YG  G+KV +
Sbjct: 180 DIDYGFAEAKTTYGIIGVKVLI 201


>gi|85858152|ref|YP_460354.1| 30S ribosomal protein S3 [Syntrophus aciditrophicus SB]
 gi|123752424|sp|Q2LQ95|RS3_SYNAS RecName: Full=30S ribosomal protein S3
 gi|85721243|gb|ABC76186.1| SSU ribosomal protein S3P [Syntrophus aciditrophicus SB]
          Length = 216

 Score =  241 bits (616), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 119/202 (58%), Positives = 156/202 (77%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  WNSRW+A  S Y ++L+EDLKIR YL+  L  AG++ I IER 
Sbjct: 1   MGQKVNPIGLRLGINKNWNSRWYADKS-YRSMLYEDLKIRGYLKKKLYHAGISHIDIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ +Y+ARPG+IIGKKG +IEK++K+L N+++SEI +++ EV KPEI+A L+A++I
Sbjct: 60  VNKAKVNIYAARPGIIIGKKGAEIEKLKKELENVSSSEIIINILEVRKPEIDAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK+ V +A++FGA G++V  SGRL GAE+SRTE Y EGRVPL TLRA
Sbjct: 120 ATQLERRVAFRRAMKKCVLTALKFGAKGIRVSCSGRLGGAEMSRTEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            ID G   A+TAYG  GIKV +
Sbjct: 180 DIDSGFTEAKTAYGQIGIKVLI 201


>gi|291280142|ref|YP_003496977.1| 30S ribosomal protein S3 [Deferribacter desulfuricans SSM1]
 gi|290754844|dbj|BAI81221.1| 30S ribosomal protein S3 [Deferribacter desulfuricans SSM1]
          Length = 224

 Score =  241 bits (616), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 114/218 (52%), Positives = 161/218 (73%), Gaps = 1/218 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI FRLG+N  W S WF    EY   L EDLKIR++L+  LKQAG++ I IER 
Sbjct: 1   MGQKVHPIGFRLGINKDWKSVWFFGKKEYREKLMEDLKIRDFLKKRLKQAGLSNIQIERM 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               RII+ ++RPG++IGKKG +IE ++K+L  +T++++ + + EV KPEI+A L+A+++
Sbjct: 61  GSKVRIILNTSRPGIVIGKKGAEIENLKKELRKLTDNDVIIVIREVKKPEIDAQLVAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A Q+ERRV FRRAMK+AV  A++ GA G+K+  SGRL GAE++RTE Y++GRVPLQTLRA
Sbjct: 121 AMQIERRVAFRRAMKKAVLQALKGGAQGIKIACSGRLAGAEMARTEWYIKGRVPLQTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAA 218
            IDYG A A+T YG  G+KV++  + E+ ++   I A 
Sbjct: 181 DIDYGFAEAQTTYGIIGVKVWI-FKGEIVENKDKIAAG 217


>gi|325267183|ref|ZP_08133850.1| 30S ribosomal protein S3 [Kingella denitrificans ATCC 33394]
 gi|324981346|gb|EGC16991.1| 30S ribosomal protein S3 [Kingella denitrificans ATCC 33394]
          Length = 233

 Score =  241 bits (616), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 153/202 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P+ FRL VN  W+S+WFA+ +E+  +L +D+ +R YL  HL  A V +++IER 
Sbjct: 1   MGQKIHPVGFRLAVNKDWSSKWFAKSTEFATVLKQDIDVRTYLSKHLADASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ RI +++ARPG++IG+KG  IE +++ L  +    +H+++ E+ KPE++A LIA  I
Sbjct: 61  AKSARITIHTARPGVVIGQKGAGIEVLKRDLEKLLGVAVHVNIEEIRKPELDAQLIADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV FRRAMKRA+Q+AMR GA GVK++ SGRLNGA+++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVQFRRAMKRAMQNAMRAGAKGVKIMTSGRLNGADIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            +DY T+ A T YG  G+KV+V
Sbjct: 181 DVDYATSEALTTYGIIGLKVWV 202


>gi|226939192|ref|YP_002794263.1| 30S ribosomal protein S3 [Laribacter hongkongensis HLHK9]
 gi|254764534|sp|C1DAS3|RS3_LARHH RecName: Full=30S ribosomal protein S3
 gi|226714116|gb|ACO73254.1| RpsC [Laribacter hongkongensis HLHK9]
          Length = 233

 Score =  241 bits (616), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 115/225 (51%), Positives = 157/225 (69%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W+S+WFA    +  +L ED+ +RE+L+  LK A V++I IER 
Sbjct: 1   MGQKIDPRGFRLAVTRNWSSKWFANSQNFPGMLKEDIDVREFLKAKLKNASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ RI +++ARPG++IGKKG DIE ++++L       +H+++ EV KPEI+A +IA  I
Sbjct: 61  AKSARITIHTARPGVVIGKKGEDIEVLKQELQKRMGVPVHVNIEEVRKPEIDAQIIADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV+FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLEKRVMFRRAMKRAMQNAMRLGALGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            +DY T+ A T YG  GIKV+V   D      S  P    + + K
Sbjct: 181 DVDYATSEAHTTYGVIGIKVWVYKGDMKPGQVSAEPTQPEKKMRK 225


>gi|313667447|ref|YP_004047731.1| 30S ribosomal protein S3 [Neisseria lactamica ST-640]
 gi|309379153|emb|CBX22284.1| 30S ribosomal protein S3 [Neisseria lactamica Y92-1009]
 gi|313004909|emb|CBN86335.1| 30S ribosomal protein S3 [Neisseria lactamica 020-06]
          Length = 231

 Score =  241 bits (616), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 109/211 (51%), Positives = 155/211 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRL V   W S+WFA+ +++ A+L +D+ +R YL+  L  A V +++IER 
Sbjct: 1   MGQKINPTGFRLAVTKDWASKWFAKSTDFSAVLKQDIDVRNYLRKKLANASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ RI ++S+RPG++IGKKG DIE +++ L  +    +H+++ E+ KPE++A +IA  I
Sbjct: 61  AKSARITIHSSRPGVVIGKKGEDIEVLKRDLQALMGVPVHVNIEEIRKPELDAQIIADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV FRRAMKRA+Q+AMR GA G+K++ SGRLNGA+++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGADIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDS 211
           ++DY T+ A T YG  G+KV+V     V  S
Sbjct: 181 NVDYATSEAHTTYGVLGLKVWVYTEGNVKAS 211


>gi|238021596|ref|ZP_04602022.1| hypothetical protein GCWU000324_01496 [Kingella oralis ATCC 51147]
 gi|237866210|gb|EEP67252.1| hypothetical protein GCWU000324_01496 [Kingella oralis ATCC 51147]
          Length = 232

 Score =  241 bits (615), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 154/202 (76%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P+ FRL VN  W+S+WFA+ +++  +L +D+ +REYL   L  A V +I+IER 
Sbjct: 1   MGQKIHPVGFRLAVNKDWSSKWFAKSTDFATVLKQDIDVREYLSKRLANASVGRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ RI ++SARPG++IG+KG DIE +++ L  +    +H+++ E+ +PE++A +IA  I
Sbjct: 61  AKSARITIHSARPGVVIGQKGADIEILKQDLEKLLGVAVHVNIEEIRRPELDAQIIADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV FRRAMKRA+Q+AMR GA G+K++ SGRLNGA+++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVQFRRAMKRAMQNAMRAGAKGIKIMTSGRLNGADIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            +DY T+ A T YG  G+KV+V
Sbjct: 181 DVDYATSEALTTYGIIGLKVWV 202


>gi|261380565|ref|ZP_05985138.1| ribosomal protein S3 [Neisseria subflava NJ9703]
 gi|284796533|gb|EFC51880.1| ribosomal protein S3 [Neisseria subflava NJ9703]
          Length = 230

 Score =  241 bits (615), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 107/211 (50%), Positives = 155/211 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRL V   W+S+WFA+ +++  +L +D+ +R YL+  L  A V +++IER 
Sbjct: 1   MGQKINPTGFRLAVTKDWSSKWFAKSTDFSTVLKQDIDVRNYLRKKLANASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ RI ++SARPG++IGKKG DIE +++ L  +    +H+++ E+ +PE++A +IA  I
Sbjct: 61  AKSARITIHSARPGVVIGKKGEDIEILKRDLQTLMGVPVHVNIEEIRRPELDAQIIADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV FRRAMKRA+Q+AMR GA G+K++ SGRLNGA+++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGADIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDS 211
           ++DY T+ A T YG  G+KV+V     +  S
Sbjct: 181 NVDYATSEAHTTYGVLGLKVWVYTEGNIKSS 211


>gi|262277100|ref|ZP_06054893.1| ribosomal protein S3 [alpha proteobacterium HIMB114]
 gi|262224203|gb|EEY74662.1| ribosomal protein S3 [alpha proteobacterium HIMB114]
          Length = 225

 Score =  241 bits (615), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 150/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RL +N TW+S WFA+   YG  L ED KIR+Y+   +K +GV+KILIER 
Sbjct: 1   MGQKVNPIGIRLKINRTWDSVWFAKKQNYGTYLIEDFKIRKYINKTIKNSGVSKILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K C + +Y++RPG +IGKKG+DIEKI+  +S +T  E+ +++ E+ KPE+++ L+A++I
Sbjct: 61  SKKCVVTIYTSRPGFVIGKKGSDIEKIKNNISKITIDEVSVNIKEIRKPELDSYLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV +R+AMKRA+ SA+R GA G+KV  SGRL G E++RTE   EG +PL TLRA
Sbjct: 121 AQQLEKRVAYRKAMKRAMSSALRLGAKGIKVTVSGRLGGNEIARTEWLREGSIPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            +DY  A A T YG  G+KV++
Sbjct: 181 DVDYAEAEASTTYGIIGVKVWI 202


>gi|224827023|ref|ZP_03700120.1| ribosomal protein S3 [Lutiella nitroferrum 2002]
 gi|224600689|gb|EEG06875.1| ribosomal protein S3 [Lutiella nitroferrum 2002]
          Length = 233

 Score =  241 bits (614), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 150/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL VN  W+S+WFA   ++  +L +D+ +R +L+  L  A V ++ IER 
Sbjct: 1   MGQKIHPTGFRLAVNKNWSSKWFANSHDFADMLKQDIDVRAFLKKRLANASVGRVTIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ RI ++SARPG++IGKKG DIE ++K+L       +H+++ EV KPEI+A +IA  I
Sbjct: 61  AKSARITIHSARPGVVIGKKGEDIEVLKKELQKRLGVPVHVNIEEVRKPEIDAQIIADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV+FRRAMKRA+Q+AMR GA G+K+++SGRLNG E++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLEKRVMFRRAMKRAMQNAMRMGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            +DY T+ A T YG  GIKV+V
Sbjct: 181 DVDYATSEANTTYGIIGIKVWV 202


>gi|302344350|ref|YP_003808879.1| ribosomal protein S3 [Desulfarculus baarsii DSM 2075]
 gi|301640963|gb|ADK86285.1| ribosomal protein S3 [Desulfarculus baarsii DSM 2075]
          Length = 219

 Score =  240 bits (613), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 113/214 (52%), Positives = 154/214 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI FRLGV  TW+SRWFA   +Y  L+ ED +IR++L+  L  AGV+ I IER 
Sbjct: 1   MGQKVNPIGFRLGVIRTWDSRWFANKRDYAGLVFEDHQIRKFLKKKLFHAGVSHIEIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I +++ARPG++IGKKG++IE ++K L  +   E+ L ++EV KPE++A L+A+S+
Sbjct: 61  ANKAKIRIHTARPGIVIGKKGSEIESVKKALEQLIKREVMLDIHEVRKPEVDAQLVAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMKRAV +A++ GA G+++  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 ASQLERRIAFRRAMKRAVTTALKLGAQGIRIQCSGRLGGAEMARREWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDST 214
            IDYG A A T YG  G+KV +   + + D D T
Sbjct: 181 DIDYGFAEARTTYGVIGVKVLIFKGEVLDDRDKT 214


>gi|95931437|ref|ZP_01314143.1| ribosomal protein S3 [Desulfuromonas acetoxidans DSM 684]
 gi|95132505|gb|EAT14198.1| ribosomal protein S3 [Desulfuromonas acetoxidans DSM 684]
          Length = 211

 Score =  240 bits (613), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 111/202 (54%), Positives = 154/202 (76%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P+ FRLGV  TW S+W+A   +Y   +HEDLK+R YL+  L  AG++KI IER 
Sbjct: 1   MGQKVHPVGFRLGVIRTWESKWYA-DEDYARFVHEDLKLRNYLKKRLYHAGISKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ +Y+ARPG+IIGK+G+++E ++++L+ +T+ EI L++ EV KPE+NA L+A+ +
Sbjct: 60  AGKMKLNIYAARPGIIIGKRGSEVEALKQELAKLTDKEIFLNIQEVRKPEMNAQLVAEGV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMKR+V  ++RFGA G+K+  SGRL GAE+SRTE Y EGRVPL T+RA
Sbjct: 120 ALQLERRVAFRRAMKRSVGQSLRFGAQGIKITCSGRLGGAEMSRTEWYREGRVPLHTIRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A+T YG  G+KV +
Sbjct: 180 DIDYGFAEAKTTYGIIGVKVLI 201


>gi|224417891|ref|ZP_03655897.1| 30S ribosomal protein S3 [Helicobacter canadensis MIT 98-5491]
 gi|253827230|ref|ZP_04870115.1| 30S ribosomal protein S3 [Helicobacter canadensis MIT 98-5491]
 gi|313141433|ref|ZP_07803626.1| 30S ribosomal protein S3 [Helicobacter canadensis MIT 98-5491]
 gi|253510636|gb|EES89295.1| 30S ribosomal protein S3 [Helicobacter canadensis MIT 98-5491]
 gi|313130464|gb|EFR48081.1| 30S ribosomal protein S3 [Helicobacter canadensis MIT 98-5491]
          Length = 235

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/202 (55%), Positives = 149/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF   +     + ED KIR++L+  L  AGV+ ILIERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPSFATAPQNVAEDYKIRKFLKKELYYAGVSDILIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  R+ V +ARPG+IIGKKG D+EK+++ L+ + N +I L++ EV KP+ NA L A+S+
Sbjct: 61  ARKVRVTVVAARPGIIIGKKGADVEKLKESLNKIVNKDIFLNIKEVKKPQSNAQLAAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK+ +Q AM+ GA G+KV  SGRL GAE++RTE Y+EGR+PL TLRA
Sbjct: 121 ATQLERRVAFRRAMKKVMQGAMKSGAKGIKVKVSGRLAGAEMARTEWYMEGRIPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG+ G+KV++
Sbjct: 181 KIDYGFAEALTTYGNIGVKVWI 202


>gi|153210013|ref|ZP_01947564.1| ribosomal protein S3 [Coxiella burnetii 'MSU Goat Q177']
 gi|154706269|ref|YP_001425176.1| SSU ribosomal protein S3P [Coxiella burnetii Dugway 5J108-111]
 gi|161830479|ref|YP_001596191.1| ribosomal protein S3 [Coxiella burnetii RSA 331]
 gi|165924132|ref|ZP_02219964.1| ribosomal protein S3 [Coxiella burnetii RSA 334]
 gi|212213244|ref|YP_002304180.1| SSU ribosomal protein S3P [Coxiella burnetii CbuG_Q212]
 gi|212218080|ref|YP_002304867.1| SSU ribosomal protein S3P [Coxiella burnetii CbuK_Q154]
 gi|189044972|sp|A9KD25|RS3_COXBN RecName: Full=30S ribosomal protein S3
 gi|189044973|sp|A9NAN0|RS3_COXBR RecName: Full=30S ribosomal protein S3
 gi|226697691|sp|B6J5D8|RS3_COXB1 RecName: Full=30S ribosomal protein S3
 gi|226697692|sp|B6J257|RS3_COXB2 RecName: Full=30S ribosomal protein S3
 gi|120575196|gb|EAX31820.1| ribosomal protein S3 [Coxiella burnetii 'MSU Goat Q177']
 gi|154355555|gb|ABS77017.1| SSU ribosomal protein S3P [Coxiella burnetii Dugway 5J108-111]
 gi|161762346|gb|ABX77988.1| ribosomal protein S3 [Coxiella burnetii RSA 331]
 gi|165916414|gb|EDR35018.1| ribosomal protein S3 [Coxiella burnetii RSA 334]
 gi|212011654|gb|ACJ19035.1| SSU ribosomal protein S3P [Coxiella burnetii CbuG_Q212]
 gi|212012342|gb|ACJ19722.1| SSU ribosomal protein S3P [Coxiella burnetii CbuK_Q154]
          Length = 227

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 111/202 (54%), Positives = 152/202 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+G+   W S W+A   ++   L+EDL +R+ LQ  LK A V++I IER 
Sbjct: 1   MGQKVNPVGMRIGITRDWTSNWYADKKDFADRLNEDLNVRQLLQKRLKGAAVSRIQIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N +II++SARPG+IIGKKG +IE +R ++S +    +H+++ EV KPE++A L+A++I
Sbjct: 61  ARNAKIIIHSARPGVIIGKKGGEIEALRDEISKVMKVPVHITIEEVRKPELDAKLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+ +R GA GVK+  SGRL GAE++RTE Y EGRVPL T RA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNTLRQGALGVKISVSGRLGGAEIARTEWYREGRVPLHTFRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A+T YG  G+KV++
Sbjct: 181 DIDYATASAKTTYGIIGVKVWI 202


>gi|59802154|ref|YP_208866.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae FA 1090]
 gi|194099929|ref|YP_002003067.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae NCCP11945]
 gi|239997932|ref|ZP_04717856.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae 35/02]
 gi|240015090|ref|ZP_04722003.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae DGI18]
 gi|240017539|ref|ZP_04724079.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae FA6140]
 gi|240081682|ref|ZP_04726225.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae FA19]
 gi|240113960|ref|ZP_04728450.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae MS11]
 gi|240116694|ref|ZP_04730756.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae PID18]
 gi|240118916|ref|ZP_04732978.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae PID1]
 gi|240122162|ref|ZP_04735124.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae PID24-1]
 gi|240124454|ref|ZP_04737410.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae PID332]
 gi|240124677|ref|ZP_04737563.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae SK-92-679]
 gi|240129130|ref|ZP_04741791.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae SK-93-1035]
 gi|254494715|ref|ZP_05107886.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae 1291]
 gi|260439547|ref|ZP_05793363.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae DGI2]
 gi|268593782|ref|ZP_06127949.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae 35/02]
 gi|268597779|ref|ZP_06131946.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae FA19]
 gi|268600024|ref|ZP_06134191.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae MS11]
 gi|268602362|ref|ZP_06136529.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae PID18]
 gi|268604625|ref|ZP_06138792.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae PID1]
 gi|268683083|ref|ZP_06149945.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae PID332]
 gi|268683251|ref|ZP_06150113.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae SK-92-679]
 gi|268687513|ref|ZP_06154375.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae SK-93-1035]
 gi|291042783|ref|ZP_06568524.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae DGI2]
 gi|293398196|ref|ZP_06642401.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae F62]
 gi|75507299|sp|Q5F5T3|RS3_NEIG1 RecName: Full=30S ribosomal protein S3
 gi|226697736|sp|B4RQY4|RS3_NEIG2 RecName: Full=30S ribosomal protein S3
 gi|59719049|gb|AAW90454.1| putative 30S ribosomal subunit protein S3 [Neisseria gonorrhoeae FA
           1090]
 gi|193935219|gb|ACF31043.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae NCCP11945]
 gi|226513755|gb|EEH63100.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae 1291]
 gi|268547171|gb|EEZ42589.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae 35/02]
 gi|268551567|gb|EEZ46586.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae FA19]
 gi|268584155|gb|EEZ48831.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae MS11]
 gi|268586493|gb|EEZ51169.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae PID18]
 gi|268588756|gb|EEZ53432.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae PID1]
 gi|268623367|gb|EEZ55767.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae PID332]
 gi|268623535|gb|EEZ55935.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae SK-92-679]
 gi|268627797|gb|EEZ60197.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae SK-93-1035]
 gi|291013217|gb|EFE05183.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae DGI2]
 gi|291611459|gb|EFF40529.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae F62]
 gi|317165382|gb|ADV08923.1| 30S ribosomal protein S3 [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 230

 Score =  240 bits (612), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 108/211 (51%), Positives = 154/211 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRL V   W S+WFA+ +++  +L +D+ +R YL+  L  A V +++IER 
Sbjct: 1   MGQKINPTGFRLAVTKDWASKWFAKSTDFSTVLKQDIDVRNYLRQKLANASVGRVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ RI ++SARPG++IGKKG DIE +++ L  +    IH+++ E+ +PE++A +IA  I
Sbjct: 61  AKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGVPIHVNIEEIRRPELDAQIIADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV FRRAMKRA+Q+AMR GA G+K++ SGRLNGA+++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGADIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDS 211
           ++DY T+ A T YG  G+KV+V     +  S
Sbjct: 181 NVDYATSEAHTTYGVLGLKVWVYTEGNIKSS 211


>gi|307823448|ref|ZP_07653677.1| ribosomal protein S3 [Methylobacter tundripaludum SV96]
 gi|307735433|gb|EFO06281.1| ribosomal protein S3 [Methylobacter tundripaludum SV96]
          Length = 223

 Score =  239 bits (611), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 110/215 (51%), Positives = 154/215 (71%), Gaps = 1/215 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNSRW+A   +Y   LH+DL +R+Y++  L  A V++I I R 
Sbjct: 1   MGQKVHPTGIRLGIVKDWNSRWYASSQDYSVFLHQDLTVRDYIKKKLAHASVSRIQINRP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
             N  I +++ARPG++IGKKG DIE +R+ +S +    + L+V E+ KPE++A L+A+ +
Sbjct: 61  PNNAHITIHTARPGIVIGKKGEDIEALRQAVSKIMGIPVQLNVEEIRKPELDAQLVAEGV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+R+++RRAMKRAV + MR GA+G+K+   GRLNGAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLEKRIMYRRAMKRAVTNTMRLGAEGIKINVGGRLNGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDY TA A T YG  GIKV++  + EV D D+ I
Sbjct: 181 DIDYATAEAHTTYGIIGIKVWI-FKGEVFDMDAHI 214


>gi|296313371|ref|ZP_06863312.1| ribosomal protein S3 [Neisseria polysaccharea ATCC 43768]
 gi|296840082|gb|EFH24020.1| ribosomal protein S3 [Neisseria polysaccharea ATCC 43768]
          Length = 230

 Score =  239 bits (611), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 107/211 (50%), Positives = 154/211 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRL V   W S+WFA+ +++  +L +D+ +R YL+  L  A V +++IER 
Sbjct: 1   MGQKINPTGFRLAVTKDWASKWFAKSTDFSTVLKQDIDVRNYLRQKLANASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ RI ++SARPG++IGKKG DIE +++ L  +    +H+++ E+ +PE++A +IA  I
Sbjct: 61  AKSARITIHSARPGVVIGKKGEDIEVLKRDLQALMGVPVHVNIEEIRRPELDAQIIADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV FRRAMKRA+Q+AMR GA G+K++ SGRLNGA+++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGADIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDS 211
           ++DY T+ A T YG  G+KV+V     +  S
Sbjct: 181 NVDYATSEAHTTYGVLGLKVWVYTEGNIKSS 211


>gi|242309325|ref|ZP_04808480.1| 30S ribosomal protein S3 [Helicobacter pullorum MIT 98-5489]
 gi|239523896|gb|EEQ63762.1| 30S ribosomal protein S3 [Helicobacter pullorum MIT 98-5489]
          Length = 235

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/202 (55%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF   +     + ED KIR++L+  L  AGV+ ILIERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPAFTTAPQNIAEDYKIRKFLKKELYYAGVSDILIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  R+ V +ARPG+IIGKKG D+EK+++ L  + N +I L++ EV KP+ NA L A+S+
Sbjct: 61  ARKVRVTVVAARPGIIIGKKGADVEKLKESLKKIVNKDIFLNIKEVKKPQSNAQLSAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK+ +Q AM+ GA G+KV  SGRL GAE++RTE Y+EGR+PL TLRA
Sbjct: 121 ATQLERRVAFRRAMKKVMQGAMKSGAKGIKVKVSGRLAGAEMARTEWYMEGRIPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG+ G+KV++
Sbjct: 181 KIDYGFAEALTTYGNIGVKVWI 202


>gi|225076401|ref|ZP_03719600.1| hypothetical protein NEIFLAOT_01446 [Neisseria flavescens
           NRL30031/H210]
 gi|241759632|ref|ZP_04757733.1| ribosomal protein S3 [Neisseria flavescens SK114]
 gi|319639555|ref|ZP_07994302.1| 30S ribosomal protein S3 [Neisseria mucosa C102]
 gi|224952249|gb|EEG33458.1| hypothetical protein NEIFLAOT_01446 [Neisseria flavescens
           NRL30031/H210]
 gi|241320004|gb|EER56385.1| ribosomal protein S3 [Neisseria flavescens SK114]
 gi|317399126|gb|EFV79800.1| 30S ribosomal protein S3 [Neisseria mucosa C102]
          Length = 230

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/211 (50%), Positives = 154/211 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRL V   W S+WFA+ +++  +L +D+ +R YL+  L  A V +++IER 
Sbjct: 1   MGQKINPTGFRLAVTKDWASKWFAKSTDFSTVLKQDIDVRNYLRKKLANASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ RI ++SARPG++IGKKG DIE +++ L  +    +H+++ E+ +PE++A +IA  I
Sbjct: 61  AKSARITIHSARPGVVIGKKGEDIEILKRDLQALMGVPVHVNIEEIRRPELDAQIIADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV FRRAMKRA+Q+AMR GA G+K++ SGRLNGA+++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGADIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDS 211
           ++DY T+ A T YG  G+KV+V     +  S
Sbjct: 181 NVDYATSEAHTTYGVLGLKVWVYTEGNIKSS 211


>gi|153867894|ref|ZP_01998088.1| 30S ribosomal protein S3 [Beggiatoa sp. SS]
 gi|152144786|gb|EDN71912.1| 30S ribosomal protein S3 [Beggiatoa sp. SS]
          Length = 218

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 152/202 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+ P  FRLG+   W+S+W+A   +Y   L+ DLK+ E+++  L QA ++++ IER 
Sbjct: 7   MGQKVPPTGFRLGIIKDWSSKWYASSKDYANYLNTDLKVPEFIKKKLAQASLSEVRIERP 66

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N RII+++ARPG++IGKKG DI+K+R +++ M    +H+SV E+ KPE++A L+A S+
Sbjct: 67  ARNARIIIHTARPGIVIGKKGEDIDKLRTQVTEMMGIPVHISVEEIRKPEVDAHLVAVSV 126

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKR V +AMR GA G+++  SGRLNGAE++R E Y EGRVPL TLRA
Sbjct: 127 AQQLERRIMFRRAMKRVVGNAMRLGAQGIRINVSGRLNGAEIARKEWYREGRVPLHTLRA 186

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 187 DIDYGFAEAHTTYGVIGVKVWI 208


>gi|34499635|ref|NP_903850.1| 30S ribosomal protein S3 [Chromobacterium violaceum ATCC 12472]
 gi|61215684|sp|Q7NQF8|RS3_CHRVO RecName: Full=30S ribosomal protein S3
 gi|34105485|gb|AAQ61840.1| 30S ribosomal protein S3 [Chromobacterium violaceum ATCC 12472]
          Length = 233

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/227 (48%), Positives = 161/227 (70%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL VN  W+S+WFA    +  +L +D+++RE+L+  L  A V ++ IER 
Sbjct: 1   MGQKIHPTGFRLAVNKNWSSKWFASSQNFPEMLKQDIEVREFLKKRLGHASVGRVTIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ RI ++SARPG++IGKKG DIE ++++L       +H+++ EV KPE++A +IA  I
Sbjct: 61  AKSARITIHSARPGVVIGKKGEDIEVLKQELQKRLGVPVHVNIEEVRKPELDAQIIADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV+FRRAMKRA+Q+AMR GA+G+K+++SGRLNG +++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLEKRVMFRRAMKRAMQNAMRLGAEGIKIMSSGRLNGIDIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            +DY T+ A+T YG  GIKV+V   +         PAA  + + K +
Sbjct: 181 DVDYATSEAKTTYGIIGIKVWVYKGELKPGQVQATPAAPEKKMRKGA 227


>gi|117924161|ref|YP_864778.1| 30S ribosomal protein S3P [Magnetococcus sp. MC-1]
 gi|152060871|sp|A0L5X9|RS3_MAGSM RecName: Full=30S ribosomal protein S3
 gi|117607917|gb|ABK43372.1| SSU ribosomal protein S3P [Magnetococcus sp. MC-1]
          Length = 210

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/202 (56%), Positives = 153/202 (75%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG   TW++RWFA    Y  LL ED+KIR +L+  L  A V+KI+IER 
Sbjct: 1   MGQKVHPTGFRLGTTKTWDTRWFA-DRNYADLLLEDIKIRAWLKKRLAHASVSKIVIERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI +++ARPG+IIGKKG DIEK++  +  +T+SE+ +++ E+ KPE +A L+A+++
Sbjct: 60  AQKARINIHTARPGIIIGKKGGDIEKLKNDIKAITSSEVQINIVEIRKPEADAQLVAENV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRR+MKRAV SAMR GA+G+++  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 120 AQQLERRVAFRRSMKRAVTSAMRLGAEGIRINCAGRLGGAEIARTEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV+V
Sbjct: 180 DIDYGFAEAHTTYGIIGVKVWV 201


>gi|15676075|ref|NP_273206.1| 30S ribosomal protein S3 [Neisseria meningitidis MC58]
 gi|121634022|ref|YP_974267.1| 30S ribosomal protein S3 [Neisseria meningitidis FAM18]
 gi|161870909|ref|YP_001600089.1| 30S ribosomal protein S3 [Neisseria meningitidis 053442]
 gi|218767162|ref|YP_002341674.1| 30S ribosomal protein S3 [Neisseria meningitidis Z2491]
 gi|254805808|ref|YP_003084029.1| 30S ribosomal protein S3 [Neisseria meningitidis alpha14]
 gi|304388949|ref|ZP_07370996.1| 30S ribosomal protein S3 [Neisseria meningitidis ATCC 13091]
 gi|54039502|sp|P66551|RS3_NEIMB RecName: Full=30S ribosomal protein S3
 gi|54041959|sp|P66550|RS3_NEIMA RecName: Full=30S ribosomal protein S3
 gi|152060886|sp|A1KRH9|RS3_NEIMF RecName: Full=30S ribosomal protein S3
 gi|189045022|sp|A9M3W0|RS3_NEIM0 RecName: Full=30S ribosomal protein S3
 gi|7225366|gb|AAF40606.1| 30S ribosomal protein S3 [Neisseria meningitidis MC58]
 gi|120865728|emb|CAM09457.1| 30S ribosomal protein S3 [Neisseria meningitidis FAM18]
 gi|121051170|emb|CAM07441.1| 30S ribosomal protein S3 [Neisseria meningitidis Z2491]
 gi|161596462|gb|ABX74122.1| 30S ribosomal protein S3 [Neisseria meningitidis 053442]
 gi|254669350|emb|CBA08429.1| 30S ribosomal protein S3 [Neisseria meningitidis alpha14]
 gi|254670747|emb|CBA06990.1| 30S ribosomal protein S3 [Neisseria meningitidis alpha153]
 gi|254672677|emb|CBA06542.1| 30S ribosomal protein S3 [Neisseria meningitidis alpha275]
 gi|261391684|emb|CAX49133.1| 30S ribosomal protein S3 [Neisseria meningitidis 8013]
 gi|304337083|gb|EFM03270.1| 30S ribosomal protein S3 [Neisseria meningitidis ATCC 13091]
 gi|308388364|gb|ADO30684.1| 30S ribosomal protein S3 [Neisseria meningitidis alpha710]
 gi|316985678|gb|EFV64624.1| ribosomal protein S3 [Neisseria meningitidis H44/76]
 gi|319411368|emb|CBY91779.1| 30S ribosomal protein S3 [Neisseria meningitidis WUE 2594]
 gi|325129067|gb|EGC51916.1| ribosomal protein S3 [Neisseria meningitidis N1568]
 gi|325131090|gb|EGC53813.1| ribosomal protein S3 [Neisseria meningitidis OX99.30304]
 gi|325133060|gb|EGC55732.1| ribosomal protein S3 [Neisseria meningitidis M6190]
 gi|325135154|gb|EGC57780.1| ribosomal protein S3 [Neisseria meningitidis M13399]
 gi|325137206|gb|EGC59801.1| ribosomal protein S3 [Neisseria meningitidis M0579]
 gi|325139038|gb|EGC61584.1| ribosomal protein S3 [Neisseria meningitidis ES14902]
 gi|325141162|gb|EGC63662.1| ribosomal protein S3 [Neisseria meningitidis CU385]
 gi|325143238|gb|EGC65577.1| ribosomal protein S3 [Neisseria meningitidis 961-5945]
 gi|325145345|gb|EGC67622.1| ribosomal protein S3 [Neisseria meningitidis M01-240013]
 gi|325197435|gb|ADY92891.1| ribosomal protein S3 [Neisseria meningitidis G2136]
 gi|325199361|gb|ADY94816.1| ribosomal protein S3 [Neisseria meningitidis H44/76]
 gi|325203017|gb|ADY98471.1| ribosomal protein S3 [Neisseria meningitidis M01-240149]
 gi|325203268|gb|ADY98721.1| ribosomal protein S3 [Neisseria meningitidis M01-240355]
 gi|325205241|gb|ADZ00694.1| ribosomal protein S3 [Neisseria meningitidis M04-240196]
 gi|325207184|gb|ADZ02636.1| ribosomal protein S3 [Neisseria meningitidis NZ-05/33]
          Length = 230

 Score =  239 bits (609), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 107/211 (50%), Positives = 154/211 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRL V   W S+WFA+ +++  +L +D+ +R YL+  L  A V +++IER 
Sbjct: 1   MGQKINPTGFRLAVTKDWASKWFAKSTDFSTVLKQDIDVRNYLRQKLANASVGRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ RI ++SARPG++IGKKG DIE +++ L  +    +H+++ E+ +PE++A +IA  I
Sbjct: 61  AKSARITIHSARPGVVIGKKGEDIEVLKRDLQVLMGVPVHVNIEEIRRPELDAQIIADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV FRRAMKRA+Q+AMR GA G+K++ SGRLNGA+++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVQFRRAMKRAMQNAMRSGAKGIKIMTSGRLNGADIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDS 211
           ++DY T+ A T YG  G+KV+V     +  S
Sbjct: 181 NVDYATSEAHTTYGVLGLKVWVYTEGNIKSS 211


>gi|157737009|ref|YP_001489692.1| 30S ribosomal protein S3 [Arcobacter butzleri RM4018]
 gi|315636201|ref|ZP_07891455.1| 30S ribosomal protein S3 [Arcobacter butzleri JV22]
 gi|189044982|sp|A8ESU9|RS3_ARCB4 RecName: Full=30S ribosomal protein S3
 gi|157698863|gb|ABV67023.1| 30S ribosomal protein S3 [Arcobacter butzleri RM4018]
 gi|315479562|gb|EFU70241.1| 30S ribosomal protein S3 [Arcobacter butzleri JV22]
          Length = 234

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 114/202 (56%), Positives = 149/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF +     A + ED KIR+Y++  L  AG+A+ ++ERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPKFETMPANVAEDDKIRKYVKKELYYAGIAQTVVERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPG+IIGKKG D+EK++  LS +   EI +++ E  KP+I+A L A+++
Sbjct: 61  AKKVRVTVVAARPGIIIGKKGADVEKLKDALSKLVGKEIAVNIKEERKPQISAQLSAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKR +Q+A++ GA G+KV  SGRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRVMQNALKGGAKGIKVSVSGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  GIKV++
Sbjct: 181 RIDYGFAEAHTTYGCIGIKVWI 202


>gi|152060912|sp|A0LIJ6|RS3_SYNFM RecName: Full=30S ribosomal protein S3
          Length = 208

 Score =  239 bits (609), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 152/202 (75%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG+  +W+SRWFA   +Y  L+HED KIR+Y++  L  AG+AK+ IER 
Sbjct: 1   MGQKVHPTGFRLGILKSWDSRWFA-TKDYAKLVHEDRKIRDYIKARLYHAGIAKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I +++ARPG++IGKKG +IE +R+ L      EI + + EV +PE++ATL+ ++I
Sbjct: 60  ANKVKIRIFTARPGIVIGKKGAEIETLRRDLERKFKREILIDIQEVRRPELDATLVGENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           + QL RRV FRRAMKRAV +A++FGA GV+V ++GRL GAE++R E Y EGRVPL TLRA
Sbjct: 120 SLQLVRRVAFRRAMKRAVSAALKFGAKGVRVASAGRLGGAEMARREWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYGTA+A T YG+ G+KV++
Sbjct: 180 DIDYGTAIARTTYGAIGVKVWI 201


>gi|288942066|ref|YP_003444306.1| 30S ribosomal protein S3 [Allochromatium vinosum DSM 180]
 gi|288897438|gb|ADC63274.1| ribosomal protein S3 [Allochromatium vinosum DSM 180]
          Length = 225

 Score =  238 bits (608), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 109/217 (50%), Positives = 158/217 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W S+W+A   +Y  LL+ DL++R++L+  L +A V++I I+R 
Sbjct: 1   MGQKVHPNGIRLGIVKDWTSKWYANSKDYADLLNTDLQVRDFLRKELAKASVSRIQIDRP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN  I +++ARPG++IGKKG DI+K+R K+S M    +H+++ E+ KPE++A L+A+ I
Sbjct: 61  AKNAHITIHTARPGVVIGKKGEDIDKLRAKVSEMMGIPVHIAIEEIRKPELDAQLVAEGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKR++Q+ MR GA+G+KV  +GRLNGAE++R+E   EGRVPL TLRA
Sbjct: 121 AQQLERRIMFRRAMKRSIQNTMRLGAEGIKVSVAGRLNGAEIARSEWAREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPA 217
            IDYG A A+T YG  G+KV++   +   D     PA
Sbjct: 181 DIDYGFAEAKTTYGVLGVKVWIFKGEVFGDQLPEEPA 217


>gi|304310022|ref|YP_003809620.1| 30S ribosomal protein S3 [gamma proteobacterium HdN1]
 gi|301795755|emb|CBL43954.1| 30S ribosomal protein S3 [gamma proteobacterium HdN1]
          Length = 227

 Score =  238 bits (608), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 112/202 (55%), Positives = 151/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+    +S W+A    +G  L +D+K+REYL   LK A V++I IER 
Sbjct: 1   MGQKVHPTGIRLGIVKKHSSTWYASPKNFGDYLLKDIKVREYLSEKLKAASVSRIEIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N RI + +ARPG++IGKKG D+EK+RK+++++    +H+++ E+ KPE++A L+A+ I
Sbjct: 61  AENARITIKTARPGIVIGKKGEDVEKLRKEVASIMQVPVHINIEEIRKPELDAKLVAEGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ  MR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQGTMRLGAKGIKVQVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA AET YGS G+KV++
Sbjct: 181 DIDYATARAETTYGSIGVKVWI 202


>gi|300114730|ref|YP_003761305.1| 30S ribosomal protein S3 [Nitrosococcus watsonii C-113]
 gi|299540667|gb|ADJ28984.1| ribosomal protein S3 [Nitrosococcus watsonii C-113]
          Length = 223

 Score =  238 bits (607), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 151/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLG+   WNS+W+A   ++  LL+ DL +R YL   L  A V+ I I+R 
Sbjct: 1   MGQKVHPIGIRLGIVKDWNSKWYADSGQFSELLNNDLAVRSYLTKKLSHALVSNIQIDRP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N RI +++ARPG++IGKKG DI  +R+++S M    +H+++ E+ KPE++ATL+A ++
Sbjct: 61  ARNARITIHTARPGIVIGKKGEDINNLRQEVSGMMGIPVHINIQEIRKPELDATLVAVNV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKRAV +AMR GA G+++  SGRLNGAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIMFRRAMKRAVTNAMRVGAQGIRIKVSGRLNGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 DIDYGFAEARTTYGILGVKVWI 202


>gi|149922205|ref|ZP_01910643.1| ribosomal protein S3 [Plesiocystis pacifica SIR-1]
 gi|149816945|gb|EDM76430.1| ribosomal protein S3 [Plesiocystis pacifica SIR-1]
          Length = 225

 Score =  238 bits (607), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 119/227 (52%), Positives = 160/227 (70%), Gaps = 2/227 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK +PI FRLG+  TWNSRWF  G  Y   LHEDL++R +L+  L  A +++I IER 
Sbjct: 1   MGQKTHPIGFRLGIVKTWNSRWFEEG-RYKQWLHEDLQLRGFLKRKLISASISEITIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I ++SARPG+IIGK+G ++EKIR+++  MT+S++ L++ EV K E+NA L+A++I
Sbjct: 60  ANKVKINIFSARPGIIIGKRGAEVEKIRREVQKMTDSKVFLNIQEVRKAEVNAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
            QQLERR+ FRRA+KRAVQ+AM+FGA G++V A+GRL GAE+ R E YL+GRVPL TLRA
Sbjct: 120 GQQLERRIAFRRALKRAVQTAMKFGAKGIRVNAAGRLGGAEMGRREWYLQGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDYG   A T  G  GIK ++  + EV  S S +     R   K S
Sbjct: 180 DIDYGFHEARTPAGRIGIKCWI-FKGEVYGSMSGVDPRFPRPANKRS 225


>gi|153869561|ref|ZP_01999135.1| 30S ribosomal protein S3 [Beggiatoa sp. PS]
 gi|152073947|gb|EDN70859.1| 30S ribosomal protein S3 [Beggiatoa sp. PS]
          Length = 211

 Score =  238 bits (607), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 152/202 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLG+   W+S+W+A   +Y   L+ DLK+R +++  L  A V+++ IER 
Sbjct: 1   MGQKVHPIGMRLGIIKDWSSKWYANSQDYPVYLNTDLKVRAFIKKKLAPASVSEVRIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N RII+++ARPG++IGKKG DI+K+R  +S M    +H+SV E+ KPE++A L+A S+
Sbjct: 61  ARNARIIIHTARPGIVIGKKGEDIDKLRAIVSKMMGIPVHISVEEIRKPELDAYLVAVSV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR++FRRAMKR V +AMR GA G+++  SGRLNGAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLERRIMFRRAMKRVVGNAMRLGAQGIRINVSGRLNGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A+T YG  G+KV++
Sbjct: 181 DIDYGFAEAQTTYGIIGVKVWI 202


>gi|242237865|ref|YP_002986046.1| 30S ribosomal protein S3 [Dickeya dadantii Ech703]
 gi|242129922|gb|ACS84224.1| ribosomal protein S3 [Dickeya dadantii Ech703]
          Length = 233

 Score =  238 bits (607), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 151/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+  TWNS W+A   E+   L  D K+R+YL   L++A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKTWNSTWYANTKEFADNLDSDFKVRQYLNKELEKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKGVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           + QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 SSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|292492427|ref|YP_003527866.1| ribosomal protein S3 [Nitrosococcus halophilus Nc4]
 gi|291581022|gb|ADE15479.1| ribosomal protein S3 [Nitrosococcus halophilus Nc4]
          Length = 223

 Score =  238 bits (606), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 109/218 (50%), Positives = 156/218 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS+W+A  S++  LL+ DL +R +L   L  A V+ I I+R 
Sbjct: 1   MGQKVHPTGIRLGIVKDWNSKWYADSSQFSDLLNNDLGVRSHLTKKLSHALVSNIQIDRP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N RI +++ARPG++IGKKG DI  +R+++S M    +H+++ E+ KPE++ATL+A ++
Sbjct: 61  ARNARITIHTARPGIVIGKKGEDINNLRQEVSEMMGIPVHINIQEIRKPELDATLVAANV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKRAV +AMR GA G+++  SGRLNGAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIMFRRAMKRAVTNAMRVGAQGIRIKVSGRLNGAEIARNEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAA 218
           +IDYG A A+T YG  G+KV++   +     D  + A 
Sbjct: 181 NIDYGFAEAKTTYGVLGVKVWIFKGEVFEQPDQQVTAG 218


>gi|296272646|ref|YP_003655277.1| 30S ribosomal protein S3 [Arcobacter nitrofigilis DSM 7299]
 gi|296096820|gb|ADG92770.1| ribosomal protein S3 [Arcobacter nitrofigilis DSM 7299]
          Length = 232

 Score =  238 bits (606), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 112/202 (55%), Positives = 149/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF + S   A + ED KIR++++  L  AG+A+ LIERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPKFSSMPANVAEDSKIRKFVKKELYYAGIAQTLIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPG+IIGKKG D+EK++  L+ +   EI +++ E  KP+++  L A+++
Sbjct: 61  AKKVRVTVVAARPGIIIGKKGADVEKLKNSLTKLVGKEIAVNIKEERKPQLSGQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKR +Q+A++ GA G+KV  SGRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 AQQLERRVAFRRAMKRVMQNAIKGGAKGIKVSVSGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 RIDYGFAEAHTTYGCVGVKVWI 202


>gi|71083798|ref|YP_266518.1| 30S ribosomal protein S3 [Candidatus Pelagibacter ubique HTCC1062]
 gi|91207827|sp|Q4FLM4|RS3_PELUB RecName: Full=30S ribosomal protein S3
 gi|71062911|gb|AAZ21914.1| 30S ribosomal protein S3 [Candidatus Pelagibacter ubique HTCC1062]
          Length = 226

 Score =  238 bits (606), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 150/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+ FRLGVN  W+S W+A+  ++G  L ED KIR Y++ ++  +GV+K++IERT
Sbjct: 1   MGQKVNPVGFRLGVNRGWDSVWYAKKKDFGNYLIEDFKIRAYIKKNVVNSGVSKVMIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
              C + +Y++RPG +IGKKG+DI+KI+  LS  TN+E+ L++ EV KPE NA L+A++I
Sbjct: 61  SNKCFVTIYTSRPGFVIGKKGSDIDKIKNNLSKFTNNEVTLNIKEVKKPETNAYLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQL +R+ +RRAMKRA+QS +R GA G+KV  SGRL G E++RTE   EG +P  TLRA
Sbjct: 121 AQQLVKRISYRRAMKRAMQSCLRLGAKGIKVSISGRLGGNEIARTEWLREGSIPSHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY  A A T +G  GIK+++
Sbjct: 181 DIDYAEAEALTTFGIIGIKIWI 202


>gi|91763166|ref|ZP_01265130.1| 30S ribosomal protein S3 [Candidatus Pelagibacter ubique HTCC1002]
 gi|91717579|gb|EAS84230.1| 30S ribosomal protein S3 [Candidatus Pelagibacter ubique HTCC1002]
          Length = 226

 Score =  238 bits (606), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 150/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+ FRLGVN  W+S W+A+  ++G  L ED KIR Y++ ++  +GV+K++IERT
Sbjct: 1   MGQKVNPVGFRLGVNRGWDSVWYAKKKDFGNYLIEDFKIRAYIKKNVVNSGVSKVMIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
              C + +Y++RPG +IGKKG+DI+KI+  LS  TN+E+ L++ EV KPE NA L+A++I
Sbjct: 61  SNKCFVTIYTSRPGFVIGKKGSDIDKIKNNLSKFTNNEVTLNIKEVKKPETNAYLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQL +R+ +RRAMKRA+QS +R GA G+KV  SGRL G E++RTE   EG +P  TLRA
Sbjct: 121 AQQLVKRISYRRAMKRAMQSCLRLGAKGIKVSISGRLGGNEIARTEWLREGSIPSHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY  A A T +G  GIK+++
Sbjct: 181 DIDYAEAEALTTFGIIGIKIWI 202


>gi|116748996|ref|YP_845683.1| 30S ribosomal protein S3 [Syntrophobacter fumaroxidans MPOB]
 gi|116698060|gb|ABK17248.1| SSU ribosomal protein S3P [Syntrophobacter fumaroxidans MPOB]
          Length = 233

 Score =  237 bits (605), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 152/202 (75%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           +GQK++P  FRLG+  +W+SRWFA   +Y  L+HED KIR+Y++  L  AG+AK+ IER 
Sbjct: 26  LGQKVHPTGFRLGILKSWDSRWFA-TKDYAKLVHEDRKIRDYIKARLYHAGIAKVEIERA 84

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I +++ARPG++IGKKG +IE +R+ L      EI + + EV +PE++ATL+ ++I
Sbjct: 85  ANKVKIRIFTARPGIVIGKKGAEIETLRRDLERKFKREILIDIQEVRRPELDATLVGENI 144

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           + QL RRV FRRAMKRAV +A++FGA GV+V ++GRL GAE++R E Y EGRVPL TLRA
Sbjct: 145 SLQLVRRVAFRRAMKRAVSAALKFGAKGVRVASAGRLGGAEMARREWYREGRVPLHTLRA 204

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYGTA+A T YG+ G+KV++
Sbjct: 205 DIDYGTAIARTTYGAIGVKVWI 226


>gi|220935486|ref|YP_002514385.1| ribosomal protein S3 [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996796|gb|ACL73398.1| ribosomal protein S3 [Thioalkalivibrio sp. HL-EbGR7]
          Length = 228

 Score =  237 bits (605), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 119/214 (55%), Positives = 158/214 (73%), Gaps = 6/214 (2%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P+ FRLGV+  WNS W+A G +Y  +L +DL+IRE+L+  L QA V++I I R 
Sbjct: 1   MGQKVHPVGFRLGVSSEWNSTWYADGRDYANVLAKDLEIREFLKERLSQASVSRIEIARP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRK----KLSNMTNSEIHLSVNEVPKPEINATLI 116
            +   I +++ARPG++IGKKG DIE +RK    KL    NS + +++ E+ KPE++A L+
Sbjct: 61  ARQAFITIHTARPGIVIGKKGEDIEALRKEAAAKLGLDVNS-VKINIEEIRKPEVDAQLV 119

Query: 117 AQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQ 176
           A+ IAQQLERR++FRRAMKRAV +AMR GA GVKV  +GRLNGAE++R+E Y EGRVPL 
Sbjct: 120 AEGIAQQLERRIMFRRAMKRAVGNAMRLGALGVKVHVAGRLNGAEIARSEWYREGRVPLH 179

Query: 177 TLRAHIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
           TLRA IDYG A A T YG  G+KV+V  + EV D
Sbjct: 180 TLRADIDYGFAEARTTYGVIGVKVWV-FKGEVFD 212


>gi|251787977|ref|YP_003002698.1| 30S ribosomal protein S3 [Dickeya zeae Ech1591]
 gi|271502240|ref|YP_003335266.1| 30S ribosomal protein S3 [Dickeya dadantii Ech586]
 gi|307132833|ref|YP_003884849.1| 30S ribosomal subunit protein S3 [Dickeya dadantii 3937]
 gi|247536598|gb|ACT05219.1| ribosomal protein S3 [Dickeya zeae Ech1591]
 gi|270345795|gb|ACZ78560.1| ribosomal protein S3 [Dickeya dadantii Ech586]
 gi|306530362|gb|ADN00293.1| 30S ribosomal subunit protein S3 [Dickeya dadantii 3937]
          Length = 233

 Score =  237 bits (605), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 150/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+  TWNS W+A   E+   L  D K+R+YL   L++A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKTWNSTWYANTKEFADNLDSDFKVRQYLNKELEKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKGVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|224370685|ref|YP_002604849.1| RpsC [Desulfobacterium autotrophicum HRM2]
 gi|259495242|sp|C0Q9W7|RS3_DESAH RecName: Full=30S ribosomal protein S3
 gi|223693402|gb|ACN16685.1| RpsC [Desulfobacterium autotrophicum HRM2]
          Length = 215

 Score =  237 bits (605), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 112/217 (51%), Positives = 156/217 (71%), Gaps = 2/217 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RL +  TW+SRW+A    Y   + ED K+R +L+  L  AG++KI IER 
Sbjct: 1   MGQKVNPIGLRLNIVKTWDSRWYA-DKNYADFVFEDYKLRAFLKKKLFHAGISKIEIERF 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  RI V++ARPG+IIGKKG++I  ++K++  M   E+ + + E+ +PEI+A L+A++I
Sbjct: 60  TKRIRIRVFAARPGIIIGKKGSEIALLKKEIEQMITPEVLIDIQEIRRPEIDAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           + QLERR+ FRRAMKR+V SAMRFGA G+K+I SGRL GAE++RTE Y EGR+PL TLRA
Sbjct: 120 SAQLERRIAFRRAMKRSVSSAMRFGAQGIKIICSGRLGGAEMARTEWYKEGRIPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPA 217
            +DYG   A+T YG+ GIK ++  + EV  +D  + A
Sbjct: 180 DVDYGFTEAKTTYGAIGIKTFI-FKGEVLKADRNVKA 215


>gi|254455646|ref|ZP_05069075.1| ribosomal protein S3 [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082648|gb|EDZ60074.1| ribosomal protein S3 [Candidatus Pelagibacter sp. HTCC7211]
          Length = 226

 Score =  237 bits (605), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 150/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+ FRLGVN  W+S W+A+  ++G  L ED KIREY++ ++  +GV+K++IERT
Sbjct: 1   MGQKVNPVGFRLGVNRGWDSVWYAKKKDFGNYLIEDFKIREYIKKNVINSGVSKVMIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
              C + +Y++RPG +IGKKG+DI+KI+  LS  T +E+ L++ EV KPE NA L+A++I
Sbjct: 61  SNKCYVTIYTSRPGFVIGKKGSDIDKIKNNLSKFTTNEVALNIKEVKKPETNAYLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQL +R+ +RRAMKRA+QS +R GA G+KV  SGRL G E++RTE   +G +P  TLRA
Sbjct: 121 AQQLVKRISYRRAMKRAMQSCIRLGARGIKVSVSGRLGGNEIARTEWLRDGSIPSHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY  A A T YG  GIKV++
Sbjct: 181 DIDYAEAEALTTYGIIGIKVWI 202


>gi|29653596|ref|NP_819288.1| SSU ribosomal protein S3P [Coxiella burnetii RSA 493]
 gi|30581016|sp|O85388|RS3_COXBU RecName: Full=30S ribosomal protein S3
 gi|29540858|gb|AAO89802.1| SSU ribosomal protein S3P [Coxiella burnetii RSA 493]
          Length = 227

 Score =  237 bits (605), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 151/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+G+   W S W+A   ++   L+EDL +R+ LQ  LK A V++I IER 
Sbjct: 1   MGQKVNPVGMRIGITRDWTSNWYADKKDFADRLNEDLNVRQLLQKRLKGAAVSRIQIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N +II++SARPG+IIGKKG +IE +R ++  +    +H+++ EV KPE++A L+A++I
Sbjct: 61  ARNAKIIIHSARPGVIIGKKGGEIEALRDEIFKVMKVPVHITIEEVRKPELDAKLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+ +R GA GVK+  SGRL GAE++RTE Y EGRVPL T RA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNTLRQGALGVKISVSGRLGGAEIARTEWYREGRVPLHTFRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A+T YG  G+KV++
Sbjct: 181 DIDYATASAKTTYGIIGVKVWI 202


>gi|24981839|gb|AAN66090.1|AE016238_8 ribosomal protein S3 [Pseudomonas putida KT2440]
          Length = 237

 Score =  237 bits (605), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 112/202 (55%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+     S W+A G+ Y   L +DLK REYLQ  LK A V++I I R 
Sbjct: 10  MGQKVHPTGIRLGIVKEHTSVWYADGATYADYLLKDLKTREYLQDKLKSASVSRIDIHRP 69

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI +++ARPG++IGKKG D+EK+R+ L+      +H+++ E+ KPE++A L+AQS+
Sbjct: 70  AQTARITIHTARPGIVIGKKGEDVEKLRQDLTKQMGVPVHINIEEIRKPELDAMLVAQSV 129

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+AMR GA G+K+  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 130 AQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVSGRLGGAEIARTEWYREGRVPLHTLRA 189

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A T YG  G+KV++
Sbjct: 190 DIDYNTYEAHTTYGVIGVKVWI 211


>gi|127511098|ref|YP_001092295.1| 30S ribosomal protein S3 [Shewanella loihica PV-4]
 gi|152060904|sp|A3Q988|RS3_SHELP RecName: Full=30S ribosomal protein S3
 gi|126636393|gb|ABO22036.1| SSU ribosomal protein S3P [Shewanella loihica PV-4]
          Length = 229

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 115/220 (52%), Positives = 159/220 (72%), Gaps = 3/220 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W S W+A  S+Y   L  D ++R++L+  LKQA V+KI+IER 
Sbjct: 1   MGQKVHPNGIRLGITKPWISTWYADKSDYANNLSSDWEVRKFLEKKLKQASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R +++ +T     +++ E+ KPE++A L+A+ I
Sbjct: 61  AKSVRVTIHTARPGVVIGKKGEDVEKLRNEVAKLTGIPAQINIAEIRKPELDAKLVAEGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEH 220
            IDY TA + T YG  G+KV+V  + EV   D  +PA E 
Sbjct: 181 DIDYSTAESHTQYGVIGVKVWV-FKGEV--LDGVVPALEE 217


>gi|148545745|ref|YP_001265847.1| 30S ribosomal protein S3 [Pseudomonas putida F1]
 gi|161378146|ref|NP_742626.2| 30S ribosomal protein S3 [Pseudomonas putida KT2440]
 gi|167031506|ref|YP_001666737.1| 30S ribosomal protein S3 [Pseudomonas putida GB-1]
 gi|170723900|ref|YP_001751588.1| 30S ribosomal protein S3 [Pseudomonas putida W619]
 gi|325272013|ref|ZP_08138457.1| 30S ribosomal protein S3 [Pseudomonas sp. TJI-51]
 gi|34098362|sp|Q88QM9|RS3_PSEPK RecName: Full=30S ribosomal protein S3
 gi|172048429|sp|A5VXQ3|RS3_PSEP1 RecName: Full=30S ribosomal protein S3
 gi|148509803|gb|ABQ76663.1| SSU ribosomal protein S3P [Pseudomonas putida F1]
 gi|166857994|gb|ABY96401.1| ribosomal protein S3 [Pseudomonas putida GB-1]
 gi|169761903|gb|ACA75219.1| ribosomal protein S3 [Pseudomonas putida W619]
 gi|313496825|gb|ADR58191.1| RpsC [Pseudomonas putida BIRD-1]
 gi|324102844|gb|EGC00247.1| 30S ribosomal protein S3 [Pseudomonas sp. TJI-51]
          Length = 228

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/202 (55%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+     S W+A G+ Y   L +DLK REYLQ  LK A V++I I R 
Sbjct: 1   MGQKVHPTGIRLGIVKEHTSVWYADGATYADYLLKDLKTREYLQDKLKSASVSRIDIHRP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI +++ARPG++IGKKG D+EK+R+ L+      +H+++ E+ KPE++A L+AQS+
Sbjct: 61  AQTARITIHTARPGIVIGKKGEDVEKLRQDLTKQMGVPVHINIEEIRKPELDAMLVAQSV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+AMR GA G+K+  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A T YG  G+KV++
Sbjct: 181 DIDYNTYEAHTTYGVIGVKVWI 202


>gi|56461018|ref|YP_156299.1| ribosomal protein S3 [Idiomarina loihiensis L2TR]
 gi|61215389|sp|Q5QXY3|RS3_IDILO RecName: Full=30S ribosomal protein S3
 gi|56180028|gb|AAV82750.1| Ribosomal protein S3 [Idiomarina loihiensis L2TR]
          Length = 226

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/208 (52%), Positives = 158/208 (75%), Gaps = 1/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG++  WN+ W+A  +E+   LH D ++R++L   L+ A V++I+I+R 
Sbjct: 1   MGQKVHPNGIRLGISRPWNATWYANTNEFADNLHSDFQVRKFLNKELRNASVSRIVIDRP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK++S +T +   ++++EV KPE+++ L+A +I
Sbjct: 61  AKSVRVTIHTARPGVVIGKKGEDVEKLRKQVSKLTGAPAQINISEVRKPELDSQLVADNI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+A+R GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AGQLERRVMFRRAMKRAVQNAIRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T+ A T YG  G+KV++  R EV
Sbjct: 181 DIDYSTSEANTTYGIIGVKVWI-FRGEV 207


>gi|325577133|ref|ZP_08147617.1| 30S ribosomal protein S3 [Haemophilus parainfluenzae ATCC 33392]
 gi|301155336|emb|CBW14802.1| 30S ribosomal subunit protein S3 [Haemophilus parainfluenzae T3T1]
 gi|325160715|gb|EGC72836.1| 30S ribosomal protein S3 [Haemophilus parainfluenzae ATCC 33392]
          Length = 235

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 114/225 (50%), Positives = 155/225 (68%), Gaps = 1/225 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG+   WNS WFA   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVNPNGIRLGIVKPWNSTWFANTQDFADNLDGDFKVRKFLTKELANASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  +S +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVSQIAGVPAQINIAEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQSAMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQSAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDY TA A T YG  G+KV++  + E+    + +  +E +  +K
Sbjct: 181 DIDYNTAEAHTTYGVIGVKVWI-FKGEILGGMAAVAQSEQQPADK 224


>gi|218779756|ref|YP_002431074.1| ribosomal protein S3 [Desulfatibacillum alkenivorans AK-01]
 gi|226697696|sp|B8FES9|RS3_DESAA RecName: Full=30S ribosomal protein S3
 gi|218761140|gb|ACL03606.1| ribosomal protein S3 [Desulfatibacillum alkenivorans AK-01]
          Length = 219

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 114/220 (51%), Positives = 165/220 (75%), Gaps = 3/220 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+  TW+SRW+A   +Y   + ED K+R++L+  L  AG++KI IER+
Sbjct: 1   MGQKVNPIGLRLGIVKTWDSRWYAEKGKYAEFIREDFKLRKFLKKKLHHAGISKIEIERS 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  R+ V++ARPG++IGKKG++IE+++K+L  M ++E+ + + EV KPE++A L+A+++
Sbjct: 61  GRRVRLRVFAARPGIVIGKKGSEIEQLKKELEKMVDNEVLIDIQEVRKPELDAQLVAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMKR + SAMRFGA GVK++A+GRL GAE++R E Y EGR+PL TLRA
Sbjct: 121 AMQLERRVAFRRAMKRGISSAMRFGAQGVKIMAAGRLGGAEMARREWYREGRMPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV--SDSDSTIPAA 218
            IDYG   A T YG  G+KV++  + E+  SD+++  P A
Sbjct: 181 DIDYGYTEANTTYGVIGVKVFI-FKGEILKSDTEAANPTA 219


>gi|330814193|ref|YP_004358432.1| SSU ribosomal protein S3p (S3e) [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487288|gb|AEA81693.1| SSU ribosomal protein S3p (S3e) [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 226

 Score =  236 bits (603), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  RL +N  W+S WFA+   YG  L +D KIR+Y+  ++K +G+++ILIER 
Sbjct: 1   MGQKINPIGIRLKINRNWDSIWFAKKEAYGTYLIQDFKIRKYINANIKNSGISRILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K C + ++++RPG +IGKKG+DIEKI+  +  +   E+ +++ E+ KPE++A L+A++I
Sbjct: 61  SKKCNVTIFTSRPGFVIGKKGSDIEKIKSNIGKIVTDEVSVNIKEIRKPELDAYLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQ+E+R+ +R+AMKRA+QS MR GA G+KV+ SGRL G E++RTE   EG VPL TLRA
Sbjct: 121 AQQIEKRIAYRKAMKRAMQSTMRIGAKGIKVMISGRLAGNEIARTEWLREGSVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY    A T YG  GIKVY+
Sbjct: 181 EIDYAECEALTTYGIIGIKVYI 202


>gi|187734808|ref|YP_001876920.1| ribosomal protein S3 [Akkermansia muciniphila ATCC BAA-835]
 gi|226697659|sp|B2UMT3|RS3_AKKM8 RecName: Full=30S ribosomal protein S3
 gi|187424860|gb|ACD04139.1| ribosomal protein S3 [Akkermansia muciniphila ATCC BAA-835]
          Length = 229

 Score =  236 bits (603), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 114/220 (51%), Positives = 158/220 (71%), Gaps = 2/220 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI FRL VN  W S+W+A G +Y   LHEDL +R+Y++  L  A V+ I+IER 
Sbjct: 1   MGQKVNPIGFRLAVNKDWRSKWYATGQDYATKLHEDLVMRKYIKEQLMSAAVSSIVIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNM--TNSEIHLSVNEVPKPEINATLIAQ 118
             + RI V++ARPGL+IG+KG +IEKIR+ L  +   ++++++ + E+  PE +A LIA+
Sbjct: 61  WNSVRITVHTARPGLVIGRKGEEIEKIRQYLQGLCGASTQVNIDIVEIRSPETDAQLIAE 120

Query: 119 SIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTL 178
           ++A QLERRV FRRAMKRAVQ AM  GADG+++  +GRL GA+++R E Y EG+VPLQTL
Sbjct: 121 NVAVQLERRVSFRRAMKRAVQVAMERGADGIRIRCAGRLGGADIARAEWYREGKVPLQTL 180

Query: 179 RAHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAA 218
           R  IDYG A A T YG  G+K +V+ RDEV    ++ P+ 
Sbjct: 181 RTPIDYGFAEARTLYGIIGVKCWVNKRDEVVSQQNSRPSG 220


>gi|77165781|ref|YP_344306.1| 30S ribosomal protein S3 [Nitrosococcus oceani ATCC 19707]
 gi|254433894|ref|ZP_05047402.1| ribosomal protein S3 [Nitrosococcus oceani AFC27]
 gi|91207823|sp|Q3J8S0|RS3_NITOC RecName: Full=30S ribosomal protein S3
 gi|76884095|gb|ABA58776.1| SSU ribosomal protein S3P [Nitrosococcus oceani ATCC 19707]
 gi|207090227|gb|EDZ67498.1| ribosomal protein S3 [Nitrosococcus oceani AFC27]
          Length = 223

 Score =  236 bits (603), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 150/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS+W+A   ++  LL+ DL +R YL   L  A V+ I I+R 
Sbjct: 1   MGQKVHPTGIRLGIVKDWNSKWYADSGQFSELLNNDLAVRSYLAKKLSHALVSNIQIDRP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N RI +++ARPG++IGKKG DI  +R+++S M    +H+++ E+ KPE++ATL+A ++
Sbjct: 61  ARNARITIHTARPGIVIGKKGEDINNLRQEVSRMMGIPVHINIQEIRKPELDATLVAANV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKRAV +AMR GA G+++  SGRLNGAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRIMFRRAMKRAVTNAMRVGAQGIRIKVSGRLNGAEIARNEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A+T YG  G+KV++
Sbjct: 181 DIDYGFAEAKTTYGILGVKVWI 202


>gi|291286318|ref|YP_003503134.1| 30S ribosomal protein S3 [Denitrovibrio acetiphilus DSM 12809]
 gi|290883478|gb|ADD67178.1| ribosomal protein S3 [Denitrovibrio acetiphilus DSM 12809]
          Length = 217

 Score =  236 bits (603), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 114/213 (53%), Positives = 156/213 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP  FR+GVN  W S W+A   EY   L ED++IR++L+  L QAG+++I IER 
Sbjct: 1   MGQKVNPNGFRVGVNKPWKSVWYANKKEYRQQLLEDIRIRKFLKDRLMQAGLSRIGIERM 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               RI + ++RPG++IGKKG++I+K++K+L   T SE+ L + EV KPEINA L+A++I
Sbjct: 61  GTRVRITLNTSRPGIVIGKKGSEIDKLKKELKKFTKSEVLLVIREVKKPEINAVLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A Q++RRV FRRAMK+AV  AM+ GA G++V  +GRL GA+++RTE Y++GRVPLQTLRA
Sbjct: 121 AMQIQRRVAFRRAMKKAVLQAMKSGALGIRVACAGRLAGADMARTEWYIKGRVPLQTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDS 213
            IDYGT  A T YG  GIKV+V   + + D  S
Sbjct: 181 DIDYGTTEAMTTYGIIGIKVWVFTGEVLEDRKS 213


>gi|226942784|ref|YP_002797857.1| 30S ribosomal protein S3 [Azotobacter vinelandii DJ]
 gi|226717711|gb|ACO76882.1| 30S ribosomal protein S3 [Azotobacter vinelandii DJ]
          Length = 228

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P+  RLG+     S W+A    Y   L+ DLK+REYLQ  LK A V++I I R 
Sbjct: 1   MGQKVHPVGIRLGIVKEHTSVWYADRKNYADYLYADLKVREYLQDKLKSASVSRIDIARP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI +++ARPG++IGKKG D+EK+R+ L+      +H+++ E+ KPE+++ L+AQS+
Sbjct: 61  AQTARITIHTARPGIVIGKKGEDVEKLRQDLTKQMGVPVHINIEEIRKPELDSMLVAQSV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+AMR GA G+K+  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A T YG  G+KV++
Sbjct: 181 DIDYATYEAHTTYGVIGVKVWI 202


>gi|114561342|ref|YP_748855.1| 30S ribosomal protein S3 [Shewanella frigidimarina NCIMB 400]
 gi|122301110|sp|Q089P8|RS3_SHEFN RecName: Full=30S ribosomal protein S3
 gi|114332635|gb|ABI70017.1| SSU ribosomal protein S3P [Shewanella frigidimarina NCIMB 400]
          Length = 229

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 117/220 (53%), Positives = 157/220 (71%), Gaps = 3/220 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W S W+A  S+Y   L+ D ++R+YL   LK A V+KI+IER 
Sbjct: 1   MGQKVHPNGIRLGITKPWISTWYADKSDYANNLNSDWEVRQYLTEKLKAASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+E +R  +S +T +   +++ E+ KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEVLRAYVSKITGTTAQINIAEIRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRIGAQGIKVQVSGRLGGAEIARAEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEH 220
            IDY TA + T YG  GIKV++  + EV   D  +PA E 
Sbjct: 181 DIDYSTAESHTQYGVIGIKVWI-FKGEV--LDGLVPAIEE 217


>gi|239787569|emb|CAX84037.1| 30S ribosomal protein S3 [uncultured bacterium]
          Length = 214

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 114/216 (52%), Positives = 159/216 (73%), Gaps = 2/216 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG+  TW++RW+A    + +LL ED+K+RE+++  L+ A V+KI+IER 
Sbjct: 1   MGQKVHPTGFRLGITKTWDTRWYA-DKAFASLLLEDIKLREWIKKRLEHASVSKIIIERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  RI +++ARPG+IIGKKG DIEK++  ++ + N+E+ +++ EV KPE  A LIA+++
Sbjct: 60  AKKARINIHTARPGIIIGKKGADIEKLKNDIAKVANTEVAINIVEVRKPEAEAQLIAENV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQL RRV FRRAMKRAV SAMR GA G+++  +GRL G E++RTE Y EGRVPL TLRA
Sbjct: 120 AQQLVRRVAFRRAMKRAVTSAMRLGAMGIRINCAGRLGGGEIARTEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIP 216
            I+YG A A T YG  G+KV+V  + E+ D +   P
Sbjct: 180 DIEYGFADANTTYGVIGVKVWV-FKGEIIDREIRRP 214


>gi|170729003|ref|YP_001763029.1| 30S ribosomal protein S3 [Shewanella woodyi ATCC 51908]
 gi|169814350|gb|ACA88934.1| ribosomal protein S3 [Shewanella woodyi ATCC 51908]
          Length = 229

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 115/219 (52%), Positives = 159/219 (72%), Gaps = 3/219 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W S W+A  S+Y   L  D ++R++L+ +LKQA V+KI+IER 
Sbjct: 1   MGQKVHPNGIRLGITKPWISTWYADKSDYANNLTSDWEVRKFLEKNLKQASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +T     +++ E+ KPE++A L+A+ I
Sbjct: 61  AKSVRVTIHTARPGVVIGKKGEDVEKLRNAVAKLTGIPAQINIAEIRKPELDAKLVAEGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDY TA + T YG  G+KV+V  + EV   D  +PA E
Sbjct: 181 DIDYSTAESHTQYGVIGVKVWV-FKGEV--LDGVLPAHE 216


>gi|53803417|ref|YP_114782.1| 30S ribosomal protein S3 [Methylococcus capsulatus str. Bath]
 gi|61215439|sp|Q605B8|RS3_METCA RecName: Full=30S ribosomal protein S3
 gi|53757178|gb|AAU91469.1| ribosomal protein S3 [Methylococcus capsulatus str. Bath]
          Length = 223

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 110/216 (50%), Positives = 153/216 (70%), Gaps = 1/216 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG    W+SRWFA    Y   L+ DLK+RE+L+  LK A V++I I R 
Sbjct: 1   MGQKVNPTGIRLGYIKDWSSRWFADSKSYPVFLNNDLKVREFLKQKLKHASVSRIQINRL 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
             N +I +++ARPG++IGK+G DI+ +R+ +S      + +SV E+ KPE++A L+A+ +
Sbjct: 61  ANNAQITIHTARPGIVIGKRGEDIDALRRDVSRFMGVPVQVSVEEIRKPELDAQLVAEGV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+R++FRRAMKRAVQ+ +R GA+G+K+  +GRLNGAE++RTE Y EGRVPL T RA
Sbjct: 121 AQQLEKRIMFRRAMKRAVQNTLRVGAEGIKISVAGRLNGAEIARTEWYREGRVPLHTFRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIP 216
            IDYG A A T YG  G+KV++  + EV +   T P
Sbjct: 181 DIDYGFAEAVTTYGVIGVKVWI-FKGEVFEPVHTEP 215


>gi|28867860|ref|NP_790479.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|66047769|ref|YP_237610.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. syringae B728a]
 gi|71736756|ref|YP_276700.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|77461294|ref|YP_350801.1| 30S ribosomal protein S3 [Pseudomonas fluorescens Pf0-1]
 gi|213969220|ref|ZP_03397358.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. tomato T1]
 gi|229592897|ref|YP_002875016.1| 30S ribosomal protein S3 [Pseudomonas fluorescens SBW25]
 gi|237797438|ref|ZP_04585899.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|257483191|ref|ZP_05637232.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289623843|ref|ZP_06456797.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648936|ref|ZP_06480279.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|289675494|ref|ZP_06496384.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. syringae FF5]
 gi|301381727|ref|ZP_07230145.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. tomato Max13]
 gi|302061073|ref|ZP_07252614.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. tomato K40]
 gi|302130786|ref|ZP_07256776.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|302189283|ref|ZP_07265956.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. syringae 642]
 gi|312963362|ref|ZP_07777845.1| ribosomal protein S3 [Pseudomonas fluorescens WH6]
 gi|330812069|ref|YP_004356531.1| 30S ribosomal protein S3 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|34098361|sp|Q889W5|RS3_PSESM RecName: Full=30S ribosomal protein S3
 gi|81307864|sp|Q4ZMQ0|RS3_PSEU2 RecName: Full=30S ribosomal protein S3
 gi|91207830|sp|Q48D42|RS3_PSE14 RecName: Full=30S ribosomal protein S3
 gi|91207833|sp|Q3K5Z4|RS3_PSEPF RecName: Full=30S ribosomal protein S3
 gi|28851096|gb|AAO54174.1| ribosomal protein S3 [Pseudomonas syringae pv. tomato str. DC3000]
 gi|63258476|gb|AAY39572.1| ribosomal protein S3 [Pseudomonas syringae pv. syringae B728a]
 gi|71557309|gb|AAZ36520.1| ribosomal protein S3 [Pseudomonas syringae pv. phaseolicola 1448A]
 gi|77385297|gb|ABA76810.1| 30S ribosomal protein S3 [Pseudomonas fluorescens Pf0-1]
 gi|213925898|gb|EEB59455.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. tomato T1]
 gi|229364763|emb|CAY52756.1| 30S ribosomal protein S3 [Pseudomonas fluorescens SBW25]
 gi|311282442|gb|EFQ61040.1| ribosomal protein S3 [Pseudomonas fluorescens WH6]
 gi|320322316|gb|EFW78410.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320331974|gb|EFW87910.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|327380177|gb|AEA71527.1| 30S ribosomal protein S3 [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|330869425|gb|EGH04134.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330879375|gb|EGH13524.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. glycinea str.
           race 4]
 gi|330879436|gb|EGH13585.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330891925|gb|EGH24586.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. mori str.
           301020]
 gi|330899731|gb|EGH31150.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. japonica str.
           M301072PT]
 gi|330944849|gb|EGH46717.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. pisi str. 1704B]
 gi|330962519|gb|EGH62779.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. maculicola str.
           ES4326]
 gi|330966905|gb|EGH67165.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. actinidiae str.
           M302091]
 gi|330969815|gb|EGH69881.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. aceris str.
           M302273PT]
 gi|330976646|gb|EGH76690.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. aptata str. DSM
           50252]
 gi|330988276|gb|EGH86379.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. lachrymans str.
           M301315]
 gi|331012419|gb|EGH92475.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331018166|gb|EGH98222.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. lachrymans str.
           M302278PT]
 gi|331020288|gb|EGI00345.1| 30S ribosomal protein S3 [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 228

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/202 (54%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLG+     S W+A G  Y   L  DLK+REYLQ  LK A V++I I R 
Sbjct: 1   MGQKVHPIGIRLGIVKEHTSVWYADGRTYADYLFADLKVREYLQDKLKSASVSRIDIHRP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI +++ARPG++IGKKG D+EK+R+ L+      +H+++ E+ KPE++  L+AQS+
Sbjct: 61  AQTARITIHTARPGIVIGKKGEDVEKLRQDLTKQMGVPVHINIEEIRKPELDGMLVAQSV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+AMR GA G+K+  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY    A T YG  G+KV++
Sbjct: 181 DIDYANYEAHTTYGVIGVKVWI 202


>gi|156932240|ref|YP_001436156.1| 30S ribosomal protein S3 [Cronobacter sakazakii ATCC BAA-894]
 gi|260599633|ref|YP_003212204.1| 30S ribosomal protein S3 [Cronobacter turicensis z3032]
 gi|189044981|sp|A7MPI5|RS3_ENTS8 RecName: Full=30S ribosomal protein S3
 gi|156530494|gb|ABU75320.1| hypothetical protein ESA_00011 [Cronobacter sakazakii ATCC BAA-894]
 gi|260218810|emb|CBA34161.1| 30S ribosomal protein S3 [Cronobacter turicensis z3032]
          Length = 233

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   E+   L  D K+R+YL   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLNKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKGVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|330953191|gb|EGH53451.1| 30S ribosomal protein S3 [Pseudomonas syringae Cit 7]
          Length = 228

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/202 (54%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLG+     S W+A G  Y   L  DLK+REYLQ  LK A V++I I R 
Sbjct: 1   MGQKVHPIGIRLGIVKEHTSVWYADGRTYADYLFADLKVREYLQNKLKSASVSRIDIHRP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI +++ARPG++IGKKG D+EK+R+ L+      +H+++ E+ KPE++  L+AQS+
Sbjct: 61  AQTARITIHTARPGIVIGKKGEDVEKLRQDLTKQMGVPVHINIEEIRKPELDGMLVAQSV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+AMR GA G+K+  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY    A T YG  G+KV++
Sbjct: 181 DIDYANYEAHTTYGVIGVKVWI 202


>gi|268680581|ref|YP_003305012.1| ribosomal protein S3 [Sulfurospirillum deleyianum DSM 6946]
 gi|268618612|gb|ACZ12977.1| ribosomal protein S3 [Sulfurospirillum deleyianum DSM 6946]
          Length = 237

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/202 (54%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W+SRWF         + ED KIR +L+  L  AGV++ILIERT
Sbjct: 1   MGQKVNPIGLRLGINRNWDSRWFPGKQTLATSIGEDYKIRTFLKKELYYAGVSQILIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPG+IIGKKG+DIEK+R KLS + N ++++++ E  +P+ +A L A+++
Sbjct: 61  AKKLRVTVVAARPGIIIGKKGSDIEKLRLKLSKLINKDVNVNIKEERRPQSSAQLCAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK+ +Q A + GA G+K+  +GRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 AMQLERRVAFRRAMKKVIQGAQKSGAKGIKISVAGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAHTTYGVIGVKVWI 202


>gi|146328784|ref|YP_001210145.1| 30S ribosomal protein S3 [Dichelobacter nodosus VCS1703A]
 gi|172047328|sp|A5EX93|RS3_DICNV RecName: Full=30S ribosomal protein S3
 gi|146232254|gb|ABQ13232.1| 30S ribosomal protein S3 [Dichelobacter nodosus VCS1703A]
          Length = 239

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 150/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+PI FRLGV+  W S+W+A G++Y   L +D ++RE+L+  L  A V+KI IER 
Sbjct: 1   MGQKIHPIGFRLGVSKDWTSKWYAEGTDYANYLEKDFEVREFLRKKLAHASVSKIQIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I +++ARPG++IGKKG DIE ++K++  +      +++ E+ +PE+++ L+A +I
Sbjct: 61  RNGAQITIFTARPGIVIGKKGEDIEILKKEVGKILGVATSINIEEIRRPELDSYLVADNI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLERRV+FRRAMKRAV S MR GA GVKV  SGRLNGAE++RTE Y EGRVPL TLRA
Sbjct: 121 AKQLERRVMFRRAMKRAVASTMRLGAVGVKVSISGRLNGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 DIDYGLAEAYTTYGVIGVKVWI 202


>gi|104779761|ref|YP_606259.1| 30S ribosomal protein S3 [Pseudomonas entomophila L48]
 gi|123381068|sp|Q1IFW0|RS3_PSEE4 RecName: Full=30S ribosomal protein S3
 gi|95108748|emb|CAK13442.1| 30S ribosomal subunit protein S3 [Pseudomonas entomophila L48]
          Length = 228

 Score =  236 bits (601), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/202 (54%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+     S W+A G+ Y   L +DL+ REYLQ  LK A V++I I R 
Sbjct: 1   MGQKVHPTGIRLGIVKEHTSVWYADGATYADYLLKDLQTREYLQDKLKSASVSRIDIHRP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI +++ARPG++IGKKG D+EK+R+ L+      +H+++ E+ KPE++A L+AQS+
Sbjct: 61  AQTARITIHTARPGIVIGKKGEDVEKLRQDLTKQMGVPVHINIEEIRKPELDAMLVAQSV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+AMR GA G+K+  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A T YG  G+KV++
Sbjct: 181 DIDYNTYEAHTTYGVIGVKVWI 202


>gi|183600747|ref|ZP_02962240.1| hypothetical protein PROSTU_04341 [Providencia stuartii ATCC 25827]
 gi|188019725|gb|EDU57765.1| hypothetical protein PROSTU_04341 [Providencia stuartii ATCC 25827]
          Length = 233

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 112/219 (51%), Positives = 157/219 (71%), Gaps = 1/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A  +E+   L  D K+R+YL   L +A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWYANTNEFADNLDSDYKVRQYLNKELAKASISRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKTVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDY T+ A T YG  G+KV++  + E+    + +  AE
Sbjct: 181 DIDYNTSEAHTTYGVLGVKVWI-FKGEILGGMAAVEQAE 218


>gi|225850741|ref|YP_002730975.1| ribosomal protein S3 [Persephonella marina EX-H1]
 gi|254764539|sp|C0QQM9|RS3_PERMH RecName: Full=30S ribosomal protein S3
 gi|225646450|gb|ACO04636.1| ribosomal protein S3 [Persephonella marina EX-H1]
          Length = 227

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 107/216 (49%), Positives = 160/216 (74%), Gaps = 1/216 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI FRLGV   W S+WFA   +YG LLHED+KIR++++   KQAG+A ++IER 
Sbjct: 1   MGQKVHPIGFRLGVTKDWKSKWFADKKKYGQLLHEDVKIRKFVEERYKQAGIADVIIERL 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNS-EIHLSVNEVPKPEINATLIAQS 119
            +  RI + +++PG++IG+KG ++E++ K L  +TN+ ++ ++V+EV KPE+NA L+A+ 
Sbjct: 61  GEKVRIKILASKPGIVIGRKGAEVEELNKVLQAVTNAKDVTVNVDEVKKPELNAKLVAED 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IA QLERRV  RRAMKRA+ +AM+ GA G+KV   GR+ G +L+R E ++ GR+PLQT+R
Sbjct: 121 IALQLERRVSHRRAMKRAIDNAMKAGAKGIKVQVGGRIGGVDLARKEWFMAGRMPLQTIR 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
           A IDYGTA A T YG  G+KV++   D++++    +
Sbjct: 181 ADIDYGTARASTKYGILGVKVWIYKGDKLAEQKEEV 216


>gi|146308917|ref|YP_001189382.1| 30S ribosomal protein S3 [Pseudomonas mendocina ymp]
 gi|330505201|ref|YP_004382070.1| 30S ribosomal protein S3 [Pseudomonas mendocina NK-01]
 gi|172046042|sp|A4XZ84|RS3_PSEMY RecName: Full=30S ribosomal protein S3
 gi|145577118|gb|ABP86650.1| SSU ribosomal protein S3P [Pseudomonas mendocina ymp]
 gi|328919487|gb|AEB60318.1| 30S ribosomal protein S3 [Pseudomonas mendocina NK-01]
          Length = 228

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P+  RLG+     S W+A G  Y   L+ DLK+R YLQ  LK A V++I I R 
Sbjct: 1   MGQKVHPVGIRLGIVKDHTSVWYADGRNYADYLNADLKVRAYLQDKLKSASVSRIDIARP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI +++ARPG++IGKKG D+EK+R+ L+      +H+++ E+ KPE++  L+AQS+
Sbjct: 61  AQTARITIHTARPGIVIGKKGEDVEKLRQDLTKQMGVPVHINIEEIRKPELDGMLVAQSV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+AMR GA G+K+  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A T YG  G+KV++
Sbjct: 181 DIDYATYEAHTTYGVIGVKVWI 202


>gi|15833433|ref|NP_312206.1| 30S ribosomal protein S3 [Escherichia coli O157:H7 str. Sakai]
 gi|16131193|ref|NP_417773.1| 30S ribosomal subunit protein S3 [Escherichia coli str. K-12
           substr. MG1655]
 gi|16762849|ref|NP_458466.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16766723|ref|NP_462338.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|26249904|ref|NP_755944.1| 30S ribosomal protein S3 [Escherichia coli CFT073]
 gi|29144336|ref|NP_807678.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|30065385|ref|NP_839556.1| 30S ribosomal protein S3 [Shigella flexneri 2a str. 2457T]
 gi|56415353|ref|YP_152428.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62181938|ref|YP_218355.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|74313833|ref|YP_312252.1| 30S ribosomal protein S3 [Shigella sonnei Ss046]
 gi|82545677|ref|YP_409624.1| 30S ribosomal protein S3 [Shigella boydii Sb227]
 gi|82778610|ref|YP_404959.1| 30S ribosomal protein S3 [Shigella dysenteriae Sd197]
 gi|89110696|ref|AP_004476.1| 30S ribosomal subunit protein S3 [Escherichia coli str. K-12
           substr. W3110]
 gi|91212747|ref|YP_542733.1| 30S ribosomal protein S3 [Escherichia coli UTI89]
 gi|110643553|ref|YP_671283.1| 30S ribosomal protein S3 [Escherichia coli 536]
 gi|110807162|ref|YP_690682.1| 30S ribosomal protein S3 [Shigella flexneri 5 str. 8401]
 gi|117625593|ref|YP_858916.1| 30S ribosomal protein S3 [Escherichia coli APEC O1]
 gi|146313379|ref|YP_001178453.1| 30S ribosomal protein S3 [Enterobacter sp. 638]
 gi|157148891|ref|YP_001456209.1| 30S ribosomal protein S3 [Citrobacter koseri ATCC BAA-895]
 gi|157157923|ref|YP_001464782.1| 30S ribosomal protein S3 [Escherichia coli E24377A]
 gi|157162788|ref|YP_001460106.1| 30S ribosomal protein S3 [Escherichia coli HS]
 gi|161506014|ref|YP_001573126.1| 30S ribosomal protein S3 [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|161616460|ref|YP_001590425.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|168468007|ref|ZP_02701844.1| ribosomal protein S3 [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|168753080|ref|ZP_02778087.1| ribosomal protein S3 [Escherichia coli O157:H7 str. EC4401]
 gi|168769178|ref|ZP_02794185.1| ribosomal protein S3 [Escherichia coli O157:H7 str. EC4486]
 gi|168784357|ref|ZP_02809364.1| ribosomal protein S3 [Escherichia coli O157:H7 str. EC4076]
 gi|170018450|ref|YP_001723404.1| 30S ribosomal protein S3 [Escherichia coli ATCC 8739]
 gi|170683377|ref|YP_001745576.1| 30S ribosomal protein S3 [Escherichia coli SMS-3-5]
 gi|170769550|ref|ZP_02904003.1| ribosomal protein S3 [Escherichia albertii TW07627]
 gi|187732278|ref|YP_001881998.1| 30S ribosomal protein S3 [Shigella boydii CDC 3083-94]
 gi|188492004|ref|ZP_02999274.1| ribosomal protein S3 [Escherichia coli 53638]
 gi|191174669|ref|ZP_03036144.1| ribosomal protein S3 [Escherichia coli F11]
 gi|194445051|ref|YP_002042684.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451812|ref|YP_002047457.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194737846|ref|YP_002116376.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195939863|ref|ZP_03085245.1| 30S ribosomal protein S3 [Escherichia coli O157:H7 str. EC4024]
 gi|197249433|ref|YP_002148353.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197264520|ref|ZP_03164594.1| ribosomal protein S3 [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197364283|ref|YP_002143920.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|198242497|ref|YP_002217396.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200388649|ref|ZP_03215261.1| ribosomal protein S3 [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205354938|ref|YP_002228739.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207858676|ref|YP_002245327.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|208806555|ref|ZP_03248892.1| ribosomal protein S3 [Escherichia coli O157:H7 str. EC4206]
 gi|208811995|ref|ZP_03253324.1| ribosomal protein S3 [Escherichia coli O157:H7 str. EC4045]
 gi|208821473|ref|ZP_03261793.1| ribosomal protein S3 [Escherichia coli O157:H7 str. EC4042]
 gi|209400495|ref|YP_002272770.1| ribosomal protein S3 [Escherichia coli O157:H7 str. EC4115]
 gi|209920780|ref|YP_002294864.1| 30S ribosomal protein S3 [Escherichia coli SE11]
 gi|213161928|ref|ZP_03347638.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213417257|ref|ZP_03350401.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213425756|ref|ZP_03358506.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213581214|ref|ZP_03363040.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213612415|ref|ZP_03370241.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213646530|ref|ZP_03376583.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|215488614|ref|YP_002331045.1| 30S ribosomal protein S3 [Escherichia coli O127:H6 str. E2348/69]
 gi|217324648|ref|ZP_03440732.1| ribosomal protein S3 [Escherichia coli O157:H7 str. TW14588]
 gi|218550589|ref|YP_002384380.1| 30S ribosomal protein S3 [Escherichia fergusonii ATCC 35469]
 gi|218555871|ref|YP_002388784.1| 30S ribosomal protein S3 [Escherichia coli IAI1]
 gi|218560375|ref|YP_002393288.1| 30S ribosomal protein S3 [Escherichia coli S88]
 gi|218691600|ref|YP_002399812.1| 30S ribosomal protein S3 [Escherichia coli ED1a]
 gi|218697006|ref|YP_002404673.1| 30S ribosomal protein S3 [Escherichia coli 55989]
 gi|218702076|ref|YP_002409705.1| 30S ribosomal protein S3 [Escherichia coli IAI39]
 gi|218706921|ref|YP_002414440.1| 30S ribosomal protein S3 [Escherichia coli UMN026]
 gi|224585229|ref|YP_002639028.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|227883445|ref|ZP_04001250.1| 30S ribosomal protein S3 [Escherichia coli 83972]
 gi|237703044|ref|ZP_04533525.1| 30S ribosomal subunit protein S3 [Escherichia sp. 3_2_53FAA]
 gi|237728649|ref|ZP_04559130.1| 30S ribosomal protein S3 [Citrobacter sp. 30_2]
 gi|238902405|ref|YP_002928201.1| 30S ribosomal subunit protein S3 [Escherichia coli BW2952]
 gi|238913851|ref|ZP_04657688.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|253771862|ref|YP_003034693.1| 30S ribosomal protein S3 [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254038475|ref|ZP_04872531.1| 30S ribosomal subunit protein S3 [Escherichia sp. 1_1_43]
 gi|254163242|ref|YP_003046350.1| 30S ribosomal protein S3 [Escherichia coli B str. REL606]
 gi|254795251|ref|YP_003080088.1| 30S ribosomal protein S3 [Escherichia coli O157:H7 str. TW14359]
 gi|256020673|ref|ZP_05434538.1| 30S ribosomal protein S3 [Shigella sp. D9]
 gi|256025958|ref|ZP_05439823.1| 30S ribosomal protein S3 [Escherichia sp. 4_1_40B]
 gi|260846112|ref|YP_003223890.1| 30S ribosomal subunit protein S3 [Escherichia coli O103:H2 str.
           12009]
 gi|260857435|ref|YP_003231326.1| 30S ribosomal subunit protein S3 [Escherichia coli O26:H11 str.
           11368]
 gi|260870057|ref|YP_003236459.1| 30S ribosomal subunit protein S3 [Escherichia coli O111:H- str.
           11128]
 gi|261224619|ref|ZP_05938900.1| 30S ribosomal subunit protein S3 [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254487|ref|ZP_05947020.1| 30S ribosomal subunit protein S3 [Escherichia coli O157:H7 str.
           FRIK966]
 gi|261342784|ref|ZP_05970642.1| ribosomal protein S3 [Enterobacter cancerogenus ATCC 35316]
 gi|283788050|ref|YP_003367915.1| 30S ribosomal subunit protein S3 [Citrobacter rodentium ICC168]
 gi|283835731|ref|ZP_06355472.1| hypothetical protein CIT292_10123 [Citrobacter youngae ATCC 29220]
 gi|291284672|ref|YP_003501490.1| 30S ribosomal protein S3 [Escherichia coli O55:H7 str. CB9615]
 gi|293406911|ref|ZP_06650835.1| 30S ribosomal protein S3 [Escherichia coli FVEC1412]
 gi|293412733|ref|ZP_06655401.1| 30S ribosomal protein S3 [Escherichia coli B354]
 gi|293416731|ref|ZP_06659368.1| 30S ribosomal protein S3 [Escherichia coli B185]
 gi|293453632|ref|ZP_06664051.1| 30S ribosomal protein S3 [Escherichia coli B088]
 gi|296105022|ref|YP_003615168.1| 30S ribosomal protein S3 [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|297516602|ref|ZP_06934988.1| 30S ribosomal protein S3 [Escherichia coli OP50]
 gi|298382651|ref|ZP_06992246.1| 30S ribosomal protein S3 [Escherichia coli FVEC1302]
 gi|300815476|ref|ZP_07095701.1| ribosomal protein S3 [Escherichia coli MS 107-1]
 gi|300822883|ref|ZP_07103019.1| ribosomal protein S3 [Escherichia coli MS 119-7]
 gi|300896662|ref|ZP_07115178.1| ribosomal protein S3 [Escherichia coli MS 198-1]
 gi|300903562|ref|ZP_07121484.1| ribosomal protein S3 [Escherichia coli MS 84-1]
 gi|300918287|ref|ZP_07134891.1| ribosomal protein S3 [Escherichia coli MS 115-1]
 gi|300921877|ref|ZP_07138033.1| ribosomal protein S3 [Escherichia coli MS 182-1]
 gi|300932207|ref|ZP_07147486.1| ribosomal protein S3 [Escherichia coli MS 187-1]
 gi|300935312|ref|ZP_07150322.1| ribosomal protein S3 [Escherichia coli MS 21-1]
 gi|300946536|ref|ZP_07160801.1| ribosomal protein S3 [Escherichia coli MS 116-1]
 gi|300954811|ref|ZP_07167238.1| ribosomal protein S3 [Escherichia coli MS 175-1]
 gi|300973993|ref|ZP_07172400.1| ribosomal protein S3 [Escherichia coli MS 200-1]
 gi|300979885|ref|ZP_07174761.1| ribosomal protein S3 [Escherichia coli MS 45-1]
 gi|301018822|ref|ZP_07183066.1| ribosomal protein S3 [Escherichia coli MS 69-1]
 gi|301021136|ref|ZP_07185176.1| ribosomal protein S3 [Escherichia coli MS 196-1]
 gi|301046085|ref|ZP_07193263.1| ribosomal protein S3 [Escherichia coli MS 185-1]
 gi|301305523|ref|ZP_07211615.1| ribosomal protein S3 [Escherichia coli MS 124-1]
 gi|301325119|ref|ZP_07218653.1| ribosomal protein S3 [Escherichia coli MS 78-1]
 gi|301643866|ref|ZP_07243897.1| ribosomal protein S3 [Escherichia coli MS 146-1]
 gi|306816343|ref|ZP_07450481.1| 30S ribosomal protein S3 [Escherichia coli NC101]
 gi|307139997|ref|ZP_07499353.1| 30S ribosomal protein S3 [Escherichia coli H736]
 gi|307315107|ref|ZP_07594690.1| ribosomal protein S3 [Escherichia coli W]
 gi|309785636|ref|ZP_07680267.1| ribosomal protein S3 [Shigella dysenteriae 1617]
 gi|309794589|ref|ZP_07689011.1| ribosomal protein S3 [Escherichia coli MS 145-7]
 gi|312968361|ref|ZP_07782571.1| ribosomal protein S3 [Escherichia coli 2362-75]
 gi|312972425|ref|ZP_07786599.1| ribosomal protein S3 [Escherichia coli 1827-70]
 gi|331644010|ref|ZP_08345139.1| ribosomal protein S3 [Escherichia coli H736]
 gi|331649111|ref|ZP_08350197.1| ribosomal protein S3 [Escherichia coli M605]
 gi|331654907|ref|ZP_08355906.1| ribosomal protein S3 [Escherichia coli M718]
 gi|331659604|ref|ZP_08360542.1| ribosomal protein S3 [Escherichia coli TA206]
 gi|331664927|ref|ZP_08365828.1| ribosomal protein S3 [Escherichia coli TA143]
 gi|331670143|ref|ZP_08370982.1| ribosomal protein S3 [Escherichia coli TA271]
 gi|331674817|ref|ZP_08375574.1| ribosomal protein S3 [Escherichia coli TA280]
 gi|331679383|ref|ZP_08380053.1| ribosomal protein S3 [Escherichia coli H591]
 gi|331684956|ref|ZP_08385542.1| ribosomal protein S3 [Escherichia coli H299]
 gi|62287194|sp|Q5PIV8|RS3_SALPA RecName: Full=30S ribosomal protein S3
 gi|62288973|sp|P0A7V3|RS3_ECOLI RecName: Full=30S ribosomal protein S3
 gi|62288974|sp|P0A7V4|RS3_ECOL6 RecName: Full=30S ribosomal protein S3
 gi|62288975|sp|P0A7V5|RS3_ECO57 RecName: Full=30S ribosomal protein S3
 gi|62288976|sp|P0A7V6|RS3_SALTY RecName: Full=30S ribosomal protein S3
 gi|62288977|sp|P0A7V7|RS3_SALTI RecName: Full=30S ribosomal protein S3
 gi|75505516|sp|Q57J38|RS3_SALCH RecName: Full=30S ribosomal protein S3
 gi|91207838|sp|Q31VW2|RS3_SHIBS RecName: Full=30S ribosomal protein S3
 gi|91207839|sp|Q32B37|RS3_SHIDS RecName: Full=30S ribosomal protein S3
 gi|91207840|sp|Q3YWU5|RS3_SHISS RecName: Full=30S ribosomal protein S3
 gi|122366320|sp|Q0SZY8|RS3_SHIF8 RecName: Full=30S ribosomal protein S3
 gi|122957942|sp|Q0TCE7|RS3_ECOL5 RecName: Full=30S ribosomal protein S3
 gi|122990715|sp|Q1R612|RS3_ECOUT RecName: Full=30S ribosomal protein S3
 gi|152060860|sp|A1AGK2|RS3_ECOK1 RecName: Full=30S ribosomal protein S3
 gi|189044965|sp|A8AQL0|RS3_CITK8 RecName: Full=30S ribosomal protein S3
 gi|189044977|sp|A7ZSK3|RS3_ECO24 RecName: Full=30S ribosomal protein S3
 gi|189044978|sp|A8A5B9|RS3_ECOHS RecName: Full=30S ribosomal protein S3
 gi|189044979|sp|B1IPY5|RS3_ECOLC RecName: Full=30S ribosomal protein S3
 gi|189044980|sp|A4WFC2|RS3_ENT38 RecName: Full=30S ribosomal protein S3
 gi|189045331|sp|A9MN54|RS3_SALAR RecName: Full=30S ribosomal protein S3
 gi|189045332|sp|A9MSZ2|RS3_SALPB RecName: Full=30S ribosomal protein S3
 gi|226697702|sp|B7MCS9|RS3_ECO45 RecName: Full=30S ribosomal protein S3
 gi|226697703|sp|B5YTN5|RS3_ECO5E RecName: Full=30S ribosomal protein S3
 gi|226697704|sp|B7NLN3|RS3_ECO7I RecName: Full=30S ribosomal protein S3
 gi|226697705|sp|B7M1M8|RS3_ECO8A RecName: Full=30S ribosomal protein S3
 gi|226697706|sp|B7NDT5|RS3_ECOLU RecName: Full=30S ribosomal protein S3
 gi|226697707|sp|B6I228|RS3_ECOSE RecName: Full=30S ribosomal protein S3
 gi|226697708|sp|B1LHC8|RS3_ECOSM RecName: Full=30S ribosomal protein S3
 gi|226697711|sp|B7LRT0|RS3_ESCF3 RecName: Full=30S ribosomal protein S3
 gi|226697752|sp|B5F7T9|RS3_SALA4 RecName: Full=30S ribosomal protein S3
 gi|226697753|sp|B5FJK8|RS3_SALDC RecName: Full=30S ribosomal protein S3
 gi|226697754|sp|B5R285|RS3_SALEP RecName: Full=30S ribosomal protein S3
 gi|226697755|sp|B5RH21|RS3_SALG2 RecName: Full=30S ribosomal protein S3
 gi|226697756|sp|B4TKK9|RS3_SALHS RecName: Full=30S ribosomal protein S3
 gi|226697757|sp|B4SUT4|RS3_SALNS RecName: Full=30S ribosomal protein S3
 gi|226697758|sp|B5BGY0|RS3_SALPK RecName: Full=30S ribosomal protein S3
 gi|226697759|sp|B4TXD6|RS3_SALSV RecName: Full=30S ribosomal protein S3
 gi|226697760|sp|B2U2T2|RS3_SHIB3 RecName: Full=30S ribosomal protein S3
 gi|254764529|sp|B7UK38|RS3_ECO27 RecName: Full=30S ribosomal protein S3
 gi|254764530|sp|B7L4K3|RS3_ECO55 RecName: Full=30S ribosomal protein S3
 gi|254764531|sp|B7N198|RS3_ECO81 RecName: Full=30S ribosomal protein S3
 gi|254764544|sp|C0Q0B0|RS3_SALPC RecName: Full=30S ribosomal protein S3
 gi|259495244|sp|C4ZUG9|RS3_ECOBW RecName: Full=30S ribosomal protein S3
 gi|25294476|pir||AG1006 30S ribosomal chain protein S3 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|116666550|pdb|1VS5|C Chain C, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With The Antibiotic
           Kasugamyin At 3.5a Resolution. This File Contains The
           30s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes And Is Described In
           Remark 400.
 gi|116666602|pdb|1VS7|C Chain C, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With The Antibiotic
           Kasugamyin At 3.5a Resolution. This File Contains The
           30s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes And Is Described In
           Remark 400.
 gi|256032364|pdb|3E1A|O Chain O, Structure Of The 30s Subunit And The Trnas Of E. Coli
           Ribosome In Pre-Accommodation State
 gi|256032421|pdb|3E1C|O Chain O, Structure Of The 30s Subunit And The Trnas Of E. Coli
           Ribosome In Post-Accommodation State
 gi|257097324|pdb|3I1M|C Chain C, Crystal Structure Of The E. Coli 70s Ribosome In An
           Intermediate State Of Ratcheting
 gi|257097376|pdb|3I1O|C Chain C, Crystal Structure Of The E. Coli 70s Ribosome In An
           Intermediate State Of Ratcheting
 gi|257097428|pdb|3I1Q|C Chain C, Crystal Structure Of The E. Coli 70s Ribosome In An
           Intermediate State Of Ratcheting
 gi|257097482|pdb|3I1S|C Chain C, Crystal Structure Of The E. Coli 70s Ribosome In An
           Intermediate State Of Ratcheting
 gi|257097536|pdb|3I1Z|C Chain C, Crystal Structure Of The E. Coli 70s Ribosome In An
           Intermediate State Of Ratcheting
 gi|257097591|pdb|3I21|C Chain C, Crystal Structure Of The E. Coli 70s Ribosome In An
           Intermediate State Of Ratcheting
 gi|290560309|pdb|3KC4|C Chain C, Ribosome-Secy Complex. This Entry 3kc4 Contains 30s
           Ribosomal Subnit. The 50s Ribosomal Subunit Can Be Found
           In Pdb Entry 3kcr
 gi|308198689|pdb|3OR9|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
           Cem-101. This File Contains The 30s Subunit Of The First
           70s Ribosome.
 gi|308198710|pdb|3ORA|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
           Cem-101. This File Contains The 30s Subunit Of The
           Second 70s Ribosome.
 gi|326634281|pdb|3IZV|G Chain G, Structural Insights Into Cognate Vs. Near-Cognate
           Discrimination During Decoding. This Entry Contains The
           Small Subunit Of A Ribosome Programmed With A
           Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
           Ef-Tu
 gi|326634306|pdb|3IZW|G Chain G, Structural Insights Into Cognate Vs. Near-Cognate
           Discrimination During Decoding.This Entry Contains The
           Small Subunit Of A Ribosome Programmed With A Cognate
           Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
 gi|26110332|gb|AAN82518.1|AE016767_278 30S ribosomal protein S3 [Escherichia coli CFT073]
 gi|42832|emb|CAA26466.1| unnamed protein product [Escherichia coli]
 gi|606248|gb|AAA58111.1| 30S ribosomal subunit protein S3 [Escherichia coli str. K-12
           substr. MG1655]
 gi|1789710|gb|AAC76339.1| 30S ribosomal subunit protein S3 [Escherichia coli str. K-12
           substr. MG1655]
 gi|13363652|dbj|BAB37602.1| 30S ribosomal subunit protein S3 [Escherichia coli O157:H7 str.
           Sakai]
 gi|16421991|gb|AAL22297.1| 30S ribosomal subunit protein S3 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16505155|emb|CAD08179.1| 30S ribosomal subunit protein S3 [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139974|gb|AAO71538.1| 30S ribosomal subunit protein S3 [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|30043647|gb|AAP19367.1| 30S ribosomal subunit protein S3 [Shigella flexneri 2a str. 2457T]
 gi|56129610|gb|AAV79116.1| 30S ribosomal subunit protein S3 [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62129571|gb|AAX67274.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|73857310|gb|AAZ90017.1| 30S ribosomal subunit protein S3 [Shigella sonnei Ss046]
 gi|81242758|gb|ABB63468.1| 30S ribosomal subunit protein S3 [Shigella dysenteriae Sd197]
 gi|81247088|gb|ABB67796.1| 30S ribosomal subunit protein S3 [Shigella boydii Sb227]
 gi|85676727|dbj|BAE77977.1| 30S ribosomal subunit protein S3 [Escherichia coli str. K12 substr.
           W3110]
 gi|91074321|gb|ABE09202.1| 30S ribosomal subunit protein S3 [Escherichia coli UTI89]
 gi|110345145|gb|ABG71382.1| 30S ribosomal protein S3 [Escherichia coli 536]
 gi|110616710|gb|ABF05377.1| 30S ribosomal subunit protein S3 [Shigella flexneri 5 str. 8401]
 gi|115514717|gb|ABJ02792.1| 30S ribosomal subunit protein S3 [Escherichia coli APEC O1]
 gi|145320255|gb|ABP62402.1| SSU ribosomal protein S3P [Enterobacter sp. 638]
 gi|157068468|gb|ABV07723.1| ribosomal protein S3 [Escherichia coli HS]
 gi|157079953|gb|ABV19661.1| ribosomal protein S3 [Escherichia coli E24377A]
 gi|157086096|gb|ABV15774.1| hypothetical protein CKO_04729 [Citrobacter koseri ATCC BAA-895]
 gi|160867361|gb|ABX23984.1| hypothetical protein SARI_04195 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161365824|gb|ABX69592.1| hypothetical protein SPAB_04275 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|169753378|gb|ACA76077.1| ribosomal protein S3 [Escherichia coli ATCC 8739]
 gi|170121607|gb|EDS90538.1| ribosomal protein S3 [Escherichia albertii TW07627]
 gi|170521095|gb|ACB19273.1| ribosomal protein S3 [Escherichia coli SMS-3-5]
 gi|187429270|gb|ACD08544.1| ribosomal protein S3 [Shigella boydii CDC 3083-94]
 gi|188487203|gb|EDU62306.1| ribosomal protein S3 [Escherichia coli 53638]
 gi|188998459|gb|EDU67457.1| ribosomal protein S3 [Escherichia coli O157:H7 str. EC4076]
 gi|189358885|gb|EDU77304.1| ribosomal protein S3 [Escherichia coli O157:H7 str. EC4401]
 gi|189361723|gb|EDU80142.1| ribosomal protein S3 [Escherichia coli O157:H7 str. EC4486]
 gi|190905052|gb|EDV64716.1| ribosomal protein S3 [Escherichia coli F11]
 gi|194403714|gb|ACF63936.1| ribosomal protein S3 [Salmonella enterica subsp. enterica serovar
           Newport str. SL254]
 gi|194410116|gb|ACF70335.1| ribosomal protein S3 [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194713348|gb|ACF92569.1| ribosomal protein S3 [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|195628911|gb|EDX48321.1| ribosomal protein S3 [Salmonella enterica subsp. enterica serovar
           Newport str. SL317]
 gi|197095760|emb|CAR61330.1| 30S ribosomal subunit protein S3 [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197213136|gb|ACH50533.1| ribosomal protein S3 [Salmonella enterica subsp. enterica serovar
           Agona str. SL483]
 gi|197242775|gb|EDY25395.1| ribosomal protein S3 [Salmonella enterica subsp. enterica serovar
           Saintpaul str. SARA23]
 gi|197937013|gb|ACH74346.1| ribosomal protein S3 [Salmonella enterica subsp. enterica serovar
           Dublin str. CT_02021853]
 gi|199605747|gb|EDZ04292.1| ribosomal protein S3 [Salmonella enterica subsp. enterica serovar
           Virchow str. SL491]
 gi|205274719|emb|CAR39775.1| 30S ribosomal subunit protein S3 [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|206710479|emb|CAR34837.1| 30S ribosomal subunit protein S3 [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|208726356|gb|EDZ75957.1| ribosomal protein S3 [Escherichia coli O157:H7 str. EC4206]
 gi|208733272|gb|EDZ81959.1| ribosomal protein S3 [Escherichia coli O157:H7 str. EC4045]
 gi|208741596|gb|EDZ89278.1| ribosomal protein S3 [Escherichia coli O157:H7 str. EC4042]
 gi|209161895|gb|ACI39328.1| ribosomal protein S3 [Escherichia coli O157:H7 str. EC4115]
 gi|209757098|gb|ACI76861.1| 30S ribosomal subunit protein S3 [Escherichia coli]
 gi|209757100|gb|ACI76862.1| 30S ribosomal subunit protein S3 [Escherichia coli]
 gi|209757102|gb|ACI76863.1| 30S ribosomal subunit protein S3 [Escherichia coli]
 gi|209757104|gb|ACI76864.1| 30S ribosomal subunit protein S3 [Escherichia coli]
 gi|209757106|gb|ACI76865.1| 30S ribosomal subunit protein S3 [Escherichia coli]
 gi|209914039|dbj|BAG79113.1| 30S ribosomal protein S3 [Escherichia coli SE11]
 gi|215266686|emb|CAS11125.1| 30S ribosomal subunit protein S3 [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217320869|gb|EEC29293.1| ribosomal protein S3 [Escherichia coli O157:H7 str. TW14588]
 gi|218353738|emb|CAV00027.1| 30S ribosomal subunit protein S3 [Escherichia coli 55989]
 gi|218358130|emb|CAQ90777.1| 30S ribosomal subunit protein S3 [Escherichia fergusonii ATCC
           35469]
 gi|218362639|emb|CAR00265.1| 30S ribosomal subunit protein S3 [Escherichia coli IAI1]
 gi|218367144|emb|CAR04918.1| 30S ribosomal subunit protein S3 [Escherichia coli S88]
 gi|218372062|emb|CAR19922.1| 30S ribosomal subunit protein S3 [Escherichia coli IAI39]
 gi|218429164|emb|CAR10116.2| 30S ribosomal subunit protein S3 [Escherichia coli ED1a]
 gi|218434018|emb|CAR14935.1| 30S ribosomal subunit protein S3 [Escherichia coli UMN026]
 gi|222035023|emb|CAP77766.1| 30S ribosomal protein S3 [Escherichia coli LF82]
 gi|224469757|gb|ACN47587.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|226838981|gb|EEH71004.1| 30S ribosomal subunit protein S3 [Escherichia sp. 1_1_43]
 gi|226902308|gb|EEH88567.1| 30S ribosomal subunit protein S3 [Escherichia sp. 3_2_53FAA]
 gi|226909271|gb|EEH95189.1| 30S ribosomal protein S3 [Citrobacter sp. 30_2]
 gi|227839589|gb|EEJ50055.1| 30S ribosomal protein S3 [Escherichia coli 83972]
 gi|238859798|gb|ACR61796.1| 30S ribosomal subunit protein S3 [Escherichia coli BW2952]
 gi|242378841|emb|CAQ33633.1| 30S ribosomal subunit protein S3, subunit of 30S ribosomal subunit
           and ribosome [Escherichia coli BL21(DE3)]
 gi|253322906|gb|ACT27508.1| ribosomal protein S3 [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975143|gb|ACT40814.1| 30S ribosomal protein S3 [Escherichia coli B str. REL606]
 gi|253979299|gb|ACT44969.1| 30S ribosomal protein S3 [Escherichia coli BL21(DE3)]
 gi|254594651|gb|ACT74012.1| 30S ribosomal subunit protein S3 [Escherichia coli O157:H7 str.
           TW14359]
 gi|257756084|dbj|BAI27586.1| 30S ribosomal subunit protein S3 [Escherichia coli O26:H11 str.
           11368]
 gi|257761259|dbj|BAI32756.1| 30S ribosomal subunit protein S3 [Escherichia coli O103:H2 str.
           12009]
 gi|257766413|dbj|BAI37908.1| 30S ribosomal subunit protein S3 [Escherichia coli O111:H- str.
           11128]
 gi|260447667|gb|ACX38089.1| ribosomal protein S3 [Escherichia coli DH1]
 gi|261248590|emb|CBG26428.1| 30S ribosomal subunit protein S3 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995643|gb|ACY90528.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|281180349|dbj|BAI56679.1| 30S ribosomal protein S3 [Escherichia coli SE15]
 gi|282951504|emb|CBG91203.1| 30S ribosomal subunit protein S3 [Citrobacter rodentium ICC168]
 gi|284923320|emb|CBG36414.1| 30S ribosomal subunit protein S3 [Escherichia coli 042]
 gi|288314962|gb|EFC53900.1| ribosomal protein S3 [Enterobacter cancerogenus ATCC 35316]
 gi|290764545|gb|ADD58506.1| 30S ribosomal protein S3 [Escherichia coli O55:H7 str. CB9615]
 gi|291068410|gb|EFE06519.1| ribosomal protein S3 [Citrobacter youngae ATCC 29220]
 gi|291321758|gb|EFE61189.1| 30S ribosomal protein S3 [Escherichia coli B088]
 gi|291425722|gb|EFE98756.1| 30S ribosomal protein S3 [Escherichia coli FVEC1412]
 gi|291431307|gb|EFF04292.1| 30S ribosomal protein S3 [Escherichia coli B185]
 gi|291468380|gb|EFF10873.1| 30S ribosomal protein S3 [Escherichia coli B354]
 gi|294489965|gb|ADE88721.1| ribosomal protein S3 [Escherichia coli IHE3034]
 gi|295059481|gb|ADF64219.1| 30S ribosomal protein S3 [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295096955|emb|CBK86045.1| SSU ribosomal protein S3P [Enterobacter cloacae subsp. cloacae NCTC
           9394]
 gi|298276487|gb|EFI18005.1| 30S ribosomal protein S3 [Escherichia coli FVEC1302]
 gi|299881666|gb|EFI89877.1| ribosomal protein S3 [Escherichia coli MS 196-1]
 gi|300301911|gb|EFJ58296.1| ribosomal protein S3 [Escherichia coli MS 185-1]
 gi|300309003|gb|EFJ63523.1| ribosomal protein S3 [Escherichia coli MS 200-1]
 gi|300318240|gb|EFJ68024.1| ribosomal protein S3 [Escherichia coli MS 175-1]
 gi|300359493|gb|EFJ75363.1| ribosomal protein S3 [Escherichia coli MS 198-1]
 gi|300399532|gb|EFJ83070.1| ribosomal protein S3 [Escherichia coli MS 69-1]
 gi|300404435|gb|EFJ87973.1| ribosomal protein S3 [Escherichia coli MS 84-1]
 gi|300409396|gb|EFJ92934.1| ribosomal protein S3 [Escherichia coli MS 45-1]
 gi|300414548|gb|EFJ97858.1| ribosomal protein S3 [Escherichia coli MS 115-1]
 gi|300421725|gb|EFK05036.1| ribosomal protein S3 [Escherichia coli MS 182-1]
 gi|300453782|gb|EFK17402.1| ribosomal protein S3 [Escherichia coli MS 116-1]
 gi|300459468|gb|EFK22961.1| ribosomal protein S3 [Escherichia coli MS 21-1]
 gi|300460031|gb|EFK23524.1| ribosomal protein S3 [Escherichia coli MS 187-1]
 gi|300524649|gb|EFK45718.1| ribosomal protein S3 [Escherichia coli MS 119-7]
 gi|300532368|gb|EFK53430.1| ribosomal protein S3 [Escherichia coli MS 107-1]
 gi|300839218|gb|EFK66978.1| ribosomal protein S3 [Escherichia coli MS 124-1]
 gi|300847998|gb|EFK75758.1| ribosomal protein S3 [Escherichia coli MS 78-1]
 gi|301077769|gb|EFK92575.1| ribosomal protein S3 [Escherichia coli MS 146-1]
 gi|301159977|emb|CBW19496.1| 30S ribosomal subunit protein S3 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|305850739|gb|EFM51196.1| 30S ribosomal protein S3 [Escherichia coli NC101]
 gi|306905456|gb|EFN35991.1| ribosomal protein S3 [Escherichia coli W]
 gi|307555402|gb|ADN48177.1| 30S ribosomal protein S3 [Escherichia coli ABU 83972]
 gi|307628349|gb|ADN72653.1| 30S ribosomal protein S3 [Escherichia coli UM146]
 gi|308121639|gb|EFO58901.1| ribosomal protein S3 [Escherichia coli MS 145-7]
 gi|308926756|gb|EFP72232.1| ribosomal protein S3 [Shigella dysenteriae 1617]
 gi|310334802|gb|EFQ01007.1| ribosomal protein S3 [Escherichia coli 1827-70]
 gi|312287186|gb|EFR15096.1| ribosomal protein S3 [Escherichia coli 2362-75]
 gi|312914457|dbj|BAJ38431.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|312947865|gb|ADR28692.1| 30S ribosomal protein S3 [Escherichia coli O83:H1 str. NRG 857C]
 gi|313647376|gb|EFS11828.1| ribosomal protein S3 [Shigella flexneri 2a str. 2457T]
 gi|315062606|gb|ADT76933.1| 30S ribosomal subunit protein S3 [Escherichia coli W]
 gi|315137889|dbj|BAJ45048.1| 30S ribosomal protein S3 [Escherichia coli DH1]
 gi|315255897|gb|EFU35865.1| ribosomal protein S3 [Escherichia coli MS 85-1]
 gi|315284611|gb|EFU44056.1| ribosomal protein S3 [Escherichia coli MS 110-3]
 gi|315292369|gb|EFU51721.1| ribosomal protein S3 [Escherichia coli MS 153-1]
 gi|315298612|gb|EFU57867.1| ribosomal protein S3 [Escherichia coli MS 16-3]
 gi|315616991|gb|EFU97603.1| ribosomal protein S3 [Escherichia coli 3431]
 gi|320087879|emb|CBY97642.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|320180148|gb|EFW55087.1| SSU ribosomal protein S3p (S3e) [Shigella boydii ATCC 9905]
 gi|320187032|gb|EFW61744.1| SSU ribosomal protein S3p (S3e) [Shigella flexneri CDC 796-83]
 gi|320191655|gb|EFW66305.1| SSU ribosomal protein S3p (S3e) [Escherichia coli O157:H7 str.
           EC1212]
 gi|320199498|gb|EFW74088.1| SSU ribosomal protein S3p (S3e) [Escherichia coli EC4100B]
 gi|320639619|gb|EFX09213.1| 30S ribosomal protein S3 [Escherichia coli O157:H7 str. G5101]
 gi|320645117|gb|EFX14133.1| 30S ribosomal protein S3 [Escherichia coli O157:H- str. 493-89]
 gi|320650428|gb|EFX18894.1| 30S ribosomal protein S3 [Escherichia coli O157:H- str. H 2687]
 gi|320655953|gb|EFX23873.1| 30S ribosomal protein S3 [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320661405|gb|EFX28820.1| 30S ribosomal protein S3 [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666427|gb|EFX33410.1| 30S ribosomal protein S3 [Escherichia coli O157:H7 str. LSU-61]
 gi|321226481|gb|EFX51531.1| SSU ribosomal protein S3p (S3e) [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322615025|gb|EFY11949.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617312|gb|EFY14213.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625534|gb|EFY22359.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322626376|gb|EFY23185.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322632112|gb|EFY28865.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635009|gb|EFY31732.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643290|gb|EFY39857.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646626|gb|EFY43133.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322649972|gb|EFY46391.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322652689|gb|EFY49029.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659554|gb|EFY55798.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665504|gb|EFY61691.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322670398|gb|EFY66537.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322670471|gb|EFY66605.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322675047|gb|EFY71130.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681584|gb|EFY77613.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685928|gb|EFY81917.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322716425|gb|EFZ07996.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323131792|gb|ADX19222.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|323154152|gb|EFZ40355.1| ribosomal protein S3 [Escherichia coli EPECa14]
 gi|323162993|gb|EFZ48828.1| ribosomal protein S3 [Escherichia coli E128010]
 gi|323164878|gb|EFZ50669.1| ribosomal protein S3 [Shigella sonnei 53G]
 gi|323173950|gb|EFZ59578.1| ribosomal protein S3 [Escherichia coli LT-68]
 gi|323179150|gb|EFZ64724.1| ribosomal protein S3 [Escherichia coli 1180]
 gi|323182792|gb|EFZ68193.1| ribosomal protein S3 [Escherichia coli 1357]
 gi|323189081|gb|EFZ74365.1| ribosomal protein S3 [Escherichia coli RN587/1]
 gi|323194036|gb|EFZ79236.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196446|gb|EFZ81597.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323202315|gb|EFZ87360.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323207336|gb|EFZ92286.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211228|gb|EFZ96073.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216063|gb|EGA00794.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323223446|gb|EGA07774.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323226824|gb|EGA11014.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323231814|gb|EGA15924.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233233|gb|EGA17328.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237300|gb|EGA21365.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245535|gb|EGA29534.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249041|gb|EGA32963.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250664|gb|EGA34545.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256893|gb|EGA40607.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323263042|gb|EGA46589.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266042|gb|EGA49537.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272799|gb|EGA56202.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|323376807|gb|ADX49075.1| ribosomal protein S3 [Escherichia coli KO11]
 gi|323934488|gb|EGB30896.1| ribosomal protein S3 [Escherichia coli E1520]
 gi|323939264|gb|EGB35476.1| ribosomal protein S3 [Escherichia coli E482]
 gi|323944265|gb|EGB40341.1| ribosomal protein S3 [Escherichia coli H120]
 gi|323950228|gb|EGB46110.1| ribosomal protein S3 [Escherichia coli H252]
 gi|323954563|gb|EGB50346.1| ribosomal protein S3 [Escherichia coli H263]
 gi|323959535|gb|EGB55188.1| ribosomal protein S3 [Escherichia coli H489]
 gi|323966276|gb|EGB61711.1| ribosomal protein S3 [Escherichia coli M863]
 gi|323970118|gb|EGB65392.1| ribosomal protein S3 [Escherichia coli TA007]
 gi|323974733|gb|EGB69846.1| ribosomal protein S3 [Escherichia coli TW10509]
 gi|324009005|gb|EGB78224.1| ribosomal protein S3 [Escherichia coli MS 57-2]
 gi|324014930|gb|EGB84149.1| ribosomal protein S3 [Escherichia coli MS 60-1]
 gi|324017868|gb|EGB87087.1| ribosomal protein S3 [Escherichia coli MS 117-3]
 gi|324111993|gb|EGC05972.1| ribosomal protein S3 [Escherichia fergusonii B253]
 gi|324116296|gb|EGC10216.1| ribosomal protein S3 [Escherichia coli E1167]
 gi|325498880|gb|EGC96739.1| 30S ribosomal protein S3 [Escherichia fergusonii ECD227]
 gi|326342559|gb|EGD66333.1| SSU ribosomal protein S3p (S3e) [Escherichia coli O157:H7 str.
           1044]
 gi|326344546|gb|EGD68295.1| SSU ribosomal protein S3p (S3e) [Escherichia coli O157:H7 str.
           1125]
 gi|326625177|gb|EGE31522.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326630087|gb|EGE36430.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
 gi|327250962|gb|EGE62655.1| ribosomal protein S3 [Escherichia coli STEC_7v]
 gi|330909356|gb|EGH37870.1| SSU ribosomal protein S3p (S3e) [Escherichia coli AA86]
 gi|331036304|gb|EGI08530.1| ribosomal protein S3 [Escherichia coli H736]
 gi|331041609|gb|EGI13753.1| ribosomal protein S3 [Escherichia coli M605]
 gi|331046922|gb|EGI19000.1| ribosomal protein S3 [Escherichia coli M718]
 gi|331052819|gb|EGI24852.1| ribosomal protein S3 [Escherichia coli TA206]
 gi|331057437|gb|EGI29423.1| ribosomal protein S3 [Escherichia coli TA143]
 gi|331062205|gb|EGI34125.1| ribosomal protein S3 [Escherichia coli TA271]
 gi|331067726|gb|EGI39124.1| ribosomal protein S3 [Escherichia coli TA280]
 gi|331072555|gb|EGI43880.1| ribosomal protein S3 [Escherichia coli H591]
 gi|331077327|gb|EGI48539.1| ribosomal protein S3 [Escherichia coli H299]
 gi|332085465|gb|EGI90631.1| ribosomal protein S3 [Shigella boydii 5216-82]
 gi|332086053|gb|EGI91217.1| ribosomal protein S3 [Shigella dysenteriae 155-74]
 gi|332090373|gb|EGI95471.1| ribosomal protein S3 [Shigella boydii 3594-74]
 gi|332104221|gb|EGJ07567.1| 30S ribosomal protein S3 [Shigella sp. D9]
          Length = 233

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   E+   L  D K+R+YL   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|311277731|ref|YP_003939962.1| ribosomal protein S3 [Enterobacter cloacae SCF1]
 gi|308746926|gb|ADO46678.1| ribosomal protein S3 [Enterobacter cloacae SCF1]
          Length = 232

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   E+   L  D K+R+YL   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|309703726|emb|CBJ03067.1| 30S ribosomal subunit protein S3 [Escherichia coli ETEC H10407]
          Length = 232

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   E+   L  D K+R+YL   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|294142927|ref|YP_003558905.1| 30S ribosomal protein S3 [Shewanella violacea DSS12]
 gi|293329396|dbj|BAJ04127.1| ribosomal protein S3 [Shewanella violacea DSS12]
          Length = 229

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 115/219 (52%), Positives = 157/219 (71%), Gaps = 3/219 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W S W+A  S+Y   L+ D ++R++L+  LKQA V+KI+IER 
Sbjct: 1   MGQKVHPNGIRLGITKPWISTWYADKSDYANNLNSDWEVRKFLEKKLKQASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +T     +++ E+ KPE++A L+A  I
Sbjct: 61  AKSVRVTIHTARPGVVIGKKGEDVEKLRNAVAKLTGIPAQINIAEIRKPELDAKLVADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQSAMR GA G+KV  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQSAMRLGAKGIKVQVSGRLGGAEIARYEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDY TA + T YG  G+KV++  + EV   D  +PA E
Sbjct: 181 DIDYSTAESHTQYGVIGVKVWI-FKGEV--LDGIVPAHE 216


>gi|71891981|ref|YP_277711.1| 30S ribosomal protein S3 [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|91207640|sp|Q493K2|RS3_BLOPB RecName: Full=30S ribosomal protein S3
 gi|71796087|gb|AAZ40838.1| 30S ribosomal subunit protein S3 [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 236

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 114/202 (56%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+  TW+S W+A   ++   L  D K+R +L   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGVRLGITKTWHSTWYANNKDFSDNLGNDFKVRHFLMQKLSKALVSRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ VY+ARPGLIIGKKG DIEK+RK ++ ++     L++ EV KPE++A L+A +I
Sbjct: 61  AKSIRVTVYTARPGLIIGKKGEDIEKLRKNIARISGVPTQLNIAEVRKPELDAKLLADNI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRVVFRRAMKR VQ+AMR GA G+KV  SGRL+GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLERRVVFRRAMKRVVQNAMRLGAKGIKVEVSGRLSGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY  + A T YG  GIKV+V
Sbjct: 181 DIDYSLSEARTTYGIIGIKVWV 202


>gi|119773360|ref|YP_926100.1| 30S ribosomal protein S3 [Shewanella amazonensis SB2B]
 gi|152060903|sp|A1S224|RS3_SHEAM RecName: Full=30S ribosomal protein S3
 gi|119765860|gb|ABL98430.1| SSU ribosomal protein S3P [Shewanella amazonensis SB2B]
          Length = 230

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 112/210 (53%), Positives = 156/210 (74%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W S W+A  S+Y   LH D ++R++L+  L+ A V+KI+IER 
Sbjct: 1   MGQKVHPNGIRLGITKPWISTWYADKSDYANNLHSDWEVRKFLEKKLEAASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+E +R +++ ++ +   +++ E+ KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEVLRAEVAKISGTPAQINIAEIRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRIGAQGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            IDY T+ + T YG  GIKV+V  + EV D
Sbjct: 181 DIDYATSESHTTYGVIGIKVWV-FKGEVLD 209


>gi|213861394|ref|ZP_03385864.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 220

 Score =  235 bits (600), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   E+   L  D K+R+YL   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|70732876|ref|YP_262644.1| 30S ribosomal protein S3 [Pseudomonas fluorescens Pf-5]
 gi|91207831|sp|Q4K539|RS3_PSEF5 RecName: Full=30S ribosomal protein S3
 gi|68347175|gb|AAY94781.1| ribosomal protein S3 [Pseudomonas fluorescens Pf-5]
          Length = 228

 Score =  235 bits (599), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 111/202 (54%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLG+     S W+A G  Y   L  DL +REYLQ  LK A V++I I R 
Sbjct: 1   MGQKVHPIGIRLGIVKEHTSVWYADGRTYADYLLADLNVREYLQDKLKSASVSRIDIHRP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI +++ARPG++IGKKG D+EK+R+ L+      +H+++ E+ KPE++  L+AQS+
Sbjct: 61  AQTARITIHTARPGIVIGKKGEDVEKLRQDLTKQMGVPVHINIEEIRKPELDGMLVAQSV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+AMR GA G+K+  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A T YG  G+KV++
Sbjct: 181 DIDYATYEAHTTYGVIGVKVWI 202


>gi|163752600|ref|ZP_02159779.1| ribosomal protein S3 [Shewanella benthica KT99]
 gi|161327512|gb|EDP98719.1| ribosomal protein S3 [Shewanella benthica KT99]
          Length = 229

 Score =  235 bits (599), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 115/219 (52%), Positives = 156/219 (71%), Gaps = 3/219 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W S W+A  S+Y   L+ D ++R+YL+  LKQA V+KI+IER 
Sbjct: 1   MGQKVHPNGIRLGITKPWISTWYADKSDYAKNLNSDWEVRKYLEKKLKQASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +T     +++ E+ KPE++A L+A  I
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRNAVAKLTGIPAQINIAEIRKPELDAKLVADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R E Y EGRVPL T RA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVQVSGRLGGAEIARYEWYREGRVPLHTFRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDY TA + T YG  G+KV+V  + EV   D  +PA E
Sbjct: 181 DIDYSTAESHTQYGVIGVKVWV-FKGEV--LDGVVPAHE 216


>gi|212708987|ref|ZP_03317115.1| hypothetical protein PROVALCAL_00019 [Providencia alcalifaciens DSM
           30120]
 gi|261346929|ref|ZP_05974573.1| ribosomal protein S3 [Providencia rustigianii DSM 4541]
 gi|212688353|gb|EEB47881.1| hypothetical protein PROVALCAL_00019 [Providencia alcalifaciens DSM
           30120]
 gi|282564994|gb|EFB70529.1| ribosomal protein S3 [Providencia rustigianii DSM 4541]
          Length = 233

 Score =  235 bits (599), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/219 (50%), Positives = 157/219 (71%), Gaps = 1/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A  +E+   L  D K+R+YL   L +A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWYANTNEFADNLDSDFKVRQYLNKELAKASISRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKTVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           + QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 SSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDY T+ A T YG  G+KV++  + E+    + +  AE
Sbjct: 181 DIDYNTSEAHTTYGVLGVKVWI-FKGEILGGMAAVEQAE 218


>gi|301057494|ref|ZP_07198590.1| ribosomal protein S3 [delta proteobacterium NaphS2]
 gi|300448422|gb|EFK12091.1| ribosomal protein S3 [delta proteobacterium NaphS2]
          Length = 219

 Score =  235 bits (599), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 150/202 (74%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI FRLG+   W+SRW+A GS+Y   ++ED KIRE+L+  + QAGV+KI IER 
Sbjct: 1   MGQKVHPISFRLGIIRNWDSRWYA-GSQYSTFVYEDFKIREFLKKRVYQAGVSKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               RI +++ARPG++IGKKG +IEK ++ L  M   ++ L + EV K E++A L+A+++
Sbjct: 60  ASKVRIRMHTARPGIVIGKKGVEIEKTKRDLEKMIKRDVILDIQEVRKAEVDAQLVAENV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK++V SA+RFGA G+K+  +GRL GAE++R E Y EGRVPL T+RA
Sbjct: 120 ATQLERRVAFRRAMKKSVTSALRFGAQGIKIACAGRLGGAEMARREWYREGRVPLHTIRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV +
Sbjct: 180 DIDYGFAQAYTTYGVIGVKVTI 201


>gi|289811445|ref|ZP_06542074.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 212

 Score =  235 bits (599), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   E+   L  D K+R+YL   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|320173955|gb|EFW49131.1| SSU ribosomal protein S3p (S3e) [Shigella dysenteriae CDC 74-1112]
          Length = 233

 Score =  235 bits (599), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   E+   L  D K+R+YL   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAYTTYGVIGVKVWI 202


>gi|254449319|ref|ZP_05062764.1| ribosomal protein S3 [gamma proteobacterium HTCC5015]
 gi|198261078|gb|EDY85378.1| ribosomal protein S3 [gamma proteobacterium HTCC5015]
          Length = 228

 Score =  235 bits (599), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 111/216 (51%), Positives = 157/216 (72%), Gaps = 4/216 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NP   RLG+   W ++W+A   EY   L+ D+++R++++  L+QA V++I IER 
Sbjct: 1   MGHKVNPTGIRLGIATDWTAKWYAERGEYAENLYSDIQVRDFIRKRLEQAAVSRIQIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRK---KLSNMTNSEIHLSVNEVPKPEINATLIA 117
            K   I +++ARPG++IGKKG DIE++R+   KL  +    I +++ E+ KPE++ATL A
Sbjct: 61  AKQAVITIHTARPGVVIGKKGEDIERLRQEVAKLMQVPPQAIKVNIEEIRKPELDATLTA 120

Query: 118 QSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQT 177
           QS+AQQLERR++FRRAM+RAV +AMR GA G+K+   GRLNGAE++RTE Y EGRVPL T
Sbjct: 121 QSVAQQLERRIMFRRAMRRAVGNAMRLGAQGIKINVGGRLNGAEIARTEWYREGRVPLHT 180

Query: 178 LRAHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDS 213
           LRA IDYGTA A T YG  G+KV++  + EV D ++
Sbjct: 181 LRADIDYGTAEASTTYGIIGVKVWI-YKGEVFDFEA 215


>gi|226329487|ref|ZP_03805005.1| hypothetical protein PROPEN_03396 [Proteus penneri ATCC 35198]
 gi|225202673|gb|EEG85027.1| hypothetical protein PROPEN_03396 [Proteus penneri ATCC 35198]
          Length = 224

 Score =  235 bits (599), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 112/219 (51%), Positives = 157/219 (71%), Gaps = 1/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A  +E+   L  D K+R+YL   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWYAGTNEFADNLDSDFKVRQYLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKNVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDY T+ A+T YG  G+KV++  + E+    + +  AE
Sbjct: 181 DIDYNTSEAQTTYGVLGVKVWI-FKGEILGGMAAVEQAE 218


>gi|126666807|ref|ZP_01737784.1| 30S ribosomal protein S3 [Marinobacter sp. ELB17]
 gi|126628852|gb|EAZ99472.1| 30S ribosomal protein S3 [Marinobacter sp. ELB17]
          Length = 227

 Score =  235 bits (599), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 153/202 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI FRLGV    NS W+A   +Y   L  D+++RE+L   L +A V+KI+IER 
Sbjct: 1   MGHKVNPIGFRLGVIKEHNSVWYADKKDYAKNLLNDIQVREFLDKRLVKASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N RI +++ARPG++IGKKG D++++R+++S+M    +H+++ EV KP+++A L+AQ++
Sbjct: 61  AQNARITIHTARPGIVIGKKGEDVDRLRREVSDMMGVPVHINIEEVRKPDLDARLVAQNV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+K+   GRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 AGQLERRVMFRRAMKRAVQNAMRQGAKGIKIQVGGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYGT  A T YG  G+KV++
Sbjct: 181 DIDYGTYEAHTTYGVIGVKVWI 202


>gi|237753017|ref|ZP_04583497.1| 30s ribosomal protein s3 [Helicobacter winghamensis ATCC BAA-430]
 gi|229375284|gb|EEO25375.1| 30s ribosomal protein s3 [Helicobacter winghamensis ATCC BAA-430]
          Length = 235

 Score =  235 bits (599), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF   +     + ED KIR++L+  L  A V+ ILIERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPAFNSAPQNIAEDYKIRKFLKKELYYASVSDILIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPG+IIGKKG D+EK+++ L  + N +I +++ EV KP+ NA L A+S+
Sbjct: 61  AKKVRVTVVAARPGIIIGKKGADVEKLKESLKKIVNKDIFINIKEVKKPQSNAQLAAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK+ +Q A++ GA G+KV  SGRL GAE++RTE Y+EGR+PL TLRA
Sbjct: 121 ATQLERRIAFRRAMKKVMQGAIKSGAKGIKVRVSGRLAGAEMARTEWYMEGRIPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG+ G+KV++
Sbjct: 181 KIDYGFAEALTTYGNIGVKVWI 202


>gi|220903940|ref|YP_002479252.1| ribosomal protein S3 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254764527|sp|B8IYH8|RS3_DESDA RecName: Full=30S ribosomal protein S3
 gi|219868239|gb|ACL48574.1| ribosomal protein S3 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 213

 Score =  235 bits (599), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 114/212 (53%), Positives = 152/212 (71%), Gaps = 2/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG N  W SRWF++  EY A ++ED KIR +++  L  AG++KI IER 
Sbjct: 1   MGQKVHPFGFRLGYNKNWQSRWFSK-KEYPAFVYEDSKIRAFVKKLLYHAGLSKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+I+ +ARPG++IG+KG +IEK+R  L      E  L VNE+ +PE++A L+A++I
Sbjct: 60  GGKVRLILSTARPGIVIGRKGVEIEKLRNDLRQKFGREFSLEVNEIRRPEVDAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKR V  A +FG +G+KV  SGRL GAE++RTE Y +GRVPLQTLRA
Sbjct: 120 AQQLERRVAFRRAMKRTVSMARKFGGEGIKVTCSGRLAGAEIARTEWYRDGRVPLQTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYG A A T YG  G+KV++  + E+ D +
Sbjct: 180 DIDYGFAEARTTYGIIGVKVWI-YKGEILDKE 210


>gi|218672112|ref|ZP_03521781.1| 30S ribosomal protein S3 [Rhizobium etli GR56]
          Length = 190

 Score =  234 bits (598), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 114/173 (65%), Positives = 143/173 (82%), Gaps = 3/173 (1%)

Query: 55  ILIERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINAT 114
           ++IER HK CR+ ++SARPGLIIG+KG DI+K+RKKLS+MTNSE HL++ EV KPE++AT
Sbjct: 1   MVIERPHKKCRVTIHSARPGLIIGRKGADIDKLRKKLSDMTNSETHLNIVEVRKPEVDAT 60

Query: 115 LIAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVP 174
           L+AQSIAQQLERRV FRRAMKRAVQSAMR GA+G+K+  +GRL GAE++RTE Y EGRVP
Sbjct: 61  LVAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIKITCAGRLGGAEIARTEWYREGRVP 120

Query: 175 LQTLRAHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
           L TLRA IDYGTA AETA+G CGIKV++  + E+ + D    A+E R +E D+
Sbjct: 121 LHTLRADIDYGTAEAETAFGICGIKVWI-FKGEILEHDPM--ASERRALEGDA 170


>gi|300718699|ref|YP_003743502.1| 30S ribosomal protein S3 [Erwinia billingiae Eb661]
 gi|299064535|emb|CAX61655.1| 30S ribosomal protein S3 [Erwinia billingiae Eb661]
          Length = 232

 Score =  234 bits (598), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   E+   L  D K+R++L   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKAWNSTWFANTKEFADNLDSDFKVRQFLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|313673461|ref|YP_004051572.1| SSU ribosomal protein s3p [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940217|gb|ADR19409.1| SSU ribosomal protein S3P [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 219

 Score =  234 bits (598), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 154/202 (76%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK +PI  R+G+N TW S W+A   +Y   L ED+KIR+YL+  L QAG++ I IER 
Sbjct: 1   MGQKAHPIGLRIGINKTWKSVWYANKRDYRKNLSEDIKIRKYLKKKLNQAGISSIEIERM 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  R+ + ++RPG++IGKKG +I+K+++ L   TN+++ +++ EV KPEI+ATLIA++I
Sbjct: 61  GQKMRVNLNTSRPGIVIGKKGAEIDKLKQDLKAYTNADVQINIREVKKPEIDATLIAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A Q+ERR+ FRRAMK+AV  A++ GA G+KV  SGRL GA+++RTE Y++GRVPLQTLRA
Sbjct: 121 ALQIERRIAFRRAMKKAVVQALKSGALGIKVSCSGRLAGADMARTEWYIKGRVPLQTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYGTA A T YG  G+KV+V
Sbjct: 181 DIDYGTADAMTTYGIIGVKVWV 202


>gi|255020771|ref|ZP_05292829.1| SSU ribosomal protein S3p (S3e) [Acidithiobacillus caldus ATCC
           51756]
 gi|254969767|gb|EET27271.1| SSU ribosomal protein S3p (S3e) [Acidithiobacillus caldus ATCC
           51756]
          Length = 220

 Score =  234 bits (598), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 155/202 (76%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK NPI  RLG+   WNSRW+++G ++   L ED+++RE+++  L  A +++I+IER 
Sbjct: 1   MGQKTNPIGLRLGIIKNWNSRWYSKG-DFKDKLVEDIRVREFIRKRLGGAAISQIVIERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            ++ RI +++ARPG++IGKKG DIEK+R  +       +H++V E+ KPE++A L+A+S+
Sbjct: 60  ARSARITLHTARPGVVIGKKGEDIEKLRLDVQRQMGVPVHINVEEIRKPELDAQLVAESV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKRAV +AMRFGA G+++  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 120 AQQLERRIMFRRAMKRAVTNAMRFGAKGMRINCAGRLGGAEIARTEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A+T YG  G+KV++
Sbjct: 180 DIDYGFAEAKTTYGIIGVKVWI 201


>gi|197287074|ref|YP_002152946.1| 30S ribosomal protein S3 [Proteus mirabilis HI4320]
 gi|227354928|ref|ZP_03839342.1| 30S ribosomal protein S3 [Proteus mirabilis ATCC 29906]
 gi|194684561|emb|CAR46389.1| 30S ribosomal protein S3 [Proteus mirabilis HI4320]
 gi|227165010|gb|EEI49849.1| 30S ribosomal protein S3 [Proteus mirabilis ATCC 29906]
          Length = 233

 Score =  234 bits (598), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 112/219 (51%), Positives = 156/219 (71%), Gaps = 1/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A  +E+   L  D K+R+YL   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWYAGTNEFADNLDSDFKVRQYLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKNVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDY T+ A T YG  G+KV++  + E+    + +  AE
Sbjct: 181 DIDYNTSEAHTTYGVLGVKVWI-FKGEILGGMAAVEQAE 218


>gi|281602679|gb|ADA75663.1| 30S ribosomal protein S3 [Shigella flexneri 2002017]
          Length = 224

 Score =  234 bits (598), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   E+   L  D K+R+YL   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|146281176|ref|YP_001171329.1| 30S ribosomal protein S3 [Pseudomonas stutzeri A1501]
 gi|152060896|sp|A4VHN6|RS3_PSEU5 RecName: Full=30S ribosomal protein S3
 gi|145569381|gb|ABP78487.1| ribosomal protein S3 [Pseudomonas stutzeri A1501]
 gi|327479329|gb|AEA82639.1| 30S ribosomal protein S3 [Pseudomonas stutzeri DSM 4166]
          Length = 228

 Score =  234 bits (598), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 111/202 (54%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+     S W+A G  Y   L  DL +REYLQ  LK A V++I I R 
Sbjct: 1   MGQKVHPTGIRLGIVKEHTSVWYADGRTYADYLLADLNVREYLQDKLKSASVSRIDIHRP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI +++ARPG++IGKKG D+EK+R+ L+      +H+++ E+ KPE++A L+AQS+
Sbjct: 61  AQTARITIHTARPGIVIGKKGEDVEKLRQDLTKQMGVPVHINIEEIRKPELDAMLVAQSV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+AMR GA G+K+  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A T YG  G+KV++
Sbjct: 181 DIDYNTYEAHTTYGVIGVKVWI 202


>gi|317494336|ref|ZP_07952750.1| ribosomal protein S3 [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917586|gb|EFV38931.1| ribosomal protein S3 [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 233

 Score =  234 bits (598), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   E+   L  D K+R++L   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQFLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|253991682|ref|YP_003043038.1| 30S ribosomal protein S3 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253783132|emb|CAQ86297.1| 30S ribosomal protein S3 [Photorhabdus asymbiotica]
          Length = 233

 Score =  234 bits (598), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 111/219 (50%), Positives = 155/219 (70%), Gaps = 1/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A   E+   L  D K+R+YL   L +A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWYANTKEFADNLDSDFKVRQYLNKELAKASISRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++ +      ++++EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKTVAEIAGVPAQINISEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDY T+ A T YG  G+KV++  + E+    + +  AE
Sbjct: 181 DIDYNTSEAHTTYGVLGVKVWI-FKGEILGGMAAVEQAE 218


>gi|152972221|ref|YP_001337367.1| 30S ribosomal protein S3 [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|188535272|ref|YP_001909069.1| 30S ribosomal protein S3 [Erwinia tasmaniensis Et1/99]
 gi|206580744|ref|YP_002236287.1| ribosomal protein S3 [Klebsiella pneumoniae 342]
 gi|238896810|ref|YP_002921555.1| 30S ribosomal protein S3 [Klebsiella pneumoniae NTUH-K2044]
 gi|259909993|ref|YP_002650349.1| 30S ribosomal protein S3 [Erwinia pyrifoliae Ep1/96]
 gi|262045171|ref|ZP_06018198.1| 30S ribosomal protein S3 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|288933272|ref|YP_003437331.1| ribosomal protein S3 [Klebsiella variicola At-22]
 gi|290512075|ref|ZP_06551443.1| 30S ribosomal protein S3 [Klebsiella sp. 1_1_55]
 gi|292489843|ref|YP_003532733.1| 30S ribosomal protein S3 [Erwinia amylovora CFBP1430]
 gi|292900885|ref|YP_003540254.1| 30S ribosomal protein S3 [Erwinia amylovora ATCC 49946]
 gi|330002288|ref|ZP_08304282.1| ribosomal protein S3 [Klebsiella sp. MS 92-3]
 gi|189045015|sp|A6TEW6|RS3_KLEP7 RecName: Full=30S ribosomal protein S3
 gi|226697710|sp|B2VK58|RS3_ERWT9 RecName: Full=30S ribosomal protein S3
 gi|226697722|sp|B5XNA0|RS3_KLEP3 RecName: Full=30S ribosomal protein S3
 gi|150957070|gb|ABR79100.1| 30S ribosomal protein S3 [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|188030314|emb|CAO98203.1| 30S ribosomal protein S3 [Erwinia tasmaniensis Et1/99]
 gi|206569802|gb|ACI11578.1| ribosomal protein S3 [Klebsiella pneumoniae 342]
 gi|224965615|emb|CAX57147.1| 30S ribosomal protein S3 [Erwinia pyrifoliae Ep1/96]
 gi|238549137|dbj|BAH65488.1| 30S ribosomal protein S3 [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
 gi|259037491|gb|EEW38735.1| 30S ribosomal protein S3 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|283480090|emb|CAY76006.1| 30S ribosomal protein S3 [Erwinia pyrifoliae DSM 12163]
 gi|288888001|gb|ADC56319.1| ribosomal protein S3 [Klebsiella variicola At-22]
 gi|289775865|gb|EFD83865.1| 30S ribosomal protein S3 [Klebsiella sp. 1_1_55]
 gi|291200733|emb|CBJ47866.1| 30S ribosomal protein S3 [Erwinia amylovora ATCC 49946]
 gi|291555280|emb|CBA23577.1| 30S ribosomal protein S3 [Erwinia amylovora CFBP1430]
 gi|310765592|gb|ADP10542.1| 30S ribosomal protein S3 [Erwinia sp. Ejp617]
 gi|312174025|emb|CBX82278.1| 30S ribosomal protein S3 [Erwinia amylovora ATCC BAA-2158]
 gi|328537361|gb|EGF63611.1| ribosomal protein S3 [Klebsiella sp. MS 92-3]
          Length = 232

 Score =  234 bits (597), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   E+   L  D K+R++L   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQFLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|206602681|gb|EDZ39162.1| Ribosomal protein S3 [Leptospirillum sp. Group II '5-way CG']
          Length = 226

 Score =  234 bits (597), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 114/204 (55%), Positives = 155/204 (75%), Gaps = 3/204 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI FRLG   TW+SRW+A+   +  LLHEDLKIR+ ++  L  AG+AKI IERT
Sbjct: 1   MGQKVHPIGFRLGYIKTWSSRWYAQKG-FADLLHEDLKIRKMVKKKLFHAGIAKIEIERT 59

Query: 61  HKNC--RIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQ 118
            K+   RI +++ARPGLIIGKKG +IEK++ +L   T S + +++ E+ KPE+ A LIA+
Sbjct: 60  GKDALARISIHTARPGLIIGKKGLEIEKLKSELEETTKSHVSINIKEIKKPELEAQLIAE 119

Query: 119 SIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTL 178
           S+A QLE+R+ +RRAMK++V SA+RFGA GVK+  +GRL G+E++RTE Y EGRVPL TL
Sbjct: 120 SVASQLEKRISYRRAMKKSVSSALRFGALGVKICCAGRLGGSEIARTEWYREGRVPLHTL 179

Query: 179 RAHIDYGTAVAETAYGSCGIKVYV 202
           RA ID+G A A T +G  G+KV+V
Sbjct: 180 RADIDFGFAEASTTFGKIGVKVWV 203


>gi|50122945|ref|YP_052112.1| 30S ribosomal protein S3 [Pectobacterium atrosepticum SCRI1043]
 gi|61215521|sp|Q6CZX6|RS3_ERWCT RecName: Full=30S ribosomal protein S3
 gi|49613471|emb|CAG76922.1| 30S ribosomal subunit protein S3 [Pectobacterium atrosepticum
           SCRI1043]
          Length = 233

 Score =  234 bits (597), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 149/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A   E+   L  D K+R+YL   L++A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWYANTKEFADNLDSDFKVRKYLTKELEKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|268593547|ref|ZP_06127768.1| ribosomal protein S3 [Providencia rettgeri DSM 1131]
 gi|291310825|gb|EFE51278.1| ribosomal protein S3 [Providencia rettgeri DSM 1131]
          Length = 233

 Score =  234 bits (597), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 111/219 (50%), Positives = 157/219 (71%), Gaps = 1/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A  +E+   L  D K+R+YL   L +A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWYANTNEFADNLDSDYKVRQYLNKELAKASISRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKTVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           + QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 SSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDY T+ A T YG  G+KV++  + E+    + +  AE
Sbjct: 181 DIDYNTSEAHTTYGVLGVKVWI-FKGEILGGMAAVEQAE 218


>gi|227115266|ref|ZP_03828922.1| 30S ribosomal protein S3 [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227328943|ref|ZP_03832967.1| 30S ribosomal protein S3 [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
 gi|253690177|ref|YP_003019367.1| ribosomal protein S3 [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|261823226|ref|YP_003261332.1| 30S ribosomal protein S3 [Pectobacterium wasabiae WPP163]
 gi|259495254|sp|C6DG68|RS3_PECCP RecName: Full=30S ribosomal protein S3
 gi|251756755|gb|ACT14831.1| ribosomal protein S3 [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|261607239|gb|ACX89725.1| ribosomal protein S3 [Pectobacterium wasabiae WPP163]
          Length = 233

 Score =  234 bits (597), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 149/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A   E+   L  D K+R+YL   L++A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWYANTKEFADNLDSDFKVRKYLTKELEKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|317050534|ref|YP_004111650.1| 30S ribosomal protein S3 [Desulfurispirillum indicum S5]
 gi|316945618|gb|ADU65094.1| ribosomal protein S3 [Desulfurispirillum indicum S5]
          Length = 230

 Score =  234 bits (597), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 108/203 (53%), Positives = 151/203 (74%), Gaps = 1/203 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+  TWNS+W+A   +Y   LHEDL+I ++L+  L  AG++++ IER 
Sbjct: 1   MGQKVHPTGLRLGIIKTWNSKWYA-NKDYADFLHEDLRIEKHLRKELYHAGISRVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++ARPG++IGKKG +IEK+RK LS+MT   I ++V EV KPE++A L+A+++
Sbjct: 60  PGKVNITLHTARPGIVIGKKGAEIEKVRKSLSDMTKKNIFVNVKEVKKPELDAQLVAENV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK+AV   M+ G +G+++  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 120 AMQLERRVAFRRAMKKAVGMTMKMGGEGIRIACAGRLGGAEIARTEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVS 203
            IDYG A A+T YG  G+KV++S
Sbjct: 180 DIDYGFAEAKTTYGIIGVKVWMS 202


>gi|145300929|ref|YP_001143770.1| ribosomal protein S3 [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|152060842|sp|A4ST00|RS3_AERS4 RecName: Full=30S ribosomal protein S3
 gi|142853701|gb|ABO92022.1| ribosomal protein S3 [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 236

 Score =  234 bits (597), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   ++   L+ D ++R++L   LK A ++KI IER 
Sbjct: 1   MGQKVHPNGIRLGITKPWNSTWFANTKDFADNLYSDFQVRQFLTKELKNASLSKITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++ +T     ++++EV KPE++  L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRKAVAVITGVPAQINISEVRKPELDGKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYATSEAHTTYGVIGVKVWI 202


>gi|124514437|gb|EAY55950.1| ribosomal protein S3 [Leptospirillum rubarum]
          Length = 226

 Score =  234 bits (597), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 114/204 (55%), Positives = 155/204 (75%), Gaps = 3/204 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI FRLG   TW+SRW+A+   +  LLHEDLKIR+ ++  L  AG+AKI IERT
Sbjct: 1   MGQKVHPIGFRLGYIKTWSSRWYAQKG-FADLLHEDLKIRKMVKKKLFHAGIAKIEIERT 59

Query: 61  HKNC--RIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQ 118
            K+   RI +++ARPGLIIGKKG +IEK++ +L   T S + +++ E+ KPE+ A LIA+
Sbjct: 60  GKDALARISIHTARPGLIIGKKGLEIEKLKSELEETTKSHVSINIKEIKKPELEAQLIAE 119

Query: 119 SIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTL 178
           S+A QLE+R+ +RRAMK++V SA+RFGA GVK+  +GRL G+E++RTE Y EGRVPL TL
Sbjct: 120 SVASQLEKRISYRRAMKKSVSSALRFGALGVKICCAGRLGGSEIARTEWYREGRVPLHTL 179

Query: 179 RAHIDYGTAVAETAYGSCGIKVYV 202
           RA ID+G A A T +G  G+KV+V
Sbjct: 180 RADIDFGFAEASTTFGKIGVKVWV 203


>gi|322378773|ref|ZP_08053202.1| 30S ribosomal protein S3 [Helicobacter suis HS1]
 gi|321148803|gb|EFX43274.1| 30S ribosomal protein S3 [Helicobacter suis HS1]
          Length = 230

 Score =  234 bits (597), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 111/202 (54%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF       A + ED +IR++L+  L  AGV++ILIER 
Sbjct: 1   MGQKVNPIGLRLGINRNWTSRWFPSSGVAVANIEEDYRIRKFLKKELYYAGVSEILIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPGLIIGKKG DIEK++  L ++   E+ L++ EV +P+ +A L A+++
Sbjct: 61  AKKLRVTVVAARPGLIIGKKGVDIEKVKTSLKDLIRKEVALNIKEVKRPQADAQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q+AM+ GA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 ATQLEKRVAFRRAMKKVMQTAMKAGARGIKVRVSGRLAGAEIARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG+ G+KV++
Sbjct: 181 KIDYGFAEAFTVYGNIGVKVWL 202


>gi|302877807|ref|YP_003846371.1| 30S ribosomal protein S3 [Gallionella capsiferriformans ES-2]
 gi|302580596|gb|ADL54607.1| ribosomal protein S3 [Gallionella capsiferriformans ES-2]
          Length = 235

 Score =  234 bits (596), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 109/203 (53%), Positives = 153/203 (75%), Gaps = 1/203 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P  FRL V   W+S+WFA  + +  +L +D+++R YL+  L  A V+KI+IER 
Sbjct: 1   MGQKIHPTGFRLSVRKNWDSKWFANSANFADMLLKDIEVRAYLKKKLASAMVSKIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSN-MTNSEIHLSVNEVPKPEINATLIAQS 119
            K+ ++ +Y+ARPG++IGKKG DIE +R +L   M    + L++ EV KPEI+A LIA +
Sbjct: 61  AKSAKVTIYTARPGMVIGKKGEDIEVLRAELRRRMGLQSVDLAIEEVRKPEIDAQLIADN 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           I  QLE+R++FRRAMKR++Q+AMR GA G+K++++GRLNG E++RTE Y EGRVPL TLR
Sbjct: 121 ITAQLEKRIMFRRAMKRSMQNAMRLGALGIKIMSAGRLNGIEIARTEWYREGRVPLHTLR 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYV 202
           A IDYGT+ A+T YG  G+KV+V
Sbjct: 181 ADIDYGTSEAQTTYGIIGVKVWV 203


>gi|15837760|ref|NP_298448.1| 30S ribosomal protein S3 [Xylella fastidiosa 9a5c]
 gi|27734539|sp|Q9PE70|RS3_XYLFA RecName: Full=30S ribosomal protein S3
 gi|9106122|gb|AAF83968.1|AE003950_18 30S ribosomal protein S3 [Xylella fastidiosa 9a5c]
          Length = 239

 Score =  234 bits (596), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 110/211 (52%), Positives = 156/211 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K++PI  RLG++  WNS+W+A  +E+   L  DLK+R+ L+  + QAG++KILIER 
Sbjct: 1   MGHKVHPIGIRLGISADWNSKWYANKAEFAGYLAADLKVRQVLRKKMSQAGISKILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + ++ ARPG++IGK+G DIE +RK++S++    +H++V EV KPE++A L+A+S+
Sbjct: 61  SNTACVSMHVARPGVVIGKRGEDIEMLRKQVSDIMGVSVHINVIEVRKPELDAQLVAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKR+V +AMR GA G+K+  +GRLNGAE++R+E Y EGRVPLQTLRA
Sbjct: 121 AQQLERRIMFRRAMKRSVGNAMRLGALGIKISVAGRLNGAEIARSEWYREGRVPLQTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDS 211
            I YG + A T YG  G+KV +   D  S S
Sbjct: 181 DIGYGFSEAHTNYGVTGVKVLIYHGDIFSFS 211


>gi|212634835|ref|YP_002311360.1| 30S ribosomal protein S3 [Shewanella piezotolerans WP3]
 gi|212556319|gb|ACJ28773.1| Ribosomal protein S3 [Shewanella piezotolerans WP3]
          Length = 229

 Score =  234 bits (596), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 111/210 (52%), Positives = 154/210 (73%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W S W+A  S+Y   L  D ++R++L+  LKQA V+KI+IER 
Sbjct: 1   MGQKVHPNGIRLGITKPWISTWYADKSDYANNLSSDWEVRKFLEKKLKQASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +T +   +++ E+ KPE++A L+A  I
Sbjct: 61  AKSVRVTIHTARPGVVIGKKGEDVEKLRNAVAKLTGTPAQINIAEIRKPELDAKLVADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            IDY T+ + T YG  G+KV+V  + EV D
Sbjct: 181 DIDYSTSESHTQYGVIGVKVWV-FKGEVLD 209


>gi|317049834|ref|YP_004117482.1| 30S ribosomal protein S3 [Pantoea sp. At-9b]
 gi|316951451|gb|ADU70926.1| ribosomal protein S3 [Pantoea sp. At-9b]
          Length = 232

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   E+   L  D K+R++L   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQFLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++N+      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRTVVANIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|212704589|ref|ZP_03312717.1| hypothetical protein DESPIG_02651 [Desulfovibrio piger ATCC 29098]
 gi|212671988|gb|EEB32471.1| hypothetical protein DESPIG_02651 [Desulfovibrio piger ATCC 29098]
          Length = 213

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 115/212 (54%), Positives = 150/212 (70%), Gaps = 2/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG N  W SRWF++  +Y A + ED KIR Y++  L  AG+AKI IER 
Sbjct: 1   MGQKVHPFGFRLGYNKNWQSRWFSK-KDYPAFVFEDSKIRAYVKKLLYHAGLAKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+I+ +ARPG++IG+KG +IEK+R  L      E  L VNE+ +PE+ A L+A++I
Sbjct: 60  GGKIRLILSTARPGIVIGRKGVEIEKLRGDLRQKFGREFSLEVNEIRRPEVEAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKR V  A +FG +G+KV  SGRL GAE++RTE Y +GRVPLQTLRA
Sbjct: 120 AQQLERRVAFRRAMKRTVSMARKFGGEGIKVTCSGRLAGAEIARTEWYRDGRVPLQTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYG A A T YG  G+KV++  + E+ D +
Sbjct: 180 DIDYGFAEAHTTYGIIGVKVWI-YKGEILDKE 210


>gi|330827889|ref|YP_004390841.1| 30S ribosomal protein S3 [Aeromonas veronii B565]
 gi|328803025|gb|AEB48224.1| 30S ribosomal protein S3 [Aeromonas veronii B565]
          Length = 237

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   ++   L+ D ++R++L   LK A ++KI IER 
Sbjct: 1   MGQKVHPNGIRLGITKPWNSTWFANTKDFADNLYSDFQVRQFLTKELKNASLSKITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++ +      ++++EV KPE++  L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRKAVATIAGVPAQINISEVRKPELDGKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYATSEAHTTYGVIGVKVWI 202


>gi|71276489|ref|ZP_00652764.1| ribosomal protein S3 [Xylella fastidiosa Dixon]
 gi|71900600|ref|ZP_00682727.1| ribosomal protein S3 [Xylella fastidiosa Ann-1]
 gi|170729706|ref|YP_001775139.1| 30S ribosomal protein S3 [Xylella fastidiosa M12]
 gi|226697778|sp|B0U5K5|RS3_XYLFM RecName: Full=30S ribosomal protein S3
 gi|71162666|gb|EAO12393.1| ribosomal protein S3 [Xylella fastidiosa Dixon]
 gi|71729657|gb|EAO31761.1| ribosomal protein S3 [Xylella fastidiosa Ann-1]
 gi|167964499|gb|ACA11509.1| 30S ribosomal protein S3 [Xylella fastidiosa M12]
          Length = 239

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 110/211 (52%), Positives = 156/211 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K++PI  RLG++  WNS+W+A  +E+   L  DLK+R+ L+  + QAG++KILIER 
Sbjct: 1   MGHKVHPIGIRLGISADWNSKWYANKAEFAGYLAADLKVRQVLRKKMSQAGISKILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + ++ ARPG++IGK+G DIE +RK+LS++    +H++V EV KPE++A L+A+S+
Sbjct: 61  SNAACVSMHVARPGVVIGKRGEDIEMLRKQLSDIMGVSVHINVIEVRKPELDAQLVAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKR+V +A+R GA G+K+  +GRLNGAE++R+E Y EGRVPLQTLRA
Sbjct: 121 AQQLERRIMFRRAMKRSVSNAIRLGALGIKISVAGRLNGAEIARSEWYREGRVPLQTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDS 211
            I YG + A T YG  G+KV +   D  S S
Sbjct: 181 DIGYGFSEAHTNYGVTGVKVLIYHGDIFSFS 211


>gi|83591270|ref|YP_431279.1| 30S ribosomal protein S3 [Moorella thermoacetica ATCC 39073]
 gi|123766691|sp|Q2RFQ3|RS3_MOOTA RecName: Full=30S ribosomal protein S3
 gi|83574184|gb|ABC20736.1| SSU ribosomal protein S3P [Moorella thermoacetica ATCC 39073]
          Length = 219

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 150/202 (74%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W+SRW+A G EY  LLHEDLKIRE+++  L QAG+A + IER 
Sbjct: 1   MGQKVHPKGLRLGIIRDWDSRWYA-GKEYKTLLHEDLKIREFIKKRLYQAGIASVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++IV +A+PG++IG+ G ++E +RK L  +T  +++L++ E+ KPE+NA L+A+++
Sbjct: 60  ANRIKVIVNTAKPGIVIGRGGAEVEALRKDLERLTGKQVNLNIAEIKKPELNAQLVAENV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+R+ FRRAMK+AV  AMR GA G+K+   GRL GAE++RTE Y EG+VPL TLRA
Sbjct: 120 AAQLEKRIAFRRAMKQAVGRAMRLGAQGIKIACGGRLAGAEIARTEWYSEGKVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 180 DIDYGFAEANTTYGKIGVKVWI 201


>gi|15599453|ref|NP_252947.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa PAO1]
 gi|107103770|ref|ZP_01367688.1| hypothetical protein PaerPA_01004841 [Pseudomonas aeruginosa PACS2]
 gi|116052292|ref|YP_788862.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152987607|ref|YP_001346229.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa PA7]
 gi|218889415|ref|YP_002438279.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa LESB58]
 gi|296387186|ref|ZP_06876685.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa PAb1]
 gi|313111411|ref|ZP_07797216.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa 39016]
 gi|27734535|sp|Q9HWE1|RS3_PSEAE RecName: Full=30S ribosomal protein S3
 gi|122261441|sp|Q02T74|RS3_PSEAB RecName: Full=30S ribosomal protein S3
 gi|171460872|sp|A6UZJ4|RS3_PSEA7 RecName: Full=30S ribosomal protein S3
 gi|9950474|gb|AAG07645.1|AE004841_23 30S ribosomal protein S3 [Pseudomonas aeruginosa PAO1]
 gi|115587513|gb|ABJ13528.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa UCBPP-PA14]
 gi|150962765|gb|ABR84790.1| ribosomal protein S3 [Pseudomonas aeruginosa PA7]
 gi|218769638|emb|CAW25398.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa LESB58]
 gi|310883718|gb|EFQ42312.1| 30S ribosomal protein S3 [Pseudomonas aeruginosa 39016]
          Length = 228

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 111/202 (54%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+     S W+A    Y   L  DLK+REYLQ  LK A V++I I R 
Sbjct: 1   MGQKVHPNGIRLGIVKEHTSVWYADRKNYADYLFADLKVREYLQDKLKSASVSRIDIHRP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI +++ARPG++IGKKG D+EK+R+ L+      +H+++ E+ KPE++A L+AQS+
Sbjct: 61  AQTARITIHTARPGIVIGKKGEDVEKLRQDLTKQMGVPVHINIEEIRKPELDAMLVAQSV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+AMR GA G+K+  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A T YG  G+KV++
Sbjct: 181 DIDYATYEAHTTYGVIGVKVWI 202


>gi|91791545|ref|YP_561196.1| 30S ribosomal protein S3 [Shewanella denitrificans OS217]
 gi|123166585|sp|Q12SV3|RS3_SHEDO RecName: Full=30S ribosomal protein S3
 gi|91713547|gb|ABE53473.1| SSU ribosomal protein S3P [Shewanella denitrificans OS217]
          Length = 229

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 111/210 (52%), Positives = 155/210 (73%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W S W+A  S+Y   L+ D ++R+YL   LK A V+KI+IER 
Sbjct: 1   MGQKVHPNGIRLGITKPWISTWYADKSDYANNLNSDWEVRQYLTEKLKAASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+E +R +++ +T +   +++ E+ KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEVLRAQVAKITGTTAQINIAEIRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRIGAQGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            IDY T+ + T YG  G+KV++  + EV D
Sbjct: 181 DIDYSTSESHTQYGVIGVKVWI-FKGEVLD 209


>gi|290477186|ref|YP_003470101.1| 30S ribosomal subunit protein S3 [Xenorhabdus bovienii SS-2004]
 gi|289176534|emb|CBJ83343.1| 30S ribosomal subunit protein S3 [Xenorhabdus bovienii SS-2004]
          Length = 233

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 111/219 (50%), Positives = 155/219 (70%), Gaps = 1/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A   E+   L  D K+R+YL   L +A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWYANTKEFADNLDSDFKVRQYLNKELVKASISRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++ +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKTVAEIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           + QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 SSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDY T+ A T YG  G+KV++  + E+    + +  AE
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI-FKGEILGGMAAVEQAE 218


>gi|291277262|ref|YP_003517034.1| 30S ribosomal protein S3 [Helicobacter mustelae 12198]
 gi|290964456|emb|CBG40306.1| 30S ribosomal protein S3 [Helicobacter mustelae 12198]
          Length = 233

 Score =  233 bits (595), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 113/208 (54%), Positives = 149/208 (71%), Gaps = 1/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF       A + ED KIR++L+  L  AG+++I+IER 
Sbjct: 1   MGQKVNPIGLRLGINRNWTSRWFPSTQSTPANIAEDYKIRKFLKKELYYAGISEIIIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPGLIIGKKG DIE+++  L  + + E  +++ EV +P+ NA L A+++
Sbjct: 61  AKKIRVTVVAARPGLIIGKKGADIERVKDSLKAIIHKEATINIKEVKRPQANAQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +QSAM+ GA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 AIQLEKRVAFRRAMKKVMQSAMKSGAKGIKVKVSGRLAGAEMARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDYG A A T YG  G+KV++  R EV
Sbjct: 181 KIDYGFAEAMTTYGIIGVKVWI-FRGEV 207


>gi|254785085|ref|YP_003072513.1| 30S ribosomal protein S3 [Teredinibacter turnerae T7901]
 gi|237684180|gb|ACR11444.1| ribosomal protein S3 [Teredinibacter turnerae T7901]
          Length = 224

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+     S W+A   +Y   L+EDLK+R Y+Q  L  A V+++ IER 
Sbjct: 1   MGQKVHPTGIRLGIVKKHTSTWYASKGDYADKLNEDLKVRAYIQKVLSHASVSRVDIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+ +++ARPG++IGKKG D+EK+R ++S      +H+++ E+ KP+++  L+AQS+
Sbjct: 61  ANTARVTIHTARPGIVIGKKGEDVEKLRAEISKQMGVPVHINIEEIRKPDLDGVLVAQSV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+AMR GA+GVK+  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRQGAEGVKIQVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A T YG  G+KV++
Sbjct: 181 DIDYATAEASTTYGIIGVKVWI 202


>gi|89095531|ref|ZP_01168436.1| 30S ribosomal protein S3 [Oceanospirillum sp. MED92]
 gi|89080206|gb|EAR59473.1| 30S ribosomal protein S3 [Oceanospirillum sp. MED92]
          Length = 226

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+     S W+A  SEY + L  DL++REYL   L++A V++I IER 
Sbjct: 1   MGQKVHPTGIRLGIVKDHTSVWYADKSEYASKLQNDLQVREYLDKQLEKASVSRIEIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N +I +++ARPG++IGKKG D+EK+R  +S M    +H+++ E+ KPE++A L+AQ +
Sbjct: 61  AQNAKITIHTARPGIVIGKKGEDVEKLRNTVSEMMGVPVHINIEEIRKPELDARLVAQGV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+K+   GRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKIQLGGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A T YG  G+KV++
Sbjct: 181 DIDYATYEAHTTYGVIGVKVWI 202


>gi|254442541|ref|ZP_05056017.1| ribosomal protein S3 [Verrucomicrobiae bacterium DG1235]
 gi|198256849|gb|EDY81157.1| ribosomal protein S3 [Verrucomicrobiae bacterium DG1235]
          Length = 207

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 112/202 (55%), Positives = 145/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK +PI FRL VN  W SRWFAR +E+ + L+ED  IRE L   LK A V +I IER 
Sbjct: 1   MGQKTHPIGFRLAVNRNWQSRWFARKNEFASTLYEDHIIREKLMEKLKFASVPRIFIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+ +++ARPG++IG+KG +IEKI+ +LS  T  EI L + EV KPE++ATL+A+++
Sbjct: 61  SSRVRVKIFTARPGIVIGRKGQEIEKIKDELSKATGKEILLDIQEVKKPELDATLVAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK+AVQ AM  GA+G+K+   GRL GA+++RTE   +G VPL TLR 
Sbjct: 121 ALQLERRIAFRRAMKKAVQMAMSLGANGIKIQVGGRLGGADIARTEVQRQGSVPLHTLRE 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYGTA A T YG  GIK +V
Sbjct: 181 EIDYGTAEARTVYGIIGIKCWV 202


>gi|289209323|ref|YP_003461389.1| ribosomal protein S3 [Thioalkalivibrio sp. K90mix]
 gi|288944954|gb|ADC72653.1| ribosomal protein S3 [Thioalkalivibrio sp. K90mix]
          Length = 226

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 115/217 (52%), Positives = 155/217 (71%), Gaps = 4/217 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG++  W++ W+A G E+G  L+ D+K+RE+LQ  L  A V++I I R 
Sbjct: 1   MGQKVHPTGIRLGISRPWSATWYADGREFGETLNNDIKLREFLQKKLAHASVSRISISRP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSE---IHLSVNEVPKPEINATLIA 117
            K   I + +ARPG++IGKKG DIEK+R+ ++  T  E   + +++ EV KPEI A L+A
Sbjct: 61  AKAAHITIQTARPGIVIGKKGEDIEKLRQDVARETGLEKGTVKINIEEVRKPEIEAQLVA 120

Query: 118 QSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQT 177
           + IAQQLERR++FRRAMKRAV +AMR GA G+KV  SGRLNGAE++R+E Y EGRVPL T
Sbjct: 121 EGIAQQLERRIMFRRAMKRAVGNAMRLGAQGIKVHVSGRLNGAEIARSEWYREGRVPLHT 180

Query: 178 LRAHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDST 214
           LRA IDYG A A T YG  G+KV++  + EV   + T
Sbjct: 181 LRADIDYGFAEARTTYGIIGVKVWI-FKGEVFGLEPT 216


>gi|157372770|ref|YP_001480759.1| 30S ribosomal protein S3 [Serratia proteamaculans 568]
 gi|172047789|sp|A8GKJ1|RS3_SERP5 RecName: Full=30S ribosomal protein S3
 gi|157324534|gb|ABV43631.1| ribosomal protein S3 [Serratia proteamaculans 568]
          Length = 232

 Score =  233 bits (594), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A   E+   L  D K+R++L   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWYANTKEFADNLDSDFKVRQFLIKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++N+      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVANIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|85713141|ref|ZP_01044173.1| Ribosomal protein S3 [Idiomarina baltica OS145]
 gi|85693011|gb|EAQ30977.1| Ribosomal protein S3 [Idiomarina baltica OS145]
          Length = 226

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/208 (51%), Positives = 157/208 (75%), Gaps = 1/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG++  WN+ W+A  +E+   LH D ++R++L   L+ A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGISRPWNATWYANTNEFADNLHSDHQVRKFLTKELRNASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R+++  +T +   ++++EV KPE++A L+A +I
Sbjct: 61  AKSVRVTIHTARPGVVIGKKGEDVEKLRQQVQKLTGAPSQINISEVRKPELDAQLVADNI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           + QLERRV+FRRAMKRAVQ+A+R GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 SGQLERRVMFRRAMKRAVQNAIRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T+ A T YG  G+KV++  R EV
Sbjct: 181 DIDYATSEANTTYGIIGVKVWI-FRGEV 207


>gi|157377443|ref|YP_001476043.1| 30S ribosomal protein S3 [Shewanella sediminis HAW-EB3]
 gi|157319817|gb|ABV38915.1| ribosomal protein S3 [Shewanella sediminis HAW-EB3]
          Length = 229

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 114/219 (52%), Positives = 156/219 (71%), Gaps = 3/219 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W S W+A  S+Y   L  D ++R++L+  LKQA V+KI+IER 
Sbjct: 1   MGQKVHPNGIRLGITKPWISTWYADKSDYANNLTSDSEVRKFLEKKLKQASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +T     +++ E+ KPE++A L+A  I
Sbjct: 61  AKSVRVTIHTARPGVVIGKKGEDVEKLRNAVAKLTGIPAQINIAEIRKPELDAKLVADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV   GRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVQVGGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDY TA + T YG  G+KV+V  + EV   D  +PA E
Sbjct: 181 DIDYSTAESHTQYGVIGVKVWV-FKGEV--LDGVVPAHE 216


>gi|33152952|ref|NP_874305.1| 30S ribosomal protein S3 [Haemophilus ducreyi 35000HP]
 gi|61215714|sp|Q7VKD7|RS3_HAEDU RecName: Full=30S ribosomal protein S3
 gi|33149177|gb|AAP96694.1| 30S ribosomal protein S3 [Haemophilus ducreyi 35000HP]
          Length = 234

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   ++   L  D K+R++L   L  A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTQDFADNLDGDFKVRKFLNKELANASVSRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  +S +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVSQIAGVPAQINIAEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A T YG  G+KV++
Sbjct: 181 DIDYNTAEAHTTYGVIGVKVWI 202


>gi|302036671|ref|YP_003796993.1| 30S ribosomal protein S3 [Candidatus Nitrospira defluvii]
 gi|300604735|emb|CBK41067.1| 30S ribosomal protein S3 [Candidatus Nitrospira defluvii]
          Length = 222

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 153/202 (75%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK +PI +R+G N TW+SRW+A   +Y  LLH+D+KIR+ ++  L  AGVAK+ IER+
Sbjct: 1   MGQKTHPIGYRIGYNYTWSSRWYA-DKDYARLLHQDIKIRKMVKAKLYHAGVAKVEIERS 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+I+++ARPG+IIG+KG +++K++  L    + + +++V E+ KPE++A L+++++
Sbjct: 60  GDQTRVIIHTARPGIIIGRKGAEVDKLKAALEKEYSGQAYITVKEIKKPELDAQLVSENV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMKR+VQSA+R GA G+K++ +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 120 ATQLEKRVAFRRAMKRSVQSALRLGAQGIKIMVAGRLGGAEIARTEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            +DYG A A T  G  G+K ++
Sbjct: 180 EVDYGFAEAHTTMGQIGVKTWI 201


>gi|238921436|ref|YP_002934951.1| 30S ribosomal protein S3 [Edwardsiella ictaluri 93-146]
 gi|294638046|ref|ZP_06716306.1| ribosomal protein S3 [Edwardsiella tarda ATCC 23685]
 gi|259495245|sp|C5BGL9|RS3_EDWI9 RecName: Full=30S ribosomal protein S3
 gi|238871005|gb|ACR70716.1| 30S ribosomal protein S3, putative [Edwardsiella ictaluri 93-146]
 gi|291088838|gb|EFE21399.1| ribosomal protein S3 [Edwardsiella tarda ATCC 23685]
          Length = 233

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A   E+   L  D K+R++L   L++A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWYANTKEFADNLDSDFKVRQFLNKELEKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++ +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKGVAEIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|33357880|pdb|1P6G|C Chain C, Real Space Refined Coordinates Of The 30s Subunit Fitted
           Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp
           State Of E. Coli 70s Ribosome
 gi|33357957|pdb|1P87|C Chain C, Real Space Refined Coordinates Of The 30s Subunit Fitted
           Into The Low Resolution Cryo-Em Map Of The
           Initiation-Like State Of E. Coli 70s Ribosome
 gi|83754041|pdb|2AVY|C Chain C, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli At 3.5 A Resolution. This File Contains
           The 30s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes And Is Described In
           Remark 400.
 gi|83754097|pdb|2AW7|C Chain C, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli At 3.5 A Resolution. This File Contains
           The 30s Subunit Of The Second 70s Ribosome. The Entire
           Crystal Structure Contains Two 70s Ribosomes And Is
           Described In Remark 400.
 gi|118138055|pdb|2I2P|C Chain C, Crystal Structure Of Ribosome With Messenger Rna And The
           Anticodon Stem-Loop Of P-Site Trna. This File Contains
           The 30s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes And Is Described In
           Remark 400.
 gi|118138126|pdb|2I2U|C Chain C, Crystal Structure Of Ribosome With Messenger Rna And The
           Anticodon Stem-Loop Of P-Site Trna. This File Contains
           The 30s Subunit Of One 70s Ribosome. The Entire Crystal
           Structure Contains Two 70s Ribosomes And Is Described In
           Remark 400.
 gi|157836025|pdb|2QOU|C Chain C, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Spectinomycin. This
           File Contains The 30s Subunit Of The First 70s Ribosome,
           With Spectinomycin Bound. The Entire Crystal Structure
           Contains Two 70s Ribosomes.
 gi|157836088|pdb|2QOW|C Chain C, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Spectinomycin. This
           File Contains The 30s Subunit Of The Second 70s
           Ribosome, With Spectinomycin Bound. The Entire Crystal
           Structure Contains Two 70s Ribosomes.
 gi|157836129|pdb|2QOY|C Chain C, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Spectinomycin And
           Neomycin. This File Contains The 30s Subunit Of The
           First 70s Ribosome, With Spectinomycin And Neomycin
           Bound. The Entire Crystal Structure Contains Two 70s
           Ribosomes.
 gi|157836192|pdb|2QP0|C Chain C, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Spectinomycin And
           Neomycin. This File Contains The 30s Subunit Of The
           Second 70s Ribosome, With Spectinomycin And Neomycin
           Bound. The Entire Crystal Structure Contains Two 70s
           Ribosomes.
 gi|158429700|pdb|2QAL|C Chain C, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Neomycin. This File
           Contains The 30s Subunit Of The First 70s Ribosome, With
           Neomycin Bound. The Entire Crystal Structure Contains
           Two 70s Ribosomes And Is Described In Remark 400.
 gi|158429752|pdb|2QAN|C Chain C, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Neomycin. This File
           Contains The 30s Subunit Of The Second 70s Ribosome,
           With Neomycin Bound. The Entire Crystal Structure
           Contains Two 70s Ribosomes And Is Described In Remark
           400.
 gi|158429810|pdb|2QB9|C Chain C, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Gentamicin. This File
           Contains The 30s Subunit Of The First 70s Ribosome, With
           Gentamicin Bound. The Entire Crystal Structure Contains
           Two 70s Ribosomes And Is Described In Remark 400.
 gi|158429862|pdb|2QBB|C Chain C, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Gentamicin. This File
           Contains The 30s Subunit Of The Second 70s Ribosome,
           With Gentamicin Bound. The Entire Crystal Structure
           Contains Two 70s Ribosomes And Is Described In Remark
           400.
 gi|158429914|pdb|2QBD|C Chain C, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Ribosome Recycling
           Factor (Rrf). This File Contains The 30s Subunit Of The
           First 70s Ribosome. The Entire Crystal Structure
           Contains Two 70s Ribosomes And Is Described In Remark
           400.
 gi|158429966|pdb|2QBF|C Chain C, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Ribosome Recycling
           Factor (Rrf). This File Contains The 30s Subunit Of The
           Second 70s Ribosome. The Entire Crystal Structure
           Contains Two 70s Ribosomes And Is Described In Remark
           400.
 gi|158430020|pdb|2QBH|C Chain C, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Gentamicin And Ribosome
           Recycling Factor (Rrf). This File Contains The 30s
           Subunit Of The First 70s Ribosome, With Gentamicin
           Bound. The Entire Crystal Structure Contains Two 70s
           Ribosomes And Is Described In Remark 400.
 gi|158430073|pdb|2QBJ|C Chain C, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Gentamicin And Ribosome
           Recycling Factor (Rrf). This File Contains The 30s
           Subunit Of The Second 70s Ribosome, With Gentamicin
           Bound. The Entire Crystal Structure Contains Two 70s
           Ribosomes And Is Described In Remark 400.
 gi|158431373|pdb|2Z4K|C Chain C, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Paromomycin And
           Ribosome Recycling Factor (Rrf). This File Contains The
           30s Subunit Of The First 70s Ribosome, With Paromomycin
           Bound. The Entire Crystal Structure Contains Two 70s
           Ribosomes And Is Described In Remark 400.
 gi|158431426|pdb|2Z4M|C Chain C, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Paromomycin And
           Ribosome Recycling Factor (Rrf). This File Contains The
           30s Subunit Of The Second 70s Ribosome, With Paromomycin
           Bound. The Entire Crystal Structure Contains Two 70s
           Ribosomes And Is Described In Remark 400.
 gi|168988790|pdb|2VHO|C Chain C, Structure Of Pdf Binding Helix In Complex With The
           Ribosome (Part 3 Of 4)
 gi|168988811|pdb|2VHP|C Chain C, Structure Of Pdf Binding Helix In Complex With The
           Ribosome (Part 4 Of 4)
 gi|197107280|pdb|3DF1|C Chain C, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Hygromycin B. This File
           Contains The 30s Subunit Of The First 70s Ribosome, With
           Hygromycin B Bound. The Entire Crystal Structure
           Contains Two 70s Ribosomes.
 gi|197107332|pdb|3DF3|C Chain C, Crystal Structure Of The Bacterial Ribosome From
           Escherichia Coli In Complex With Hygromycin B. This File
           Contains The 30s Subunit Of The Second 70s Ribosome,
           With Hygromycin B Bound. The Entire Crystal Structure
           Contains Two 70s Ribosomes.
 gi|329665994|pdb|3J00|C Chain C, Structure Of The Ribosome-Secye Complex In The Membrane
           Environment
          Length = 232

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/201 (54%), Positives = 147/201 (73%)

Query: 2   GQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTH 61
           GQK++P   RLG+   WNS WFA   E+   L  D K+R+YL   L +A V++I+IER  
Sbjct: 1   GQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPA 60

Query: 62  KNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSIA 121
           K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI 
Sbjct: 61  KSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSIT 120

Query: 122 QQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRAH 181
            QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA 
Sbjct: 121 SQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRAD 180

Query: 182 IDYGTAVAETAYGSCGIKVYV 202
           IDY T+ A T YG  G+KV++
Sbjct: 181 IDYNTSEAHTTYGVIGVKVWI 201


>gi|117620103|ref|YP_854847.1| ribosomal protein S3 [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|152060841|sp|A0KF27|RS3_AERHH RecName: Full=30S ribosomal protein S3
 gi|117561510|gb|ABK38458.1| ribosomal protein S3 [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 237

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   ++   L+ D ++R++L   LK A ++KI IER 
Sbjct: 1   MGQKVHPNGIRLGITKPWNSTWFANTKDFADNLYSDFQVRQFLTKELKNASLSKITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++ +      ++++EV KPE++  L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRKAVAAIAGVPAQINISEVRKPELDGKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYATSEAHTTYGVIGVKVWI 202


>gi|22127865|ref|NP_671288.1| 30S ribosomal protein S3 [Yersinia pestis KIM 10]
 gi|45440073|ref|NP_991612.1| 30S ribosomal protein S3 [Yersinia pestis biovar Microtus str.
           91001]
 gi|51597982|ref|YP_072173.1| 30S ribosomal protein S3 [Yersinia pseudotuberculosis IP 32953]
 gi|108814013|ref|YP_649780.1| 30S ribosomal protein S3 [Yersinia pestis Nepal516]
 gi|123444092|ref|YP_001008062.1| 30S ribosomal protein S3 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|145597458|ref|YP_001161533.1| 30S ribosomal protein S3 [Yersinia pestis Pestoides F]
 gi|150260737|ref|ZP_01917465.1| 30S ribosomal protein S3 [Yersinia pestis CA88-4125]
 gi|153949533|ref|YP_001402857.1| 30S ribosomal protein S3 [Yersinia pseudotuberculosis IP 31758]
 gi|162419812|ref|YP_001605181.1| 30S ribosomal protein S3 [Yersinia pestis Angola]
 gi|165927901|ref|ZP_02223733.1| ribosomal protein S3 [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|166010543|ref|ZP_02231441.1| ribosomal protein S3 [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166213311|ref|ZP_02239346.1| ribosomal protein S3 [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167419228|ref|ZP_02310981.1| ribosomal protein S3 [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425626|ref|ZP_02317379.1| ribosomal protein S3 [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|170022550|ref|YP_001719055.1| 30S ribosomal protein S3 [Yersinia pseudotuberculosis YPIII]
 gi|186897178|ref|YP_001874290.1| 30S ribosomal protein S3 [Yersinia pseudotuberculosis PB1/+]
 gi|218927421|ref|YP_002345296.1| 30S ribosomal protein S3 [Yersinia pestis CO92]
 gi|229836303|ref|ZP_04456470.1| 30S ribosomal subunit protein S3 [Yersinia pestis Pestoides A]
 gi|229840073|ref|ZP_04460232.1| 30S ribosomal subunit protein S3 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842155|ref|ZP_04462310.1| 30S ribosomal subunit protein S3 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229904545|ref|ZP_04519656.1| 30S ribosomal subunit protein S3 [Yersinia pestis Nepal516]
 gi|238752681|ref|ZP_04614152.1| 30S ribosomal protein S3 [Yersinia rohdei ATCC 43380]
 gi|238758770|ref|ZP_04619944.1| 30S ribosomal protein S3 [Yersinia aldovae ATCC 35236]
 gi|238763724|ref|ZP_04624683.1| 30S ribosomal protein S3 [Yersinia kristensenii ATCC 33638]
 gi|238783175|ref|ZP_04627201.1| 30S ribosomal protein S3 [Yersinia bercovieri ATCC 43970]
 gi|238788904|ref|ZP_04632694.1| 30S ribosomal protein S3 [Yersinia frederiksenii ATCC 33641]
 gi|238792944|ref|ZP_04636574.1| 30S ribosomal protein S3 [Yersinia intermedia ATCC 29909]
 gi|238797232|ref|ZP_04640733.1| 30S ribosomal protein S3 [Yersinia mollaretii ATCC 43969]
 gi|270488238|ref|ZP_06205312.1| ribosomal protein S3 [Yersinia pestis KIM D27]
 gi|294502294|ref|YP_003566356.1| 30S ribosomal protein S3 [Yersinia pestis Z176003]
 gi|332163253|ref|YP_004299830.1| 30S ribosomal protein S3 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|27734519|sp|Q8ZJA6|RS3_YERPE RecName: Full=30S ribosomal protein S3
 gi|61215489|sp|Q664S7|RS3_YERPS RecName: Full=30S ribosomal protein S3
 gi|123073065|sp|Q1CCV0|RS3_YERPN RecName: Full=30S ribosomal protein S3
 gi|152060915|sp|A1JS29|RS3_YERE8 RecName: Full=30S ribosomal protein S3
 gi|152060916|sp|A4TGZ8|RS3_YERPP RecName: Full=30S ribosomal protein S3
 gi|189045347|sp|A7FNM9|RS3_YERP3 RecName: Full=30S ribosomal protein S3
 gi|226697779|sp|B2K5M4|RS3_YERPB RecName: Full=30S ribosomal protein S3
 gi|226697780|sp|A9R902|RS3_YERPG RecName: Full=30S ribosomal protein S3
 gi|226697781|sp|B1JIW7|RS3_YERPY RecName: Full=30S ribosomal protein S3
 gi|21961000|gb|AAM87539.1|AE014002_12 30S ribosomal subunit protein S3 [Yersinia pestis KIM 10]
 gi|45434928|gb|AAS60489.1| 30S ribosomal protein S3 [Yersinia pestis biovar Microtus str.
           91001]
 gi|51591264|emb|CAH22930.1| 30S ribosomal protein S3 [Yersinia pseudotuberculosis IP 32953]
 gi|108777661|gb|ABG20180.1| SSU ribosomal protein S3P [Yersinia pestis Nepal516]
 gi|115346032|emb|CAL18898.1| 30S ribosomal protein S3 [Yersinia pestis CO92]
 gi|122091053|emb|CAL13936.1| 30S ribosomal protein S3 [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|145209154|gb|ABP38561.1| SSU ribosomal protein S3P [Yersinia pestis Pestoides F]
 gi|149290145|gb|EDM40222.1| 30S ribosomal protein S3 [Yersinia pestis CA88-4125]
 gi|152961028|gb|ABS48489.1| ribosomal protein S3 [Yersinia pseudotuberculosis IP 31758]
 gi|162352627|gb|ABX86575.1| ribosomal protein S3 [Yersinia pestis Angola]
 gi|165920177|gb|EDR37478.1| ribosomal protein S3 [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990633|gb|EDR42934.1| ribosomal protein S3 [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166205609|gb|EDR50089.1| ribosomal protein S3 [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166963222|gb|EDR59243.1| ribosomal protein S3 [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167055316|gb|EDR65110.1| ribosomal protein S3 [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|169749084|gb|ACA66602.1| ribosomal protein S3 [Yersinia pseudotuberculosis YPIII]
 gi|186700204|gb|ACC90833.1| ribosomal protein S3 [Yersinia pseudotuberculosis PB1/+]
 gi|229678663|gb|EEO74768.1| 30S ribosomal subunit protein S3 [Yersinia pestis Nepal516]
 gi|229690465|gb|EEO82519.1| 30S ribosomal subunit protein S3 [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696439|gb|EEO86486.1| 30S ribosomal subunit protein S3 [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229706371|gb|EEO92378.1| 30S ribosomal subunit protein S3 [Yersinia pestis Pestoides A]
 gi|238698026|gb|EEP90784.1| 30S ribosomal protein S3 [Yersinia kristensenii ATCC 33638]
 gi|238703067|gb|EEP95610.1| 30S ribosomal protein S3 [Yersinia aldovae ATCC 35236]
 gi|238709108|gb|EEQ01355.1| 30S ribosomal protein S3 [Yersinia rohdei ATCC 43380]
 gi|238715971|gb|EEQ07957.1| 30S ribosomal protein S3 [Yersinia bercovieri ATCC 43970]
 gi|238718869|gb|EEQ10684.1| 30S ribosomal protein S3 [Yersinia mollaretii ATCC 43969]
 gi|238722931|gb|EEQ14581.1| 30S ribosomal protein S3 [Yersinia frederiksenii ATCC 33641]
 gi|238727798|gb|EEQ19322.1| 30S ribosomal protein S3 [Yersinia intermedia ATCC 29909]
 gi|262360374|gb|ACY57095.1| 30S ribosomal protein S3 [Yersinia pestis D106004]
 gi|262364326|gb|ACY60883.1| 30S ribosomal protein S3 [Yersinia pestis D182038]
 gi|270336742|gb|EFA47519.1| ribosomal protein S3 [Yersinia pestis KIM D27]
 gi|294352753|gb|ADE63094.1| 30S ribosomal protein S3 [Yersinia pestis Z176003]
 gi|318607738|emb|CBY29236.1| SSU ribosomal protein S3p (S3e) [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|320013348|gb|ADV96919.1| 30S ribosomal subunit protein S3 [Yersinia pestis biovar Medievalis
           str. Harbin 35]
 gi|325667483|gb|ADZ44127.1| 30S ribosomal protein S3 [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861849|emb|CBX72020.1| 30S ribosomal protein S3 [Yersinia enterocolitica W22703]
          Length = 232

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A   E+   L  D K+R++L   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKAWNSTWYANTKEFADNLDSDFKVRQFLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|94676477|ref|YP_588782.1| ribosomal protein S3 [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|123260548|sp|Q1LTD2|RS3_BAUCH RecName: Full=30S ribosomal protein S3
 gi|94219627|gb|ABF13786.1| ribosomal protein S3 [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 233

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/210 (51%), Positives = 152/210 (72%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG+   WNS W+A   E+   L+ D K+R++L   L +A +++++IER 
Sbjct: 1   MGQKVHPNGFRLGIIKYWNSTWYANKKEFAQYLNSDFKVRQFLASELTKASISRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ RI +++ARPG+IIGKKG D+EK+RK +S +      +++ EV KPE+NA L+A+SI
Sbjct: 61  AKSIRITIHTARPGIIIGKKGEDVEKLRKSISLIAGVPSQINIAEVRKPELNAKLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             Q+ERRV+FRRAMKRAVQ+ +R GA G+KV  SGRL+G E++RTE Y EGRVPL TLRA
Sbjct: 121 VSQIERRVIFRRAMKRAVQNTIRLGAKGIKVEVSGRLSGVEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            IDY  + A T YG  G+KV++  + E+ D
Sbjct: 181 DIDYHVSEAHTTYGVIGVKVWI-FKGEILD 209


>gi|320540603|ref|ZP_08040253.1| 30S ribosomal subunit protein S3 [Serratia symbiotica str. Tucson]
 gi|320029534|gb|EFW11563.1| 30S ribosomal subunit protein S3 [Serratia symbiotica str. Tucson]
          Length = 232

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A   E+   L  D K+R++L   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWYANTKEFADNLDSDFKVRQFLAKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVDVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|261854956|ref|YP_003262239.1| ribosomal protein S3 [Halothiobacillus neapolitanus c2]
 gi|261835425|gb|ACX95192.1| ribosomal protein S3 [Halothiobacillus neapolitanus c2]
          Length = 224

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 106/205 (51%), Positives = 155/205 (75%), Gaps = 3/205 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P+ FRLG++  W SRW+A    +   L++D++ R +++  LK+A V++I IER 
Sbjct: 1   MGQKVHPVGFRLGISSDWTSRWYADSKLFPVQLNQDVRTRAFIKDKLKEASVSRIQIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSE---IHLSVNEVPKPEINATLIA 117
            ++  + +++ARPG++IG+KG DIE++R +++ M   +   + LSV E+ KPE++A L+A
Sbjct: 61  ARSASVTIHTARPGIVIGRKGEDIERLRGEIAPMLGVDRNAVKLSVEEIRKPELDAQLVA 120

Query: 118 QSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQT 177
           +SIAQQLERR++FRRAMKRAVQ++MR GA G+KV  SGRL GAE++R E Y EGRVPL T
Sbjct: 121 ESIAQQLERRIMFRRAMKRAVQTSMRLGAGGIKVNVSGRLGGAEIARNEWYREGRVPLHT 180

Query: 178 LRAHIDYGTAVAETAYGSCGIKVYV 202
           LRA IDYG A A+T YG  G+KV++
Sbjct: 181 LRADIDYGFAEAQTTYGVIGVKVWI 205


>gi|319775283|ref|YP_004137771.1| 30S ribosomal subunit protein S3 [Haemophilus influenzae F3047]
 gi|317449874|emb|CBY86085.1| 30S ribosomal subunit protein S3 [Haemophilus influenzae F3047]
          Length = 235

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/225 (49%), Positives = 156/225 (69%), Gaps = 1/225 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W+S WFA   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVHPHGIRLGIVKPWSSTWFANTQDFADNLEGDFKVRKFLNKELANASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  +S + +    +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVSKIASVPAQINIAEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQSAMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQSAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDY TA A T YG  G+KV++  + E+    + +  +E +  +K
Sbjct: 181 DIDYNTAEAHTTYGVIGVKVWI-FKGEILGGMAAVAQSEQQPADK 224


>gi|116667412|pdb|2GY9|C Chain C, Structure Of The 30s Subunit Of A Pre-Translocational E.
           Coli Ribosome Obtained By Fitting Atomic Models For Rna
           And Protein Components Into Cryo-Em Map Emd-1056
 gi|116667464|pdb|2GYB|C Chain C, Structure Of The 30s Subunit Of A Secm-Stalled E. Coli
           Ribosome Complex Obtained By Fitting Atomic Models For
           Rna And Protein Components Into Cryo-Em Map Emd-1143
 gi|224510724|pdb|3FIH|C Chain C, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
           Consists Of The 30s Subunit, Trnas And The Ternary
           Complex.
 gi|294662219|pdb|2WWL|C Chain C, E.Coli 70s Ribosome Stalled During Translation Of Tnac
           Leader Peptide. This File Contains The 30s, The P-Site
           Trna And The Tnac Leader Peptide (Part 1 Of 2).
 gi|308387967|pdb|3OFO|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
           Erythromycin. This File Contains The 30s Subunit Of The
           First 70s Ribosome.
 gi|308387988|pdb|3OFP|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
           Erythromycin. This File Contains The 30s Subunit Of The
           Second 70s Ribosome.
 gi|309320025|pdb|3OFA|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
           Chloramphenicol. This File Contains The 30s Subunit Of
           The First 70s Ribosome.
 gi|309320046|pdb|3OFB|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
           Chloramphenicol. This File Contains The 30s Subunit Of
           The Second 70s Ribosome.
 gi|309320129|pdb|3OFX|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
           Clindamycin. This File Contains The 30s Subunit Of The
           First 70s Ribosome.
 gi|309320150|pdb|3OFY|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
           Clindamycin. This File Contains The 30s Subunit Of The
           Second 70s Ribosome
 gi|315113614|pdb|3OAQ|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
           Telithromycin. This File Contains The 30s Subunit Of The
           First 70s Ribosome.
 gi|315113635|pdb|3OAR|C Chain C, Crystal Structure Of The E. Coli Ribosome Bound To
           Telithromycin. This File Contains The 30s Subunit Of The
           Second 70s Ribosome
          Length = 206

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/201 (54%), Positives = 147/201 (73%)

Query: 2   GQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTH 61
           GQK++P   RLG+   WNS WFA   E+   L  D K+R+YL   L +A V++I+IER  
Sbjct: 1   GQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPA 60

Query: 62  KNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSIA 121
           K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI 
Sbjct: 61  KSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSIT 120

Query: 122 QQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRAH 181
            QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA 
Sbjct: 121 SQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRAD 180

Query: 182 IDYGTAVAETAYGSCGIKVYV 202
           IDY T+ A T YG  G+KV++
Sbjct: 181 IDYNTSEAHTTYGVIGVKVWI 201


>gi|54778756|gb|AAV39590.1| ribosomal protein S3 [synthetic construct]
          Length = 260

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/201 (54%), Positives = 147/201 (73%)

Query: 2   GQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTH 61
           GQK++P   RLG+   WNS WFA   E+   L  D K+R+YL   L +A V++I+IER  
Sbjct: 26  GQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPA 85

Query: 62  KNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSIA 121
           K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI 
Sbjct: 86  KSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSIT 145

Query: 122 QQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRAH 181
            QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA 
Sbjct: 146 SQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRAD 205

Query: 182 IDYGTAVAETAYGSCGIKVYV 202
           IDY T+ A T YG  G+KV++
Sbjct: 206 IDYNTSEAHTTYGVIGVKVWI 226


>gi|291619169|ref|YP_003521911.1| RpsC [Pantoea ananatis LMG 20103]
 gi|291154199|gb|ADD78783.1| RpsC [Pantoea ananatis LMG 20103]
 gi|327395499|dbj|BAK12921.1| 30S ribosomal protein S3 RpsC [Pantoea ananatis AJ13355]
          Length = 232

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   E+   L  D K+R+YL   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRTVVAKIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|15803841|ref|NP_289875.1| 30S ribosomal protein S3 [Escherichia coli O157:H7 EDL933]
 gi|25294470|pir||G85996 30S ribosomal subunit protein S3 [imported] - Escherichia coli
           (strain O157:H7, substrain EDL933)
 gi|12517946|gb|AAG58435.1|AE005557_4 30S ribosomal subunit protein S3 [Escherichia coli O157:H7 str.
           EDL933]
          Length = 233

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   E+   L  D K+R+YL   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y E RVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREXRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|315453729|ref|YP_004073999.1| 30S ribosomal protein S3 [Helicobacter felis ATCC 49179]
 gi|315132781|emb|CBY83409.1| 30S ribosomal protein S3 [Helicobacter felis ATCC 49179]
          Length = 235

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/202 (55%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF    +    + ED +IR++L+  L  AGV++I+IER 
Sbjct: 1   MGQKVNPIGLRLGINKNWASRWFPGTHDTVQNIEEDHRIRKFLKKELYYAGVSEIVIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  RI V +ARPGLIIGK+G DIEKI+  L N+   +I LS+ EV +P+ +A L+A+++
Sbjct: 61  AKKLRITVVAARPGLIIGKQGVDIEKIKVSLKNLIKRDIALSIKEVKRPQADAQLVAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q+AM+ GA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 ATQLEKRVAFRRAMKKVMQTAMKSGARGIKVRVSGRLAGAEIARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAMTVYGIIGVKVWI 202


>gi|293393305|ref|ZP_06637619.1| 30S ribosomal protein S3 [Serratia odorifera DSM 4582]
 gi|291424215|gb|EFE97430.1| 30S ribosomal protein S3 [Serratia odorifera DSM 4582]
          Length = 232

 Score =  233 bits (593), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A   E+   L  D K+R++L   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWYANTKEFADNLDSDFKVRQFLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|42524369|ref|NP_969749.1| 30S ribosomal protein S3 [Bdellovibrio bacteriovorus HD100]
 gi|61215579|sp|Q6MJ20|RS3_BDEBA RecName: Full=30S ribosomal protein S3
 gi|39576578|emb|CAE80742.1| 30S ribosomal protein S3 [Bdellovibrio bacteriovorus HD100]
          Length = 221

 Score =  232 bits (592), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 107/209 (51%), Positives = 161/209 (77%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  R+GV  TW+SRW+A+G +Y   LHED+++R++L+  LK AGVAKI +ER 
Sbjct: 1   MGQKVNPIGLRVGVIRTWDSRWYAKGQQYYENLHEDIRLRKFLKDKLKNAGVAKIEMERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  +II+ +ARPG++IGKKG+ I+ ++ ++  +T +E+ LS+ EV KP+++A L+A+SI
Sbjct: 61  AKKIKIIISTARPGVVIGKKGSGIDALKAEVQKLTPNEVFLSIQEVRKPDLDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+R+ +RRA+K+++ +A++ G  G+K+  SGRL+GAE++R+E Y E  VPL TLRA
Sbjct: 121 AQQLEKRISWRRALKKSIAAAIKGGVRGIKIRVSGRLDGAEIARSEWYNEKSVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVS 209
            IDYGTA + TAYG  G+KV++   D +S
Sbjct: 181 DIDYGTAESLTAYGIIGLKVWIYKGDILS 209


>gi|260581601|ref|ZP_05849398.1| ribosomal protein S3 [Haemophilus influenzae NT127]
 gi|260095194|gb|EEW79085.1| ribosomal protein S3 [Haemophilus influenzae NT127]
          Length = 235

 Score =  232 bits (592), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/225 (49%), Positives = 155/225 (68%), Gaps = 1/225 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W+S WFA   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVHPHGIRLGIVKPWSSTWFANTQDFADNLEGDFKVRKFLNKELANASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  +S +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNTVSKIAGVPAQINIAEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQSAMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQSAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDY TA A T YG  G+KV++  + E+    + +  +E +  +K
Sbjct: 181 DIDYNTAEAHTTYGVIGVKVWI-FKGEILGGMAAVAQSEQQPTDK 224


>gi|303328088|ref|ZP_07358527.1| ribosomal protein S3 [Desulfovibrio sp. 3_1_syn3]
 gi|302861914|gb|EFL84849.1| ribosomal protein S3 [Desulfovibrio sp. 3_1_syn3]
          Length = 213

 Score =  232 bits (592), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/212 (52%), Positives = 152/212 (71%), Gaps = 2/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG N  W SRWF++  EY A ++ED KIR +++  L  AG++KI IER 
Sbjct: 1   MGQKVHPFGFRLGYNKNWQSRWFSK-KEYPAFVYEDSKIRAFVKKLLYHAGLSKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+I+ +ARPG++IG+KG +IEK+R  L      E  L VNE+ +PE++A L+A++I
Sbjct: 60  GGKVRLILSTARPGIVIGRKGVEIEKLRGDLRQKFGREFSLEVNEIRRPEVDAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKR V  A +FG +G+KV  +GRL GAE++RTE Y +GRVPLQTLRA
Sbjct: 120 AQQLERRVAFRRAMKRTVSMARKFGGEGIKVTCAGRLAGAEIARTEWYRDGRVPLQTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            ID+G A A T YG  G+KV++  + E+ D +
Sbjct: 180 DIDFGFAEARTTYGIIGVKVWI-YKGEILDKE 210


>gi|68249379|ref|YP_248491.1| 30S ribosomal protein S3 [Haemophilus influenzae 86-028NP]
 gi|145628326|ref|ZP_01784127.1| 30S ribosomal protein S3 [Haemophilus influenzae 22.1-21]
 gi|145630528|ref|ZP_01786308.1| 30S ribosomal protein S3 [Haemophilus influenzae R3021]
 gi|145632137|ref|ZP_01787872.1| 30S ribosomal protein S3 [Haemophilus influenzae 3655]
 gi|145634806|ref|ZP_01790514.1| 30S ribosomal protein S3 [Haemophilus influenzae PittAA]
 gi|145636660|ref|ZP_01792327.1| 30S ribosomal protein S3 [Haemophilus influenzae PittHH]
 gi|145638417|ref|ZP_01794027.1| 30S ribosomal protein S3 [Haemophilus influenzae PittII]
 gi|145640878|ref|ZP_01796460.1| 30S ribosomal protein S3 [Haemophilus influenzae R3021]
 gi|148826572|ref|YP_001291325.1| 30S ribosomal protein S3 [Haemophilus influenzae PittEE]
 gi|148827972|ref|YP_001292725.1| 30S ribosomal protein S3 [Haemophilus influenzae PittGG]
 gi|229844650|ref|ZP_04464789.1| 30S ribosomal protein S3 [Haemophilus influenzae 6P18H1]
 gi|229845833|ref|ZP_04465945.1| 30S ribosomal protein S3 [Haemophilus influenzae 7P49H1]
 gi|319897723|ref|YP_004135920.1| 30S ribosomal subunit protein s3 [Haemophilus influenzae F3031]
 gi|329122789|ref|ZP_08251361.1| 30S ribosomal protein S3 [Haemophilus aegyptius ATCC 11116]
 gi|81336194|sp|Q4QMB6|RS3_HAEI8 RecName: Full=30S ribosomal protein S3
 gi|172048052|sp|A5UDU1|RS3_HAEIE RecName: Full=30S ribosomal protein S3
 gi|172048056|sp|A5UHT6|RS3_HAEIG RecName: Full=30S ribosomal protein S3
 gi|68057578|gb|AAX87831.1| 30S ribosomal protein S3 [Haemophilus influenzae 86-028NP]
 gi|144980101|gb|EDJ89760.1| 30S ribosomal protein S3 [Haemophilus influenzae 22.1-21]
 gi|144983918|gb|EDJ91360.1| 30S ribosomal protein S3 [Haemophilus influenzae R3021]
 gi|144987044|gb|EDJ93574.1| 30S ribosomal protein S3 [Haemophilus influenzae 3655]
 gi|145267972|gb|EDK07968.1| 30S ribosomal protein S3 [Haemophilus influenzae PittAA]
 gi|145270186|gb|EDK10122.1| 30S ribosomal protein S3 [Haemophilus influenzae PittHH]
 gi|145272746|gb|EDK12653.1| 30S ribosomal protein S3 [Haemophilus influenzae PittII]
 gi|145274392|gb|EDK14256.1| 30S ribosomal protein S3 [Haemophilus influenzae 22.4-21]
 gi|148716732|gb|ABQ98942.1| 30S ribosomal protein S3 [Haemophilus influenzae PittEE]
 gi|148719214|gb|ABR00342.1| 30S ribosomal protein S3 [Haemophilus influenzae PittGG]
 gi|229810837|gb|EEP46554.1| 30S ribosomal protein S3 [Haemophilus influenzae 7P49H1]
 gi|229812364|gb|EEP48054.1| 30S ribosomal protein S3 [Haemophilus influenzae 6P18H1]
 gi|301169500|emb|CBW29101.1| 30S ribosomal subunit protein S3 [Haemophilus influenzae 10810]
 gi|309751556|gb|ADO81540.1| 30S ribosomal protein S3 [Haemophilus influenzae R2866]
 gi|309973726|gb|ADO96927.1| 30S ribosomal protein S3 [Haemophilus influenzae R2846]
 gi|317433229|emb|CBY81604.1| 30S ribosomal subunit protein S3 [Haemophilus influenzae F3031]
 gi|327472053|gb|EGF17491.1| 30S ribosomal protein S3 [Haemophilus aegyptius ATCC 11116]
          Length = 235

 Score =  232 bits (592), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 112/225 (49%), Positives = 155/225 (68%), Gaps = 1/225 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W+S WFA   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVHPHGIRLGIVKPWSSTWFANTQDFADNLEGDFKVRKFLNKELANASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  +S +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVSKIAGVPAQINIAEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQSAMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQSAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDY TA A T YG  G+KV++  + E+    + +  +E +  +K
Sbjct: 181 DIDYNTAEAHTTYGVIGVKVWI-FKGEILGGMAAVAQSEQQPADK 224


>gi|108762029|ref|YP_631504.1| 30S ribosomal protein S3 [Myxococcus xanthus DK 1622]
 gi|122981077|sp|Q1D769|RS3_MYXXD RecName: Full=30S ribosomal protein S3
 gi|108465909|gb|ABF91094.1| ribosomal protein S3 [Myxococcus xanthus DK 1622]
          Length = 220

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/221 (50%), Positives = 154/221 (69%), Gaps = 1/221 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI FRLGV  TW+S+WF     Y   LHED++IRE+++  L  AGV+K+ IER 
Sbjct: 1   MGQKVHPIGFRLGVIKTWDSKWFEH-KNYAQWLHEDIRIREFVKKSLNHAGVSKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ V++ARPG++IGK+G  IE ++K L   T +E+ L++ EV K E +A L+A++I
Sbjct: 60  ANKVKVNVHTARPGIVIGKRGAGIETVKKDLQQFTKNEVFLNIVEVRKAETDAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK+A+Q+AM+FGA G++V  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 120 ATQLERRIAFRRAMKKALQTAMKFGAKGIRVACSGRLGGAEMARYEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDYG A A+T YG  G KV+V   + +       P   +R
Sbjct: 180 DIDYGFAEAKTTYGKIGCKVWVCKGEVLPGKGGQAPMPSNR 220


>gi|307543831|ref|YP_003896310.1| 30S ribosomal protein S3 [Halomonas elongata DSM 2581]
 gi|307215855|emb|CBV41125.1| 30S ribosomal protein S3 [Halomonas elongata DSM 2581]
          Length = 232

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG+     S W+A    Y   L+ DL++R +L+  LK A V+ I+IER 
Sbjct: 1   MGQKVNPTGIRLGIVKDHTSVWYAERGAYADKLNNDLEVRSFLEERLKNASVSNIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
             N RI +++ARPG++IGKKG D++K+R+ LS M    +H+++ EV KPE++A L+AQ+I
Sbjct: 61  ANNARITIHTARPGIVIGKKGEDVDKLRRDLSQMMGVPVHVNIEEVRKPELDAKLVAQNI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKR+VQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AGQLERRVMFRRAMKRSVQNAMRLGAGGIKVQLSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            ID+ T  A+T YG  G+KV++
Sbjct: 181 DIDFATYEAKTTYGIIGVKVWI 202


>gi|16272724|ref|NP_438942.1| 30S ribosomal protein S3 [Haemophilus influenzae Rd KW20]
 gi|260579874|ref|ZP_05847704.1| ribosomal protein S3 [Haemophilus influenzae RdAW]
 gi|1173250|sp|P44372|RS3_HAEIN RecName: Full=30S ribosomal protein S3
 gi|1573793|gb|AAC22442.1| ribosomal protein S3 (rpS3) [Haemophilus influenzae Rd KW20]
 gi|260093158|gb|EEW77091.1| ribosomal protein S3 [Haemophilus influenzae RdAW]
          Length = 235

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/225 (49%), Positives = 155/225 (68%), Gaps = 1/225 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W+S WFA   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVHPHGIRLGIVKPWSSTWFANTQDFADNLEGDFKVRKFLNKELASASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  +S +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVSKIAGVPAQINIAEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQSAMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQSAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDY TA A T YG  G+KV++  + E+    + +  +E +  +K
Sbjct: 181 DIDYNTAEAHTTYGVIGVKVWI-FKGEILGGMAAVAQSEQQPADK 224


>gi|262273373|ref|ZP_06051187.1| SSU ribosomal protein S3p (S3e) [Grimontia hollisae CIP 101886]
 gi|262222351|gb|EEY73662.1| SSU ribosomal protein S3p (S3e) [Grimontia hollisae CIP 101886]
          Length = 229

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   ++   L  D K+R++L   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGICKPWNSTWFANSQDFADNLDGDFKVRQFLTKELSKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R +++ +      +++ EV KPE++A L+  SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRARVAQLAGVPAQINIAEVRKPELDAQLVGDSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  GIKV++
Sbjct: 181 DIDYATSSAHTTYGVIGIKVWI 202


>gi|237806881|ref|YP_002891321.1| 30S ribosomal protein S3 [Tolumonas auensis DSM 9187]
 gi|237499142|gb|ACQ91735.1| ribosomal protein S3 [Tolumonas auensis DSM 9187]
          Length = 238

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 151/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   +NS W+A   E+   LH D ++R+YL   LK A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGITKPFNSTWYANTKEFADNLHGDFQVRQYLTKELKAASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK+++++      +++ EV KPE+++ L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRKQIASIAGVPAQINIAEVRKPELDSQLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           + QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 SSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYATSEAHTTYGVIGVKVWI 202


>gi|85060250|ref|YP_455952.1| 30S ribosomal protein S3 [Sodalis glossinidius str. 'morsitans']
 gi|123766382|sp|Q2NQM8|RS3_SODGM RecName: Full=30S ribosomal protein S3
 gi|84780770|dbj|BAE75547.1| 30S ribosomal protein S3 [Sodalis glossinidius str. 'morsitans']
          Length = 232

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 149/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A   E+   L  D K+R++L   L +A V++++IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWYANTKEFADNLDSDFKVRQFLTKELSKASVSRLVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           + QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 SSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|157960020|ref|YP_001500054.1| 30S ribosomal protein S3 [Shewanella pealeana ATCC 700345]
 gi|167626033|ref|YP_001676327.1| 30S ribosomal protein S3 [Shewanella halifaxensis HAW-EB4]
 gi|157845020|gb|ABV85519.1| ribosomal protein S3 [Shewanella pealeana ATCC 700345]
 gi|167356055|gb|ABZ78668.1| ribosomal protein S3 [Shewanella halifaxensis HAW-EB4]
          Length = 229

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 111/210 (52%), Positives = 153/210 (72%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W S W+A  S+Y   L  D ++R++L+  LKQA V+KI+IER 
Sbjct: 1   MGQKVHPNGIRLGITKPWISTWYADKSDYANNLSSDWEVRKFLEKKLKQASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +T     +++ E+ KPE++A L+A  I
Sbjct: 61  AKSVRVTIHTARPGVVIGKKGEDVEKLRNAVAKLTGIPAQINIAEIRKPELDAKLVADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            IDY T+ + T YG  G+KV+V  + EV D
Sbjct: 181 DIDYSTSESHTQYGVIGVKVWV-FKGEVLD 209


>gi|32491298|ref|NP_871552.1| hypothetical protein WGLp549 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|30173138|sp|Q8D206|RS3_WIGBR RecName: Full=30S ribosomal protein S3
 gi|25166505|dbj|BAC24695.1| rpsC [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 236

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 151/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG+  +W+S W+A   E+   L  D K+RE+L+  L +A V+K++IER 
Sbjct: 1   MGQKVNPNGIRLGIIKSWSSTWYANTKEFSKNLISDFKVREFLKKSLSKAYVSKLIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ RI +Y+ARPG++IG+KG D++K+RK++SN+T     +S+ E+ +PE++A L++++I
Sbjct: 61  AKSIRINIYTARPGIVIGRKGEDVDKLRKEISNITGVPAQISITEIKRPELDAKLVSENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR++FRRAMKRAVQ+A+R GA G+KV  SGRL GAE++R E Y EGRVPL T RA
Sbjct: 121 ASQLERRIMFRRAMKRAVQNAIRLGAKGIKVEVSGRLGGAEIARKEWYREGRVPLHTFRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV +
Sbjct: 181 DIDYNTSEAHTTYGIIGVKVTI 202


>gi|108809248|ref|YP_653164.1| 30S ribosomal protein S3 [Yersinia pestis Antiqua]
 gi|167398347|ref|ZP_02303871.1| ribosomal protein S3 [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|123372094|sp|Q1C2V3|RS3_YERPA RecName: Full=30S ribosomal protein S3
 gi|108781161|gb|ABG15219.1| SSU ribosomal protein S3P [Yersinia pestis Antiqua]
 gi|167050851|gb|EDR62259.1| ribosomal protein S3 [Yersinia pestis biovar Antiqua str.
           UG05-0454]
          Length = 232

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A   E+   L  D K+R++L   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKAWNSTWYANTKEFADNLDSDFKVRQFLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ISQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|322515629|ref|ZP_08068607.1| 30S ribosomal protein S3 [Actinobacillus ureae ATCC 25976]
 gi|322118280|gb|EFX90563.1| 30S ribosomal protein S3 [Actinobacillus ureae ATCC 25976]
          Length = 234

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 145/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTQDFADNLEGDFKVRKFLNKELANASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  +S +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVSQIAGVPAQINIAEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A T YG  G+KV++
Sbjct: 181 DIDYNTAEAHTTYGVIGVKVWI 202


>gi|121997643|ref|YP_001002430.1| 30S ribosomal protein S3 [Halorhodospira halophila SL1]
 gi|152060865|sp|A1WVB6|RS3_HALHL RecName: Full=30S ribosomal protein S3
 gi|121589048|gb|ABM61628.1| SSU ribosomal protein S3P [Halorhodospira halophila SL1]
          Length = 228

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/219 (50%), Positives = 158/219 (72%), Gaps = 1/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K +P  FRLGV   W S W+A  S +G  L+ DL++RE+++  LK A V++I IER 
Sbjct: 1   MGNKTHPTGFRLGVTEDWRSMWYADSSNFGKYLNTDLEVREFIRERLKNASVSRIQIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN  + +++ARPG++IGKKG DI+++R +++      +H+++ E+ KPE ++ L+A+SI
Sbjct: 61  AKNALVTIHTARPGIVIGKKGEDIDRLRGEVAARMGVPVHINIEEIRKPEADSKLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRA+KRAV +A R GA G+KV  SGRLNG+E++RTE Y EGRVPL TLRA
Sbjct: 121 AGQLERRVMFRRALKRAVGNAQRVGAQGIKVQVSGRLNGSEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDYG A A+T YG  G+KV++  + E+ D+++    AE
Sbjct: 181 DIDYGFAEAKTTYGVIGVKVWI-FKGEIIDTENEGAPAE 218


>gi|32035719|ref|ZP_00135600.1| COG0092: Ribosomal protein S3 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126209230|ref|YP_001054455.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae L20]
 gi|165977202|ref|YP_001652795.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|303250018|ref|ZP_07336220.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|303253192|ref|ZP_07339341.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|307246695|ref|ZP_07528765.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|307248837|ref|ZP_07530850.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|307251064|ref|ZP_07532988.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|307253450|ref|ZP_07535321.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|307255680|ref|ZP_07537484.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|307257863|ref|ZP_07539620.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|307260132|ref|ZP_07541842.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|307262261|ref|ZP_07543910.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|307264470|ref|ZP_07546055.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
 gi|152060840|sp|A3N364|RS3_ACTP2 RecName: Full=30S ribosomal protein S3
 gi|126098022|gb|ABN74850.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar
           5b str. L20]
 gi|165877303|gb|ABY70351.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar 3
           str. JL03]
 gi|302647874|gb|EFL78081.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar 2
           str. 4226]
 gi|302651081|gb|EFL81235.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306852395|gb|EFM84630.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
 gi|306854764|gb|EFM86954.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar 2
           str. S1536]
 gi|306856894|gb|EFM89026.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar 4
           str. M62]
 gi|306859129|gb|EFM91171.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar 6
           str. Femo]
 gi|306861357|gb|EFM93347.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar 9
           str. CVJ13261]
 gi|306863769|gb|EFM95695.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar
           10 str. D13039]
 gi|306865778|gb|EFM97656.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar
           11 str. 56153]
 gi|306868024|gb|EFM99851.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar
           12 str. 1096]
 gi|306870167|gb|EFN01926.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar
           13 str. N273]
          Length = 235

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 145/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTQDFADNLDGDFKVRKFLNKELANASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  +S +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVSQIAGVPAQINIAEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A T YG  G+KV++
Sbjct: 181 DIDYNTAEAHTTYGVIGVKVWI 202


>gi|319955862|ref|YP_004167125.1| SSU ribosomal protein s3p [Nitratifractor salsuginis DSM 16511]
 gi|319418266|gb|ADV45376.1| SSU ribosomal protein S3P [Nitratifractor salsuginis DSM 16511]
          Length = 230

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRW+       + + ED KIR++L+  L  AGV+ I+IERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWYPAKDRAPSFVAEDHKIRKFLKKELFFAGVSNIIIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  RI + +ARPG+IIGK+G DIEK++ KL  M   ++ +++ E  +P+ +A L A++I
Sbjct: 61  VKKIRITIVTARPGIIIGKRGADIEKLKAKLQKMLGKDVAINIKEEKRPQASAQLAAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK+A+Q A++ GA G+KV  SGRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 ATQLERRVAFRRAMKKAIQGALKSGAKGIKVQVSGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG+ G+KV++
Sbjct: 181 KIDYGFAEALTTYGNIGVKVWI 202


>gi|34558021|ref|NP_907836.1| 30S ribosomal protein S3 [Wolinella succinogenes DSM 1740]
 gi|61215661|sp|Q7M8E0|RS3_WOLSU RecName: Full=30S ribosomal protein S3
 gi|34483739|emb|CAE10736.1| 30S RIBOSOMAL PROTEIN S3 [Wolinella succinogenes]
          Length = 236

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF         + ED KIR++L+  L  AGV++I+IERT
Sbjct: 1   MGQKVNPIGLRLGINRNWASRWFPNYQTAPLNISEDHKIRKFLKKELYYAGVSEIIIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPG+IIGKKG DIEK+++ L  + + EI +++ EV +P+ NA L A+++
Sbjct: 61  AKKLRVTVVAARPGIIIGKKGADIEKLKEALKKIVDKEISINIKEVKRPQANAQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV FRRAMK+ +Q+AM+ GA G+K+  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 TMQLERRVAFRRAMKKVMQAAMKAGAKGIKIKVSGRLAGAEMARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G KV++
Sbjct: 181 KIDYGFAEAMTTYGIIGAKVWI 202


>gi|78484646|ref|YP_390571.1| ribosomal protein S3 [Thiomicrospira crunogena XCL-2]
 gi|91207847|sp|Q31IX6|RS3_THICR RecName: Full=30S ribosomal protein S3
 gi|78362932|gb|ABB40897.1| SSU ribosomal protein S3P [Thiomicrospira crunogena XCL-2]
          Length = 228

 Score =  232 bits (591), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLG+   WN+RW+A    Y   L  D++IR+ L   LK A V++I IER 
Sbjct: 1   MGQKVHPIGIRLGITKDWNARWYADSKNYSDFLISDIEIRKELNEKLKHASVSQINIERV 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+ +++ARPG++IGKKG DIEK+++ L   T   +++++ E+ KPE++A L+A+ I
Sbjct: 61  ANGVRVTIHTARPGVVIGKKGEDIEKLKQALIAKTGMPVNINIEEIKKPELDAKLVAEGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+R+ FRRAMKRAV +AMR GA G+KV  SGRLNGAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLEKRIQFRRAMKRAVSNAMRLGAQGIKVNVSGRLNGAEIARAEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A+T YG  G+KV++
Sbjct: 181 DIDYATFEADTTYGKIGVKVWI 202


>gi|86158363|ref|YP_465148.1| SSU ribosomal protein S3P [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123723040|sp|Q2IJ82|RS3_ANADE RecName: Full=30S ribosomal protein S3
 gi|85774874|gb|ABC81711.1| SSU ribosomal protein S3P [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 224

 Score =  232 bits (591), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 111/208 (53%), Positives = 157/208 (75%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI FRLGV  +W+S+W+     Y   LHED+K+RE+++  L QAG+++I IER 
Sbjct: 1   MGQKVHPIGFRLGVIRSWDSKWYEE-KNYAKWLHEDIKLREFVKEKLGQAGISRIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I V++ARPG++IGK+G  IE I+K L  +T++E++L+V EV K E +A L+A++I
Sbjct: 60  ANKVKINVHTARPGIVIGKRGAGIETIKKDLQGLTDNEVYLNVVEVRKAETDAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK++VQ+A++FGA G++V  SGRL G+E++R E Y EGRVPL TLRA
Sbjct: 120 ATQLERRIAFRRAMKKSVQTALKFGAKGIRVACSGRLGGSEMARYEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDYG A A+T YG  G KV++ +R EV
Sbjct: 180 DIDYGFAEAKTTYGKIGCKVWI-MRGEV 206


>gi|238754181|ref|ZP_04615539.1| 30S ribosomal protein S3 [Yersinia ruckeri ATCC 29473]
 gi|238707677|gb|EEQ00037.1| 30S ribosomal protein S3 [Yersinia ruckeri ATCC 29473]
          Length = 232

 Score =  232 bits (591), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A   E+   L  D K+R++L   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWYANTKEFADNLDSDFKVRQFLTKELVKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|197122345|ref|YP_002134296.1| ribosomal protein S3 [Anaeromyxobacter sp. K]
 gi|220917127|ref|YP_002492431.1| ribosomal protein S3 [Anaeromyxobacter dehalogenans 2CP-1]
 gi|226697661|sp|B4UBA5|RS3_ANASK RecName: Full=30S ribosomal protein S3
 gi|254764508|sp|B8J866|RS3_ANAD2 RecName: Full=30S ribosomal protein S3
 gi|196172194|gb|ACG73167.1| ribosomal protein S3 [Anaeromyxobacter sp. K]
 gi|219954981|gb|ACL65365.1| ribosomal protein S3 [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 224

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 111/208 (53%), Positives = 157/208 (75%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI FRLGV  +W+S+W+     Y   LHED+K+RE+++  L QAG+++I IER 
Sbjct: 1   MGQKVHPIGFRLGVIRSWDSKWYEE-KNYAKWLHEDIKLREFVKEKLGQAGISRIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I V++ARPG++IGK+G  IE I+K L  +T++E++L+V EV K E +A L+A++I
Sbjct: 60  ANKVKINVHTARPGIVIGKRGAGIETIKKDLQGLTDNEVYLNVVEVRKAETDAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK++VQ+A++FGA G++V  SGRL G+E++R E Y EGRVPL TLRA
Sbjct: 120 ATQLERRIAFRRAMKKSVQTALKFGAKGIRVACSGRLGGSEMARYEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDYG A A+T YG  G KV++ +R EV
Sbjct: 180 DIDYGFAEAKTTYGKIGCKVWI-MRGEV 206


>gi|152993899|ref|YP_001359620.1| 30S ribosomal protein S3 [Sulfurovum sp. NBC37-1]
 gi|189045340|sp|A6QCQ4|RS3_SULNB RecName: Full=30S ribosomal protein S3
 gi|151425760|dbj|BAF73263.1| 30S ribosomal protein S3 [Sulfurovum sp. NBC37-1]
          Length = 232

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 111/221 (50%), Positives = 150/221 (67%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF         + ED KIR++L+  L  AGV+ I+IERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPAKERTADFIAEDYKIRKFLKKELFYAGVSNIIIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  RI + +ARPG+IIGKKG DIEK++  L  M   ++ +++ E  +P+ +  L A+++
Sbjct: 61  AKKLRINIITARPGIIIGKKGADIEKLKTTLVKMLGKDVAINIKEEKRPQASGQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK+ +Q A++ GA G+K+  SGRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 ATQLERRVAFRRAMKKVIQGALKSGAKGIKISVSGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDYG A A+T YG  GIKV++   + ++      PA E +
Sbjct: 181 KIDYGFAEAQTTYGIIGIKVWIFKGEVLAKGIQPEPAEEKK 221


>gi|209693930|ref|YP_002261858.1| 30S ribosomal protein S3 [Aliivibrio salmonicida LFI1238]
 gi|226697660|sp|B6EPT1|RS3_ALISL RecName: Full=30S ribosomal protein S3
 gi|208007881|emb|CAQ78011.1| 30S ribosomal subunit protein S3 [Aliivibrio salmonicida LFI1238]
          Length = 232

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   E+   L  D K+R+YL   LK+A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNATWFASSQEFADNLDGDFKVRQYLTKELKKASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRAGVAKIAGVPAQINIAEVRKPELDAHLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV   GRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAQGIKVQVGGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A T YG  G+KV++
Sbjct: 181 DIDYATASAHTQYGVIGVKVWI 202


>gi|329298527|ref|ZP_08255863.1| 30S ribosomal protein S3 [Plautia stali symbiont]
          Length = 232

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   E+   L  D K+R++L   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTEEFADNLDSDFKVRQFLNKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARP ++IGKKG D+EK+R  ++N+      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPAIVIGKKGEDVEKLRTVVANIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|270264367|ref|ZP_06192633.1| 30S ribosomal protein S3 [Serratia odorifera 4Rx13]
 gi|270041503|gb|EFA14601.1| 30S ribosomal protein S3 [Serratia odorifera 4Rx13]
          Length = 232

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A   E+   L  D K+R++L   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWYANTKEFADNLDSDFKVRQFLIKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|167465559|ref|ZP_02330648.1| 30S ribosomal protein S3 [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381120|ref|ZP_08055123.1| 30S ribosomal protein S3-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
 gi|321154696|gb|EFX46967.1| 30S ribosomal protein S3-like protein [Paenibacillus larvae subsp.
           larvae B-3650]
          Length = 220

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 109/208 (52%), Positives = 154/208 (74%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P+  R+GV   W S+W+A   ++GALL ED+KIRE+L+  LK + V+ I IER 
Sbjct: 1   MGQKVSPVGLRIGVIRDWESKWYA-DKDFGALLIEDVKIREFLKNKLKDSAVSHIDIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +++A+PG++IG+ G+++E IR  ++ MT  +IH++++EV  PE++A L+A+SI
Sbjct: 60  ANRVNVTIHTAKPGMVIGRGGSEVEAIRAHIARMTGKKIHINISEVKNPELDAILVAESI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMK+A+Q  MR GA G+KV  SGRL GA+++R+E Y EG VPL TLRA
Sbjct: 120 AQQLERRVSFRRAMKQAIQRTMRAGAKGIKVTTSGRLGGADIARSEGYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDYGTA A T YG  G+KV++  R EV
Sbjct: 180 DIDYGTAEAHTTYGRTGVKVWI-YRGEV 206


>gi|304399285|ref|ZP_07381151.1| ribosomal protein S3 [Pantoea sp. aB]
 gi|308188351|ref|YP_003932482.1| 30S ribosomal protein S3 [Pantoea vagans C9-1]
 gi|304353211|gb|EFM17592.1| ribosomal protein S3 [Pantoea sp. aB]
 gi|308058861|gb|ADO11033.1| 30S ribosomal protein S3 [Pantoea vagans C9-1]
          Length = 232

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA  +E+   L  D K+R++L   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTNEFADNLDSDFKVRQFLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRTVVAKIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|190151120|ref|YP_001969645.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|189916251|gb|ACE62503.1| 30S ribosomal protein S3 [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
          Length = 235

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 145/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTQDFADNLDGDFKVRKFLNKELANASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  +S +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVSQIAGVPAQINIAEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEISGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A T YG  G+KV++
Sbjct: 181 DIDYNTAEAHTTYGVIGVKVWI 202


>gi|317178396|dbj|BAJ56184.1| 30S ribosomal protein S3 [Helicobacter pylori F30]
          Length = 234

 Score =  231 bits (590), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N  W SRWF       + + ED KIR++L+  L  AGV++I+IER 
Sbjct: 1   MGQKVNPVGLRLGINRNWTSRWFPSARTAPSNIDEDNKIRKFLKKELYYAGVSEIVIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPGLIIGKKG DIEK+++ L  +   E+ +++ EV +P+ +A L A+S+
Sbjct: 61  AKKLRVTVVAARPGLIIGKKGVDIEKVKEGLKTLIKKEVSINIKEVKRPQADAQLAAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q+A++ GA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 ATQLEKRVAFRRAMKKVMQAALKSGAKGIKVRVSGRLAGAEIARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAMTVYGIIGVKVWI 202


>gi|115376080|ref|ZP_01463325.1| ribosomal protein S3 [Stigmatella aurantiaca DW4/3-1]
 gi|310821000|ref|YP_003953358.1| 30S ribosomal protein S3 [Stigmatella aurantiaca DW4/3-1]
 gi|115366895|gb|EAU65885.1| ribosomal protein S3 [Stigmatella aurantiaca DW4/3-1]
 gi|309394072|gb|ADO71531.1| 30S ribosomal protein S3 [Stigmatella aurantiaca DW4/3-1]
          Length = 220

 Score =  231 bits (589), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 111/221 (50%), Positives = 154/221 (69%), Gaps = 1/221 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI FRLGV  TW+S+WF     Y   LHED++IRE+++  L  AGV+K+ IER 
Sbjct: 1   MGQKVHPIGFRLGVIKTWDSKWFEH-KNYAQWLHEDIRIREFVKKSLNHAGVSKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ V++ARPG++IGK+G  IE ++K L   T +E+ L++ EV K E +A L+A++I
Sbjct: 60  ANKVKVNVHTARPGIVIGKRGAGIETVKKDLQQFTKNEVFLNIVEVRKAETDAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK+A+Q+AM+FGA G++V  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 120 ATQLERRIAFRRAMKKALQTAMKFGAKGIRVACSGRLGGAEMARYEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDYG A A+T YG  G KV++   + +       P   +R
Sbjct: 180 DIDYGFAEAKTTYGKIGCKVWICRGEVLPGKGGQAPLPSNR 220


>gi|219666496|ref|YP_002456931.1| 30S ribosomal protein S3 [Desulfitobacterium hafniense DCB-2]
 gi|254764528|sp|B8G1X2|RS3_DESHD RecName: Full=30S ribosomal protein S3
 gi|219536756|gb|ACL18495.1| ribosomal protein S3 [Desulfitobacterium hafniense DCB-2]
          Length = 219

 Score =  231 bits (589), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 148/202 (73%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   R+G+   W  RWFA    Y  LLHEDLK+R++++  L+QAGV K+ IER 
Sbjct: 1   MGQKVNPKGLRVGIIRDWEGRWFA-DKNYLELLHEDLKVRKFVKTKLQQAGVPKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ +Y+A+PG++IG+ GT++E +RK+L  MT  ++ +++ EV KPE++A L+A+S+
Sbjct: 60  ANRVKVSIYAAKPGIVIGRGGTEVENLRKQLEAMTGKQVAVNIVEVKKPELDAQLVAESV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV FRRAMK+ VQ  MR G  G+K+  SGRL GAE++RTE Y EG+VPL TLRA
Sbjct: 120 AQQLEKRVSFRRAMKQTVQRTMRQGGQGIKISCSGRLGGAEIARTEWYSEGKVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 180 DIDYGFAEANTTYGKIGVKVWI 201


>gi|88801213|ref|ZP_01116754.1| ribosomal protein S3 [Reinekea sp. MED297]
 gi|88776051|gb|EAR07285.1| ribosomal protein S3 [Reinekea sp. MED297]
          Length = 228

 Score =  231 bits (589), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 152/202 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+    NS W+A    Y   L  D+++R YL+  L++A V+KI+IER 
Sbjct: 1   MGQKVHPTGIRLGIVKDHNSVWYAGSDTYSEKLLNDIEVRAYLEKKLEKASVSKIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N +I +++ARPG++IGKKG D+E +R++L+ M    +H+++ E+ KP+++  L+AQSI
Sbjct: 61  AQNAKITIHTARPGIVIGKKGEDVELLRQELTQMMGIPVHINIEEIRKPDLDGKLVAQSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRA+Q+AMR GA+G++V  SGRL GAE++R+E YLEGRVPL TLRA
Sbjct: 121 AGQLERRVMFRRAMKRAMQNAMRGGAEGIRVQVSGRLGGAEIARSEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A T YG  G+KV++
Sbjct: 181 DIDYATAEANTTYGIIGVKVWI 202


>gi|37912955|gb|AAR05287.1| ribosomal protein S3 [uncultured marine gamma proteobacterium
           EB000-45B06]
 gi|40063183|gb|AAR38020.1| ribosomal protein S3 [uncultured marine bacterium 562]
          Length = 219

 Score =  231 bits (589), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 106/211 (50%), Positives = 157/211 (74%), Gaps = 1/211 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP  FRLG++   N+ W+A+G ++   L +DLK+REY + +LK + ++KI +ER+
Sbjct: 1   MGQKVNPTGFRLGISKKQNANWYAKGKDFSTNLVQDLKVREYFKKNLKNSSISKIELERS 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N  + +Y++RPG+IIGK+G +I+ ++K +  +      +++ EV KP+++A ++A+ +
Sbjct: 61  AENFVVSIYTSRPGIIIGKRGEEIDNLKKAVQKIVKKPAQINIKEVRKPDLDAQILAEGV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKR VQSA+R  A GV+V  SGRLNGAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRTVQSALRQSAKGVRVEVSGRLNGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDS 211
            IDYGTA A T YG  G+KV+V  + E+++ 
Sbjct: 181 DIDYGTAEALTTYGIIGVKVWV-FKGEITED 210


>gi|56480312|ref|NP_709102.2| 30S ribosomal protein S3 [Shigella flexneri 2a str. 301]
 gi|27734495|sp|P59184|RS3_SHIFL RecName: Full=30S ribosomal protein S3
 gi|56383863|gb|AAN44809.2| 30S ribosomal subunit protein S3 [Shigella flexneri 2a str. 301]
          Length = 233

 Score =  231 bits (589), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++    RLG+   WNS WFA   E+   L  D K+R+YL   L +A V++I+IER 
Sbjct: 1   MGQKVHRNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|37528537|ref|NP_931882.1| 30S ribosomal protein S3 [Photorhabdus luminescens subsp. laumondii
           TTO1]
 gi|61215674|sp|Q7MYF7|RS3_PHOLL RecName: Full=30S ribosomal protein S3
 gi|36787975|emb|CAE17092.1| 30S ribosomal protein S3 [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 233

 Score =  231 bits (589), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 109/219 (49%), Positives = 155/219 (70%), Gaps = 1/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A   E+   L  D K+R+YL+  L +A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWYANTKEFADNLDSDFKVRQYLKKELAKASISRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++ +      ++++EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKTVAEIAGVPAQINISEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERR++FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 TSQLERRIMFRRAMKRAVQNAMRQGAKGIKVEVSGRLGGAEIARPEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDY T+ A T YG  G+KV++  + E+    + +  AE
Sbjct: 181 DIDYNTSEAHTTYGVLGVKVWI-FKGEILGGMAAVEQAE 218


>gi|24371835|ref|NP_715877.1| 30S ribosomal protein S3 [Shewanella oneidensis MR-1]
 gi|113968550|ref|YP_732343.1| 30S ribosomal protein S3 [Shewanella sp. MR-4]
 gi|114045713|ref|YP_736263.1| 30S ribosomal protein S3 [Shewanella sp. MR-7]
 gi|117918663|ref|YP_867855.1| 30S ribosomal protein S3 [Shewanella sp. ANA-3]
 gi|27734494|sp|P59183|RS3_SHEON RecName: Full=30S ribosomal protein S3
 gi|123130850|sp|Q0HNT1|RS3_SHESM RecName: Full=30S ribosomal protein S3
 gi|123326998|sp|Q0I099|RS3_SHESR RecName: Full=30S ribosomal protein S3
 gi|152060905|sp|A0KRN0|RS3_SHESA RecName: Full=30S ribosomal protein S3
 gi|24345648|gb|AAN53322.1|AE015473_9 ribosomal protein S3 [Shewanella oneidensis MR-1]
 gi|113883234|gb|ABI37286.1| SSU ribosomal protein S3P [Shewanella sp. MR-4]
 gi|113887155|gb|ABI41206.1| SSU ribosomal protein S3P [Shewanella sp. MR-7]
 gi|117610995|gb|ABK46449.1| SSU ribosomal protein S3P [Shewanella sp. ANA-3]
          Length = 230

 Score =  231 bits (589), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 111/210 (52%), Positives = 153/210 (72%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W S W+A  S+Y   L+ D ++R+YL   L+ A V+KI+IER 
Sbjct: 1   MGQKVHPNGIRLGITKPWISTWYADKSDYANNLNSDWEVRKYLADKLQAASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+E +R  +S +  +   +++ E+ KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEVLRAAVSKLAGTPAQINIAEIRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRIGAQGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            IDY T+ + T YG  GIKV++  + EV D
Sbjct: 181 DIDYSTSESHTQYGVIGIKVWI-FKGEVLD 209


>gi|59710849|ref|YP_203625.1| 30S ribosomal protein S3 [Vibrio fischeri ES114]
 gi|197334087|ref|YP_002155002.1| ribosomal protein S3 [Vibrio fischeri MJ11]
 gi|75507109|sp|Q5E8A9|RS3_VIBF1 RecName: Full=30S ribosomal protein S3
 gi|226697774|sp|B5FG15|RS3_VIBFM RecName: Full=30S ribosomal protein S3
 gi|59478950|gb|AAW84737.1| 30S ribosomal subunit protein S3 [Vibrio fischeri ES114]
 gi|197315577|gb|ACH65024.1| ribosomal protein S3 [Vibrio fischeri MJ11]
          Length = 232

 Score =  231 bits (588), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   E+   L  D K+R+YL   LK+A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNATWFASSQEFADNLDGDFKVRQYLTKELKKASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++  L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRAGVAKIAGVPAQINIAEVRKPELDGQLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYATSSAHTQYGVIGVKVWI 202


>gi|268316414|ref|YP_003290133.1| 30S ribosomal protein S3 [Rhodothermus marinus DSM 4252]
 gi|262333948|gb|ACY47745.1| ribosomal protein S3 [Rhodothermus marinus DSM 4252]
          Length = 249

 Score =  231 bits (588), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 109/212 (51%), Positives = 158/212 (74%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK +PI FRLGV   W S W+A   +    L ED +IR YLQ  LK+AG+++++IERT
Sbjct: 1   MGQKTHPIGFRLGVIRGWFSSWYAE-KDLPEKLIEDEEIRRYLQARLKRAGLSRVVIERT 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K   + ++++RPG++IG+ G ++EK+R++L  +T  EI ++++E+ +PE++A+L+AQ+I
Sbjct: 60  PKRVILTLHTSRPGVVIGRGGQEVEKLREELQKLTGKEIQINISEIKRPELDASLVAQNI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE RV FRRAMK+A+ +AMR GA G+++  SGRL GAE+SRTE YLEGRVPL TLRA
Sbjct: 120 AQQLEGRVSFRRAMKQAITAAMRMGAQGIRIKVSGRLGGAEMSRTEQYLEGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
           +IDY  A A T YG+ G+KV++ L + +   D
Sbjct: 180 NIDYAQATAYTIYGTIGVKVWIFLGEIIGKPD 211


>gi|187932137|ref|YP_001892122.1| 30S ribosomal protein S3 [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|226697715|sp|B2SDX9|RS3_FRATM RecName: Full=30S ribosomal protein S3
 gi|187713046|gb|ACD31343.1| 30S ribosomal protein S3 [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 223

 Score =  231 bits (588), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 149/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG    W S W+A  S Y   L+ED+K+RE+L   L  A V+KI IER 
Sbjct: 1   MGQKVNPNGIRLGYIRDWRSTWYADSSRYATKLNEDIKVREFLHKKLAAAAVSKIQIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N +I +++ARPG++IGKKG D+EK+R ++  +    + +++ EV KPEI+A L+A+S+
Sbjct: 61  AQNAKITIHTARPGIVIGKKGDDVEKLRAEVHKLMGIPVQINIEEVRKPEIDAKLVAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV+FRRAMK+A+Q+AM+ GA G+K++ SGRL GAE++R+E   +GRVPLQT RA
Sbjct: 121 AQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVSGRLGGAEIARSEWARDGRVPLQTFRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            +DY TA A T YG  G+KV++
Sbjct: 181 DVDYATAEALTTYGVIGVKVWI 202


>gi|317485816|ref|ZP_07944680.1| ribosomal protein S3 [Bilophila wadsworthia 3_1_6]
 gi|316922922|gb|EFV44144.1| ribosomal protein S3 [Bilophila wadsworthia 3_1_6]
          Length = 213

 Score =  231 bits (588), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 111/212 (52%), Positives = 153/212 (72%), Gaps = 2/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG N  W SRWF++  +Y A ++ED ++R+Y++  L  AG++KI IER 
Sbjct: 1   MGQKVHPYGFRLGYNKNWQSRWFSK-KDYPAFVYEDHEVRKYVKKLLYSAGISKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+I+ +ARPG++IG+KG +IEK+R  L      E  L VNE+ +PE+++ L+A++I
Sbjct: 60  GGKIRLILSTARPGIVIGRKGVEIEKLRNDLRAKFGREFSLEVNEIRRPEVDSQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKR V  A +FGA+G+KV  SGRL GAE++RTE Y +GRVPLQTLRA
Sbjct: 120 AQQLERRVAFRRAMKRTVTMARKFGAEGIKVTCSGRLAGAEIARTEWYRDGRVPLQTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYG A A T YG  G+K ++  + E+ D +
Sbjct: 180 DIDYGFAEARTTYGIIGVKAWI-YKGEILDKE 210


>gi|260914674|ref|ZP_05921140.1| 30S ribosomal protein S3 [Pasteurella dagmatis ATCC 43325]
 gi|260631273|gb|EEX49458.1| 30S ribosomal protein S3 [Pasteurella dagmatis ATCC 43325]
          Length = 235

 Score =  231 bits (588), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 113/225 (50%), Positives = 154/225 (68%), Gaps = 1/225 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W+S WFA   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVHPHGIRLGIVKPWSSTWFANTQDFADNLDGDFKVRKFLNKELANASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAAIAGVPAQINIAEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDY TA A T YG  GIKV++  + E+    + I   E +  EK
Sbjct: 181 DIDYNTAEAHTTYGVIGIKVWI-FKGEILGGMAAIAQPEQQPAEK 224


>gi|258543827|ref|ZP_05704061.1| 30S ribosomal protein S3 [Cardiobacterium hominis ATCC 15826]
 gi|258520916|gb|EEV89775.1| 30S ribosomal protein S3 [Cardiobacterium hominis ATCC 15826]
          Length = 245

 Score =  231 bits (588), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 150/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI FRLGV+  W S+W+A G +Y   L +D ++RE+++  L  A V++I IER 
Sbjct: 6   MGQKVHPIGFRLGVSKDWVSKWYAEGKDYANFLEKDFEVREFIRKKLAHASVSQIQIERP 65

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I +++ARPG++IG+KG DIE +++++S++      +++ E+ +PE++A L+A  I
Sbjct: 66  RNGAQITIFTARPGIVIGRKGEDIEVLKQEISSIMGVPTSVNIEEIRRPELDAYLVADGI 125

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLERRV+FRRAMKR+V S MR GA G+KV  +GRLNGAE++RTE Y EGRVPL TLRA
Sbjct: 126 AKQLERRVMFRRAMKRSVASTMRLGAAGIKVSIAGRLNGAEIARTEWYREGRVPLHTLRA 185

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 186 DIDYGFAEAHTTYGVIGVKVWI 207


>gi|219871736|ref|YP_002476111.1| 30S ribosomal protein S3 [Haemophilus parasuis SH0165]
 gi|219691940|gb|ACL33163.1| 30S ribosomal protein S3 [Haemophilus parasuis SH0165]
          Length = 234

 Score =  231 bits (588), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W+S WFA   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVHPHGIRLGIVKPWSSTWFANTQDFADNLEGDFKVRQFLNKELANASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  +S +      ++++EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVSKIAGVPAQINISEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 AAQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A T YG  G+KV++
Sbjct: 181 DIDYNTAEAHTTYGVIGVKVWI 202


>gi|218290000|ref|ZP_03494177.1| ribosomal protein S3 [Alicyclobacillus acidocaldarius LAA1]
 gi|218239985|gb|EED07172.1| ribosomal protein S3 [Alicyclobacillus acidocaldarius LAA1]
          Length = 226

 Score =  231 bits (588), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 152/217 (70%), Gaps = 1/217 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  R+G+   W ++W+A   +Y  LLHEDLKIR Y+   LK A +  + IER 
Sbjct: 1   MGQKVNPIGLRIGIIRDWEAKWYANKKDYQVLLHEDLKIRNYVMQRLKDAAIGSVEIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +++A+PG++IGK G +++ +R +L+ +T   +H+S++E+ +P++ A L+A+SI
Sbjct: 61  ANRINVTIHTAKPGMVIGKGGQEVDALRNELNKLTGKRVHISISEIKQPDLCAKLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMK+A+Q +MR GA GV+V  SGRL GAE++RTE Y+EG VPLQTLRA
Sbjct: 121 AQQLERRVAFRRAMKQAIQRSMRAGAKGVRVQVSGRLGGAEIARTEGYVEGTVPLQTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPA 217
            IDY  A A T YG  G+KV++  R EV      + A
Sbjct: 181 DIDYALAEAHTTYGRIGVKVWI-YRGEVLPKRKNVQA 216


>gi|109946765|ref|YP_663993.1| 30S ribosomal protein S3 [Helicobacter acinonychis str. Sheeba]
 gi|123362793|sp|Q17ZD2|RS3_HELAH RecName: Full=30S ribosomal protein S3
 gi|109713986|emb|CAJ98994.1| 30S ribosomal protein S3 [Helicobacter acinonychis str. Sheeba]
          Length = 234

 Score =  231 bits (588), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N  W SRWF       + + ED KIR++L+  L  AGV++I+IER 
Sbjct: 1   MGQKVNPVGLRLGINRNWTSRWFPSARTAPSNIDEDNKIRKFLKKELYYAGVSQIVIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPGLIIGKKG DIEK+++ L  +   E+ +++ EV +P+ +A L A+++
Sbjct: 61  AKKLRVTVVAARPGLIIGKKGVDIEKVKEGLKTLIKKEVSINIKEVKRPQADAQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q+A++ GA GVKV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 ATQLEKRVAFRRAMKKVMQAALKSGAKGVKVRVSGRLAGAEIARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAMTVYGIIGVKVWI 202


>gi|89255676|ref|YP_513037.1| 30S ribosomal protein S3 [Francisella tularensis subsp. holarctica
           LVS]
 gi|115314177|ref|YP_762900.1| 30S ribosomal protein S3 [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134302579|ref|YP_001122550.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156501626|ref|YP_001427691.1| 30S ribosomal protein S3 [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167009883|ref|ZP_02274814.1| ribosomal protein S3 [Francisella tularensis subsp. holarctica
           FSC200]
 gi|254368628|ref|ZP_04984643.1| hypothetical protein FTAG_01721 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|290953206|ref|ZP_06557827.1| 30S ribosomal protein S3 [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295313574|ref|ZP_06804163.1| 30S ribosomal protein S3 [Francisella tularensis subsp. holarctica
           URFT1]
 gi|122325782|sp|Q0BNS1|RS3_FRATO RecName: Full=30S ribosomal protein S3
 gi|123094541|sp|Q2A5G4|RS3_FRATH RecName: Full=30S ribosomal protein S3
 gi|152060862|sp|A4IZS8|RS3_FRATW RecName: Full=30S ribosomal protein S3
 gi|189045009|sp|A7N9T2|RS3_FRATF RecName: Full=30S ribosomal protein S3
 gi|89143507|emb|CAJ78683.1| 30S ribosomal protein S3 [Francisella tularensis subsp. holarctica
           LVS]
 gi|115129076|gb|ABI82263.1| ribosomal protein S3 [Francisella tularensis subsp. holarctica
           OSU18]
 gi|134050356|gb|ABO47427.1| ribosomal protein S3 [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|156252229|gb|ABU60735.1| ribosomal protein S3 [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|157121536|gb|EDO65721.1| hypothetical protein FTAG_01721 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 223

 Score =  231 bits (588), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 149/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG    W S W+A  S Y   L+ED+K+RE+L   L  A V+KI IER 
Sbjct: 1   MGQKVNPNGIRLGYIRDWRSTWYADSSRYATKLNEDIKVREFLHKKLAAAAVSKIQIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N +I +++ARPG++IGKKG D+EK+R ++  +    + +++ EV KPEI+A L+A+S+
Sbjct: 61  AQNAKITIHTARPGIVIGKKGEDVEKLRAEVHKLMGIPVQINIEEVRKPEIDAKLVAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV+FRRAMK+A+Q+AM+ GA G+K++ SGRL GAE++R+E   +GRVPLQT RA
Sbjct: 121 AQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVSGRLGGAEIARSEWARDGRVPLQTFRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            +DY TA A T YG  G+KV++
Sbjct: 181 DVDYATAEALTTYGVIGVKVWI 202


>gi|118496858|ref|YP_897908.1| 30S ribosomal protein S3 [Francisella tularensis subsp. novicida
           U112]
 gi|152060861|sp|A0Q4I9|RS3_FRATN RecName: Full=30S ribosomal protein S3
 gi|118422764|gb|ABK89154.1| 30S ribosomal protein S3 [Francisella novicida U112]
 gi|328675413|gb|AEB28088.1| SSU ribosomal protein S3p (S3e) [Francisella cf. novicida 3523]
 gi|328676327|gb|AEB27197.1| SSU ribosomal protein S3p (S3e) [Francisella cf. novicida Fx1]
          Length = 223

 Score =  231 bits (588), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 149/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG    W S W+A  S Y   L+ED+K+RE+L   L  A V+KI IER 
Sbjct: 1   MGQKVNPNGIRLGYIRDWRSTWYADSSSYATKLNEDIKVREFLHKKLAAAAVSKIQIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N +I +++ARPG++IGKKG D+EK+R ++  +    + +++ EV KPEI+A L+A+S+
Sbjct: 61  AQNAKITIHTARPGIVIGKKGEDVEKLRAEVHKLMGIPVQINIEEVRKPEIDAKLVAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV+FRRAMK+A+Q+AM+ GA G+K++ SGRL GAE++R+E   +GRVPLQT RA
Sbjct: 121 AQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVSGRLGGAEIARSEWARDGRVPLQTFRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            +DY TA A T YG  G+KV++
Sbjct: 181 DVDYATAEALTTYGVIGVKVWI 202


>gi|222823109|ref|YP_002574682.1| 30S ribosomal protein S3 [Campylobacter lari RM2100]
 gi|254764519|sp|B9KEE6|RS3_CAMLR RecName: Full=30S ribosomal protein S3
 gi|222538330|gb|ACM63431.1| 30S ribosomal protein S3 [Campylobacter lari RM2100]
          Length = 233

 Score =  231 bits (588), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 113/228 (49%), Positives = 156/228 (68%), Gaps = 8/228 (3%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF   +     + ED KIR +L+  L  AG+++IL+ERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPTKANMAENIGEDYKIRTFLKRKLYYAGISQILVERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPG+IIGKKG+D++ +RK+L N+   E+++++ E  K   +A L A+S+
Sbjct: 61  AKKLRVTVVAARPGIIIGKKGSDVDVLRKELQNLIGKEVNINIKEERKAGASAQLAAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+R+ FRRAMK+ +Q A + GA G+KV  SGRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 ATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV-------SDSDSTIPAAEHR 221
            IDYG A A T YG+ GIKV++  + EV         ++ + PA + R
Sbjct: 181 KIDYGFAEAHTTYGNIGIKVWI-FKGEVLQKGVQPEKTEESAPAKKPR 227


>gi|308272973|emb|CBX29577.1| 30S ribosomal protein S3 [uncultured Desulfobacterium sp.]
          Length = 217

 Score =  230 bits (587), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 114/212 (53%), Positives = 153/212 (72%), Gaps = 2/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+  TW SRW+A G  Y   + ED  IR++L+  L  AG+++I IER+
Sbjct: 1   MGQKVNPIGLRLGIIKTWESRWYA-GKNYAEYILEDSNIRKFLKKKLNSAGISRIEIERS 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +Y++RPG+IIGKKG++I +++++L    + E+ + + EV KPEI+A LIA+S+
Sbjct: 60  SKRVRLRIYASRPGIIIGKKGSEILQLKQELEKQISHEVLIDIQEVRKPEIDAQLIAESV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           +QQ+ +RV FRRAMKR V SAMRFGA GVK+I SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 120 SQQIIKRVAFRRAMKRGVASAMRFGAMGVKIICSGRLGGAEMARREWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYG   A T YG  GIKV+V  + E+   D
Sbjct: 180 DIDYGFTEALTTYGIIGIKVFV-FKGEILRKD 210


>gi|213158829|ref|YP_002320827.1| ribosomal protein S3 [Acinetobacter baumannii AB0057]
 gi|226697655|sp|B7IA33|RS3_ACIB5 RecName: Full=30S ribosomal protein S3
 gi|213057989|gb|ACJ42891.1| ribosomal protein S3 [Acinetobacter baumannii AB0057]
          Length = 250

 Score =  230 bits (587), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 110/208 (52%), Positives = 154/208 (74%), Gaps = 1/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLGV    N+ W+A   +Y   L +DL++RE+L  +LK A V+ ILIER 
Sbjct: 1   MGQKVHPIGIRLGVVKRHNANWYANPKQYAEYLLKDLQVREFLTKNLKNAMVSNILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ + +ARPG++IGKKG DIEK++++L+N+      +S+NE+ +P+++A L+A++I
Sbjct: 61  SGAAKVTISTARPGIVIGKKGEDIEKLQRELTNIMGVPAQVSINEIDRPDLDARLVAEAI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV+FRRAMKRAVQ+ MR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLEKRVMFRRAMKRAVQNTMRAGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T  AET YG+ G+KV++  R E+
Sbjct: 181 DIDYATMRAETTYGTIGVKVWI-FRGEI 207


>gi|207091942|ref|ZP_03239729.1| 30S ribosomal protein S3 [Helicobacter pylori HPKX_438_AG0C1]
          Length = 234

 Score =  230 bits (587), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N  W SRWF       + + ED KIR++L+  L  AGV++I+IER 
Sbjct: 1   MGQKVNPVGLRLGINRNWTSRWFPSARTAPSSIDEDNKIRKFLKKELYYAGVSEIVIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPGLIIGKKG DIEK+++ L  +   E+ +++ EV +P+ +A L A+++
Sbjct: 61  AKKLRVTVVAARPGLIIGKKGVDIEKVKEGLKTLIKKEVSINIKEVKRPQADAQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q+A++ GA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 ATQLEKRVAFRRAMKKVMQAALKSGAKGIKVRVSGRLAGAEIARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAMTVYGIIGVKVWI 202


>gi|161510956|ref|YP_089234.2| 30S ribosomal protein S3 [Mannheimia succiniciproducens MBEL55E]
 gi|61215475|sp|Q65QW1|RS3_MANSM RecName: Full=30S ribosomal protein S3
          Length = 235

 Score =  230 bits (587), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG+   W+S WFA   ++ + L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVNPHGIRLGIVKPWSSTWFANTQDFASNLDGDFKVRKFLNKELANASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAKIAGVPAQINIAEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|295401914|ref|ZP_06811877.1| ribosomal protein S3 [Geobacillus thermoglucosidasius C56-YS93]
 gi|312109267|ref|YP_003987583.1| ribosomal protein S3 [Geobacillus sp. Y4.1MC1]
 gi|294976044|gb|EFG51659.1| ribosomal protein S3 [Geobacillus thermoglucosidasius C56-YS93]
 gi|311214368|gb|ADP72972.1| ribosomal protein S3 [Geobacillus sp. Y4.1MC1]
          Length = 218

 Score =  230 bits (587), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 150/202 (74%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  R+G+   W+SRW+A   +Y  LLHEDLKIREY+   L+ A V++I IER 
Sbjct: 1   MGQKVNPIGLRIGIIRDWDSRWYAE-KDYADLLHEDLKIREYINKRLQDAAVSRIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++A+PG++IGK G+++E +RK L+ +T   +H+++ E+ KP+++A L+A++I
Sbjct: 60  ANRVNITIHTAKPGMVIGKGGSEVEALRKALTQLTGKRVHINIVEIKKPDLDAKLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRA K+A+Q AMR GA G+K + SGRL GA+++R+E Y EG VPL TLRA
Sbjct: 120 ARQLENRVSFRRAQKQAIQRAMRAGAKGIKTMVSGRLGGADIARSEHYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A+T YG  G+KV++
Sbjct: 180 DIDYATAEADTTYGKIGVKVWI 201


>gi|258512664|ref|YP_003186098.1| 30S ribosomal protein S3 [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257479390|gb|ACV59709.1| ribosomal protein S3 [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 226

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/208 (50%), Positives = 150/208 (72%), Gaps = 1/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  R+G+   W ++W+A   +Y  LLHEDLKIR Y+   LK A +  + IER 
Sbjct: 1   MGQKVNPIGLRIGIIRDWEAKWYANKKDYQELLHEDLKIRNYVMQRLKDAAIGSVEIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +++A+PG++IGK G +++ +R +L+ +T   +H+S++E+ +P++ A L+A+SI
Sbjct: 61  ANRINVTIHTAKPGMVIGKGGQEVDALRNELNKLTGKRVHISISEIKQPDLCAKLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMK+A+Q +MR GA GV+V  SGRL GAE++RTE Y+EG VPLQTLRA
Sbjct: 121 AQQLERRVAFRRAMKQAIQRSMRAGAKGVRVQVSGRLGGAEIARTEGYVEGTVPLQTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY  A A T YG  G+KV++  R EV
Sbjct: 181 DIDYALAEAHTTYGRIGVKVWI-YRGEV 207


>gi|322831078|ref|YP_004211105.1| ribosomal protein S3 [Rahnella sp. Y9602]
 gi|321166279|gb|ADW71978.1| ribosomal protein S3 [Rahnella sp. Y9602]
          Length = 232

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A   ++   L  D K+R++L   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWYANTKDFADNLDGDFKVRQFLTKELAKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|223038386|ref|ZP_03608680.1| ribosomal protein S3 [Campylobacter rectus RM3267]
 gi|222880243|gb|EEF15330.1| ribosomal protein S3 [Campylobacter rectus RM3267]
          Length = 233

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF         + ED KIR +L+  L  AGV++ILIERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPAKGNLAENIGEDYKIRAFLKKKLYYAGVSQILIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPG+IIGKKG+D+EK+++ +  + N E+++++ E  K + +A L A+++
Sbjct: 61  AKKIRVTVVAARPGIIIGKKGSDVEKLKEDIQKLINKEVNVNIKEERKAQASAQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q A + GA G+K+  +GRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 AMQLEKRVAFRRAMKKVIQGAQKSGAKGIKISVAGRLGGAEIARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG+ GIKV++
Sbjct: 181 KIDYGVAEAHTTYGNIGIKVWI 202


>gi|56418647|ref|YP_145965.1| 30S ribosomal protein S3 [Geobacillus kaustophilus HTA426]
 gi|261417613|ref|YP_003251295.1| 30S ribosomal protein S3 [Geobacillus sp. Y412MC61]
 gi|297528488|ref|YP_003669763.1| ribosomal protein S3 [Geobacillus sp. C56-T3]
 gi|319765271|ref|YP_004130772.1| ribosomal protein S3 [Geobacillus sp. Y412MC52]
 gi|61215363|sp|Q5L417|RS3_GEOKA RecName: Full=30S ribosomal protein S3
 gi|56378489|dbj|BAD74397.1| 30S ribosomal protein S3 (BS2) [Geobacillus kaustophilus HTA426]
 gi|261374070|gb|ACX76813.1| ribosomal protein S3 [Geobacillus sp. Y412MC61]
 gi|297251740|gb|ADI25186.1| ribosomal protein S3 [Geobacillus sp. C56-T3]
 gi|317110137|gb|ADU92629.1| ribosomal protein S3 [Geobacillus sp. Y412MC52]
          Length = 218

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 150/202 (74%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  R+G+   W SRW+A   +Y  LLHEDLKIREY+   L+ A V+++ IER 
Sbjct: 1   MGQKVNPIGLRIGIIRDWESRWYAE-KDYADLLHEDLKIREYISKRLQDAAVSRVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +++A+PG++IGK G+++E +RK L+ +T   +H+++ E+ KP+++A L+A++I
Sbjct: 60  ANRVNVTIHTAKPGMVIGKGGSEVEALRKALAQLTGKRVHINIVEIKKPDLDARLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRA K+A+Q AMR GA G+K + SGRL GA+++R+E Y EG VPL TLRA
Sbjct: 120 ARQLENRVSFRRAQKQAIQRAMRAGAKGIKTMVSGRLGGADIARSEHYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYGTA A+T YG  G+KV++
Sbjct: 180 DIDYGTAEADTTYGKIGVKVWI 201


>gi|303246999|ref|ZP_07333275.1| ribosomal protein S3 [Desulfovibrio fructosovorans JJ]
 gi|302491706|gb|EFL51589.1| ribosomal protein S3 [Desulfovibrio fructosovorans JJ]
          Length = 213

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 110/212 (51%), Positives = 157/212 (74%), Gaps = 2/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG N  W SRWF++  +Y A + ED KIR++++ +L  AG++KI IER 
Sbjct: 1   MGQKVHPYGFRLGYNKNWLSRWFSK-KDYPAFVFEDNKIRKFVKKNLYHAGISKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+I+++ARPG++IG+KGT+IEK+R  L      E  + VNE+ +PEI++ L+A++I
Sbjct: 60  GGKIRLIIHTARPGIVIGRKGTEIEKVRGDLKQRFGREFTVEVNEIRRPEIDSQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMKR V  + +FGA+G+KV  +GRL GAE++R+E Y +GRVPLQTLRA
Sbjct: 120 ALQLERRVAFRRAMKRTVGLSRKFGAEGIKVSCAGRLAGAEIARSEWYRDGRVPLQTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYG A+A+T YG  G+KV++  + E+ D +
Sbjct: 180 DIDYGYAIAKTTYGVIGVKVWI-FKGEILDHE 210


>gi|28198359|ref|NP_778673.1| 30S ribosomal protein S3 [Xylella fastidiosa Temecula1]
 gi|182681000|ref|YP_001829160.1| 30S ribosomal protein S3 [Xylella fastidiosa M23]
 gi|32129995|sp|Q87E76|RS3_XYLFT RecName: Full=30S ribosomal protein S3
 gi|226697777|sp|B2I8H5|RS3_XYLF2 RecName: Full=30S ribosomal protein S3
 gi|28056429|gb|AAO28322.1| 30S ribosomal protein S3 [Xylella fastidiosa Temecula1]
 gi|182631110|gb|ACB91886.1| ribosomal protein S3 [Xylella fastidiosa M23]
 gi|307579469|gb|ADN63438.1| 30S ribosomal protein S3 [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 239

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/200 (53%), Positives = 152/200 (76%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K++PI  RLG++  WNS+W+A  +E+   L  DLK+R+ L+  + QAG++KILIER 
Sbjct: 1   MGHKVHPIGIRLGISADWNSKWYANKAEFARYLAADLKVRQVLRKKMSQAGISKILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + ++ ARPG++IGK+G DIE +RK++S++    +H++V EV KPE++A L+A+S+
Sbjct: 61  SNTACVSMHVARPGVVIGKRGEDIEMLRKQVSDIMGVPVHINVIEVRKPELDAQLVAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKR+V +A+R GA G+K+  +GRLNGAE++R+E Y EGRVPLQTLRA
Sbjct: 121 AQQLERRIMFRRAMKRSVSNAIRLGALGIKISVAGRLNGAEIARSEWYREGRVPLQTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKV 200
            I YG + A T YG  G+KV
Sbjct: 181 DIGYGFSEAYTNYGVTGVKV 200


>gi|78776493|ref|YP_392808.1| 30S ribosomal protein S3 [Sulfurimonas denitrificans DSM 1251]
 gi|91207849|sp|Q30TV8|RS3_SULDN RecName: Full=30S ribosomal protein S3
 gi|78497033|gb|ABB43573.1| SSU ribosomal protein S3P [Sulfurimonas denitrificans DSM 1251]
          Length = 241

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 111/202 (54%), Positives = 144/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF       A L ED KIR YL+  L  AGV+ I+IERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPNFKTAAAYLGEDHKIRTYLKKELYYAGVSNIVIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ + +ARPG+IIGKKG+DIEK++  L  +    + +++ E  K +I++ L+A+++
Sbjct: 61  AKRLRVTIIAARPGIIIGKKGSDIEKLKDTLQALVGKPLSVNIKEEKKAQISSQLVAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK+ +Q+A R GA G+KV  SGRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 ATQLERRVAFRRAMKKVMQNAQRGGAKGIKVSVSGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAHTTYGCIGVKVWI 202


>gi|315587202|gb|ADU41583.1| 30S ribosomal protein S3 [Helicobacter pylori 35A]
          Length = 234

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N  W SRWF       + + ED KIR++L+  L  AGV++I+IER 
Sbjct: 1   MGQKVNPVGLRLGINRNWTSRWFPSTRTAPSNIDEDNKIRKFLKKELYYAGVSEIVIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPGLIIGKKG DIEK+++ L  +   E+ +++ EV  P+ ++ L A+++
Sbjct: 61  AKKLRVTVVAARPGLIIGKKGVDIEKVKEGLKTLIKKEVSINIKEVKHPQADSQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q+A++FGA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 ATQLEKRVAFRRAMKKVMQAALKFGAKGIKVRVSGRLAGAEIARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAMTVYGIIGVKVWI 202


>gi|45644699|gb|AAS73087.1| predicted ribosomal protein S3 [uncultured marine gamma
           proteobacterium EBAC20E09]
          Length = 219

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/211 (50%), Positives = 155/211 (73%), Gaps = 1/211 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP  FRLG++   N+ W+A+G ++   L +DLK+RE++   LK + ++K+ +ER 
Sbjct: 1   MGQKVNPNGFRLGISKKQNANWYAKGKDFSNNLIQDLKVREFINNRLKNSSISKVELERN 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +Y+ARPG+IIGK+G +IE ++KK+  +  S   +++ EV KP+++A ++A+ +
Sbjct: 61  ADTFIVNIYTARPGIIIGKRGEEIENLKKKIEKIVKSSTQINIKEVRKPDLDAKILAEGV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV+FRRAMKR VQSA+R  A GV++  SGRLNGAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLEKRVMFRRAMKRTVQSALRQSAKGVRIEVSGRLNGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDS 211
            IDYGTA A T YG  G+KV+V  R E+S+ 
Sbjct: 181 DIDYGTAEALTTYGIIGVKVWV-YRGEISED 210


>gi|239825699|ref|YP_002948323.1| 30S ribosomal protein S3 [Geobacillus sp. WCH70]
 gi|259495250|sp|C5D3S3|RS3_GEOSW RecName: Full=30S ribosomal protein S3
 gi|239805992|gb|ACS23057.1| ribosomal protein S3 [Geobacillus sp. WCH70]
          Length = 218

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 150/202 (74%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+G+   W+SRW+A   +Y  LLHEDLKIREY+   L+ A V++I IER 
Sbjct: 1   MGQKVNPVGLRIGIIRDWDSRWYAE-KDYADLLHEDLKIREYINKRLQDAAVSRIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++A+PG++IGK G+++E +RK L+ +T   +H+++ E+ KP+++A L+A++I
Sbjct: 60  ANRVNITIHTAKPGMVIGKGGSEVEALRKALTQLTGKRVHINIVEIKKPDLDAKLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRA K+A+Q AMR GA G+K + SGRL GA+++R+E Y EG VPL TLRA
Sbjct: 120 ARQLENRVSFRRAQKQAIQRAMRAGAKGIKTMVSGRLGGADIARSEHYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A+T YG  G+KV++
Sbjct: 180 DIDYATAEADTTYGKLGVKVWI 201


>gi|169794600|ref|YP_001712393.1| 30S ribosomal protein S3 [Acinetobacter baumannii AYE]
 gi|184159592|ref|YP_001847931.1| 30S ribosomal protein S3 [Acinetobacter baumannii ACICU]
 gi|215482189|ref|YP_002324371.1| ribosomal protein S3 [Acinetobacter baumannii AB307-0294]
 gi|239503228|ref|ZP_04662538.1| 30S ribosomal protein S3 [Acinetobacter baumannii AB900]
 gi|260557033|ref|ZP_05829250.1| ribosomal protein S3 [Acinetobacter baumannii ATCC 19606]
 gi|294839741|ref|ZP_06784424.1| 30S ribosomal protein S3 [Acinetobacter sp. 6013113]
 gi|294842659|ref|ZP_06787342.1| 30S ribosomal protein S3 [Acinetobacter sp. 6014059]
 gi|294860419|ref|ZP_06798188.1| 30S ribosomal protein S3 [Acinetobacter sp. 6013150]
 gi|301345016|ref|ZP_07225757.1| 30S ribosomal protein S3 [Acinetobacter baumannii AB056]
 gi|301512053|ref|ZP_07237290.1| 30S ribosomal protein S3 [Acinetobacter baumannii AB058]
 gi|301595190|ref|ZP_07240198.1| 30S ribosomal protein S3 [Acinetobacter baumannii AB059]
 gi|152060837|sp|A3M978|RS3_ACIBT RecName: Full=30S ribosomal protein S3
 gi|226697654|sp|B7GW08|RS3_ACIB3 RecName: Full=30S ribosomal protein S3
 gi|226697656|sp|B2HZA2|RS3_ACIBC RecName: Full=30S ribosomal protein S3
 gi|226697658|sp|B0V6X4|RS3_ACIBY RecName: Full=30S ribosomal protein S3
 gi|169147527|emb|CAM85388.1| 30S ribosomal protein S3 [Acinetobacter baumannii AYE]
 gi|183211186|gb|ACC58584.1| 30S ribosomal subunit protein S3 [Acinetobacter baumannii ACICU]
 gi|193078474|gb|ABO13472.2| 30S ribosomal protein S3 [Acinetobacter baumannii ATCC 17978]
 gi|213987863|gb|ACJ58162.1| ribosomal protein S3 [Acinetobacter baumannii AB307-0294]
 gi|260409639|gb|EEX02940.1| ribosomal protein S3 [Acinetobacter baumannii ATCC 19606]
 gi|322509502|gb|ADX04956.1| 30S ribosomal protein S3 [Acinetobacter baumannii 1656-2]
 gi|323519522|gb|ADX93903.1| 30S ribosomal protein S3 [Acinetobacter baumannii TCDC-AB0715]
          Length = 250

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 110/208 (52%), Positives = 153/208 (73%), Gaps = 1/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLGV    N+ W+A   +Y   L +DL++RE+L   LK A V+ ILIER 
Sbjct: 1   MGQKVHPIGIRLGVVKRHNANWYANPKQYAEYLLKDLQVREFLTKKLKNAMVSNILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ + +ARPG++IGKKG DIEK++++L+N+      +S+NE+ +P+++A L+A++I
Sbjct: 61  SGAAKVTISTARPGIVIGKKGEDIEKLQRELTNIMGVPAQVSINEIDRPDLDARLVAEAI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV+FRRAMKRAVQ+ MR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLEKRVMFRRAMKRAVQNTMRAGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T  AET YG+ G+KV++  R E+
Sbjct: 181 DIDYATMRAETTYGTIGVKVWI-FRGEI 207


>gi|153004779|ref|YP_001379104.1| ribosomal protein S3 [Anaeromyxobacter sp. Fw109-5]
 gi|189044983|sp|A7HBM4|RS3_ANADF RecName: Full=30S ribosomal protein S3
 gi|152028352|gb|ABS26120.1| ribosomal protein S3 [Anaeromyxobacter sp. Fw109-5]
          Length = 224

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 111/216 (51%), Positives = 157/216 (72%), Gaps = 1/216 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI FRLGV  +W+S+W+     Y   LHED+ +REY++  L QAG+++I IER 
Sbjct: 1   MGQKVHPIGFRLGVIRSWDSKWYEE-KNYAKWLHEDIHLREYVKEKLGQAGISRIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I V++ARPG++IGK+G  IE I+K+L   T++E++L+V EV K E +A L+A++I
Sbjct: 60  ANKVKINVHTARPGIVIGKRGAGIETIKKELQGKTDNEVYLNVVEVRKAETDAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK++VQ+A++FGA G++V  SGRL G+E++R E Y EGRVPL TLRA
Sbjct: 120 ATQLERRIAFRRAMKKSVQTALKFGAKGIRVACSGRLGGSEMARYEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIP 216
            IDYG A A+T YG  G KV++   + +  S S  P
Sbjct: 180 DIDYGFAEAKTTYGKIGCKVWIMRGEVLPQSASARP 215


>gi|307637984|gb|ADN80434.1| SSU ribosomal protein S3p:S3e [Helicobacter pylori 908]
          Length = 234

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N  W SRWF       + + ED KIR++L+  L  AGV++I+IER 
Sbjct: 1   MGQKVNPVGLRLGINRNWTSRWFPSARTAPSNIDEDNKIRKFLKKELYYAGVSEIVIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPGLIIGKKG DIEK+++ L  +   E+ +++ EV +P+ +A L A+++
Sbjct: 61  AKKLRVTVVAARPGLIIGKKGVDIEKVKEGLKTLIKKEVSINIKEVKRPQADAQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q+A++ GA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 ATQLEKRVAFRRAMKKVMQAALKSGAKGIKVRVSGRLAGAEIARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAMTVYGIIGVKVWI 202


>gi|108563683|ref|YP_627999.1| 30S ribosomal protein S3 [Helicobacter pylori HPAG1]
 gi|188528101|ref|YP_001910788.1| 30S ribosomal protein S3 [Helicobacter pylori Shi470]
 gi|208435210|ref|YP_002266876.1| ribosomal protein S3 [Helicobacter pylori G27]
 gi|217033630|ref|ZP_03439058.1| hypothetical protein HP9810_899g66 [Helicobacter pylori 98-10]
 gi|254779855|ref|YP_003057961.1| 30S ribosomal protein S3 [Helicobacter pylori B38]
 gi|308183423|ref|YP_003927550.1| 30S ribosomal protein S3 [Helicobacter pylori PeCan4]
 gi|308185065|ref|YP_003929198.1| 30S ribosomal protein S3 [Helicobacter pylori SJM180]
 gi|123073728|sp|Q1CRU7|RS3_HELPH RecName: Full=30S ribosomal protein S3
 gi|226697719|sp|B5Z8W1|RS3_HELPG RecName: Full=30S ribosomal protein S3
 gi|226697720|sp|B2UV76|RS3_HELPS RecName: Full=30S ribosomal protein S3
 gi|107837456|gb|ABF85325.1| ribosomal protein S3 [Helicobacter pylori HPAG1]
 gi|188144341|gb|ACD48758.1| 30S ribosomal protein S3 [Helicobacter pylori Shi470]
 gi|208433139|gb|ACI28010.1| ribosomal protein S3 [Helicobacter pylori G27]
 gi|216943976|gb|EEC23410.1| hypothetical protein HP9810_899g66 [Helicobacter pylori 98-10]
 gi|254001767|emb|CAX29998.1| 30S ribosomal subunit protein S3 [Helicobacter pylori B38]
 gi|261840028|gb|ACX99793.1| 30S ribosomal protein S3 [Helicobacter pylori 52]
 gi|308060985|gb|ADO02881.1| 30S ribosomal protein S3 [Helicobacter pylori SJM180]
 gi|308062598|gb|ADO04486.1| 30S ribosomal protein S3 [Helicobacter pylori Cuz20]
 gi|308065608|gb|ADO07500.1| 30S ribosomal protein S3 [Helicobacter pylori PeCan4]
 gi|317011513|gb|ADU85260.1| 30S ribosomal protein S3 [Helicobacter pylori SouthAfrica7]
 gi|317013100|gb|ADU83708.1| 30S ribosomal protein S3 [Helicobacter pylori Lithuania75]
 gi|325996589|gb|ADZ51994.1| 30S ribosomal protein S3 [Helicobacter pylori 2018]
 gi|325998179|gb|ADZ50387.1| 30S ribosomal protein S3 [Helicobacter pylori 2017]
          Length = 234

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N  W SRWF       + + ED KIR++L+  L  AGV++I+IER 
Sbjct: 1   MGQKVNPVGLRLGINRNWTSRWFPSARTAPSNIDEDNKIRKFLKKELYYAGVSEIVIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPGLIIGKKG DIEK+++ L  +   E+ +++ EV +P+ +A L A+++
Sbjct: 61  AKKLRVTVVAARPGLIIGKKGVDIEKVKEGLKTLIKKEVSINIKEVKRPQADAQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q+A++ GA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 ATQLEKRVAFRRAMKKVMQAALKSGAKGIKVRVSGRLAGAEIARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAMTVYGIIGVKVWI 202


>gi|258406179|ref|YP_003198921.1| 30S ribosomal protein S3 [Desulfohalobium retbaense DSM 5692]
 gi|257798406|gb|ACV69343.1| ribosomal protein S3 [Desulfohalobium retbaense DSM 5692]
          Length = 213

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/212 (50%), Positives = 152/212 (71%), Gaps = 2/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG N  W SRWF+R  +Y   ++ED +IR Y++  L  AG++ + IER+
Sbjct: 1   MGQKVHPYGFRLGYNKNWLSRWFSR-KDYPQYVYEDRQIRNYVKSKLYHAGLSSLEIERS 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+I+++ARPG++IG+KG +IEK+R  L      +  + VNE+ +PE NA L+A+++
Sbjct: 60  ASKLRLIIHTARPGIVIGRKGVEIEKLRNDLKKKFKRDFSIEVNEIRRPETNAQLVAENV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMKR +  A +FGA+G+K+  SGRL GA+++RTE + EGRVPLQTLRA
Sbjct: 120 AMQLERRVAFRRAMKRTISLARKFGAEGIKISCSGRLGGADIARTEWFREGRVPLQTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            +DYG AVA T YG  G+KV++  R E+ D +
Sbjct: 180 DLDYGYAVARTTYGVIGVKVWI-FRGEILDDE 210


>gi|167854927|ref|ZP_02477703.1| 30S ribosomal protein S3 [Haemophilus parasuis 29755]
 gi|167853994|gb|EDS25232.1| 30S ribosomal protein S3 [Haemophilus parasuis 29755]
          Length = 234

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W+S WFA   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVHPHGIRLGIVKPWSSTWFANTQDFADNLGGDFKVRQFLNKELANASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  +S +      ++++EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVSKIAGVPAQINISEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 AAQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A T YG  G+KV++
Sbjct: 181 DIDYNTAEAHTTYGVIGVKVWI 202


>gi|90414962|ref|ZP_01222924.1| 30S ribosomal protein S3 [Photobacterium profundum 3TCK]
 gi|90323901|gb|EAS40501.1| 30S ribosomal protein S3 [Photobacterium profundum 3TCK]
          Length = 229

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   E+   L  D K+R++L   LK+A +++++IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNTTWFANSQEFADNLDGDFKVRQFLIKELKKASLSRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  +S +      ++++EV KPE++A L+  SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRAHISKIAGVPAQINISEVRKPELDAQLVGDSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV   GRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVQVGGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  GIKV++
Sbjct: 181 DIDYATSSAHTQYGVIGIKVWI 202


>gi|308047997|ref|YP_003911563.1| 30S ribosomal protein S3P [Ferrimonas balearica DSM 9799]
 gi|307630187|gb|ADN74489.1| SSU ribosomal protein S3P [Ferrimonas balearica DSM 9799]
          Length = 229

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W+S W+A   +Y   L  D ++R++L+  LK A V++I IER 
Sbjct: 1   MGQKVHPNGIRLGITKPWSSTWYAEKKDYADNLFSDHEVRQFLKQELKNASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R K++ +      ++++EV KPE++A L+  S+
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRLKVAKLAGVPAQINISEVRKPELDAQLVGDSV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+K+  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKIEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  GIKV++
Sbjct: 181 DIDYATSEAHTTYGVIGIKVWI 202


>gi|149376678|ref|ZP_01894437.1| 30S ribosomal protein S3 [Marinobacter algicola DG893]
 gi|149359051|gb|EDM47516.1| 30S ribosomal protein S3 [Marinobacter algicola DG893]
          Length = 227

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 152/202 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NP   RLGV    NS W+A  +EY   L  D+++RE+L   L +A V+KI+IER 
Sbjct: 1   MGHKVNPTGMRLGVIKEHNSVWYAEKAEYANNLLNDIQVREFLDKRLVKASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N RI +++ARPG++IGKKG D++++R+++S+M    +H+++ EV KP+++A L+AQ++
Sbjct: 61  AQNARITIHTARPGIVIGKKGEDVDRLRREVSDMMGVPVHINIEEVRKPDLDARLVAQNV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+K+   GRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 AGQLERRVMFRRAMKRAVQNAMRQGAKGIKIQVGGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A+T YG  G+KV++
Sbjct: 181 DIDYSTYEAKTTYGIIGVKVWI 202


>gi|192362436|ref|YP_001981214.1| 30S ribosomal protein S3 [Cellvibrio japonicus Ueda107]
 gi|190688601|gb|ACE86279.1| ribosomal protein S3 [Cellvibrio japonicus Ueda107]
          Length = 226

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/214 (50%), Positives = 153/214 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+     S W+A G++Y   L+ DLK+R Y+Q  L  A V+++ IER 
Sbjct: 1   MGQKVHPNGIRLGIIKKHTSVWYADGTDYADKLNIDLKVRSYIQEKLASASVSRVDIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               RI +++ARPG++IGKKG D++K+R ++S      +H+++ E+ KP+++A L+AQS+
Sbjct: 61  ANTARITIHTARPGIVIGKKGEDVDKLRAEISKQMGVPVHINIEEIRKPDLDAALVAQSV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+AMR GA+G+K+   GRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRQGAEGIKIQVGGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDST 214
            IDY TA A T YG  G+KV++   + + D   T
Sbjct: 181 DIDYATAEASTTYGIIGVKVWIFKGEVIGDVTET 214


>gi|198282643|ref|YP_002218964.1| 30S ribosomal protein S3 [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198247164|gb|ACH82757.1| ribosomal protein S3 [Acidithiobacillus ferrooxidans ATCC 53993]
          Length = 220

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 111/218 (50%), Positives = 157/218 (72%), Gaps = 2/218 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK NPI  RLG+   WNSRW+ + S++   L ED+K+R++++  L    V+ I+IER 
Sbjct: 1   MGQKTNPIGLRLGIIKNWNSRWYGK-SDFQEKLLEDIKVRQFIRERLAGGAVSDIIIERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            ++ RI V++ARPG++IGKKG DIEK+R  +       +H++V E+ KPE++A L+A+S+
Sbjct: 60  ARSARITVHTARPGIVIGKKGEDIEKLRHDVQKRMGVPVHINVEEIRKPELDAQLVAESV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQL RR++FRRAMKRAV +AMRFGA G+++  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 120 AQQLVRRIMFRRAMKRAVTNAMRFGALGMRINCAGRLGGAEIARTEWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAA 218
            IDYG A A T YG  G+KV++  + E+ +  +   AA
Sbjct: 180 DIDYGFAEANTTYGIIGVKVWI-FKGEILEWSTAQTAA 216


>gi|52308149|gb|AAU38649.1| RpsC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 246

 Score =  229 bits (585), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG+   W+S WFA   ++ + L  D K+R++L   L  A V++I IER 
Sbjct: 12  MGQKVNPHGIRLGIVKPWSSTWFANTQDFASNLDGDFKVRKFLNKELANASVSRITIERP 71

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+A SI
Sbjct: 72  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAKIAGVPAQINIAEVKKPELDAKLVADSI 131

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 132 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 191

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 192 DIDYNTSEAHTTYGVIGVKVWI 213


>gi|109896804|ref|YP_660059.1| 30S ribosomal protein S3 [Pseudoalteromonas atlantica T6c]
 gi|122972344|sp|Q15YN3|RS3_PSEA6 RecName: Full=30S ribosomal protein S3
 gi|109699085|gb|ABG39005.1| SSU ribosomal protein S3P [Pseudoalteromonas atlantica T6c]
 gi|332172255|gb|AEE21509.1| ribosomal protein S3 [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 232

 Score =  229 bits (585), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG++  W S W+A  ++Y   L  D ++R+YL   LK A ++KI+IER 
Sbjct: 1   MGQKVHPTGIRLGISKPWTSTWYANTADYADNLFNDHQVRQYLTKALKTASLSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK +S +      +++ EV KPE++  L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRKHVSKLAGVPAQINIAEVRKPELDGQLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R E Y EGRVPL T RA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRIGAKGIKVQVSGRLGGAEIARAEWYREGRVPLHTFRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYATSEANTTYGIIGVKVWI 202


>gi|242278664|ref|YP_002990793.1| 30S ribosomal protein S3 [Desulfovibrio salexigens DSM 2638]
 gi|259495241|sp|C6C191|RS3_DESAD RecName: Full=30S ribosomal protein S3
 gi|242121558|gb|ACS79254.1| ribosomal protein S3 [Desulfovibrio salexigens DSM 2638]
          Length = 213

 Score =  229 bits (585), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/212 (53%), Positives = 153/212 (72%), Gaps = 2/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG    W SRWF+   +Y A ++ED  IR+Y++  +  AGV+KI IER 
Sbjct: 1   MGQKVHPYGFRLGYTKNWLSRWFS-SKDYPAFVYEDDSIRKYVKEKIFHAGVSKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+I+++ARPG+IIG+KG +IEK+R+ L    N E  L V+E+ +PE +A L+A++I
Sbjct: 60  GGKIRLIIHTARPGIIIGRKGVEIEKLREDLRRKFNKEFALEVSEIRRPETDAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRAMKR V  A +FGA+G+KV  +GRL GAE++RTE Y +GRVPLQTLRA
Sbjct: 120 AQQLERRVAFRRAMKRIVGLARKFGAEGIKVACAGRLAGAEIARTEWYRDGRVPLQTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYG A A T YG  GIKV++  + E+ D +
Sbjct: 180 DIDYGVARANTTYGVIGIKVWI-FKGEILDHE 210


>gi|167626800|ref|YP_001677300.1| 30S ribosomal protein S3 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|241667381|ref|ZP_04754959.1| 30S ribosomal protein S3 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254875930|ref|ZP_05248640.1| 30S ribosomal protein S3 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|167596801|gb|ABZ86799.1| 30S ribosomal protein S3 [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254841951|gb|EET20365.1| 30S ribosomal protein S3 [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 222

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 150/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG+    NS W+A  S+Y   L+ED+K+RE+L   L  A V+KI IER 
Sbjct: 1   MGQKVNPNGIRLGIVKEHNSTWYADSSDYATKLNEDIKVREFLHKKLASAAVSKIQIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N +I +++ARPG++IGKKG D+EK+R  ++ +    + +++ EV KPEI+A L+A S+
Sbjct: 61  AQNAKITIHTARPGIVIGKKGEDVEKLRADVNKLMGVPVQINIEEVRKPEIDAKLVADSV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV+FRRAMK+A+Q+AM+ GA G+K++ SGRL GAE++R+E   +GRVPLQT RA
Sbjct: 121 AQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVSGRLGGAEIARSEWARDGRVPLQTFRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            +DY T+ A T YG  G+KV++
Sbjct: 181 DVDYATSKALTTYGIIGVKVWI 202


>gi|50086209|ref|YP_047719.1| 30S ribosomal protein S3 [Acinetobacter sp. ADP1]
 gi|61215530|sp|Q6F7R8|RS3_ACIAD RecName: Full=30S ribosomal protein S3
 gi|49532185|emb|CAG69897.1| 30S ribosomal protein S3 [Acinetobacter sp. ADP1]
          Length = 250

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/208 (52%), Positives = 154/208 (74%), Gaps = 1/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLGV    N+ W+A   +Y   L +DL++RE+L   LK A V+ ILIER 
Sbjct: 1   MGQKVHPIGIRLGVVKRHNANWYANPKQYAEYLLKDLQVREFLTKKLKSAMVSNILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ + +ARPG++IGKKG DIEK++++L+N+      +S+NE+ +P+++A L+A++I
Sbjct: 61  TGAAKVTISTARPGIVIGKKGEDIEKLQRELTNIMGVPAQVSINEIDRPDLDARLVAEAI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV+FRRAMKRAVQ++MR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLEKRVMFRRAMKRAVQNSMRAGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T  AET YG+ G+KV++  R E+
Sbjct: 181 DIDYATMRAETTYGTIGVKVWI-FRGEI 207


>gi|152989978|ref|YP_001355700.1| 30S ribosomal protein S3 [Nitratiruptor sp. SB155-2]
 gi|189045023|sp|A6Q1I4|RS3_NITSB RecName: Full=30S ribosomal protein S3
 gi|151421839|dbj|BAF69343.1| 30S ribosomal protein S3 [Nitratiruptor sp. SB155-2]
          Length = 229

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF   ++    + ED KIR++L+  L  AG++ I+IERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPDFNKMPERVEEDNKIRKFLKKELYYAGISNIIIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ + +ARPG+IIGKKG DIEK+++KL  +   E+ +++ E  +P+ +A L A+++
Sbjct: 61  AKKLRVTIVAARPGIIIGKKGADIEKLKQKLQKLVGKEVFINIKEEKRPQASAQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK+ +Q+A + G  G+KV  +GRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 ATQLERRVAFRRAMKKVIQAAQKAGVKGIKVQVAGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAHTTYGVIGVKVWI 202


>gi|262373515|ref|ZP_06066793.1| ribosomal protein S3 [Acinetobacter junii SH205]
 gi|262311268|gb|EEY92354.1| ribosomal protein S3 [Acinetobacter junii SH205]
          Length = 250

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/208 (52%), Positives = 153/208 (73%), Gaps = 1/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLGV    N+ W+A   +Y   L +DL++RE+L   LK A V+ ILIER 
Sbjct: 1   MGQKVHPIGIRLGVVKRHNANWYASPKQYAEYLLKDLQVREFLTKKLKNAMVSNILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ + +ARPG++IGKKG DIEK++++L+N+      +S+NE+ +P+++A L+A++I
Sbjct: 61  TGAAKVTISTARPGIVIGKKGEDIEKLQRELTNIMGVPAQVSINEIDRPDLDARLVAEAI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV+FRRAMKRAVQ+ MR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLEKRVMFRRAMKRAVQNTMRAGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T  AET YG+ G+KV++  R E+
Sbjct: 181 DIDYATMRAETTYGTIGVKVWI-FRGEI 207


>gi|218667516|ref|YP_002424836.1| ribosomal protein S3 [Acidithiobacillus ferrooxidans ATCC 23270]
 gi|218519729|gb|ACK80315.1| ribosomal protein S3 [Acidithiobacillus ferrooxidans ATCC 23270]
          Length = 228

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 111/218 (50%), Positives = 157/218 (72%), Gaps = 2/218 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK NPI  RLG+   WNSRW+ + S++   L ED+K+R++++  L    V+ I+IER 
Sbjct: 9   MGQKTNPIGLRLGIIKNWNSRWYGK-SDFQEKLLEDIKVRQFIRERLAGGAVSDIIIERP 67

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            ++ RI V++ARPG++IGKKG DIEK+R  +       +H++V E+ KPE++A L+A+S+
Sbjct: 68  ARSARITVHTARPGIVIGKKGEDIEKLRHDVQKRMGVPVHINVEEIRKPELDAQLVAESV 127

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQL RR++FRRAMKRAV +AMRFGA G+++  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 128 AQQLVRRIMFRRAMKRAVTNAMRFGALGMRINCAGRLGGAEIARTEWYREGRVPLHTLRA 187

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAA 218
            IDYG A A T YG  G+KV++  + E+ +  +   AA
Sbjct: 188 DIDYGFAEANTTYGIIGVKVWI-FKGEILEWSTAQTAA 224


>gi|169632356|ref|YP_001706092.1| 30S ribosomal protein S3 [Acinetobacter baumannii SDF]
 gi|226697657|sp|B0VQS4|RS3_ACIBS RecName: Full=30S ribosomal protein S3
 gi|169151148|emb|CAO99820.1| 30S ribosomal protein S3 [Acinetobacter baumannii]
          Length = 250

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 109/208 (52%), Positives = 153/208 (73%), Gaps = 1/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P+  RLGV    N+ W+A   +Y   L +DL++RE+L   LK A V+ ILIER 
Sbjct: 1   MGQKVHPVGIRLGVVKRHNANWYANPKQYAEYLLKDLQVREFLTKKLKNAMVSNILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ + +ARPG++IGKKG DIEK++++L+N+      +S+NE+ +P+++A L+A++I
Sbjct: 61  SGAAKVTISTARPGIVIGKKGEDIEKLQRELTNIMGVPAQVSINEIDRPDLDARLVAEAI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV+FRRAMKRAVQ+ MR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLEKRVMFRRAMKRAVQNTMRAGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T  AET YG+ G+KV++  R E+
Sbjct: 181 DIDYATMRAETTYGTIGVKVWI-FRGEI 207


>gi|269140565|ref|YP_003297266.1| 30S ribosomal protein S3 [Edwardsiella tarda EIB202]
 gi|267986226|gb|ACY86055.1| 30S ribosomal protein S3 [Edwardsiella tarda EIB202]
 gi|304560353|gb|ADM43017.1| SSU ribosomal protein S3p (S3e) [Edwardsiella tarda FL6-60]
          Length = 233

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A   E+   L  D K+R++L   L++A V++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWYANTKEFADNLDSDFKVRQFLNKELEKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++ +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKGVAEIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QL RRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLVRRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|312884697|ref|ZP_07744398.1| 30S ribosomal protein S3 [Vibrio caribbenthicus ATCC BAA-2122]
 gi|323495510|ref|ZP_08100584.1| 30S ribosomal protein S3 [Vibrio sinaloensis DSM 21326]
 gi|309367610|gb|EFP95161.1| 30S ribosomal protein S3 [Vibrio caribbenthicus ATCC BAA-2122]
 gi|323319391|gb|EGA72328.1| 30S ribosomal protein S3 [Vibrio sinaloensis DSM 21326]
          Length = 232

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   ++   L  D K+R++L   LK+A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNATWFANTKDFADNLDGDFKVRQFLTSELKKASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+  SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRTAVAKIAGVPAQINIAEVRKPELDAQLVGDSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  GIKV++
Sbjct: 181 DIDYATSSAHTQYGVIGIKVWI 202


>gi|297582456|ref|YP_003698236.1| 30S ribosomal protein S3 [Bacillus selenitireducens MLS10]
 gi|297140913|gb|ADH97670.1| ribosomal protein S3 [Bacillus selenitireducens MLS10]
          Length = 219

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 150/202 (74%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP   R+GV   W S+W+A G +Y  LLHED++IRE+L+  L +A V+ I IER 
Sbjct: 1   MGQKINPNGLRVGVIKGWESKWYA-GKDYADLLHEDIRIREFLENRLTEASVSTIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +++A+PG++IGK G+++E +RK L++MT   +H+++NE+ +P++++ L+A++I
Sbjct: 60  ANRVNVTIFTAKPGMVIGKGGSEVEALRKALNDMTGKRVHININEIKRPDLDSKLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE R+ FRRAMK+ +Q  MR GA G++   SGRL GA+++R+E Y EG VPL TLRA
Sbjct: 120 ARQLENRISFRRAMKQTIQRTMRSGAKGIRTQVSGRLGGADIARSESYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYGTA A+T YG  GIKV++
Sbjct: 180 DIDYGTAEADTTYGKLGIKVWI 201


>gi|15603274|ref|NP_246348.1| 30S ribosomal protein S3 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|27734533|sp|Q9CL37|RS3_PASMU RecName: Full=30S ribosomal protein S3
 gi|12721784|gb|AAK03493.1| RpS3 [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 235

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/225 (49%), Positives = 154/225 (68%), Gaps = 1/225 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W+S WFA   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVHPHGIRLGIVKPWSSTWFANTQDFADNLDGDFKVRKFLNKELANASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAAIAGVPAQINIAEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDY TA A T YG  GIKV++  + E+    + I   E +  +K
Sbjct: 181 DIDYNTAEAHTTYGVIGIKVWI-FKGEILGGMAAIAQPEQQPADK 224


>gi|330447031|ref|ZP_08310681.1| ribosomal protein S3 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491222|dbj|GAA05178.1| ribosomal protein S3 [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 229

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   E+   L  D K+R++L   L +A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNTTWFANSQEFADNLDGDFKVRQFLTKELAKASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++  L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRAAVAKIAGVPAQINIAEVRKPELDGQLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYATSSAHTQYGVIGVKVWI 202


>gi|225849542|ref|YP_002729707.1| ribosomal protein S3 [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643333|gb|ACN98383.1| ribosomal protein S3 [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 226

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/209 (50%), Positives = 153/209 (73%), Gaps = 1/209 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI FRLG+   W S+W+A   +Y  LLHEDL IR+++Q   K AG+A ++IER 
Sbjct: 1   MGQKVHPIGFRLGITQDWRSKWYADKKKYTKLLHEDLAIRQFIQDRYKAAGIADVIIERL 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNS-EIHLSVNEVPKPEINATLIAQS 119
               R+ + +ARPG++IG KGT++EK+ + L N++++ EI ++V+EV +PE+NA L+A+ 
Sbjct: 61  GDKLRVKILAARPGIVIGAKGTEVEKLNETLKNISSAKEILINVDEVKRPELNAKLVAED 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IA QLERRV  RRAMK+A+ +AM+ GA G+K    GR+ G +L+R E ++ GR+PLQTL+
Sbjct: 121 IALQLERRVTHRRAMKKAIDAAMKAGAKGIKTQVGGRIGGVDLARKEWFMAGRMPLQTLK 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYVSLRDEV 208
           A IDYGTA A T YG  G+KV++   D+V
Sbjct: 181 ADIDYGTARASTKYGILGVKVWIYKGDKV 209


>gi|210135470|ref|YP_002301909.1| 30S ribosomal protein S3 [Helicobacter pylori P12]
 gi|226697718|sp|B6JNF1|RS3_HELP2 RecName: Full=30S ribosomal protein S3
 gi|210133438|gb|ACJ08429.1| 30S ribosomal protein S3 [Helicobacter pylori P12]
          Length = 234

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N  W SRWF       + + ED KIR++L+  L  AGV++I+IER 
Sbjct: 1   MGQKVNPVGLRLGINRNWTSRWFPSARTAPSNIDEDNKIRKFLKKELYYAGVSEIVIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPGLIIGKKG DIEK+++ L  +   E+ +++ EV +P+ +A L A+++
Sbjct: 61  AKKLRVTVVAARPGLIIGKKGVDIEKVKEGLKTLIKKEVSINIKEVKRPQADAQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q+A++ GA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 ATQLEKRVAFRRAMKKVMQAALKSGAKGIKVCVSGRLAGAEIARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAMTVYGIIGVKVWI 202


>gi|239905864|ref|YP_002952603.1| 30S ribosomal protein S3 [Desulfovibrio magneticus RS-1]
 gi|259495243|sp|C4XLX9|RS3_DESMR RecName: Full=30S ribosomal protein S3
 gi|239795728|dbj|BAH74717.1| 30S ribosomal protein S3 [Desulfovibrio magneticus RS-1]
          Length = 213

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/212 (51%), Positives = 156/212 (73%), Gaps = 2/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG N  W SRWF++  +Y   + ED KIR++++  L  AG++KI IER 
Sbjct: 1   MGQKVHPYGFRLGYNKNWLSRWFSK-KDYPEFVFEDNKIRKFVKKSLYHAGISKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+I+++ARPG++IG+KGT+IEK+R  L    + E  + VNE+ +PEI+A L+A++I
Sbjct: 60  GGKIRLIIHTARPGIVIGRKGTEIEKVRGDLKQRFSREFTVEVNEIRRPEIDAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMKR V  + +FGA+G+KV  +GRL GAE++R+E Y +GRVPLQTLRA
Sbjct: 120 ALQLERRVAFRRAMKRTVGLSRKFGAEGIKVSCAGRLAGAEIARSEWYRDGRVPLQTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYG A+A+T YG  G+KV++  + E+ D +
Sbjct: 180 DIDYGYAIAKTTYGVIGVKVWI-FKGEILDHE 210


>gi|54307547|ref|YP_128567.1| 30S ribosomal protein S3 [Photobacterium profundum SS9]
 gi|61215569|sp|Q6LVB0|RS3_PHOPR RecName: Full=30S ribosomal protein S3
 gi|46911967|emb|CAG18765.1| putative ribosomal protein S3 [Photobacterium profundum SS9]
          Length = 229

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   E+   L  D K+R++L   LK+A +++++IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNTTWFANSQEFADNLDGDFKVRQFLIKELKKASLSRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  +S +      ++++EV KPE++A L+  SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRAHISKIAGVPAQINISEVRKPELDAQLVGDSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV   GRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVQVGGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYATSSAHTQYGVIGVKVWI 202


>gi|217032066|ref|ZP_03437566.1| hypothetical protein HPB128_16g26 [Helicobacter pylori B128]
 gi|298735662|ref|YP_003728187.1| 30S ribosomal protein S3 [Helicobacter pylori B8]
 gi|216946214|gb|EEC24822.1| hypothetical protein HPB128_16g26 [Helicobacter pylori B128]
 gi|298354851|emb|CBI65723.1| small subunit ribosomal protein S3 [Helicobacter pylori B8]
          Length = 234

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N  W SRWF       + + ED KIR++L+  L  AGV++I+IER 
Sbjct: 1   MGQKVNPVGLRLGINRNWTSRWFPSARTAPSNIDEDNKIRKFLKKELYYAGVSEIVIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPGLIIGKKG DIEK+++ L  +   E+ +++ EV +P+ +A L A+++
Sbjct: 61  AKKLRVTVVAARPGLIIGKKGVDIEKVKEGLKALIKKEVSINIKEVKRPQADAQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q+A++ GA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 ATQLEKRVAFRRAMKKVMQAALKSGAKGIKVRVSGRLAGAEIARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAMTVYGIIGVKVWI 202


>gi|90020613|ref|YP_526440.1| 30S ribosomal protein S3 [Saccharophagus degradans 2-40]
 gi|123396486|sp|Q21M51|RS3_SACD2 RecName: Full=30S ribosomal protein S3
 gi|89950213|gb|ABD80228.1| SSU ribosomal protein S3P [Saccharophagus degradans 2-40]
          Length = 224

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+     S W+A  +EY   L++DL++R+Y+Q  L  A V++I IER 
Sbjct: 1   MGQKVHPTGIRLGIVKKHTSTWYAGKAEYADKLNQDLQVRKYIQNALAHASVSRIDIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+ +++ARPG++IGKKG D+EK+R +L+      +H+++ E+ KP+++A L AQS+
Sbjct: 61  ANTARVTIHTARPGIVIGKKGEDVEKLRTELTKQMGVPVHINIEEIRKPDLDAALAAQSV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKR VQ+AMR GA+GVKV   GRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRTVQNAMRQGAEGVKVQVGGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A T YG  G+KV++
Sbjct: 181 DIDYATAEASTTYGIIGVKVWI 202


>gi|223041823|ref|ZP_03612013.1| 30S ribosomal protein S3 [Actinobacillus minor 202]
 gi|240947878|ref|ZP_04752318.1| 30S ribosomal protein S3 [Actinobacillus minor NM305]
 gi|223017392|gb|EEF15813.1| 30S ribosomal protein S3 [Actinobacillus minor 202]
 gi|240297840|gb|EER48276.1| 30S ribosomal protein S3 [Actinobacillus minor NM305]
          Length = 235

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 145/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTQDFADNLDGDFKVRKFLNKELANASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAKIAGVPAQINIAEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AM+ GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMKLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A T YG  G+KV++
Sbjct: 181 DIDYNTAEAHTTYGVIGVKVWI 202


>gi|254506464|ref|ZP_05118606.1| ribosomal protein S3 [Vibrio parahaemolyticus 16]
 gi|260779497|ref|ZP_05888387.1| SSU ribosomal protein S3p (S3e) [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|323492125|ref|ZP_08097287.1| 30S ribosomal protein S3 [Vibrio brasiliensis LMG 20546]
 gi|219550638|gb|EED27621.1| ribosomal protein S3 [Vibrio parahaemolyticus 16]
 gi|260604306|gb|EEX30610.1| SSU ribosomal protein S3p (S3e) [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|323313686|gb|EGA66788.1| 30S ribosomal protein S3 [Vibrio brasiliensis LMG 20546]
          Length = 232

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   ++   L  D K+R++L   LK+A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNATWFANTKDFADNLDGDFKVRQFLTSELKKASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+  SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRAAVAKIAGVPAQINIAEVRKPELDAQLVGDSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  GIKV++
Sbjct: 181 DIDYATSSAHTQYGVIGIKVWI 202


>gi|254282595|ref|ZP_04957563.1| ribosomal protein S3 [gamma proteobacterium NOR51-B]
 gi|219678798|gb|EED35147.1| ribosomal protein S3 [gamma proteobacterium NOR51-B]
          Length = 224

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/221 (50%), Positives = 152/221 (68%), Gaps = 1/221 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLGV    NS W+A    Y   L  DL++REY+   L  A V++++IER 
Sbjct: 1   MGQKVHPTGIRLGVVKDHNSVWYADSKNYAKNLISDLQVREYILKKLDAASVSRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               RI +++ARPG++IGKKG D+E +RK+LS      +H+++ E+ KP+++A L+AQ++
Sbjct: 61  AATARITIHTARPGIVIGKKGEDVEALRKELSAKMGVPVHINIEEIRKPDLDARLVAQNV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKR VQ+AMR GA+G+KV   GRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRVVQNAMRQGAEGIKVQVGGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY T  AET YG  G+KV++  + EV   D   P    R
Sbjct: 181 DIDYSTYEAETTYGIIGVKVWI-FKGEVIGGDDDAPDTSRR 220


>gi|15612298|ref|NP_223951.1| 30S ribosomal protein S3 [Helicobacter pylori J99]
 gi|7388209|sp|Q9ZJR9|RS3_HELPJ RecName: Full=30S ribosomal protein S3
 gi|4155825|gb|AAD06799.1| 30S RIBOSOMAL PROTEIN S3 [Helicobacter pylori J99]
 gi|297380494|gb|ADI35381.1| ribosomal protein S3 [Helicobacter pylori v225d]
 gi|308064090|gb|ADO05977.1| 30S ribosomal protein S3 [Helicobacter pylori Sat464]
 gi|317009996|gb|ADU80576.1| 30S ribosomal protein S3 [Helicobacter pylori India7]
          Length = 234

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N  W SRWF       + + ED KIR++L+  L  AGV++I+IER 
Sbjct: 1   MGQKVNPVGLRLGINRNWTSRWFPSTRTAPSNIDEDNKIRKFLKKELYYAGVSEIVIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPGLIIGKKG DIEK+++ L  +   E+ +++ EV +P+ +A L A+++
Sbjct: 61  AKKLRVTVVAARPGLIIGKKGVDIEKVKEGLKTLIKKEVSINIKEVKRPQADAQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q+A++ GA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 ATQLEKRVAFRRAMKKVMQAALKSGAKGIKVRVSGRLAGAEIARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAMTVYGIIGVKVWI 202


>gi|153840303|ref|ZP_01992970.1| ribosomal protein S3 [Vibrio parahaemolyticus AQ3810]
 gi|149746038|gb|EDM57168.1| ribosomal protein S3 [Vibrio parahaemolyticus AQ3810]
          Length = 240

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   ++   L  D K+R++L   LK+A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNATWFANTKDFADNLDGDFKVRQFLTSELKKASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+  SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRAAVAKIAGVPAQINIAEVRKPELDAQLVGDSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  GIK ++
Sbjct: 181 DIDYATSSAHTQYGVIGIKTWI 202


>gi|226953877|ref|ZP_03824341.1| 30S ribosomal protein S3 [Acinetobacter sp. ATCC 27244]
 gi|294651628|ref|ZP_06728932.1| 30S ribosomal protein S3 [Acinetobacter haemolyticus ATCC 19194]
 gi|226835360|gb|EEH67743.1| 30S ribosomal protein S3 [Acinetobacter sp. ATCC 27244]
 gi|292822477|gb|EFF81376.1| 30S ribosomal protein S3 [Acinetobacter haemolyticus ATCC 19194]
          Length = 250

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 109/208 (52%), Positives = 153/208 (73%), Gaps = 1/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLGV    N+ W+A   +Y   L +DL++RE+L   LK A ++ ILIER 
Sbjct: 1   MGQKVHPIGIRLGVVKRHNANWYASPKQYAEYLLKDLQVREFLTKKLKNAMISNILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ + +ARPG++IGKKG DIEK++++L+N+      +S+NE+ +P+++A L+A++I
Sbjct: 61  TGAAKVTISTARPGIVIGKKGEDIEKLQRELTNIMGVPAQVSINEIDRPDLDARLVAEAI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV+FRRAMKRAVQ+ MR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLEKRVMFRRAMKRAVQNTMRAGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T  AET YG+ G+KV++  R E+
Sbjct: 181 DIDYATMRAETTYGTIGVKVWI-FRGEI 207


>gi|89893223|ref|YP_516710.1| 30S ribosomal protein S3 [Desulfitobacterium hafniense Y51]
 gi|123091860|sp|Q250M6|RS3_DESHY RecName: Full=30S ribosomal protein S3
 gi|89332671|dbj|BAE82266.1| 30S ribosomal protein S3 [Desulfitobacterium hafniense Y51]
          Length = 219

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 148/202 (73%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   R+G+   W  RWFA    Y  LLHEDLK+R++++  L+QAGV K+ IER 
Sbjct: 1   MGQKVNPKGLRVGIIRDWEGRWFA-DKNYLELLHEDLKVRKFVKTKLQQAGVPKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ +++A+PG++IG+ GT++E +RK+L  MT  ++ +++ EV KPE++A L+A+S+
Sbjct: 60  ANRVKVSIHAAKPGIVIGRGGTEVENLRKQLEAMTGKQVAVNIVEVKKPELDAQLVAESV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV FRRAMK+ VQ  MR G  G+K+  SGRL GAE++RTE Y EG+VPL TLRA
Sbjct: 120 AQQLEKRVSFRRAMKQTVQRTMRQGGQGIKISCSGRLGGAEIARTEWYSEGKVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 180 DIDYGFAEANTTYGKIGVKVWI 201


>gi|325294402|ref|YP_004280916.1| ribosomal protein S3 [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325064850|gb|ADY72857.1| ribosomal protein S3 [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 232

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/216 (49%), Positives = 152/216 (70%), Gaps = 1/216 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFAR-GSEYGALLHEDLKIREYLQCHLKQAGVAKILIER 59
           MGQK++PI FRLG+   W ++W  +   +Y   LHEDLKIR+ ++     AG+A+I IER
Sbjct: 1   MGQKVHPIGFRLGITKDWEAKWVVKEKGKYVKFLHEDLKIRDLIKKKYYHAGIARIDIER 60

Query: 60  THKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQS 119
           T     I +++ARPGL+I +KG +++ +RK L  +T   +++++ EV  P++NA L+A++
Sbjct: 61  TLDRINIRIWAARPGLLIARKGAEVKALRKYLEELTGKSVYINIEEVKYPQLNAQLVAEN 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           +AQQLERRV FRRAMKR +  AM+ GA G+KV  +GRL GA+++RTE Y EGRVPLQT+R
Sbjct: 121 VAQQLERRVAFRRAMKRVIADAMKAGAKGIKVQCAGRLGGADMARTEWYREGRVPLQTIR 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
           A IDYGTA+A+T YG  G+KV++   D   D    I
Sbjct: 181 ADIDYGTAIAKTKYGVIGVKVWIYKGDVYKDETEEI 216


>gi|283853159|ref|ZP_06370412.1| ribosomal protein S3 [Desulfovibrio sp. FW1012B]
 gi|283571417|gb|EFC19424.1| ribosomal protein S3 [Desulfovibrio sp. FW1012B]
          Length = 213

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 109/212 (51%), Positives = 157/212 (74%), Gaps = 2/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG N  W SRWF++  +Y A + ED +IR++++ +L  AG++KI IER 
Sbjct: 1   MGQKVHPYGFRLGYNKNWLSRWFSK-KDYPAFVFEDNQIRKFVKKNLYHAGISKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+I+++ARPG++IG+KGT+IEK+R  L      E  + VNE+ +PEI++ L+A++I
Sbjct: 60  GGKIRLIIHTARPGIVIGRKGTEIEKVRGDLKQRFGREFTVEVNEIRRPEIDSQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMKR V  + +FGA+G+KV  +GRL GAE++R+E Y +GRVPLQTLRA
Sbjct: 120 ALQLERRVAFRRAMKRTVGLSRKFGAEGIKVSCAGRLAGAEIARSEWYRDGRVPLQTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYG A+A+T YG  G+KV++  + E+ D +
Sbjct: 180 DIDYGYAIAKTTYGVIGVKVWI-FKGEILDHE 210


>gi|226226285|ref|YP_002760391.1| 30S ribosomal protein S3 [Gemmatimonas aurantiaca T-27]
 gi|259495248|sp|C1A6R1|RS3_GEMAT RecName: Full=30S ribosomal protein S3
 gi|226089476|dbj|BAH37921.1| 30S ribosomal protein S3 [Gemmatimonas aurantiaca T-27]
          Length = 219

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 108/210 (51%), Positives = 149/210 (70%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK NPI FRLGV   W S W+A+  E  ALL ED  +R+YL+  L  A +A + IER 
Sbjct: 1   MGQKTNPIGFRLGVTKNWRSTWYAK-KEMPALLKEDALLRKYLKARLDNAAIADVTIERK 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + V++ RPG++IGKKG +++K+R +L+ +T  E+ ++V E+ +PE+ A L+A +I
Sbjct: 60  PGKVVVTVHTGRPGVVIGKKGAEVDKLRDELAQLTGKEVGINVEEIKRPEVEAQLVADNI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QL +R+ FRRAMKRAVQSAMR GA G+KV A GRL GAE++R E Y+EGRVPL TLRA
Sbjct: 120 AAQLSQRISFRRAMKRAVQSAMRMGALGIKVKAGGRLGGAEIARVEGYMEGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            I+Y T+ A+T YG+ G+KV++   + V D
Sbjct: 180 DINYATSTAKTTYGTIGVKVWIFKGEIVED 209


>gi|311693277|gb|ADP96150.1| 30S ribosomal protein S3 [marine bacterium HP15]
          Length = 227

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 150/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NP   RLGV    NS W+A   EY   L  D+++RE+L   L +A V+KI+IER 
Sbjct: 1   MGHKVNPTGIRLGVIKEHNSVWYADKKEYSKNLLNDIQVREFLDKRLVKASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N RI +++ARPG++IGKKG D++++R+++S+M    +H+++ EV KP+++A L+AQ++
Sbjct: 61  AQNARITIHTARPGIVIGKKGEDVDRLRREVSDMMGVPVHINIEEVRKPDLDARLVAQNV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+K+   GRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 AGQLERRVMFRRAMKRAVQNAMRQGAKGIKIQVGGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A T YG  G+KV++
Sbjct: 181 DIDYATYEAHTTYGVIGVKVWI 202


>gi|269104018|ref|ZP_06156715.1| SSU ribosomal protein S3p (S3e) [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163916|gb|EEZ42412.1| SSU ribosomal protein S3p (S3e) [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 232

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   ++   L  D K+R++L   L +A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNTTWFANSQDFADNLDGDFKVRQFLTKELAKASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++  L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRAAVAKIAGVPAQINIAEVRKPELDGQLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  GIKV++
Sbjct: 181 DIDYATSSAHTQYGVIGIKVWI 202


>gi|317182559|dbj|BAJ60343.1| 30S ribosomal protein S3 [Helicobacter pylori F57]
          Length = 234

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N  W SRWF       + + ED KIR++L+  L  AGV++I+IER 
Sbjct: 1   MGQKVNPVGLRLGINRNWTSRWFPSARTAPSNIDEDNKIRKFLKKELYYAGVSEIVIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPGLIIGKKG DIEK+++ L  +   E+ +++ EV +P+ ++ L A+++
Sbjct: 61  AKKLRVTVVAARPGLIIGKKGVDIEKVKEGLKTLIKKEVSINIKEVKRPQADSQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q+A++ GA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 ATQLEKRVAFRRAMKKVMQAALKSGAKGIKVRVSGRLAGAEIARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAMTVYGIIGVKVWI 202


>gi|323700812|ref|ZP_08112724.1| ribosomal protein S3 [Desulfovibrio sp. ND132]
 gi|323460744|gb|EGB16609.1| ribosomal protein S3 [Desulfovibrio desulfuricans ND132]
          Length = 213

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 108/212 (50%), Positives = 156/212 (73%), Gaps = 2/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG N  W SRW++R  +Y A + +D ++R++++  L QAGV++I IER 
Sbjct: 1   MGQKVHPYGFRLGYNKNWLSRWYSR-KDYPAFVFQDDQVRKFVKKKLFQAGVSRIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+I+++ARPG++IG+KG +IEK+R++L +   +E  + VNE+ +PE+ A L+A+SI
Sbjct: 60  GGKIRLIIHTARPGIVIGRKGVEIEKLREELRSKFQTEFTIEVNEIRRPEVEAQLVAESI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR+ FRRAMKR V  A +FGA+G+KV  +GRL GAE++R E Y +GRVPL TLRA
Sbjct: 120 AQQLERRIAFRRAMKRTVGLARKFGAEGIKVACAGRLAGAEIARGEWYRDGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYG A A T YG  G+KV++  + E+ D +
Sbjct: 180 DIDYGFAEASTTYGVIGVKVWI-FKGEILDKE 210


>gi|317014704|gb|ADU82140.1| 30S ribosomal protein S3 [Helicobacter pylori Gambia94/24]
          Length = 234

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N  W SRWF       + + ED KIR++L+  L  AGV++I+IER 
Sbjct: 1   MGQKVNPVGLRLGINRNWTSRWFPSARTAPSNIDEDNKIRKFLKKELYYAGVSEIVIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPGLIIGKKG DIEK+++ L  +   E+ +++ EV +P+ +A L A+++
Sbjct: 61  AKKLRVTVVAARPGLIIGKKGVDIEKVKEGLKVLIKKEVSINIKEVKRPQADAQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q+A++ GA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 ATQLEKRVAFRRAMKKVMQAALKSGAKGIKVRVSGRLAGAEIARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAMTVYGIIGVKVWI 202


>gi|255319809|ref|ZP_05361014.1| ribosomal protein S3 [Acinetobacter radioresistens SK82]
 gi|262380342|ref|ZP_06073496.1| ribosomal protein S3 [Acinetobacter radioresistens SH164]
 gi|255303128|gb|EET82340.1| ribosomal protein S3 [Acinetobacter radioresistens SK82]
 gi|262297788|gb|EEY85703.1| ribosomal protein S3 [Acinetobacter radioresistens SH164]
          Length = 250

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 109/208 (52%), Positives = 153/208 (73%), Gaps = 1/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLGV    N+ W+A   +Y   L +DL++RE+L   LK A ++ ILIER 
Sbjct: 1   MGQKVHPIGIRLGVVKRHNANWYANPKQYAEYLLKDLQVREFLTKKLKSAMISNILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ + +ARPG++IGKKG DIEK++++L+N+      +S+NE+ +P+++A L+A++I
Sbjct: 61  TGAAKVTISTARPGIVIGKKGEDIEKLQRELTNIMGVPAQVSINEIDRPDLDARLVAEAI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV+FRRAMKRAVQ+ MR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLEKRVMFRRAMKRAVQNTMRAGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T  AET YG+ G+KV++  R E+
Sbjct: 181 DIDYATMRAETTYGTIGVKVWI-FRGEI 207


>gi|87122977|ref|ZP_01078838.1| 30S ribosomal protein S3 [Marinomonas sp. MED121]
 gi|86161745|gb|EAQ63049.1| 30S ribosomal protein S3 [Marinomonas sp. MED121]
          Length = 226

 Score =  229 bits (583), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+     S W+A    Y  LL  DL++R+YL+  L QA V++I I+R 
Sbjct: 1   MGQKVHPTGIRLGIVKDHTSTWYANNQNYSKLLLNDLQVRKYLEGKLVQASVSRIEIQRP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            ++ RI +++ARPG++IGKKG D+EK+R  +S+M    +H+++ E+ KPE++A L+AQ+I
Sbjct: 61  AQSARITIHTARPGIVIGKKGEDVEKLRNAVSDMMGVPVHINIEEIRKPELDAKLVAQNI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AGQLERRVMFRRAMKRAVQNAMRAGAKGIKVQVSGRLGGAEIARAEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A T YG  G+K ++
Sbjct: 181 DIDYATYEANTTYGIIGVKTWI 202


>gi|331005020|ref|ZP_08328427.1| SSU ribosomal protein S3p (S3e) [gamma proteobacterium IMCC1989]
 gi|330421186|gb|EGG95445.1| SSU ribosomal protein S3p (S3e) [gamma proteobacterium IMCC1989]
          Length = 228

 Score =  228 bits (582), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 105/221 (47%), Positives = 154/221 (69%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+     S W+A  +EY   LH DL +R+Y++  L  A V+++ IER 
Sbjct: 1   MGQKVHPTGIRLGIVKKHTSTWYANSNEYADKLHADLSVRKYIETKLASASVSRVDIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ +++ARPG++IGKKG D+EK+R ++S +    +H+++ E+ KP+++A L+A+S+
Sbjct: 61  ANTAKVTIHTARPGIVIGKKGEDVEKLRNEVSKIMGVPVHINIEEIRKPDLDAKLVAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+K+   GRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRQGAQGIKIQVGGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDY TA A T YG  G+KV++   + + D     PA + +
Sbjct: 181 DIDYSTAEAATTYGIIGVKVWIFKGEVIGDVVDAEPAPKKK 221


>gi|126176349|ref|YP_001052498.1| 30S ribosomal protein S3 [Shewanella baltica OS155]
 gi|152998755|ref|YP_001364436.1| 30S ribosomal protein S3 [Shewanella baltica OS185]
 gi|160873332|ref|YP_001552648.1| 30S ribosomal protein S3 [Shewanella baltica OS195]
 gi|217975195|ref|YP_002359946.1| 30S ribosomal protein S3 [Shewanella baltica OS223]
 gi|304412771|ref|ZP_07394373.1| ribosomal protein S3 [Shewanella baltica OS183]
 gi|307307435|ref|ZP_07587170.1| ribosomal protein S3 [Shewanella baltica BA175]
 gi|189045334|sp|A3DA66|RS3_SHEB5 RecName: Full=30S ribosomal protein S3
 gi|189045335|sp|A6WHT4|RS3_SHEB8 RecName: Full=30S ribosomal protein S3
 gi|189045336|sp|A9KWA8|RS3_SHEB9 RecName: Full=30S ribosomal protein S3
 gi|254764545|sp|B8EBJ9|RS3_SHEB2 RecName: Full=30S ribosomal protein S3
 gi|125999554|gb|ABN63629.1| SSU ribosomal protein S3P [Shewanella baltica OS155]
 gi|151363373|gb|ABS06373.1| ribosomal protein S3 [Shewanella baltica OS185]
 gi|160858854|gb|ABX47388.1| ribosomal protein S3 [Shewanella baltica OS195]
 gi|217500330|gb|ACK48523.1| ribosomal protein S3 [Shewanella baltica OS223]
 gi|304348851|gb|EFM13267.1| ribosomal protein S3 [Shewanella baltica OS183]
 gi|306910223|gb|EFN40656.1| ribosomal protein S3 [Shewanella baltica BA175]
 gi|315265559|gb|ADT92412.1| ribosomal protein S3 [Shewanella baltica OS678]
          Length = 230

 Score =  228 bits (582), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 109/210 (51%), Positives = 153/210 (72%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W S W+A  S+Y + L+ D ++R++L   L+ A V+KI+IER 
Sbjct: 1   MGQKVHPNGIRLGITKPWISTWYADKSDYASNLNSDWEVRKFLVEKLQAASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+E +R  +S +  +   +++ E+ KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEVLRAAVSKLAGTPAQINIAEIRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRIGAQGIKVQVSGRLGGAEIARDEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            IDY T+ + T YG  G+KV++  + EV D
Sbjct: 181 DIDYSTSESHTQYGVIGVKVWI-FKGEVLD 209


>gi|260772102|ref|ZP_05881019.1| SSU ribosomal protein S3p (S3e) [Vibrio metschnikovii CIP 69.14]
 gi|260612969|gb|EEX38171.1| SSU ribosomal protein S3p (S3e) [Vibrio metschnikovii CIP 69.14]
          Length = 232

 Score =  228 bits (582), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   ++   L  D K+R+YL   L +A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNATWFANTKDFADNLDGDFKVRQYLTKELAKASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      ++++EV KPE++  L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRAAVAKIAGVPAQINISEVRKPELDGQLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYATSSAHTTYGVIGVKVWI 202


>gi|21672764|ref|NP_660831.1| 30S ribosomal protein S3 [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
 gi|25009194|sp|Q8K956|RS3_BUCAP RecName: Full=30S ribosomal protein S3
 gi|21623411|gb|AAM68042.1| 30S ribosomal protein S3 [Buchnera aphidicola str. Sg (Schizaphis
           graminum)]
          Length = 233

 Score =  228 bits (582), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 110/219 (50%), Positives = 155/219 (70%), Gaps = 1/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   ++   L  D K+R++L   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGMRLGIIKKWNSVWFANTKDFADHLDSDYKVRQFLMKKLVKASVSRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +Y+ARPG++IGKKG D+EK+R  ++ +T     ++++EV KPE++A L+++SI
Sbjct: 61  AKSIRVTIYTARPGIVIGKKGEDVEKLRINIAKITGVPAQINISEVRKPELDAKLVSESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKR+VQ+AMR GA G+KV  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRSVQNAMRQGAKGIKVEVSGRLGGAEIARREWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
           +IDY  + A T YG  G+KV++  + E+    STI   E
Sbjct: 181 NIDYSISEAHTTYGVIGVKVWI-FKGEILGGMSTIEKLE 218


>gi|114778818|ref|ZP_01453625.1| 30S ribosomal protein S3 [Mariprofundus ferrooxydans PV-1]
 gi|114550949|gb|EAU53513.1| 30S ribosomal protein S3 [Mariprofundus ferrooxydans PV-1]
          Length = 216

 Score =  228 bits (582), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI FR+GV   W S W+A    +GA L ED+K+R +++  LK AGV++I+IER 
Sbjct: 1   MGQKVNPIGFRVGVIRNWESVWYASDKNFGAQLREDIKLRRHVKERLKHAGVSRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ V+++RPG++IGKKG++I+ +R +L      E+ + + EV +PE  A L+A+++
Sbjct: 61  ADKIKVTVHTSRPGVVIGKKGSEIDAVRNELVREFGQEVQVFIVEVRRPEAEAQLVAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A Q+ERRV FRRAMKRAVQSAMR GA GV++  +GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AFQMERRVAFRRAMKRAVQSAMRMGAKGVRINCAGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            +DYG A A T YG  G+KV+V
Sbjct: 181 DVDYGFAEAHTTYGVIGVKVWV 202


>gi|300721371|ref|YP_003710642.1| 30S ribosomal subunit protein S3 [Xenorhabdus nematophila ATCC
           19061]
 gi|297627859|emb|CBJ88405.1| 30S ribosomal subunit protein S3 [Xenorhabdus nematophila ATCC
           19061]
          Length = 224

 Score =  228 bits (582), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 109/219 (49%), Positives = 154/219 (70%), Gaps = 1/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS W+A   E+   L  D K+R+YL   L +A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWYANTKEFADNLDSDFKVRQYLNKELVKASISRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RK ++++      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKAVADIAGVPAQINIAEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           + QLERRV+FRRAMKRAV +AMR GA G+K   SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 SSQLERRVMFRRAMKRAVHNAMRLGAKGIKEEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDY T+ A T YG  G+KV++  + E+    + +  AE
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI-FKGEILGGMAAVEQAE 218


>gi|254362068|ref|ZP_04978193.1| ribosomal protein S3 [Mannheimia haemolytica PHL213]
 gi|261493003|ref|ZP_05989545.1| ribosomal protein S3 [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261495177|ref|ZP_05991640.1| ribosomal protein S3 [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|153093624|gb|EDN74589.1| ribosomal protein S3 [Mannheimia haemolytica PHL213]
 gi|261309153|gb|EEY10393.1| ribosomal protein S3 [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311347|gb|EEY12508.1| ribosomal protein S3 [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 235

 Score =  228 bits (582), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 145/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNSTWFANTQDFADNLDGDFKVRKFLNKELANASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAKIAGVPAQINIAEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMK+AVQ+AM+ GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKKAVQNAMKLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A T YG  G+KV++
Sbjct: 181 DIDYSTAEAHTTYGVIGVKVWI 202


>gi|89076318|ref|ZP_01162659.1| 30S ribosomal protein S3 [Photobacterium sp. SKA34]
 gi|90581684|ref|ZP_01237472.1| 30S ribosomal protein S3 [Vibrio angustum S14]
 gi|89048022|gb|EAR53611.1| 30S ribosomal protein S3 [Photobacterium sp. SKA34]
 gi|90437099|gb|EAS62302.1| 30S ribosomal protein S3 [Vibrio angustum S14]
          Length = 229

 Score =  228 bits (581), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   E+   L  D K+R++L   L +A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNTTWFANSQEFADNLDGDFKVRQFLTKELAKASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++  L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRAAVAKIAGVPAQINIAEVRKPELDGQLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           + QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 SSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYATSSAHTQYGVIGVKVWI 202


>gi|120553658|ref|YP_958009.1| 30S ribosomal protein S3 [Marinobacter aquaeolei VT8]
 gi|152060872|sp|A1TYK3|RS3_MARAV RecName: Full=30S ribosomal protein S3
 gi|120323507|gb|ABM17822.1| SSU ribosomal protein S3P [Marinobacter aquaeolei VT8]
          Length = 227

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 150/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NP   RLGV    NS W+A   +Y   L  D+++RE+L   L +A V+KI+IER 
Sbjct: 1   MGHKVNPTGIRLGVIKEHNSVWYADKKDYAKNLLNDIQVREFLDKRLVKASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N RI +++ARPG++IGKKG D++++R+++S+M    +H+++ EV KP+++A L+AQ++
Sbjct: 61  AQNARITIHTARPGIVIGKKGEDVDRLRREVSDMMGVPVHINIEEVRKPDLDARLVAQNV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+K+   GRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 AGQLERRVMFRRAMKRAVQNAMRQGAKGIKIQVGGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A T YG  G+KV++
Sbjct: 181 DIDYATYEAHTTYGVIGVKVWI 202


>gi|260549834|ref|ZP_05824050.1| ribosomal protein S3 [Acinetobacter sp. RUH2624]
 gi|293610830|ref|ZP_06693130.1| 30S ribosomal protein S3 [Acinetobacter sp. SH024]
 gi|260407084|gb|EEX00561.1| ribosomal protein S3 [Acinetobacter sp. RUH2624]
 gi|292827174|gb|EFF85539.1| 30S ribosomal protein S3 [Acinetobacter sp. SH024]
          Length = 250

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 109/208 (52%), Positives = 153/208 (73%), Gaps = 1/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLGV    N+ W+A   +Y   L +DL++RE+L   LK A V+ ILIER 
Sbjct: 1   MGQKVHPIGIRLGVVKRHNANWYANPKQYAEYLLKDLQVREFLTKKLKNAMVSNILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ + +ARPG++IGKKG DIEK++++L+++      +S+NE+ +P+++A L+A++I
Sbjct: 61  SGAAKVTISTARPGIVIGKKGEDIEKLQRELTSIMGVPAQVSINEIDRPDLDARLVAEAI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV+FRRAMKRAVQ+ MR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLEKRVMFRRAMKRAVQNTMRAGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T  AET YG+ G+KV++  R E+
Sbjct: 181 DIDYATMRAETTYGTIGVKVWI-FRGEI 207


>gi|315633461|ref|ZP_07888751.1| 30S ribosomal protein S3 [Aggregatibacter segnis ATCC 33393]
 gi|315477503|gb|EFU68245.1| 30S ribosomal protein S3 [Aggregatibacter segnis ATCC 33393]
          Length = 235

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 109/225 (48%), Positives = 154/225 (68%), Gaps = 1/225 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W+S WFA   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVHPHGIRLGIVKPWSSTWFANTQDFADNLEGDFKVRQFLNKELANASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAKIAGVPAQINIAEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMK+AVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKKAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDY TA A T YG  G+KV++  + E+    + +   E +  +K
Sbjct: 181 DIDYNTAEAHTTYGVIGVKVWI-FKGEILGGMAALAQPEQQPADK 224


>gi|261250411|ref|ZP_05942986.1| SSU ribosomal protein S3p (S3e) [Vibrio orientalis CIP 102891]
 gi|260938980|gb|EEX94967.1| SSU ribosomal protein S3p (S3e) [Vibrio orientalis CIP 102891]
          Length = 232

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   ++   L  D K+R++L   LK+A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNATWFANTKDFADNLDGDFKVRQFLTSELKKASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+  SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRTAVAKIAGVPAQINIAEVRKPELDAQLVGDSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  GIK ++
Sbjct: 181 DIDYATSSAHTQYGVIGIKTWI 202


>gi|251793833|ref|YP_003008565.1| 30S ribosomal protein S3 [Aggregatibacter aphrophilus NJ8700]
 gi|247535232|gb|ACS98478.1| ribosomal protein S3 [Aggregatibacter aphrophilus NJ8700]
          Length = 235

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 109/225 (48%), Positives = 154/225 (68%), Gaps = 1/225 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W+S WFA   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVHPHGIRLGIVKPWSSTWFANTQDFANNLEGDFKVRQFLNKELANASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAKIAGVPAQINIAEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMK+AVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKKAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDY TA A T YG  G+KV++  + E+    + +   E +  +K
Sbjct: 181 DIDYNTAEAHTTYGVIGVKVWI-FKGEILGGMAALAQPEQQPADK 224


>gi|223936422|ref|ZP_03628334.1| ribosomal protein S3 [bacterium Ellin514]
 gi|223894940|gb|EEF61389.1| ribosomal protein S3 [bacterium Ellin514]
          Length = 228

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 109/210 (51%), Positives = 151/210 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK NPI  R+ VN  W S+W+A   E+G LL ED +IR+ L+  L+ A V +ILIER 
Sbjct: 1   MGQKSNPIGLRIAVNREWRSKWYAGKKEFGKLLTEDRQIRDLLKKKLESASVPRILIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
              CRI + +ARPG++IG+KG +I+K++++LS MT  EI++ + E+  PE++A L+A++I
Sbjct: 61  ATRCRITILTARPGVVIGRKGAEIDKLKEELSKMTGKEIYVDIMEIKTPELDAQLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK+A+Q+   FGA+G+K+  +GRL GAEL+R E Y  GRVPL TLRA
Sbjct: 121 ALQLERRVSFRRAMKKALQTTKDFGAEGIKLRCAGRLGGAELARVEQYHWGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            IDYG A A+T YG  G+K ++   +  SD
Sbjct: 181 DIDYGFAEAKTMYGKLGVKCWICKGETKSD 210


>gi|261866789|ref|YP_003254711.1| 30S ribosomal protein S3 [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|2500396|sp|P55827|RS3_ACTAC RecName: Full=30S ribosomal protein S3
 gi|1841328|dbj|BAA10953.1| ribosomal protein S3 [Actinobacillus actinomycetemcomitans]
 gi|261412121|gb|ACX81492.1| ribosomal protein S3 [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 235

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 109/225 (48%), Positives = 154/225 (68%), Gaps = 1/225 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W+S WFA   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVHPHGIRLGIVKPWSSTWFANTQDFADNLEGDFKVRQFLNKELANASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAKIAGVPAQINIAEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMK+AVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKKAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDY TA A T YG  G+KV++  + E+    + +   E +  +K
Sbjct: 181 DIDYNTAEAHTTYGVIGVKVWI-FKGEILGGMAALAQPEQQPTDK 224


>gi|304405610|ref|ZP_07387269.1| ribosomal protein S3 [Paenibacillus curdlanolyticus YK9]
 gi|304345649|gb|EFM11484.1| ribosomal protein S3 [Paenibacillus curdlanolyticus YK9]
          Length = 221

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 110/226 (48%), Positives = 160/226 (70%), Gaps = 9/226 (3%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+G+   W S+WFA G ++G LL ED+KIREYL+  LK A V++I IER 
Sbjct: 1   MGQKVNPVGLRIGIIRDWESKWFA-GKDFGDLLIEDVKIREYLKNKLKDAAVSRIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSE-IHLSVNEVPKPEINATLIAQS 119
                + + +A+PG++IGK G+++E +R +L+ +TN + +H+++ E+   +++A L+A+S
Sbjct: 60  ANRVNVTINTAKPGMVIGKGGSEVENLRNQLAKITNGKKVHINITEIKHADLDAILVAES 119

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IAQQLERR  FRRA+K+A+Q  MR GA G+K   SGRL GAE++RTE Y EG VPL TLR
Sbjct: 120 IAQQLERRTSFRRALKQAIQRTMRSGAKGIKTSVSGRLGGAEIARTEGYSEGTVPLHTLR 179

Query: 180 AHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
           A IDYGTA A T YG  G+KV++  R E+      +PAA+ +  ++
Sbjct: 180 ADIDYGTAEAHTTYGRIGVKVWI-YRGEI------LPAAKKKAAQE 218


>gi|261838632|gb|ACX98398.1| ribosomal protein S3 [Helicobacter pylori 51]
          Length = 234

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N  W SRWF       + + ED KIR++L+  L  AGV++I+IER 
Sbjct: 1   MGQKVNPVGLRLGINRNWTSRWFPSTRTAPSNIDEDNKIRKFLKKELYYAGVSEIVIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPGLIIGKKG DIEK+++ L  +   E+ +++ EV +P+ ++ L A+++
Sbjct: 61  AKKLRVTVVAARPGLIIGKKGVDIEKVKEGLKTLIKKEVSINIKEVKRPQADSQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q+A++ GA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 ATQLEKRVAFRRAMKKVMQAALKSGAKGIKVRVSGRLAGAEIARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAMTVYGIIGVKVWI 202


>gi|313681325|ref|YP_004059063.1| SSU ribosomal protein s3p [Sulfuricurvum kujiense DSM 16994]
 gi|313154185|gb|ADR32863.1| SSU ribosomal protein S3P [Sulfuricurvum kujiense DSM 16994]
          Length = 236

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 110/202 (54%), Positives = 143/202 (70%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K+NPI  RLG+N  W SRWF         L ED KIR YL+  L  AGV+ I+IERT
Sbjct: 1   MGHKVNPIGLRLGINRNWESRWFPNFKTAAVSLGEDHKIRTYLKKELYYAGVSNIVIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ + +ARPG+IIGKKG+DIEKI++ L N+    + +++ E  K + +A L+A+++
Sbjct: 61  AKRLRVTIIAARPGIIIGKKGSDIEKIKESLQNLIGKPVAVNIKEEKKAQASAQLVAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q+A R GA G+KV  +GRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 ATQLEKRVAFRRAMKKVMQNAQRAGAKGIKVSVAGRLGGAEIARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  GIKV++
Sbjct: 181 KIDYGFAEAHTTYGVIGIKVWI 202


>gi|138893791|ref|YP_001124244.1| 30S ribosomal protein S3 [Geobacillus thermodenitrificans NG80-2]
 gi|196251018|ref|ZP_03149700.1| ribosomal protein S3 [Geobacillus sp. G11MC16]
 gi|152060863|sp|A4IJJ5|RS3_GEOTN RecName: Full=30S ribosomal protein S3
 gi|134265304|gb|ABO65499.1| Ribosomal protein S3 [Geobacillus thermodenitrificans NG80-2]
 gi|196209490|gb|EDY04267.1| ribosomal protein S3 [Geobacillus sp. G11MC16]
          Length = 218

 Score =  228 bits (581), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 149/202 (73%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  R+G+   W SRW+A   +Y  LLHEDLK+REY+   L+ A V+++ IER 
Sbjct: 1   MGQKVNPIGLRIGIIRDWESRWYAE-KDYADLLHEDLKVREYINKRLQDAAVSRVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +++A+PG++IGK G+++E +RK L+ +T   +H+++ E+ KP+++A L+A++I
Sbjct: 60  ANRVNVTIHTAKPGMVIGKGGSEVEALRKALAQLTGKRVHINIVEIKKPDLDAKLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRA K+A+Q AMR GA G+K + SGRL GA+++R+E Y EG VPL TLRA
Sbjct: 120 ARQLENRVSFRRAQKQAIQRAMRAGAKGIKTMVSGRLGGADIARSEHYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A+T YG  G+KV++
Sbjct: 180 DIDYATAEADTTYGKIGVKVWI 201


>gi|116515253|ref|YP_802882.1| 30S ribosomal protein S3 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285351|sp|Q057B0|RS3_BUCCC RecName: Full=30S ribosomal protein S3
 gi|116257107|gb|ABJ90789.1| 30S ribosomal protein S3 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 235

 Score =  228 bits (580), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 105/210 (50%), Positives = 154/210 (73%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+  +WNS WFA   E+   L  D K+R Y++  L +A V+K++IER 
Sbjct: 1   MGQKVHPNGMRLGIIKSWNSIWFASKKEFSNYLDSDFKVRSYVKKKLIKASVSKVIIERL 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            KN R+ +Y+ARPG++IGKKG D+EK+R +++ +T     ++++E+ KPE++A L+A +I
Sbjct: 61  SKNIRVTIYTARPGIVIGKKGEDVEKLRIEIAKITGVPAQVNISEIRKPELDAKLVADNI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           + QLERRV+FRRA+KR+VQ+AMR GA G+K+  SGRL G E++R E Y EGRVPL TLRA
Sbjct: 121 SSQLERRVMFRRAIKRSVQNAMRQGAKGIKIEVSGRLGGVEIARREWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
           +I+Y T+ A T YG  G+KV++  + E+ D
Sbjct: 181 NIEYNTSEAHTTYGIIGVKVWI-FKGEILD 209


>gi|77359122|ref|YP_338697.1| 30S ribosomal protein S3 [Pseudoalteromonas haloplanktis TAC125]
 gi|91207832|sp|Q3IF19|RS3_PSEHT RecName: Full=30S ribosomal protein S3
 gi|76874033|emb|CAI85254.1| 30S ribosomal subunit protein S3 [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 233

 Score =  228 bits (580), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG++  W S W+A   ++ A L  D K+R +L   LK A V+KI+IER 
Sbjct: 1   MGQKVHPTGIRLGISKPWVSTWYASSKDFSAQLFGDHKVRTFLTKELKTASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R+ ++ +      ++++EV KPE++A L+A  I
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRQAVTKIAGVPAQINISEVRKPELDAQLVADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKR+VQ+AMR G+ G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRSVQNAMRIGSKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYATSEALTTYGIIGVKVWI 202


>gi|28897037|ref|NP_796642.1| 30S ribosomal protein S3 [Vibrio parahaemolyticus RIMD 2210633]
 gi|260363909|ref|ZP_05776655.1| ribosomal protein S3 [Vibrio parahaemolyticus K5030]
 gi|260877955|ref|ZP_05890310.1| ribosomal protein S3 [Vibrio parahaemolyticus AN-5034]
 gi|260896467|ref|ZP_05904963.1| ribosomal protein S3 [Vibrio parahaemolyticus Peru-466]
 gi|262392510|ref|YP_003284364.1| 30S ribosomal protein S3p [Vibrio sp. Ex25]
 gi|269964728|ref|ZP_06178966.1| 30S ribosomal protein S3 [Vibrio alginolyticus 40B]
 gi|31340380|sp|Q87T07|RS3_VIBPA RecName: Full=30S ribosomal protein S3
 gi|28805245|dbj|BAC58526.1| ribosomal protein S3 [Vibrio parahaemolyticus RIMD 2210633]
 gi|262336104|gb|ACY49899.1| SSU ribosomal protein S3p (S3e) [Vibrio sp. Ex25]
 gi|269830627|gb|EEZ84848.1| 30S ribosomal protein S3 [Vibrio alginolyticus 40B]
 gi|308087268|gb|EFO36963.1| ribosomal protein S3 [Vibrio parahaemolyticus Peru-466]
 gi|308090018|gb|EFO39713.1| ribosomal protein S3 [Vibrio parahaemolyticus AN-5034]
 gi|308111810|gb|EFO49350.1| ribosomal protein S3 [Vibrio parahaemolyticus K5030]
 gi|328471840|gb|EGF42717.1| 30S ribosomal protein S3 [Vibrio parahaemolyticus 10329]
          Length = 232

 Score =  228 bits (580), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   ++   L  D K+R++L   LK+A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNATWFANTKDFADNLDGDFKVRQFLTSELKKASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+  SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRAAVAKIAGVPAQINIAEVRKPELDAQLVGDSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  GIK ++
Sbjct: 181 DIDYATSSAHTQYGVIGIKTWI 202


>gi|317153952|ref|YP_004122000.1| 30S ribosomal protein S3 [Desulfovibrio aespoeensis Aspo-2]
 gi|316944203|gb|ADU63254.1| ribosomal protein S3 [Desulfovibrio aespoeensis Aspo-2]
          Length = 213

 Score =  228 bits (580), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 108/212 (50%), Positives = 155/212 (73%), Gaps = 2/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG N  W SRW+++  +Y A + +D +IR++++  L QAG+A++ IER 
Sbjct: 1   MGQKVHPYGFRLGYNKNWLSRWYSK-KDYPAFVLQDDQIRKFVKKKLFQAGIARLEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+I+++ARPG++IG+KG +IEK+R +L N   +E  + VNE+ +PE+ A L+A+SI
Sbjct: 60  GGKIRLIIHTARPGIVIGRKGVEIEKLRDELRNKYQTEFTIEVNEIRRPEVEAQLVAESI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR+ FRRAMKR V  A +FGA+G+KV  +GRL GAE++R E Y +GRVPL TLRA
Sbjct: 120 AQQLERRIAFRRAMKRTVGLARKFGAEGIKVACAGRLAGAEIARGEWYRDGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYG A A T YG  G+KV++  + E+ D +
Sbjct: 180 DIDYGFAEAHTTYGVIGVKVWI-FKGEILDKE 210


>gi|167629473|ref|YP_001679972.1| 30S ribosomal protein s3 [Heliobacterium modesticaldum Ice1]
 gi|167592213|gb|ABZ83961.1| 30S ribosomal protein s3 [Heliobacterium modesticaldum Ice1]
          Length = 251

 Score =  228 bits (580), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 106/224 (47%), Positives = 159/224 (70%), Gaps = 8/224 (3%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   R+G+   W++RWFA G  Y  LLHEDLKIR++++  L  AG+ +I IER 
Sbjct: 1   MGQKVNPKGLRIGIIKDWDARWFA-GKNYAELLHEDLKIRKFVKSKLYAAGIPRIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ +++A+PG++IG+ G ++E +RK+L  MT   +++++ EV KPE++A L+A+++
Sbjct: 60  ANRVKVTIHTAKPGIVIGRGGAEVENLRKELEKMTGRAVNINIAEVKKPELDAQLVAENV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+R  FRRAMK++V   MR GA+G+K++ SGRL GAE++RTE Y EG+VPL TLRA
Sbjct: 120 AAQLEKRTSFRRAMKQSVGRTMRLGAEGIKIMVSGRLGGAEIARTEWYNEGKVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVE 224
            IDYG A A T YG  G+KV++  + E+      +P A++R  E
Sbjct: 180 DIDYGFAEARTTYGIIGVKVWI-YKGEI------LPGAKNRTGE 216


>gi|227499189|ref|ZP_03929324.1| 30S ribosomal protein S3P [Acidaminococcus sp. D21]
 gi|226904636|gb|EEH90554.1| 30S ribosomal protein S3P [Acidaminococcus sp. D21]
          Length = 227

 Score =  228 bits (580), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 154/202 (76%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP  FR+GV   W+S+WFA   +Y   L ED+KIRE+++    QAG++++ IERT
Sbjct: 1   MGQKVNPHGFRVGVIDDWDSKWFA-DKDYQKYLLEDIKIREFIKDKQFQAGISRVAIERT 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI +Y+A+PG++IG++G++IE ++K L+ +T+S++ +++ EV  P+++ATL+A+++
Sbjct: 60  EQKMRISIYTAKPGIVIGRQGSNIELLKKDLAKLTDSKLDINIIEVKSPDMDATLVAENV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK+ V   MR GA G+K+  SGRL GAE++RTE Y +G +PL TLRA
Sbjct: 120 AGQLERRIAFRRAMKQCVGRTMRLGAKGIKITCSGRLGGAEIARTESYRDGSIPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
           +IDYGTA A T YG  GIKV++
Sbjct: 180 NIDYGTAEAHTTYGRIGIKVWI 201


>gi|23097580|ref|NP_691046.1| 30S ribosomal protein S3 [Oceanobacillus iheyensis HTE831]
 gi|27734493|sp|P59182|RS3_OCEIH RecName: Full=30S ribosomal protein S3
 gi|22775803|dbj|BAC12081.1| 30S ribosomal protein S3 [Oceanobacillus iheyensis HTE831]
          Length = 213

 Score =  228 bits (580), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 108/208 (51%), Positives = 149/208 (71%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP   R+G+   W S+W+A G +Y  LLHED+KIREYL+  L  A V+ I IER 
Sbjct: 1   MGQKINPTGLRVGIIKDWESKWYA-GKDYADLLHEDIKIREYLENRLSTAAVSSIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++ +PG++IGK G+++E +RK L+N+T   +H+++ E+ K +++ATL+A SI
Sbjct: 60  ANRVNITIHTGKPGMVIGKGGSEVEALRKSLNNLTGKRVHINIVEIKKVDLDATLVADSI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE R+ FRRA K+A+Q AMR GA G+K   SGRL GA+++R E Y EG VPL TLRA
Sbjct: 120 ARQLENRISFRRAQKQAIQRAMRGGAKGIKTQVSGRLGGADIARAEHYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDYGTA A+T YG  G+KV++  R EV
Sbjct: 180 DIDYGTAEADTTYGKLGVKVWI-YRGEV 206


>gi|326793564|ref|YP_004311384.1| ribosomal protein S3 [Marinomonas mediterranea MMB-1]
 gi|326544328|gb|ADZ89548.1| ribosomal protein S3 [Marinomonas mediterranea MMB-1]
          Length = 226

 Score =  228 bits (580), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+     S W+A    Y  LL  DL++R+YL+  L QA V++I I+R 
Sbjct: 1   MGQKVHPTGIRLGIVKDHTSTWYANNQNYSKLLLNDLQVRKYLEEKLVQASVSRIEIQRP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI +++ARPG++IGKKG D+EK+R  +S M    +H+++ E+ KPE+++ L+AQ+I
Sbjct: 61  AQTARITIHTARPGIVIGKKGEDVEKLRNAVSKMMGVPVHINIEEIRKPELDSKLVAQNI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AGQLERRVMFRRAMKRAVQNAMRAGAKGIKVQVSGRLGGAEIARAEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A T YG  G+KV++
Sbjct: 181 DIDYATYEASTTYGIIGVKVWI 202


>gi|284049251|ref|YP_003399590.1| ribosomal protein S3 [Acidaminococcus fermentans DSM 20731]
 gi|283953472|gb|ADB48275.1| ribosomal protein S3 [Acidaminococcus fermentans DSM 20731]
          Length = 225

 Score =  228 bits (580), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 155/202 (76%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP  FR+GV   W+S+WFA   +Y   L ED+KIR++++    QAG++++ IERT
Sbjct: 1   MGQKVNPHGFRVGVIADWDSKWFA-DKDYQKNLLEDIKIRDFIKDKQFQAGISRVTIERT 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI +Y+A+PG++IG++G++IE ++K L+ MT+S++ +++ EV +P+++ATL+A+++
Sbjct: 60  EQKMRISIYTAKPGIVIGRQGSNIELLKKDLAKMTDSKLDINIIEVKQPDMDATLVAENV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK+ V   MR GA G+K+  +GRL GAE++RTE Y +G +PL TLRA
Sbjct: 120 ASQLERRIAFRRAMKQCVGRTMRLGAKGIKIQCAGRLGGAEIARTESYRDGSIPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
           +IDYGTA A T YG  GIKV++
Sbjct: 180 NIDYGTAEAHTTYGRIGIKVWI 201


>gi|152978147|ref|YP_001343776.1| 30S ribosomal protein S3 [Actinobacillus succinogenes 130Z]
 gi|189044986|sp|A6VLJ4|RS3_ACTSZ RecName: Full=30S ribosomal protein S3
 gi|150839870|gb|ABR73841.1| ribosomal protein S3 [Actinobacillus succinogenes 130Z]
          Length = 235

 Score =  228 bits (580), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 145/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W+S WFA   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVHPHGIRLGIVKPWSSTWFANTQDFADNLDGDFKVRKFLNKELMNASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRTAVAKIAGVPAQINIAEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A T YG  G+KV++
Sbjct: 181 DIDYNTAEAHTTYGVIGVKVWI 202


>gi|78357294|ref|YP_388743.1| 30S ribosomal protein S3 [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|91207653|sp|Q30Z48|RS3_DESDG RecName: Full=30S ribosomal protein S3
 gi|78219699|gb|ABB39048.1| SSU ribosomal protein S3P [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 213

 Score =  228 bits (580), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 109/212 (51%), Positives = 152/212 (71%), Gaps = 2/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG N  W SRWF++  EY + + ED  IR+Y++  L  AG++KI IER 
Sbjct: 1   MGQKVHPFGFRLGYNKNWQSRWFSK-KEYASFVFEDHNIRKYVKKTLYHAGLSKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+I+ +ARPG++IG+KG +IEK+R  L    + E  + VNE+ +PE +A L+A++I
Sbjct: 60  GGKVRLILSTARPGIVIGRKGVEIEKLRADLRRKFSREFSIEVNEIRRPETDAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMKR V  + +FGA+G+KV  +GRL GAE++R+E Y +GRVPLQTLRA
Sbjct: 120 AMQLERRVAFRRAMKRTVSMSRKFGAEGIKVACAGRLAGAEIARSEWYRDGRVPLQTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYG A A T YG  G+KV++  + E+ D++
Sbjct: 180 DIDYGYAEAHTTYGIIGVKVWI-FKGEILDNE 210


>gi|88860953|ref|ZP_01135589.1| 30S ribosomal subunit protein S3 [Pseudoalteromonas tunicata D2]
 gi|88817166|gb|EAR26985.1| 30S ribosomal subunit protein S3 [Pseudoalteromonas tunicata D2]
          Length = 235

 Score =  228 bits (580), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG++  W S W+A   ++  +L  D K+R +L   LK A V+KI+IER 
Sbjct: 1   MGQKVHPTGIRLGISKPWVSTWYANTKDFPEMLFGDHKVRTFLTKELKAASVSKIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  +S +      ++++E+ KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRLVVSKIAGVPAQINISEIRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRIGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYSTSEALTTYGIIGVKVWI 202


>gi|295694843|ref|YP_003588081.1| ribosomal protein S3 [Bacillus tusciae DSM 2912]
 gi|295410445|gb|ADG04937.1| ribosomal protein S3 [Bacillus tusciae DSM 2912]
          Length = 226

 Score =  228 bits (580), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 112/227 (49%), Positives = 154/227 (67%), Gaps = 7/227 (3%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P+  R+G+   W S+W+A   EYG LL ED+KIR+Y+   LK A V+ + IER 
Sbjct: 1   MGQKVSPVGLRIGIIRDWESKWYAGKKEYGKLLLEDVKIRDYIFKRLKDAAVSAVEIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I V++A+PG++IGK GT++E +R  L++MT   +H+++ EV  PE++A L+A+++
Sbjct: 61  ANRVNITVHTAKPGMVIGKGGTEVEALRAALAHMTGKRVHINIAEVKNPELSAKLVAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK+A+Q  MR GA GVK+  SGRL GAE++RTE Y EG VPL TLRA
Sbjct: 121 ASQLERRVAFRRAMKQAIQRTMRAGAKGVKIQVSGRLAGAEIARTEGYSEGTVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEKDS 227
            IDY  A A T YG  G+KV++  R E+      +P    R  EK S
Sbjct: 181 DIDYALAEAHTTYGRIGVKVWI-YRGEI------LPVKGDRNAEKSS 220


>gi|57504692|ref|ZP_00370770.1| ribosomal protein S3 [Campylobacter coli RM2228]
 gi|305432604|ref|ZP_07401765.1| 30S ribosomal protein S3 [Campylobacter coli JV20]
 gi|57019461|gb|EAL56156.1| ribosomal protein S3 [Campylobacter coli RM2228]
 gi|304444315|gb|EFM36967.1| 30S ribosomal protein S3 [Campylobacter coli JV20]
          Length = 233

 Score =  228 bits (580), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 110/228 (48%), Positives = 156/228 (68%), Gaps = 8/228 (3%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF   +     + ED KIR +L+  L  AG+++IL+ERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLKRKLYYAGISQILVERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPG+IIGKKG+D++ +RK+L ++   ++++++ E  K   +A L A+S+
Sbjct: 61  AKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNINIKEERKAGASAQLAAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+R+ FRRAMK+ +Q A + GA G+KV  SGRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 ATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV-------SDSDSTIPAAEHR 221
            IDYG A A T YG+ G+KV++  + EV         ++ + PA + R
Sbjct: 181 KIDYGFAEARTTYGNIGVKVWI-FKGEVLQKGLQTEKTEESAPAKKQR 227


>gi|317178052|dbj|BAJ55841.1| 30S ribosomal protein S3 [Helicobacter pylori F16]
          Length = 234

 Score =  228 bits (580), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N  W SRWF       + + ED KIR++L+  L  AGV++I+IER 
Sbjct: 1   MGQKVNPVGLRLGINRNWTSRWFPSTRTAPSNIDEDNKIRKFLKKELYYAGVSEIVIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPGLIIGKKG DIEK+++ L  +   E+ +++ EV +P+ +A L A+++
Sbjct: 61  AKKLRVTVVAARPGLIIGKKGVDIEKVKEGLKTLIKKEVSINIKEVKRPQADAQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q+A++ GA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 AIQLEKRVAFRRAMKKVMQAALKSGAKGIKVHVSGRLAGAEIARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAMTVYGIIGVKVWI 202


>gi|317126867|ref|YP_004093149.1| ribosomal protein S3 [Bacillus cellulosilyticus DSM 2522]
 gi|315471815|gb|ADU28418.1| ribosomal protein S3 [Bacillus cellulosilyticus DSM 2522]
          Length = 219

 Score =  228 bits (580), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 104/214 (48%), Positives = 152/214 (71%), Gaps = 2/214 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   R+G+   W S+W+A   +Y  LLHED+KIREYL+  LK+A ++ + IER 
Sbjct: 1   MGQKVNPTGLRVGIIKDWESKWYA-DKDYADLLHEDIKIREYLEKRLKEASLSTVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +Y+A+PG++IGK G+++E +RK L+ +T   +H+++NEV  P+++A L+A ++
Sbjct: 60  ANRVNVTIYTAKPGMVIGKGGSEVEALRKALNQLTGKRVHININEVKYPDMDARLVADNV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE R+ FRRAMK+ +Q  MR GA G+K   SGRL GA+++R+E Y EG VPL TLRA
Sbjct: 120 ARQLENRISFRRAMKQVIQRTMRSGAKGIKTEVSGRLGGADIARSESYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDST 214
            IDYGTA A+T YG  G+KV++  R EV  +  T
Sbjct: 180 DIDYGTAEADTTYGKLGVKVWI-YRGEVLPTKGT 212


>gi|78044912|ref|YP_361112.1| 30S ribosomal protein S3 [Carboxydothermus hydrogenoformans Z-2901]
 gi|91207645|sp|Q3A9S2|RS3_CARHZ RecName: Full=30S ribosomal protein S3
 gi|77997027|gb|ABB15926.1| ribosomal protein S3 [Carboxydothermus hydrogenoformans Z-2901]
          Length = 222

 Score =  228 bits (580), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 151/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   R+G+   W+++WFA    Y  LLHEDLKIR+Y++    QAG+++I+IER 
Sbjct: 1   MGQKVHPKGLRIGIIKDWDAKWFADKKHYQELLHEDLKIRKYIKTKFYQAGISRIVIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ +++ARPG++IGK GT+IE +RK+L  MT  +I++++ E+  PEI+A L+A++I
Sbjct: 61  SNRVKVTIHTARPGMVIGKGGTEIEVLRKELEKMTGKQININIAEIKVPEIDAQLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A Q+E+R+ ++RAMK+AV  A++ GA G+KV  SGRL GAE++R+E Y EG+VPL TLRA
Sbjct: 121 AAQIEKRISYKRAMKQAVSRALKMGAQGIKVACSGRLAGAEIARSEWYSEGKVPLTTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 DIDYGFAEALTTYGKIGVKVWI 202


>gi|27364209|ref|NP_759737.1| 30S ribosomal protein S3 [Vibrio vulnificus CMCP6]
 gi|37678565|ref|NP_933174.1| 30S ribosomal protein S3 [Vibrio vulnificus YJ016]
 gi|320157595|ref|YP_004189974.1| 30S ribosomal protein S3p (S3e) [Vibrio vulnificus MO6-24/O]
 gi|29427440|sp|Q8DE45|RS3_VIBVU RecName: Full=30S ribosomal protein S3
 gi|61215668|sp|Q7MPI2|RS3_VIBVY RecName: Full=30S ribosomal protein S3
 gi|27360327|gb|AAO09264.1| ribosomal protein S3 [Vibrio vulnificus CMCP6]
 gi|37197305|dbj|BAC93145.1| ribosomal protein S3 [Vibrio vulnificus YJ016]
 gi|319932907|gb|ADV87771.1| SSU ribosomal protein S3p (S3e) [Vibrio vulnificus MO6-24/O]
          Length = 233

 Score =  228 bits (580), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   ++   L  D K+R++L   L +A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNATWFANTKDFADNLDGDFKVRQFLTKELSKASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+  SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRTAVAKIAGVPAQINIAEVRKPELDAQLVGDSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  GIKV++
Sbjct: 181 DIDYATSSAHTTYGVIGIKVWI 202


>gi|149192563|ref|ZP_01870730.1| 30S ribosomal protein S3 [Vibrio shilonii AK1]
 gi|148833604|gb|EDL50674.1| 30S ribosomal protein S3 [Vibrio shilonii AK1]
          Length = 232

 Score =  228 bits (580), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   E+   L  D K+R++L   L +A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNATWFANTKEFADNLDGDFKVRQFLTKELAKASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++  L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRTAVAKIAGVPAQINIAEVRKPELDGQLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  GIKV++
Sbjct: 181 DIDYATSSAHTQYGVIGIKVWI 202


>gi|15645926|ref|NP_208105.1| 30S ribosomal protein S3 [Helicobacter pylori 26695]
 gi|2500397|sp|P56010|RS3_HELPY RecName: Full=30S ribosomal protein S3
 gi|2314475|gb|AAD08352.1| ribosomal protein S3 (rps3) [Helicobacter pylori 26695]
          Length = 234

 Score =  228 bits (580), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 145/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N  W SRWF       + + ED KIR++L+  L  AGV++I+IER 
Sbjct: 1   MGQKVNPVGLRLGINRNWTSRWFPSARTAPSNIDEDNKIRKFLKKELYYAGVSEIVIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPGLIIGKKG DIEK++  L  +   E+ +++ EV  P+ +A L A+++
Sbjct: 61  AKKLRVTVVAARPGLIIGKKGVDIEKVKDGLKTLIKKEVSINIKEVKHPQADAQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q+A++ GA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 ATQLEKRVAFRRAMKKVMQAALKSGAKGIKVCVSGRLAGAEIARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAMTVYGIIGVKVWI 202


>gi|262280219|ref|ZP_06058003.1| ribosomal protein S3 [Acinetobacter calcoaceticus RUH2202]
 gi|262257997|gb|EEY76731.1| ribosomal protein S3 [Acinetobacter calcoaceticus RUH2202]
          Length = 250

 Score =  228 bits (580), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 108/208 (51%), Positives = 153/208 (73%), Gaps = 1/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLGV    N+ W+A   +Y   L +DL++RE+L   LK A ++ ILIER 
Sbjct: 1   MGQKVHPIGIRLGVVKRHNANWYASPKQYAEYLLKDLQVREFLNKKLKNAMISNILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ + +ARPG++IGKKG DIEK++++L+++      +S+NE+ +P+++A L+A++I
Sbjct: 61  SGAAKVTISTARPGIVIGKKGEDIEKLQRELTSIMGVPAQVSINEIDRPDLDARLVAEAI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV+FRRAMKRAVQ+ MR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLEKRVMFRRAMKRAVQNTMRAGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T  AET YG+ G+KV++  R E+
Sbjct: 181 DIDYATVRAETTYGTIGVKVWI-FRGEI 207


>gi|311087404|gb|ADP67484.1| 30S ribosomal protein S3 [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 233

 Score =  228 bits (580), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 149/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   ++   L  D K+R++L   L++A +++I+IER 
Sbjct: 1   MGQKVHPNGMRLGIIKKWNSVWFANTKDFADHLDSDYKVRQFLMKTLEKASISRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +Y+ARPG++IGKKG D+EK+R  ++ +T   + ++++EV KPE++A L++ SI
Sbjct: 61  AKSIRVTIYTARPGIVIGKKGEDVEKLRISIAKITRVPVQINISEVRKPELDAKLVSDSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKR+VQ+AMR GA G+KV  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRSVQNAMRQGAKGIKVEVSGRLGGAEIARREWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
           +IDY  + A T YG  G+KV++
Sbjct: 181 NIDYSISEAHTTYGVIGVKVWI 202


>gi|293391701|ref|ZP_06636035.1| ribosomal protein S3 [Aggregatibacter actinomycetemcomitans D7S-1]
 gi|290952235|gb|EFE02354.1| ribosomal protein S3 [Aggregatibacter actinomycetemcomitans D7S-1]
          Length = 235

 Score =  228 bits (580), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 109/225 (48%), Positives = 154/225 (68%), Gaps = 1/225 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W+S WFA   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVHPHGIRLGIVKPWSSTWFANTQDFADNLEGDFKVRKFLNKELANASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAKIAGVPAQINIAEVKKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMK+AVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKKAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRVVEK 225
            IDY TA A T YG  G+KV++  + E+    + +   E +  +K
Sbjct: 181 DIDYNTAEAHTTYGVIGVKVWI-FKGEILGGMAALTQPEQQPADK 224


>gi|15642585|ref|NP_232218.1| 30S ribosomal protein S3 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121730407|ref|ZP_01682752.1| ribosomal protein S3 [Vibrio cholerae V52]
 gi|147673134|ref|YP_001218084.1| 30S ribosomal protein S3 [Vibrio cholerae O395]
 gi|153217580|ref|ZP_01951261.1| ribosomal protein S3 [Vibrio cholerae 1587]
 gi|153827402|ref|ZP_01980069.1| ribosomal protein S3 [Vibrio cholerae MZO-2]
 gi|227082707|ref|YP_002811258.1| ribosomal protein S3 [Vibrio cholerae M66-2]
 gi|229507358|ref|ZP_04396863.1| SSU ribosomal protein S3p (S3e) [Vibrio cholerae BX 330286]
 gi|229509719|ref|ZP_04399200.1| SSU ribosomal protein S3p (S3e) [Vibrio cholerae B33]
 gi|229513513|ref|ZP_04402977.1| SSU ribosomal protein S3p (S3e) [Vibrio cholerae TMA 21]
 gi|229516843|ref|ZP_04406289.1| SSU ribosomal protein S3p (S3e) [Vibrio cholerae RC9]
 gi|229521656|ref|ZP_04411074.1| SSU ribosomal protein S3p (S3e) [Vibrio cholerae TM 11079-80]
 gi|229524571|ref|ZP_04413976.1| SSU ribosomal protein S3p (S3e) [Vibrio cholerae bv. albensis
           VL426]
 gi|229527480|ref|ZP_04416872.1| SSU ribosomal protein S3p (S3e) [Vibrio cholerae 12129(1)]
 gi|229606864|ref|YP_002877512.1| 30S ribosomal protein S3 [Vibrio cholerae MJ-1236]
 gi|254292184|ref|ZP_04962954.1| ribosomal protein S3 [Vibrio cholerae AM-19226]
 gi|254851130|ref|ZP_05240480.1| 30S ribosomal protein S3 [Vibrio cholerae MO10]
 gi|255744441|ref|ZP_05418393.1| SSU ribosomal protein S3p (S3e) [Vibrio cholera CIRS 101]
 gi|258622721|ref|ZP_05717739.1| 30S ribosomal protein S3 [Vibrio mimicus VM573]
 gi|258625746|ref|ZP_05720625.1| 30S ribosomal protein S3 [Vibrio mimicus VM603]
 gi|262166611|ref|ZP_06034348.1| SSU ribosomal protein S3p (S3e) [Vibrio mimicus VM223]
 gi|262170473|ref|ZP_06038151.1| SSU ribosomal protein S3p (S3e) [Vibrio mimicus MB-451]
 gi|297581432|ref|ZP_06943355.1| ribosomal protein S3 [Vibrio cholerae RC385]
 gi|27734537|sp|Q9KNZ0|RS3_VIBCH RecName: Full=30S ribosomal protein S3
 gi|189045346|sp|A5F543|RS3_VIBC3 RecName: Full=30S ribosomal protein S3
 gi|254764556|sp|C3LRQ2|RS3_VIBCM RecName: Full=30S ribosomal protein S3
 gi|9657177|gb|AAF95731.1| ribosomal protein S3 [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121627841|gb|EAX60437.1| ribosomal protein S3 [Vibrio cholerae V52]
 gi|124113468|gb|EAY32288.1| ribosomal protein S3 [Vibrio cholerae 1587]
 gi|146315017|gb|ABQ19556.1| ribosomal protein S3 [Vibrio cholerae O395]
 gi|149738675|gb|EDM53017.1| ribosomal protein S3 [Vibrio cholerae MZO-2]
 gi|150421913|gb|EDN13890.1| ribosomal protein S3 [Vibrio cholerae AM-19226]
 gi|227010595|gb|ACP06807.1| ribosomal protein S3 [Vibrio cholerae M66-2]
 gi|227014479|gb|ACP10689.1| ribosomal protein S3 [Vibrio cholerae O395]
 gi|229335112|gb|EEO00597.1| SSU ribosomal protein S3p (S3e) [Vibrio cholerae 12129(1)]
 gi|229338152|gb|EEO03169.1| SSU ribosomal protein S3p (S3e) [Vibrio cholerae bv. albensis
           VL426]
 gi|229341250|gb|EEO06254.1| SSU ribosomal protein S3p (S3e) [Vibrio cholerae TM 11079-80]
 gi|229345906|gb|EEO10878.1| SSU ribosomal protein S3p (S3e) [Vibrio cholerae RC9]
 gi|229349390|gb|EEO14346.1| SSU ribosomal protein S3p (S3e) [Vibrio cholerae TMA 21]
 gi|229353193|gb|EEO18132.1| SSU ribosomal protein S3p (S3e) [Vibrio cholerae B33]
 gi|229354863|gb|EEO19784.1| SSU ribosomal protein S3p (S3e) [Vibrio cholerae BX 330286]
 gi|229369519|gb|ACQ59942.1| SSU ribosomal protein S3p (S3e) [Vibrio cholerae MJ-1236]
 gi|254846835|gb|EET25249.1| 30S ribosomal protein S3 [Vibrio cholerae MO10]
 gi|255737966|gb|EET93359.1| SSU ribosomal protein S3p (S3e) [Vibrio cholera CIRS 101]
 gi|258581984|gb|EEW06854.1| 30S ribosomal protein S3 [Vibrio mimicus VM603]
 gi|258584909|gb|EEW09640.1| 30S ribosomal protein S3 [Vibrio mimicus VM573]
 gi|261891549|gb|EEY37535.1| SSU ribosomal protein S3p (S3e) [Vibrio mimicus MB-451]
 gi|262026327|gb|EEY44995.1| SSU ribosomal protein S3p (S3e) [Vibrio mimicus VM223]
 gi|297534270|gb|EFH73108.1| ribosomal protein S3 [Vibrio cholerae RC385]
 gi|327485072|gb|AEA79479.1| SSU ribosomal protein S3p (S3e) [Vibrio cholerae LMA3894-4]
          Length = 233

 Score =  228 bits (580), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 145/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   ++   L  D K+R+YL   L  A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNATWFANTKDFADNLDGDFKVRQYLSKELANASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++  L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRAAVAKIAGVPAQINIAEVRKPELDGQLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYATSSAHTTYGVIGVKVWI 202


>gi|71902239|ref|ZP_00684246.1| ribosomal protein S3 [Xylella fastidiosa Ann-1]
 gi|71728013|gb|EAO30227.1| ribosomal protein S3 [Xylella fastidiosa Ann-1]
          Length = 239

 Score =  228 bits (580), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 105/200 (52%), Positives = 151/200 (75%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K++PI  RLG++  WNS+W+A  +E+   L  DLK+R+ L+  + QAG++KILIER 
Sbjct: 1   MGHKVHPIGIRLGISADWNSKWYANKAEFARYLAADLKVRQVLRKKMSQAGISKILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + ++ ARPG++IGK+G DI  +RK++S++    +H++V EV KPE++A L+A+S+
Sbjct: 61  SNTACVSMHVARPGVVIGKRGEDIGMLRKQVSDIMGVPVHINVIEVRKPELDAQLVAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR++FRRAMKR+V +A+R GA G+K+  +GRLNGAE++R+E Y EGRVPLQTLRA
Sbjct: 121 AQQLERRIMFRRAMKRSVSNAIRLGALGIKISVAGRLNGAEIARSEWYREGRVPLQTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKV 200
            I YG + A T YG  G+KV
Sbjct: 181 DIGYGFSEAHTNYGVTGVKV 200


>gi|92112560|ref|YP_572488.1| 30S ribosomal protein S3 [Chromohalobacter salexigens DSM 3043]
 gi|122990610|sp|Q1R0G9|RS3_CHRSD RecName: Full=30S ribosomal protein S3
 gi|91795650|gb|ABE57789.1| SSU ribosomal protein S3P [Chromohalobacter salexigens DSM 3043]
          Length = 232

 Score =  228 bits (580), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 145/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG+     S W+A    Y   L+ DL++R +L+  LK A V+ I IER 
Sbjct: 1   MGQKVNPTGIRLGIVKDHRSVWYAERGAYADKLNNDLEVRRFLEQRLKNASVSDITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
             N RI +++ARPG++IGKKG D++++R+ +S M    +H+++ EV KPE++A L+AQ++
Sbjct: 61  ANNARITIHTARPGIVIGKKGEDVDRLRRDVSEMMGVPVHVNIEEVRKPELDAQLVAQNV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+AMR GA G+K+  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 CGQLERRVMFRRAMKRAVQNAMRLGAGGIKIQLSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A T YG  G+KV+V
Sbjct: 181 DIDYATYEAHTTYGVIGVKVWV 202


>gi|299768672|ref|YP_003730698.1| 30S ribosomal protein S3 [Acinetobacter sp. DR1]
 gi|298698760|gb|ADI89325.1| 30S ribosomal protein S3 [Acinetobacter sp. DR1]
          Length = 250

 Score =  227 bits (579), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 108/208 (51%), Positives = 153/208 (73%), Gaps = 1/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLGV    N+ W+A   +Y   L +DL++RE+L   LK A ++ ILIER 
Sbjct: 1   MGQKVHPIGIRLGVVKRHNANWYASPKQYAEYLLKDLQVREFLTKKLKNAMISNILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ + +ARPG++IGKKG DIEK++++L+++      +S+NE+ +P+++A L+A++I
Sbjct: 61  SGAAKVTISTARPGIVIGKKGEDIEKLQRELTSIMGVPAQVSINEIDRPDLDARLVAEAI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV+FRRAMKRAVQ+ MR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLEKRVMFRRAMKRAVQNTMRAGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T  AET YG+ G+KV++  R E+
Sbjct: 181 DIDYATMRAETTYGTIGVKVWI-FRGEI 207


>gi|15617112|ref|NP_240325.1| 30S ribosomal protein S3 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219682419|ref|YP_002468803.1| 30S ribosomal protein S3 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|11387061|sp|P57585|RS3_BUCAI RecName: Full=30S ribosomal protein S3
 gi|254764518|sp|B8D843|RS3_BUCAT RecName: Full=30S ribosomal protein S3
 gi|25294467|pir||C84990 30S ribosomal protein S3 [imported] - Buchnera sp. (strain APS)
 gi|10039177|dbj|BAB13211.1| 30S ribosomal protein S3 [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219622152|gb|ACL30308.1| 30S ribosomal protein S3 [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311086817|gb|ADP66898.1| 30S ribosomal protein S3 [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
          Length = 233

 Score =  227 bits (579), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 149/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   ++   L  D K+R++L   L++A +++I+IER 
Sbjct: 1   MGQKVHPNGMRLGIIKKWNSVWFANTKDFADHLDSDYKVRQFLMKTLEKASISRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +Y+ARPG++IGKKG D+EK+R  ++ +T   + ++++EV KPE++A L++ SI
Sbjct: 61  AKSIRVTIYTARPGIVIGKKGEDVEKLRISIAKITGVPVQINISEVRKPELDAKLVSDSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKR+VQ+AMR GA G+KV  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRSVQNAMRQGAKGIKVEVSGRLGGAEIARREWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
           +IDY  + A T YG  G+KV++
Sbjct: 181 NIDYSISEAHTTYGVIGVKVWI 202


>gi|311086240|gb|ADP66322.1| 30S ribosomal protein S3 [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
          Length = 233

 Score =  227 bits (579), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 149/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   ++   L  D K+R++L   L++A +++I+IER 
Sbjct: 1   MGQKVHPNGMRLGIIKKWNSVWFANTKDFADHLDSDYKVRQFLMKTLEKASISRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +Y+ARPG++IGKKG D+EK+R  ++ +T   + ++++EV KPE++A L++ SI
Sbjct: 61  AKSIRVTIYTARPGIVIGKKGEDVEKLRISIAKITGVPVQINISEVRKPELDAKLVSDSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKR+VQ+AMR GA G+KV  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRSVQNAMRQGAKGIKVEVSGRLGGAEIARREWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
           +IDY  + A T YG  G+KV++
Sbjct: 181 NIDYSISEAHTTYGVIGVKVWI 202


>gi|219681864|ref|YP_002468250.1| 30S ribosomal protein S3 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471569|ref|ZP_05635568.1| 30S ribosomal protein S3 [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|254764517|sp|B8D9U1|RS3_BUCA5 RecName: Full=30S ribosomal protein S3
 gi|219624707|gb|ACL30862.1| 30S ribosomal protein S3 [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 233

 Score =  227 bits (579), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 149/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   ++   L  D K+R++L   L++A +++I+IER 
Sbjct: 1   MGQKVHPNGMRLGIIKKWNSVWFANTKDFADHLDSDYKVRQFLMKTLEKASISRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +Y+ARPG++IGKKG D+EK+R  ++ +T   + ++++EV KPE++A L++ SI
Sbjct: 61  AKSIRVTIYTARPGIVIGKKGEDVEKLRISIAKITGVPVQINISEVRKPELDAKLVSDSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKR+VQ+AMR GA G+KV  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRSVQNAMRQGAKGIKVEVSGRLGGAEIARREWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
           +IDY  + A T YG  G+KV++
Sbjct: 181 NIDYSISEAHTTYGVIGVKVWI 202


>gi|261211145|ref|ZP_05925434.1| SSU ribosomal protein S3p (S3e) [Vibrio sp. RC341]
 gi|262401877|ref|ZP_06078442.1| SSU ribosomal protein S3p (S3e) [Vibrio sp. RC586]
 gi|260839646|gb|EEX66257.1| SSU ribosomal protein S3p (S3e) [Vibrio sp. RC341]
 gi|262351849|gb|EEZ00980.1| SSU ribosomal protein S3p (S3e) [Vibrio sp. RC586]
          Length = 234

 Score =  227 bits (579), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 145/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   ++   L  D K+R+YL   L  A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNATWFANTKDFADNLDGDFKVRQYLSKELANASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++  L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRAAVAKIAGVPAQINIAEVRKPELDGQLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYATSSAHTTYGVIGVKVWI 202


>gi|152998265|ref|YP_001343100.1| 30S ribosomal protein S3 [Marinomonas sp. MWYL1]
 gi|150839189|gb|ABR73165.1| ribosomal protein S3 [Marinomonas sp. MWYL1]
          Length = 226

 Score =  227 bits (579), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 145/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+     S W+A    Y  LL  DL++R +L+  L QA V++I I+R 
Sbjct: 1   MGQKVHPTGIRLGIVKDHTSTWYANNQNYSKLLLNDLQVRAFLEKKLVQASVSRIEIQRP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI +++ARPG++IGKKG D+EK+R  +S M    +H+++ E+ KPE++A L+AQ+I
Sbjct: 61  AQTARITIHTARPGIVIGKKGEDVEKLRNAVSEMMGVPVHINIEEIRKPEMDAKLVAQNI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRAGAKGIKVQVSGRLGGAEIARAEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A T YG  G+KV++
Sbjct: 181 DIDYATYEAATTYGIIGVKVWI 202


>gi|120596995|ref|YP_961569.1| 30S ribosomal protein S3 [Shewanella sp. W3-18-1]
 gi|146294835|ref|YP_001185259.1| 30S ribosomal protein S3 [Shewanella putrefaciens CN-32]
 gi|152060906|sp|A1REC0|RS3_SHESW RecName: Full=30S ribosomal protein S3
 gi|189045337|sp|A4YBX7|RS3_SHEPC RecName: Full=30S ribosomal protein S3
 gi|120557088|gb|ABM23015.1| SSU ribosomal protein S3P [Shewanella sp. W3-18-1]
 gi|145566525|gb|ABP77460.1| SSU ribosomal protein S3P [Shewanella putrefaciens CN-32]
 gi|319424586|gb|ADV52660.1| ribosomal protein S3 [Shewanella putrefaciens 200]
          Length = 230

 Score =  227 bits (579), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 109/210 (51%), Positives = 152/210 (72%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W S W+A  S+Y   L+ D ++R++L   L+ A V+KI+IER 
Sbjct: 1   MGQKVHPNGIRLGITKPWISTWYADKSDYANNLNSDWEVRKFLVEKLQAASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+E +R  +S +  +   +++ E+ KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEVLRAAVSKLAGTPAQINIAEIRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRIGAQGIKVQVSGRLGGAEIARDEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            IDY T+ + T YG  G+KV++  + EV D
Sbjct: 181 DIDYSTSESHTQYGVIGVKVWI-FKGEVLD 209


>gi|56707484|ref|YP_169380.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110669955|ref|YP_666512.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
           FSC198]
 gi|61215376|sp|Q5NHW2|RS3_FRATT RecName: Full=30S ribosomal protein S3
 gi|123063579|sp|Q14JB4|RS3_FRAT1 RecName: Full=30S ribosomal protein S3
 gi|56603976|emb|CAG44964.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
           SCHU S4]
 gi|110320288|emb|CAL08347.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
           FSC198]
 gi|282158628|gb|ADA78019.1| 30S ribosomal protein S3 [Francisella tularensis subsp. tularensis
           NE061598]
          Length = 222

 Score =  227 bits (579), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG    W S W+A  S Y   L+ED+K+RE+L   L  A V+KI IER 
Sbjct: 1   MGQKVNPNGIRLGYIRDWRSTWYADSSRYATKLNEDIKVREFLHKKLAAAAVSKIQIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N +I +++AR G++IGKKG D+EK+R ++  +    + +++ EV KPEI+A L+A+S+
Sbjct: 61  AQNAKITIHTARSGIVIGKKGEDVEKLRAEVHKLMGIPVQINIEEVRKPEIDAKLVAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV+FRRAMK+A+Q+AM+ GA G+K++ SGRL GAE++R+E   +GRVPLQT RA
Sbjct: 121 AQQLEKRVMFRRAMKKAMQAAMKSGAKGIKIMVSGRLGGAEIARSEWARDGRVPLQTFRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            +DY TA A T YG  G+KV++
Sbjct: 181 DVDYATAEALTTYGVIGVKVWI 202


>gi|221133620|ref|ZP_03559925.1| 30S ribosomal protein S3 [Glaciecola sp. HTCC2999]
          Length = 234

 Score =  227 bits (579), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG++  W S W+A  ++Y   L  D ++R+YL   LK A ++KI+IER 
Sbjct: 1   MGQKVHPTGIRLGISKPWTSTWYANTADYADNLFNDHQVRQYLTKQLKSASLSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ ++ +++ARPG++IGKKG D+EK+R  +S +      +++ EV KPE++  L+A SI
Sbjct: 61  AKSIKVTIHTARPGVVIGKKGEDVEKLRNHVSKLAGVPAQINIAEVRKPELDGQLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           + QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL T RA
Sbjct: 121 SSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTFRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYATSEANTTYGIIGVKVWI 202


>gi|84394584|ref|ZP_00993288.1| 30S ribosomal protein S3 [Vibrio splendidus 12B01]
 gi|86148903|ref|ZP_01067148.1| 30S ribosomal protein S3 [Vibrio sp. MED222]
 gi|218710743|ref|YP_002418364.1| 30S ribosomal protein S3 [Vibrio splendidus LGP32]
 gi|254764557|sp|B7VLF1|RS3_VIBSL RecName: Full=30S ribosomal protein S3
 gi|84374804|gb|EAP91747.1| 30S ribosomal protein S3 [Vibrio splendidus 12B01]
 gi|85833311|gb|EAQ51524.1| 30S ribosomal protein S3 [Vibrio sp. MED222]
 gi|218323762|emb|CAV20118.1| Ribosomal protein S3 [Vibrio splendidus LGP32]
          Length = 232

 Score =  227 bits (579), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA  +E+   L  D K+R++L   L++A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNATWFANTNEFADNLDGDFKVRQFLTKELQKASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++  L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRAAVAKIAGVPAQINIAEVRKPELDGQLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV   GRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVQVGGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  GIKV++
Sbjct: 181 DIDYATSSAHTQYGVIGIKVWI 202


>gi|319654874|ref|ZP_08008949.1| 30S ribosomal protein S3 [Bacillus sp. 2_A_57_CT2]
 gi|317393437|gb|EFV74200.1| 30S ribosomal protein S3 [Bacillus sp. 2_A_57_CT2]
          Length = 218

 Score =  227 bits (579), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 105/208 (50%), Positives = 151/208 (72%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+GV   W S+W+A G +Y  LLHEDLK+REY+   L  A V+K+ IER 
Sbjct: 1   MGQKVNPVGLRVGVIRDWESKWYA-GKDYADLLHEDLKVREYITKRLSDASVSKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++A+PG++IGK GT++E +RK L+++T   +H+++ E+ + +I+A L+A++I
Sbjct: 60  ANRLNITIHTAKPGMVIGKGGTEVEALRKSLNSLTGKRVHINILEIKRADIDAKLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRA K+ +Q AMR GA G+K + SGRL GA+++R+E Y EG VPL TLRA
Sbjct: 120 ARQLENRVSFRRAQKQTIQRAMRAGAKGIKTMVSGRLGGADIARSESYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY TA A+T YG  G+KV++  R EV
Sbjct: 180 DIDYATAEADTTYGKLGVKVWI-YRGEV 206


>gi|113460214|ref|YP_718271.1| 30S ribosomal protein S3 [Haemophilus somnus 129PT]
 gi|170718252|ref|YP_001785272.1| 30S ribosomal protein S3 [Haemophilus somnus 2336]
 gi|123131900|sp|Q0I157|RS3_HAES1 RecName: Full=30S ribosomal protein S3
 gi|112822257|gb|ABI24346.1| SSU ribosomal protein S3P [Haemophilus somnus 129PT]
 gi|168826381|gb|ACA31752.1| ribosomal protein S3 [Haemophilus somnus 2336]
          Length = 235

 Score =  227 bits (579), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 145/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WFA   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVHPHGIRLGIVKPWNSTWFANTQDFADNLDGDFKVRQFLNKELANASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAAIAGVPAQINIAEVKKPELDAKLVAGSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMK+AVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKKAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWI 202


>gi|148982468|ref|ZP_01816770.1| 30S ribosomal protein S3 [Vibrionales bacterium SWAT-3]
 gi|145960459|gb|EDK25836.1| 30S ribosomal protein S3 [Vibrionales bacterium SWAT-3]
          Length = 232

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   ++   L  D K+R++L   L++A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNATWFANTKDFADNLDGDFKVRQFLTKELQKASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++  L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRAAVAKIAGVPAQINIAEVRKPELDGQLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  GIKV++
Sbjct: 181 DIDYATSSAHTQYGVIGIKVWI 202


>gi|89100343|ref|ZP_01173208.1| 30S ribosomal protein S3 [Bacillus sp. NRRL B-14911]
 gi|89084964|gb|EAR64100.1| 30S ribosomal protein S3 [Bacillus sp. NRRL B-14911]
          Length = 218

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 148/202 (73%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+GV   W S+WFA G +Y  LLHEDLK+REY+   L  A ++K+ IER 
Sbjct: 1   MGQKVNPVGLRIGVIRDWESKWFA-GKDYAELLHEDLKVREYITKRLSDASLSKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++A+PG++IGK G+++E +RK L+++T   +H+++ E+ K +I+A L+A++I
Sbjct: 60  ANRLNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINILEIKKADIDAKLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRA K+ +Q AMR GA G+K + SGRL GA+++R+E Y EG VPL TLRA
Sbjct: 120 ARQLENRVSFRRAQKQVIQRAMRAGAKGIKTMVSGRLGGADIARSESYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A+T YG  G+KV++
Sbjct: 180 DIDYATAEADTTYGKLGVKVWI 201


>gi|116624196|ref|YP_826352.1| 30S ribosomal protein S3P [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122253088|sp|Q01W98|RS3_SOLUE RecName: Full=30S ribosomal protein S3
 gi|116227358|gb|ABJ86067.1| SSU ribosomal protein S3P [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 344

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 148/202 (73%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG N  W SRWFA+   Y  LL EDL+++  L+  LK AGV+ I ++R 
Sbjct: 1   MGQKVHPYGFRLGFNKPWRSRWFAKQG-YAKLLQEDLELKAALRERLKSAGVSSIEVDRP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+ + ++RPG+IIG+KG +IEK+++ ++  T  E+ + + EV KPE++A L+++SI
Sbjct: 60  GNKLRVTIRTSRPGIIIGRKGAEIEKLKQDMAKKTKREVFIDIQEVHKPELDAQLVSESI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAM++AV SA+RFG  G+KV  SGRLNGAE++R+E YL+G++PL TLRA
Sbjct: 120 ALQLEKRVAFRRAMRKAVDSALRFGCKGIKVRVSGRLNGAEIARSEWYLQGQLPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  GIK ++
Sbjct: 180 DIDYGFAEAHTTYGVIGIKAWL 201


>gi|206889473|ref|YP_002249239.1| ribosomal protein S3 [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|226697770|sp|B5YG41|RS3_THEYD RecName: Full=30S ribosomal protein S3
 gi|206741411|gb|ACI20468.1| ribosomal protein S3 [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 216

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 151/202 (74%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK NPI  RLG+  TW SRWFA+   Y   L EDLK+R+ L+  L  AG++KI IER 
Sbjct: 1   MGQKTNPIGNRLGIIRTWESRWFAKKG-YADQLIEDLKLRKMLKDKLYHAGISKIEIERV 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  R+++++ARPG+IIGKKG ++E+++K++   T  + ++ + EV +PE++A L+A+++
Sbjct: 60  GEKVRVLIFAARPGIIIGKKGAEVERLKKEVEEKTGKQANIEIKEVRRPELDAQLVAENV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A Q+E+RV +RRAMKRAV S+MRFGA G+KV  +GRL GAE++RTE Y EGRVPL T RA
Sbjct: 120 ALQIEKRVAYRRAMKRAVASSMRFGAKGIKVSCAGRLAGAEIARTEWYREGRVPLSTFRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A+T YG  G+KV++
Sbjct: 180 DIDYGFAEAKTTYGIIGVKVWI 201


>gi|330432118|gb|AEC17177.1| 30S ribosomal protein S3 [Gallibacterium anatis UMN179]
          Length = 235

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W+S W+A   ++   L  D K+R++L   L  A V++I IER 
Sbjct: 1   MGQKVHPHGIRLGIVKPWSSTWYANTQDFADNLDGDFKVRKFLTKELANASVSRITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+A+SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRNAVAAIAGVPAQINIAEVKKPELDAKLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A T YG  G+KV++
Sbjct: 181 DIDYNTAEANTTYGVIGVKVWI 202


>gi|152973962|ref|YP_001373479.1| 30S ribosomal protein S3 [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189044950|sp|A7GK26|RS3_BACCN RecName: Full=30S ribosomal protein S3
 gi|152022714|gb|ABS20484.1| ribosomal protein S3 [Bacillus cytotoxicus NVH 391-98]
          Length = 219

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 145/202 (71%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+GV   W SRWFA   +Y  LLHED+KIREY+   LK + V+K+ IER 
Sbjct: 1   MGQKVNPVGLRVGVIRDWESRWFAE-KDYATLLHEDIKIREYITARLKDSSVSKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +++A+PG++IGK GT++E +RK L+ +T   +H+++ EV K +++A L+A++I
Sbjct: 60  ANRVNVTIHTAKPGMVIGKGGTEVEALRKALNQLTGKRVHINILEVKKADLDAKLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRA K+ +Q AMR GA G+K   SGRL GA+++R E Y EG VPL TLRA
Sbjct: 120 ARQLENRVSFRRAQKQVIQRAMRAGAKGIKTQVSGRLGGADIARAESYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A+T YG  G+KV++
Sbjct: 180 DIDYATAEADTTYGKLGVKVWI 201


>gi|46579720|ref|YP_010528.1| 30S ribosomal protein S3 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602803|ref|YP_967203.1| 30S ribosomal protein S3 [Desulfovibrio vulgaris DP4]
 gi|61215611|sp|Q72CH4|RS3_DESVH RecName: Full=30S ribosomal protein S3
 gi|152060859|sp|A1VEB0|RS3_DESVV RecName: Full=30S ribosomal protein S3
 gi|46449135|gb|AAS95787.1| ribosomal protein S3 [Desulfovibrio vulgaris str. Hildenborough]
 gi|120563032|gb|ABM28776.1| SSU ribosomal protein S3P [Desulfovibrio vulgaris DP4]
 gi|311233511|gb|ADP86365.1| ribosomal protein S3 [Desulfovibrio vulgaris RCH1]
          Length = 212

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 110/212 (51%), Positives = 151/212 (71%), Gaps = 2/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG N  W SRW+++  EY A + ED  IR++++  L  AG+AKI IER 
Sbjct: 1   MGQKVHPFGFRLGYNKNWQSRWYSK-KEYPAFVFEDHNIRKFVKKTLYHAGLAKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+I+ +ARPG++IG+KG +IEK+R  L      E  + VNE+ +PE+ + L+A++I
Sbjct: 60  GGKVRLILSTARPGIVIGRKGVEIEKLRADLRKKFKREFAIEVNEIRRPEVESQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMKR V  A +FGA+G+KV  SGRL GAE++RTE Y +GRVPLQTLRA
Sbjct: 120 ALQLERRVAFRRAMKRTVSMARKFGAEGIKVTCSGRLAGAEIARTEWYRDGRVPLQTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            ID+G A A T YG  G+KV++  + E+ D++
Sbjct: 180 DIDFGFAEARTTYGVIGVKVWI-FKGELLDNE 210


>gi|153952472|ref|YP_001398980.1| 30S ribosomal protein S3 [Campylobacter jejuni subsp. doylei
           269.97]
 gi|171769460|sp|A7H650|RS3_CAMJD RecName: Full=30S ribosomal protein S3
 gi|152939918|gb|ABS44659.1| ribosomal protein S3 [Campylobacter jejuni subsp. doylei 269.97]
          Length = 233

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 110/228 (48%), Positives = 157/228 (68%), Gaps = 8/228 (3%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF   +     + ED KIR +L+  L  AG+++IL+ERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLKRKLYYAGISQILVERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPG+IIGKKG+D++ +RK+L ++ + ++++++ E  K   +A L A+S+
Sbjct: 61  AKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLISKDVNINIKEERKAGASAQLAAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+R+ FRRAMK+ +Q A + GA G+KV  SGRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 ATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV-------SDSDSTIPAAEHR 221
            IDYG A A T YG+ G+KV++  + EV         ++ + PA + R
Sbjct: 181 KIDYGFAEARTTYGNIGVKVWI-FKGEVLHKGMQPEKTEESAPAKKSR 227


>gi|260770919|ref|ZP_05879848.1| SSU ribosomal protein S3p (S3e) [Vibrio furnissii CIP 102972]
 gi|260614156|gb|EEX39346.1| SSU ribosomal protein S3p (S3e) [Vibrio furnissii CIP 102972]
 gi|315178965|gb|ADT85879.1| 30S ribosomal protein S3 [Vibrio furnissii NCTC 11218]
          Length = 233

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   ++   L  D K+R++L   L +A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNATWFANTKDFADNLDGDFKVRQFLTKELSKASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++  L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRTAVAKIAGVPAQINIAEVRKPELDGQLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYATSSAHTTYGVIGVKVWI 202


>gi|71282222|ref|YP_267616.1| 30S ribosomal protein S3 [Colwellia psychrerythraea 34H]
 gi|91207648|sp|Q487Z9|RS3_COLP3 RecName: Full=30S ribosomal protein S3
 gi|71147962|gb|AAZ28435.1| ribosomal protein S3 [Colwellia psychrerythraea 34H]
          Length = 231

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 111/224 (49%), Positives = 157/224 (70%), Gaps = 4/224 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG+   + S WFA   ++ + L  D K+RE+L+  LK+A ++K++IER 
Sbjct: 1   MGQKVNPTGIRLGITKPFASTWFASNKDFASNLDGDHKVREFLKEKLKRASLSKVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  +S +      +++ EV KPE++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRLAVSKIAGVPAQINIAEVRKPEMDAQLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GA+++R E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVQVSGRLGGADIARAEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDS---DSTIPAAEHR 221
            IDY  A   T YG  GIKV++  + E+  +    + +PAA+ +
Sbjct: 181 DIDYAIARGNTTYGVIGIKVWI-FKGEIIGNMPLQAEVPAAKPK 223


>gi|224437289|ref|ZP_03658261.1| 30S ribosomal protein S3 [Helicobacter cinaedi CCUG 18818]
 gi|313143744|ref|ZP_07805937.1| 30S ribosomal protein S3 [Helicobacter cinaedi CCUG 18818]
 gi|313128775|gb|EFR46392.1| 30S ribosomal protein S3 [Helicobacter cinaedi CCUG 18818]
          Length = 235

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W+SRWF+      + + ED KIR++L+  +  AGV++I+IER 
Sbjct: 1   MGQKVNPIGLRLGINRNWSSRWFSVSQATPSNILEDHKIRKFLKREMYYAGVSEIIIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+ V ++RPGLIIGKKG DI+K ++ L  + N E+ +++ E  +P+ NA L A++I
Sbjct: 61  ANKIRVTVVASRPGLIIGKKGVDIDKHKEALKKILNKEVFINIKEAKRPQANAQLAAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q+AM+ GA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 ATQLEKRVAFRRAMKKVMQAAMKAGAKGIKVKVSGRLAGAEMARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAMTTYGIIGVKVWI 202


>gi|323703542|ref|ZP_08115188.1| ribosomal protein S3 [Desulfotomaculum nigrificans DSM 574]
 gi|323531533|gb|EGB21426.1| ribosomal protein S3 [Desulfotomaculum nigrificans DSM 574]
          Length = 221

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   R+G+   W  +WFA    Y  LL ED+KIRE+++  L QAG+AKI IER 
Sbjct: 1   MGQKVNPKGLRIGIIKDWEGKWFADKRNYSNLLIEDVKIREFIKKKLYQAGIAKIQIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ +++A+PG++IG+ G ++E +RK+L  MT  ++++++ EV  PEI+A L+A+++
Sbjct: 61  ANRVKVSIHTAKPGIVIGRGGAEVEALRKQLEKMTGKQVNVNIVEVKTPEIDAQLVAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+R+ FRRAMK+ VQ A+R GA G+K+  SGRL GAE++RTE Y EG+VPL TLRA
Sbjct: 121 AAQLEKRIAFRRAMKQTVQRALRLGAKGIKIACSGRLAGAEIARTEWYSEGKVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 DIDYGFAEANTTYGKIGVKVWI 202


>gi|283953688|ref|ZP_06371219.1| 30S ribosomal protein S3 [Campylobacter jejuni subsp. jejuni 414]
 gi|283794729|gb|EFC33467.1| 30S ribosomal protein S3 [Campylobacter jejuni subsp. jejuni 414]
          Length = 233

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 110/228 (48%), Positives = 157/228 (68%), Gaps = 8/228 (3%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF   +     + ED KIR +L+  L  AG+++IL+ERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLKRKLYYAGISQILVERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPG+IIGKKG+D++ +RK+L ++ + ++++++ E  K   +A L A+S+
Sbjct: 61  AKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLISKDVNINIKEERKAGASAQLAAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+R+ FRRAMK+ +Q A + GA G+KV  SGRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 ATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV-------SDSDSTIPAAEHR 221
            IDYG A A T YG+ G+KV++  + EV         ++ + PA + R
Sbjct: 181 KIDYGFAEARTTYGNIGVKVWI-FKGEVLHKGMQPEKTEESTPAKKPR 227


>gi|58384686|gb|AAW72701.1| 30S ribosomal protein S3 [Buchnera aphidicola (Cinara cedri)]
          Length = 235

 Score =  226 bits (577), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 104/210 (49%), Positives = 154/210 (73%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+  +WNS WFA   E+   L  D K+R Y++  L +A V+K++IER 
Sbjct: 1   MGQKVHPNGMRLGIIKSWNSIWFASKKEFSNYLDSDFKVRSYVKKKLIKASVSKVIIERL 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N R+ +Y+ARPG++IGKKG D+EK+R +++ +T     ++++E+ KPE++A L+A +I
Sbjct: 61  SQNIRVTIYTARPGIVIGKKGEDVEKLRIEIAKITGVPAQVNISEIRKPELDAKLVADNI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           + QLERRV+FRRA+KR+VQ+AMR GA G+K+  SGRL G E++R E Y EGRVPL TLRA
Sbjct: 121 SSQLERRVMFRRAIKRSVQNAMRQGAKGIKIEVSGRLGGVEIARREWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
           +I+Y T+ A T YG  G+KV++  + E+ D
Sbjct: 181 NIEYNTSEAHTTYGIIGVKVWI-FKGEILD 209


>gi|332038831|gb|EGI75273.1| 30S ribosomal protein S3 [Pseudoalteromonas haloplanktis ANT/505]
          Length = 233

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG++  W S W+A   ++ A L  D K+R +L   LK A V+KI+IER 
Sbjct: 1   MGQKVHPTGIRLGISKPWVSTWYASSKDFSAQLFGDHKVRTFLTKELKTASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R+ ++ +      ++++EV KPE++A L+A  I
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRQAVTKIAGVPAQINISEVRKPELDAQLVADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKR+VQ+AMR G+ G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRSVQNAMRIGSKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYATSEALTTYGIIGVKVWI 202


>gi|119478126|ref|ZP_01618205.1| 30S ribosomal protein S3 [marine gamma proteobacterium HTCC2143]
 gi|119448832|gb|EAW30075.1| 30S ribosomal protein S3 [marine gamma proteobacterium HTCC2143]
          Length = 227

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLG+     S W+A G  Y   L  DL++RE+L+  L  A V++I+IER 
Sbjct: 1   MGQKVHPIGIRLGITKQHTSIWYAEGGAYAEHLINDLEVREFLEKKLNSASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI +++ARPG+IIGKKG D++K+RK+LS      +H+++ E+ KP+++A L+AQ++
Sbjct: 61  AQTARITIHTARPGIIIGKKGEDVDKLRKELSAKMGVPVHINIEEIRKPDLDAKLVAQNV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKR VQ+AMR GA G+KV  SGR+ GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AGQLERRVMFRRAMKRVVQNAMRQGAQGIKVQVSGRVGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY    A T YG  G+KV++
Sbjct: 181 DIDYSAYEAATTYGIIGVKVWI 202


>gi|139438586|ref|ZP_01772102.1| Hypothetical protein COLAER_01100 [Collinsella aerofaciens ATCC
           25986]
 gi|133776125|gb|EBA39945.1| Hypothetical protein COLAER_01100 [Collinsella aerofaciens ATCC
           25986]
          Length = 236

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/222 (49%), Positives = 156/222 (70%), Gaps = 4/222 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+ P  FRLG+   W SRWFA   +Y   L  DL+IR+YL+  L +A V+++ IER 
Sbjct: 1   MGQKVYPTGFRLGITENWRSRWFAE-KDYAKTLGNDLEIRKYLEKRLSRAAVSRVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIR---KKLSNMTNSEIHLSVNEVPKPEINATLIA 117
               ++I+ +ARPG++IGKKG +I+ +R   +K++ ++  ++ + V E+ +PE++A L+A
Sbjct: 60  GDKVKVIILTARPGVVIGKKGAEIDTLRTELEKVAGVSKGQLSVDVVEIKRPELDANLVA 119

Query: 118 QSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQT 177
           QSIA+QLE RV FRRAM++AVQSA + GA G+++  SGRL GAE+ R E Y EGRVPL T
Sbjct: 120 QSIAEQLEGRVAFRRAMRKAVQSARKAGAKGIRIQCSGRLGGAEMGRREWYREGRVPLHT 179

Query: 178 LRAHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
           LRA IDYGTAVA T  G+CG+KV++ L +++       PA E
Sbjct: 180 LRAKIDYGTAVASTTMGACGVKVWIYLGEKLPGQPVPNPALE 221


>gi|315125268|ref|YP_004067271.1| 30S ribosomal protein S3 [Pseudoalteromonas sp. SM9913]
 gi|315013781|gb|ADT67119.1| 30S ribosomal protein S3 [Pseudoalteromonas sp. SM9913]
          Length = 233

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG++  W S W+A   ++ A L  D K+R +L   LK A V+KI+IER 
Sbjct: 1   MGQKVHPTGIRLGISKPWVSTWYANSKDFSAQLFGDHKVRTFLTKELKAASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R+ ++ +      ++++EV KPE++A L+A  I
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRQAVTKIAGVPAQINISEVRKPELDAQLVADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKR+VQ+AMR G+ G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRSVQNAMRIGSKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYATSEALTTYGIIGVKVWI 202


>gi|237751230|ref|ZP_04581710.1| 30s ribosomal protein s3 [Helicobacter bilis ATCC 43879]
 gi|229372596|gb|EEO22987.1| 30s ribosomal protein s3 [Helicobacter bilis ATCC 43879]
          Length = 229

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 142/202 (70%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF         + ED  IR++L+  L  A V++I+IER 
Sbjct: 1   MGQKVNPIGLRLGINRNWTSRWFPNAQNTPERIGEDHIIRKFLKKELYYASVSEIIIERM 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+ V +A+PGLIIGKKG DIEK+++ L  + N ++ +++ EV + + NA L A+S+
Sbjct: 61  ATKLRVTVVAAKPGLIIGKKGADIEKVKETLRKLVNKDVAINIKEVKRAQANAQLAAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK+ +Q AM+ GA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 AMQLERRVAFRRAMKKVMQQAMKSGAKGIKVKVSGRLAGAEMARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAATTYGIIGVKVWI 202


>gi|57238708|ref|YP_179839.1| 30S ribosomal protein S3 [Campylobacter jejuni RM1221]
 gi|86149245|ref|ZP_01067476.1| ribosomal protein S3 [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|86152293|ref|ZP_01070504.1| ribosomal protein S3 [Campylobacter jejuni subsp. jejuni 260.94]
 gi|86153025|ref|ZP_01071230.1| ribosomal protein S3 [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|88596276|ref|ZP_01099513.1| ribosomal protein S3 [Campylobacter jejuni subsp. jejuni 84-25]
 gi|121612744|ref|YP_001001345.1| 30S ribosomal protein S3 [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|148926792|ref|ZP_01810471.1| 30S ribosomal protein S3 [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|157415923|ref|YP_001483179.1| 30S ribosomal protein S3 [Campylobacter jejuni subsp. jejuni 81116]
 gi|167006234|ref|ZP_02271992.1| 30S ribosomal protein S3 [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|205355715|ref|ZP_03222485.1| 30S ribosomal protein S3 [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|218563287|ref|YP_002345067.1| 30S ribosomal protein S3 [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|283956157|ref|ZP_06373642.1| 30S ribosomal protein S3 [Campylobacter jejuni subsp. jejuni 1336]
 gi|315125088|ref|YP_004067092.1| 30S ribosomal protein S3 [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|27734540|sp|Q9PLX7|RS3_CAMJE RecName: Full=30S ribosomal protein S3
 gi|81675524|sp|Q5HS96|RS3_CAMJR RecName: Full=30S ribosomal protein S3
 gi|152060853|sp|A1W1V4|RS3_CAMJJ RecName: Full=30S ribosomal protein S3
 gi|172047265|sp|A8FP15|RS3_CAMJ8 RecName: Full=30S ribosomal protein S3
 gi|57167512|gb|AAW36291.1| ribosomal protein S3 [Campylobacter jejuni RM1221]
 gi|85840027|gb|EAQ57285.1| ribosomal protein S3 [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|85840782|gb|EAQ58033.1| ribosomal protein S3 [Campylobacter jejuni subsp. jejuni 260.94]
 gi|85843910|gb|EAQ61120.1| ribosomal protein S3 [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|87249801|gb|EAQ72760.1| ribosomal protein S3 [Campylobacter jejuni subsp. jejuni 81-176]
 gi|88191117|gb|EAQ95089.1| ribosomal protein S3 [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360994|emb|CAL35795.1| 30S ribosomal protein S3 [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|145844517|gb|EDK21624.1| 30S ribosomal protein S3 [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|157386887|gb|ABV53202.1| 30S ribosomal protein S3 [Campylobacter jejuni subsp. jejuni 81116]
 gi|205346492|gb|EDZ33125.1| 30S ribosomal protein S3 [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|283792311|gb|EFC31095.1| 30S ribosomal protein S3 [Campylobacter jejuni subsp. jejuni 1336]
 gi|284926892|gb|ADC29244.1| 30S ribosomal protein S3 [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|307748561|gb|ADN91831.1| 30S ribosomal protein S3 [Campylobacter jejuni subsp. jejuni M1]
 gi|315018810|gb|ADT66903.1| 30S ribosomal protein S3 [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315059147|gb|ADT73476.1| SSU ribosomal protein S3p [Campylobacter jejuni subsp. jejuni S3]
 gi|315926628|gb|EFV06008.1| ribosomal protein S3 [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315930387|gb|EFV09463.1| ribosomal protein S3 [Campylobacter jejuni subsp. jejuni 305]
 gi|315931331|gb|EFV10300.1| ribosomal protein S3 [Campylobacter jejuni subsp. jejuni 327]
          Length = 233

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 110/228 (48%), Positives = 156/228 (68%), Gaps = 8/228 (3%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF   +     + ED KIR +L+  L  AG+++IL+ERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLKRKLYYAGISQILVERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPG+IIGKKG+D++ +RK+L ++   ++++++ E  K   +A L A+S+
Sbjct: 61  AKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNINIKEERKAGASAQLAAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+R+ FRRAMK+ +Q A + GA G+KV  SGRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 ATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV-------SDSDSTIPAAEHR 221
            IDYG A A T YG+ G+KV++  + EV         ++ + PA + R
Sbjct: 181 KIDYGFAEARTTYGNIGVKVWI-FKGEVLHKGMQPEKTEESAPAKKPR 227


>gi|254483419|ref|ZP_05096648.1| ribosomal protein S3 [marine gamma proteobacterium HTCC2148]
 gi|214036293|gb|EEB76971.1| ribosomal protein S3 [marine gamma proteobacterium HTCC2148]
          Length = 223

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 108/217 (49%), Positives = 153/217 (70%), Gaps = 1/217 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLG+    NS W+A    Y   L  DL++REY++  L+ A V++I+IER 
Sbjct: 1   MGQKVHPIGIRLGIVKEHNSIWYADSKNYAKQLINDLQVREYIEKALEHASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI +++ARPG++IGKKG D++ +RK L+      +H+++ E+ KP+++A L+AQ++
Sbjct: 61  AQTARITIHTARPGIVIGKKGEDVDALRKILTEKMGVPVHINIEEIRKPDLDAKLVAQNV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKR VQ+AMR GA G+K+   GRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRVVQNAMRQGAQGIKIQVGGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPA 217
            IDY T  A T YG  G+KV++  + EV  +D    A
Sbjct: 181 DIDYATYEAATTYGIIGVKVWI-FKGEVIGADEAAEA 216


>gi|319789244|ref|YP_004150877.1| ribosomal protein S3 [Thermovibrio ammonificans HB-1]
 gi|317113746|gb|ADU96236.1| ribosomal protein S3 [Thermovibrio ammonificans HB-1]
          Length = 232

 Score =  226 bits (575), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 104/216 (48%), Positives = 153/216 (70%), Gaps = 1/216 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGS-EYGALLHEDLKIREYLQCHLKQAGVAKILIER 59
           MGQK++P+ FRLG+   W S+W  +   EY   LHEDLKIR+ ++     AG+A+I IER
Sbjct: 1   MGQKVHPVGFRLGITKDWESKWVTKKKGEYVHNLHEDLKIRDLIKKKYYHAGIARIDIER 60

Query: 60  THKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQS 119
           T +   I +++ARPGL+I +KG +++ +R+ L  +T   +++++ EV  P++NA L+A++
Sbjct: 61  TPERINIRIWAARPGLLIARKGAEVKALRRFLEELTGKNVYINIEEVKYPQLNAQLVAEN 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           +AQQLERRV FRRAMKR +  AM+ GA G+KV+ +GRL GA+++R E Y EGRVPLQT+R
Sbjct: 121 VAQQLERRVAFRRAMKRVIADAMKAGAKGIKVMCAGRLGGADMARKEWYREGRVPLQTIR 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
           A IDYGTA+A+T YG  G+KV++   D   D    +
Sbjct: 181 ADIDYGTAIAKTKYGVIGVKVWIYKGDVYKDETEEL 216


>gi|134298099|ref|YP_001111595.1| 30S ribosomal protein S3 [Desulfotomaculum reducens MI-1]
 gi|189044975|sp|A4J117|RS3_DESRM RecName: Full=30S ribosomal protein S3
 gi|134050799|gb|ABO48770.1| SSU ribosomal protein S3P [Desulfotomaculum reducens MI-1]
          Length = 221

 Score =  226 bits (575), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   R+G+   W  +WFA    Y  LL ED+KIREY++  L QAG+++I IER 
Sbjct: 1   MGQKVNPKGLRVGIIKDWEGKWFADKRNYSNLLIEDVKIREYIKRKLYQAGISRIQIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ +++A+PG++IG+ G ++E +RK+L  MT  ++H+++ EV  PE++A L+A++I
Sbjct: 61  ANRVKVSIHTAKPGIVIGRGGAEVEALRKELEKMTAKQVHVNIVEVKTPEVDAQLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+R+ FRRAMK+ VQ ++R GA G+K+  SGRL GAE++RTE Y EG+VPL TLRA
Sbjct: 121 ASQLEKRIAFRRAMKQTVQRSLRMGAKGIKIACSGRLAGAEIARTEWYSEGKVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 DIDYGFAEANTTYGKIGVKVWI 202


>gi|307720142|ref|YP_003891282.1| 30S ribosomal protein S3P [Sulfurimonas autotrophica DSM 16294]
 gi|306978235|gb|ADN08270.1| SSU ribosomal protein S3P [Sulfurimonas autotrophica DSM 16294]
          Length = 238

 Score =  226 bits (575), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 108/202 (53%), Positives = 141/202 (69%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF       A L ED KIR +L+  L  AGV+ I+IERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPNFKTAPAALGEDHKIRTFLKKELYYAGVSNIIIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ + +ARPG+IIGKKG DIEK++  +  +    + +++ E  K + +A L+A+++
Sbjct: 61  VKRLRVTIVAARPGIIIGKKGADIEKLKTAVQKLVGKTVSINIKEEKKAQTSAQLVAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK+ +Q A R GA G+KV  +GRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 ATQLERRVAFRRAMKKVMQGAQRSGAKGIKVAVAGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAHTTYGIIGVKVWI 202


>gi|218885193|ref|YP_002434514.1| 30S ribosomal protein S3 [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|226697699|sp|B8DNA2|RS3_DESVM RecName: Full=30S ribosomal protein S3
 gi|218756147|gb|ACL07046.1| ribosomal protein S3 [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 213

 Score =  226 bits (575), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 109/212 (51%), Positives = 150/212 (70%), Gaps = 2/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG N  W SRWF++  EY   + ED  IR++++  L  AG++KI IER 
Sbjct: 1   MGQKVHPYGFRLGYNKNWQSRWFSK-KEYPGFVFEDHNIRKFVKKTLYHAGLSKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+I+ +ARPG++IG+KG +IEK+R  L      E  + VNE+ +PE+ A L+A++I
Sbjct: 60  GGKVRLILSTARPGIVIGRKGVEIEKLRGDLRKKFKREFSIEVNEIRRPEVEAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMKR V  + +FGA+G+KV  SGRL GAE++RTE Y +GRVPLQTLRA
Sbjct: 120 ALQLERRVAFRRAMKRTVSMSRKFGAEGIKVTCSGRLAGAEIARTEWYRDGRVPLQTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            ID+G A A T YG  G+KV++  + E+ D++
Sbjct: 180 DIDFGFAEARTTYGVIGVKVWI-FKGEILDNE 210


>gi|118474301|ref|YP_891250.1| 30S ribosomal protein S3 [Campylobacter fetus subsp. fetus 82-40]
 gi|152060852|sp|A0RM17|RS3_CAMFF RecName: Full=30S ribosomal protein S3
 gi|118413527|gb|ABK81947.1| ribosomal protein S3 [Campylobacter fetus subsp. fetus 82-40]
          Length = 232

 Score =  226 bits (575), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 145/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF   +     + ED KIR++L+  L  AGV++IL+ERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPSKATLPENIGEDYKIRKFLKTKLYYAGVSQILVERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPG+IIGKKG +IE +R +++ + N +I +++ E  K   +A L A+++
Sbjct: 61  AKKLRVTVVAARPGIIIGKKGGEIENLRSEVTKLVNKDIAINIKEERKAGSSAQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK+ +Q A + GA G+KV  +GRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 AMQLERRVAFRRAMKKVIQGAQKAGAKGIKVSVAGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG+ G+KV++
Sbjct: 181 RIDYGFAEAHTTYGNIGVKVWI 202


>gi|311029055|ref|ZP_07707145.1| 30S ribosomal protein S3 [Bacillus sp. m3-13]
          Length = 218

 Score =  226 bits (575), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 105/208 (50%), Positives = 152/208 (73%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  R+GV   W S+W+A G +Y  LLHED+K+REY+   L  A V+K+ IER 
Sbjct: 1   MGQKVNPIGLRVGVIRDWESKWYA-GKDYANLLHEDIKVREYIAKRLNDASVSKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + V++A+PG++IGK GT++E +RK L+ +T   +H+++ E+ + +++A L+A++I
Sbjct: 60  ANRLNVTVHTAKPGMVIGKGGTEVEALRKALNQLTGKRVHINILEIKRADLDAKLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRA K+++Q AMR GA G+K + SGRL GA+++R+E Y EG VPL TLRA
Sbjct: 120 ARQLENRVSFRRAQKQSLQRAMRAGAKGIKTMVSGRLGGADIARSEHYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDYGTA A+T YG  G+KV++  R EV
Sbjct: 180 DIDYGTAEADTTYGKLGVKVWI-YRGEV 206


>gi|212637960|ref|YP_002314480.1| 30S ribosomal protein S3 [Anoxybacillus flavithermus WK1]
 gi|226697662|sp|B7GJ73|RS3_ANOFW RecName: Full=30S ribosomal protein S3
 gi|212559440|gb|ACJ32495.1| Ribosomal protein S3 [Anoxybacillus flavithermus WK1]
          Length = 218

 Score =  226 bits (575), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 146/202 (72%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  R+G+   W SRW+A   +Y  LLHEDLKIREYL   L  A V++I IER 
Sbjct: 1   MGQKVNPIGLRIGIIRDWESRWYAE-KDYADLLHEDLKIREYLTKRLSDAAVSRIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++A+PG++IGK G+++E +RK L+ +T   +H+++ E+ KP++ A L+A++I
Sbjct: 60  ANRVNITIHTAKPGMVIGKGGSEVEALRKALNELTGKRVHINIVEIKKPDLEAKLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+Q+E RV FRRA K+A+Q  MR GA G+K + SGRL GA+++R+E Y EG VPL TLRA
Sbjct: 120 ARQIENRVSFRRAQKQAIQRTMRAGAKGIKTMVSGRLGGADIARSEHYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA A+T YG  G+KV++
Sbjct: 180 DIDYATAEADTTYGKIGVKVWI 201


>gi|262370572|ref|ZP_06063897.1| ribosomal protein S3 [Acinetobacter johnsonii SH046]
 gi|262314372|gb|EEY95414.1| ribosomal protein S3 [Acinetobacter johnsonii SH046]
          Length = 250

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 108/208 (51%), Positives = 152/208 (73%), Gaps = 1/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLGV    N+ W+A   +Y   L +DL++RE+L   LK A ++ ILIER 
Sbjct: 1   MGQKVHPIGIRLGVVKRHNANWYASPKQYAEYLLKDLQVREFLTKKLKNAMISNILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ + +ARPG++IGKKG DIEK++++L+ +      +S+NE+ +P+++A L+A++I
Sbjct: 61  TGAAKVTISTARPGIVIGKKGEDIEKLQRELTQIMGIPAQVSINEIDRPDLDARLVAEAI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV+FRRAMKRAVQ+ MR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLEKRVMFRRAMKRAVQNTMRAGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T  AET YG+ G+KV++  R E+
Sbjct: 181 DIDYSTMRAETTYGTIGVKVWI-FRGEI 207


>gi|256821668|ref|YP_003145631.1| 30S ribosomal protein S3 [Kangiella koreensis DSM 16069]
 gi|256795207|gb|ACV25863.1| ribosomal protein S3 [Kangiella koreensis DSM 16069]
          Length = 233

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+     + W+A   ++   L  D+ IR++L   LK A ++++ IER 
Sbjct: 1   MGQKVHPTGIRLGIVKKHTATWYAERGDFADYLESDINIRKWLFKELKNASISRVDIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ +++ARPG++IGKKG DIEK+R K++NM      +SV +V KPE++A L+  ++
Sbjct: 61  AKAIRVTIHTARPGIVIGKKGEDIEKLRAKIANMAGVSAQVSVEQVRKPELDAQLVGDNV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+AMR GA+G+K+  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRLGAEGIKIEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  GIKV++
Sbjct: 181 DIDYATSEALTTYGIIGIKVWI 202


>gi|56961938|ref|YP_173660.1| 30S ribosomal protein S3 [Bacillus clausii KSM-K16]
 gi|61215396|sp|Q5WLQ6|RS3_BACSK RecName: Full=30S ribosomal protein S3
 gi|56908172|dbj|BAD62699.1| 30S ribosomal protein S3 [Bacillus clausii KSM-K16]
          Length = 220

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 103/214 (48%), Positives = 153/214 (71%), Gaps = 1/214 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+GV   W+S+W+A   +Y  LLHED+ IRE+++  LK A V+K+ IER 
Sbjct: 1   MGQKVNPVGLRVGVIRDWDSKWYAGKKDYADLLHEDIAIREHVEGRLKDASVSKVEIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I + +A+PG++IGK G+++E +RK L+ +T   +H++++E+ + +++A L+A++I
Sbjct: 61  ANRVNITISTAKPGMVIGKGGSEVEALRKSLNELTGKRVHINISEIKQADLDAKLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE R+ FRRAMK+A+Q  MR GA G+K   SGRL GA+++R E Y EG VPL TLRA
Sbjct: 121 ARQLENRISFRRAMKQAIQRTMRAGAKGIKTQVSGRLGGADIARAEHYSEGTVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDST 214
            IDYGTA A+T YG  G+K++V  R EV  +  T
Sbjct: 181 DIDYGTAEADTTYGKIGVKIWV-YRGEVLPTKGT 213


>gi|325123598|gb|ADY83121.1| 30S ribosomal protein S3 [Acinetobacter calcoaceticus PHEA-2]
          Length = 265

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 109/208 (52%), Positives = 153/208 (73%), Gaps = 1/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLGV    N+ W+A   +Y   L +DL++RE+L   LK A V+ ILIER 
Sbjct: 1   MGQKVHPIGIRLGVVKRHNANWYANPKQYAEYLLKDLQVREFLTKKLKNAMVSNILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ + +ARPG++IGKKG DIEK++++L+++      +S+NE+ +P+++A L+A++I
Sbjct: 61  SGAAKVTISTARPGIVIGKKGEDIEKLQRELTSIMGVPAQVSINEIDRPDLDARLVAEAI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV+FRRAMKRAVQ+ MR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLEKRVMFRRAMKRAVQNTMRAGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T  AET YG+ G+KV++  R E+
Sbjct: 181 DIDYATMRAETTYGTIGVKVWI-FRGEI 207


>gi|156973057|ref|YP_001443964.1| 30S ribosomal protein S3 [Vibrio harveyi ATCC BAA-1116]
 gi|269959697|ref|ZP_06174077.1| 30S ribosomal protein S3 [Vibrio harveyi 1DA3]
 gi|171769917|sp|A7N0I3|RS3_VIBHB RecName: Full=30S ribosomal protein S3
 gi|156524651|gb|ABU69737.1| hypothetical protein VIBHAR_00736 [Vibrio harveyi ATCC BAA-1116]
 gi|269835620|gb|EEZ89699.1| 30S ribosomal protein S3 [Vibrio harveyi 1DA3]
          Length = 232

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   ++   L  D K+R++L   L++A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNATWFANTKDFADNLDGDFKVRQFLTKELQKASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++A L+  SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRAAVAKIAGVPAQINIAEVRKPELDAQLVGDSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  GIK ++
Sbjct: 181 DIDYATSSAHTQYGVIGIKTWI 202


>gi|257791918|ref|YP_003182524.1| 30S ribosomal protein S3 [Eggerthella lenta DSM 2243]
 gi|317489924|ref|ZP_07948416.1| ribosomal protein S3 [Eggerthella sp. 1_3_56FAA]
 gi|325829995|ref|ZP_08163453.1| ribosomal protein S3 [Eggerthella sp. HGA1]
 gi|257475815|gb|ACV56135.1| ribosomal protein S3 [Eggerthella lenta DSM 2243]
 gi|316910922|gb|EFV32539.1| ribosomal protein S3 [Eggerthella sp. 1_3_56FAA]
 gi|325488162|gb|EGC90599.1| ribosomal protein S3 [Eggerthella sp. HGA1]
          Length = 237

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 113/219 (51%), Positives = 150/219 (68%), Gaps = 1/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG+   W SRW+A   +Y   L  DL IR++L   L +A V+KI IER 
Sbjct: 1   MGQKVSPTGFRLGITEEWRSRWYA-DKDYAKNLANDLAIRKFLDKQLARAAVSKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +IIV +ARPG++IGKKG +I+ +RKKL  + N  + + V EV +PE++A LIAQS+
Sbjct: 60  GDKIKIIVTTARPGVVIGKKGAEIDSLRKKLEKVANGPVSIEVVEVKRPELDAALIAQSV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRAM++AVQSA + GA G+++  SGRL GAE+SR E Y EGRVPL TLRA
Sbjct: 120 AEQLEGRVAFRRAMRKAVQSARKSGAKGIRIQCSGRLGGAEMSRREWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDYG A A T  GS G++V+V   + +    +  PA E
Sbjct: 180 KIDYGFATAATTMGSIGVQVWVYHGEVLPGQKAPQPALE 218


>gi|261409515|ref|YP_003245756.1| 30S ribosomal protein S3 [Paenibacillus sp. Y412MC10]
 gi|315649693|ref|ZP_07902777.1| ribosomal protein S3 [Paenibacillus vortex V453]
 gi|329922023|ref|ZP_08277816.1| ribosomal protein S3 [Paenibacillus sp. HGF5]
 gi|261285978|gb|ACX67949.1| ribosomal protein S3 [Paenibacillus sp. Y412MC10]
 gi|315274881|gb|EFU38257.1| ribosomal protein S3 [Paenibacillus vortex V453]
 gi|328942406|gb|EGG38670.1| ribosomal protein S3 [Paenibacillus sp. HGF5]
          Length = 221

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/209 (50%), Positives = 154/209 (73%), Gaps = 3/209 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+G+   W S+W+A G ++G LL ED+KIREYL+  LK + V++I IER 
Sbjct: 1   MGQKVNPVGLRIGIIRDWESKWYA-GKDFGDLLLEDVKIREYLKNKLKDSAVSRIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSE-IHLSVNEVPKPEINATLIAQS 119
                + +++A+PG++IGK G+++E +R +++ +   + +H++++E+  PE++A L+A+S
Sbjct: 60  ANRVNVTIHTAKPGMVIGKGGSEVEVLRGQVTKIAGGKKVHINISEIKNPELDAILVAES 119

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IAQQLERRV FRRA+K+A+Q  MR GA G+K   SGRL GAE++RTE Y EG VPL TLR
Sbjct: 120 IAQQLERRVSFRRALKQAIQRTMRSGAKGIKTSVSGRLGGAEIARTEGYSEGTVPLHTLR 179

Query: 180 AHIDYGTAVAETAYGSCGIKVYVSLRDEV 208
           A IDYGTA A T YG  G+KV++  R EV
Sbjct: 180 ADIDYGTAEAHTTYGRIGVKVWI-YRGEV 207


>gi|262377306|ref|ZP_06070530.1| ribosomal protein S3 [Acinetobacter lwoffii SH145]
 gi|262307759|gb|EEY88898.1| ribosomal protein S3 [Acinetobacter lwoffii SH145]
          Length = 250

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 108/208 (51%), Positives = 153/208 (73%), Gaps = 1/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLGV    N+ W+A   +Y   L +DL++RE+L   LK A ++ ILIER 
Sbjct: 1   MGQKVHPIGIRLGVVKRHNANWYANPKQYAEYLLKDLQVREFLIKKLKNAMISNILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ + +ARPG++IGKKG DIEK++++L+++      +S+NE+ +P+++A L+A++I
Sbjct: 61  TGAAKVTISTARPGIVIGKKGEDIEKLQRELTSIMGVPAQVSINEIDRPDLDARLVAEAI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV+FRRAMKRAVQ+ MR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLEKRVMFRRAMKRAVQNTMRAGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T  AET YG+ G+KV++  R E+
Sbjct: 181 DIDYATMRAETTYGTIGVKVWI-FRGEI 207


>gi|225158906|ref|ZP_03725220.1| ribosomal protein S3 [Opitutaceae bacterium TAV2]
 gi|224802524|gb|EEG20782.1| ribosomal protein S3 [Opitutaceae bacterium TAV2]
          Length = 212

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 104/211 (49%), Positives = 149/211 (70%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK NP+ FRL V   W SRW+A   ++  LLHED  IR  L   LKQA V +I IER 
Sbjct: 1   MGQKTNPVGFRLAVRRNWQSRWYATKKDFAKLLHEDQIIRGKLMEKLKQASVPRIFIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+ +++ARPG++IG+KG +IEKI+++++ +T  EI L + EV KPEI A L+A+++
Sbjct: 61  SNRVRVKIFTARPGIVIGRKGQEIEKIKEEIAKLTGREILLDIQEVKKPEIEAQLVAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK+AV+ AM  GA+G+++  SGRL G++++R E   +GRVPL TLR 
Sbjct: 121 ALQLERRIAFRRAMKKAVEIAMTLGAEGIRIQCSGRLGGSDIARREWQRKGRVPLHTLRE 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDS 211
           +IDYG + A+T YG  G+K ++  +DE + +
Sbjct: 181 NIDYGFSEAQTVYGKIGVKCWICKKDETNGA 211


>gi|94987408|ref|YP_595341.1| 30S ribosomal protein S3 [Lawsonia intracellularis PHE/MN1-00]
 gi|123262113|sp|Q1MPQ7|RS3_LAWIP RecName: Full=30S ribosomal protein S3
 gi|94731657|emb|CAJ55020.1| ribosomal protein S3 [Lawsonia intracellularis PHE/MN1-00]
          Length = 213

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 110/212 (51%), Positives = 150/212 (70%), Gaps = 2/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG N  W SRWF++  +Y   ++ED KIR Y++  L  AG++K+ IER 
Sbjct: 1   MGQKVHPYGFRLGYNKNWQSRWFSK-KDYANFIYEDYKIRSYIKKLLYSAGISKMEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                +++ +ARPG++IG+KG +IEK+R +L      E  L V EV +PE++A L+A++I
Sbjct: 60  GGKICLMLSTARPGIVIGRKGVEIEKLRLELRKNFGQEFSLEVTEVRRPEVDAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMKR V  A +FGA+G+K+  SGRL GAE++RTE Y +GRVPLQTLRA
Sbjct: 120 AMQLERRVAFRRAMKRTVSMARKFGAEGIKITCSGRLAGAEIARTEWYRDGRVPLQTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYG A A T YG  G+KV++  + EV D +
Sbjct: 180 DIDYGFAEAHTTYGIIGVKVWI-YKGEVLDKE 210


>gi|94968260|ref|YP_590308.1| SSU ribosomal protein S3P [Candidatus Koribacter versatilis
           Ellin345]
 gi|123256699|sp|Q1ISB6|RS3_ACIBL RecName: Full=30S ribosomal protein S3
 gi|94550310|gb|ABF40234.1| SSU ribosomal protein S3P [Candidatus Koribacter versatilis
           Ellin345]
          Length = 223

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 112/221 (50%), Positives = 153/221 (69%), Gaps = 8/221 (3%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG    W SRWF    +Y  LL ED+K++  L+  LK AGV+ I +ER 
Sbjct: 1   MGQKVHPYGFRLGYTKPWKSRWFIE-RDYDKLLLEDVKLKAELKEKLKSAGVSSIEVERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               RII+ +ARPG+IIG+KG +I+K++ +L   TN E+++ + EV KPE++A L+A+SI
Sbjct: 60  GNKLRIIIRTARPGIIIGRKGAEIDKLKGELQKRTNREVYIDIQEVHKPELDAQLVAESI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAM+++V SA+RFG  G+KV  SGRLNG E++R+E YL+GR+PL TLRA
Sbjct: 120 ALQLEKRVGFRRAMRKSVDSALRFGCKGIKVRVSGRLNGNEIARSEWYLQGRLPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDYG A A T YG  G+K +V            +PAA+ R
Sbjct: 180 DIDYGFAEARTTYGVIGVKAWVY-------KGEILPAAKKR 213


>gi|157164217|ref|YP_001467714.1| 30S ribosomal protein S3 [Campylobacter concisus 13826]
 gi|171855078|sp|A7ZG06|RS3_CAMC1 RecName: Full=30S ribosomal protein S3
 gi|157101407|gb|EAT98159.2| ribosomal protein S3 [Campylobacter concisus 13826]
          Length = 232

 Score =  225 bits (574), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 144/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF         + ED KIR +L+  L  AG+++ILIERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPTKQSLPENIGEDYKIRAFLKKKLYYAGISQILIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPG+IIGKKG D+E ++ ++S +   E+++++ E  K + +A L A+++
Sbjct: 61  AKKLRVTVVAARPGIIIGKKGQDVENLKNEVSKLIGKEVNVNIKEERKAQASAQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q A + GA G+K+  +GRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 AMQLEKRVAFRRAMKKVIQGAQKSGAKGIKISVAGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG+ GIKV++
Sbjct: 181 KIDYGVAEAHTTYGNIGIKVWI 202


>gi|154174323|ref|YP_001409148.1| 30S ribosomal protein S3 [Campylobacter curvus 525.92]
 gi|171769454|sp|A7H106|RS3_CAMC5 RecName: Full=30S ribosomal protein S3
 gi|112802261|gb|EAT99605.1| ribosomal protein S3 [Campylobacter curvus 525.92]
          Length = 232

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 144/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF   +     + ED KIR +L+  L  AG+++ILIERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPTKASLPENIGEDYKIRAFLKKKLYYAGISQILIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPG+IIGKKG D+E ++  +S +   E+++++ E  K + +A L A+++
Sbjct: 61  AKKLRVTVVAARPGIIIGKKGQDVENLKNDVSKLIGKEVNVNIKEERKAQASAQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q A + GA G+K+  +GRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 AMQLEKRVAFRRAMKKVIQGAQKSGAKGIKISVAGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG+ GIKV++
Sbjct: 181 KIDYGVAEAHTTYGNIGIKVWI 202


>gi|255659509|ref|ZP_05404918.1| ribosomal protein S3 [Mitsuokella multacida DSM 20544]
 gi|260848061|gb|EEX68068.1| ribosomal protein S3 [Mitsuokella multacida DSM 20544]
          Length = 222

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 150/202 (74%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG+  TW+++W+A   ++   LHED+KIR+YL+  L+ AGV++I  ER+
Sbjct: 1   MGQKVNPHGIRLGIVKTWDAKWYA-DKDFADNLHEDIKIRDYLKNSLQAAGVSRIETERS 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ +++A+PG++IG+ G+ IE+I++ L N T   + +++ E+ +P+++ATL+A++I
Sbjct: 60  KNRLKLTIHTAKPGMVIGRGGSGIEQIKEGLKNYTTKRVDINIAEIKQPDMDATLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR+ FRRAMK+AV   MR GA G+K+  SGRL GAE++R E Y EG +PL TLRA
Sbjct: 120 AQQLERRIAFRRAMKQAVGRTMRLGAKGIKIACSGRLGGAEIARKESYREGSIPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYGTA A T YG  GIKV++
Sbjct: 180 DIDYGTAEAHTTYGRIGIKVWI 201


>gi|257458702|ref|ZP_05623826.1| ribosomal protein S3 [Campylobacter gracilis RM3268]
 gi|257443891|gb|EEV19010.1| ribosomal protein S3 [Campylobacter gracilis RM3268]
          Length = 231

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 144/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF   +     + ED KIR++L+  L  AG+++ILIERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPSKATLSESIGEDYKIRKFLKAKLYYAGISQILIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ + +ARPG+IIGKKG ++E +R ++  + N +I +++ E  K   NA L A+++
Sbjct: 61  AKKIRVTIVAARPGIIIGKKGGEVENLRSEVVKLVNKDIAINIKEERKVGSNALLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK+ +Q A + GA G+K+  +GRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 AMQLERRVAFRRAMKKVIQGAQKAGAKGIKICVAGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG+ GIKV++
Sbjct: 181 RIDYGFAEAHTTYGNIGIKVWI 202


>gi|71065065|ref|YP_263792.1| 30S ribosomal protein S3 [Psychrobacter arcticus 273-4]
 gi|91207834|sp|Q4FUF0|RS3_PSYA2 RecName: Full=30S ribosomal protein S3
 gi|71038050|gb|AAZ18358.1| SSU ribosomal protein S3P [Psychrobacter arcticus 273-4]
          Length = 242

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 108/215 (50%), Positives = 154/215 (71%), Gaps = 1/215 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLGV    N+ W+A   +Y   L  D+++REYL+  L  A ++KI+IER 
Sbjct: 1   MGQKVHPIGIRLGVVKKHNANWYASPKQYSEYLINDIQVREYLRKKLDSAMISKIMIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I + +ARPG++IGKKG DIE+++K+L+ M      +++ E+  P+++A L+A+ I
Sbjct: 61  TGAAKITIATARPGIVIGKKGEDIERLQKELTKMMGVPAQVNIEEITSPDLDAHLVAEGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ++MR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNSMRSGAKGIKVELSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDY +  AET YG+ G+KV++  R E+ D  +++
Sbjct: 181 DIDYSSVRAETTYGTIGVKVWI-FRGEILDGMNSV 214


>gi|304315946|ref|YP_003851091.1| ribosomal protein S3 [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302777448|gb|ADL68007.1| ribosomal protein S3 [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 221

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 103/203 (50%), Positives = 152/203 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP   R+GV+  W+++WFA+  ++  LL ED+KIR++++  +  +GV KI IER 
Sbjct: 1   MGQKINPRGLRVGVSQDWDAKWFAKDKDFSDLLIEDIKIRDFIKNKIYASGVPKIEIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I VY+A+PG++IGK G  IE++R+++  MTN ++ +++ EV  PE++A L+A++I
Sbjct: 61  ANRIKIDVYTAKPGMVIGKGGAGIEELRQEIEKMTNKKVIINIVEVKNPELDAQLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK+++  AM+ GA G+K+  SGRL GAE++RTE Y EG VPLQTLRA
Sbjct: 121 ASQLERRISFRRAMKQSISRAMKQGAKGIKIACSGRLAGAEIARTERYHEGVVPLQTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVS 203
           +IDYG A A T YG  G+KV+++
Sbjct: 181 NIDYGFAEANTTYGKIGVKVWIN 203


>gi|188584842|ref|YP_001916387.1| SSU ribosomal protein S3P [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|226697735|sp|B2A4E5|RS3_NATTJ RecName: Full=30S ribosomal protein S3
 gi|179349529|gb|ACB83799.1| SSU ribosomal protein S3P [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 229

 Score =  225 bits (573), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 110/212 (51%), Positives = 149/212 (70%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  R+GV   W S W+A    Y  L+HED+KIREY++  L  A V+ I I+R 
Sbjct: 1   MGQKINPIGLRIGVIKDWQSNWYAD-KNYTELVHEDIKIREYIENKLFNADVSAIQIDRA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ +++A+PG++IGK G+ +EK+R  + N+T  ++H++V EV  PE++A L A+SI
Sbjct: 60  ANRIKVTLHTAKPGMVIGKGGSGVEKLRSDIENLTGKKVHINVMEVKTPELDAHLAAKSI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A  LERRV FRRAMK+AV  AMR GA G+KV+ SGRL GAE+SRTE Y EG VPLQTLRA
Sbjct: 120 AIALERRVAFRRAMKQAVGRAMRQGAKGIKVMCSGRLGGAEMSRTEWYTEGNVPLQTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYG   A TAYG  G+K +++  + + + D
Sbjct: 180 DIDYGMVEANTAYGQIGVKCWINKGEVLPEVD 211


>gi|310659496|ref|YP_003937217.1| 30S ribosomal protein S3 [Clostridium sticklandii DSM 519]
 gi|308826274|emb|CBH22312.1| 30S ribosomal subunit protein S3 [Clostridium sticklandii]
          Length = 263

 Score =  224 bits (572), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 106/228 (46%), Positives = 156/228 (68%), Gaps = 7/228 (3%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   R+G+N  W+S+WFA   ++ A L ED KIR+ L+  L  +G+ KI IER+
Sbjct: 1   MGQKVNPHGLRVGINKDWDSKWFANKGDFAAFLQEDFKIRKVLKKKLYLSGIPKIEIERS 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ +++A+PG++IGK G  IE+I+ ++  MT  ++ +++ EV +PE+++ L+A++I
Sbjct: 61  GNKVKLNIFTAKPGMVIGKGGQGIEEIKSEVEKMTGKQVFVNILEVKRPEMDSQLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A  LERRV FRRAMK+A+Q AMR GA G+KV  SGRL GAE++RTE Y EG VPL TLRA
Sbjct: 121 ALALERRVAFRRAMKQAMQRAMRSGAKGIKVSTSGRLGGAEMARTEGYSEGNVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV-------SLRDEVSDSDSTIPAAEHR 221
            IDYG A A+T YG  G+KV++       + +    + DS +P  E +
Sbjct: 181 DIDYGFAEADTTYGKLGVKVWICKGEILPTRKGPKRELDSVMPKEEKK 228


>gi|294496991|ref|YP_003560691.1| 30S ribosomal protein S3 [Bacillus megaterium QM B1551]
 gi|295702356|ref|YP_003595431.1| 30S ribosomal protein S3 [Bacillus megaterium DSM 319]
 gi|294346928|gb|ADE67257.1| 30S ribosomal protein S3 [Bacillus megaterium QM B1551]
 gi|294800015|gb|ADF37081.1| 30S ribosomal protein S3 [Bacillus megaterium DSM 319]
          Length = 218

 Score =  224 bits (572), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 147/202 (72%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+GV   W SRWFA G +Y  LLHEDLK+REY+   L  A V+K+ IER 
Sbjct: 1   MGQKVNPVGLRVGVIRDWESRWFA-GKDYADLLHEDLKVREYIAKRLNDAAVSKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +++A+PG++IGK GT++E +RK L+ +T   +H+++ E+ + +++A L+A++I
Sbjct: 60  ANRLNVTIHTAKPGMVIGKGGTEVESLRKALNQLTGKRVHINILEIKRADLDAKLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRA K+A+Q +MR GA G+K + SGRL GA+++R+E Y EG VPL TLRA
Sbjct: 120 ARQLENRVSFRRAQKQAIQRSMRAGAQGIKTMVSGRLGGADIARSEYYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY  A A+T YG  G+KV++
Sbjct: 180 DIDYAHAEADTTYGKLGVKVWI 201


>gi|289548385|ref|YP_003473373.1| ribosomal protein S3 [Thermocrinis albus DSM 14484]
 gi|289182002|gb|ADC89246.1| ribosomal protein S3 [Thermocrinis albus DSM 14484]
          Length = 234

 Score =  224 bits (572), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 103/203 (50%), Positives = 150/203 (73%), Gaps = 1/203 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK +PI FRLG+   W S+W+A G +Y  LLHEDLKI+ Y++     AG++++++ER 
Sbjct: 1   MGQKTHPIGFRLGIIKDWTSKWYAEGKDYTQLLHEDLKIKRYIKERYASAGISRVVVERM 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEI-HLSVNEVPKPEINATLIAQS 119
            +  ++ + +ARPG+IIG+KG ++E+++K L  M   +I  ++V+EV  PE++A L+A+ 
Sbjct: 61  AEKVKVRILAARPGIIIGRKGAEVEQLKKDLEKMAPGKIITITVDEVRTPELDAQLVAEE 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IA Q+ERRV  RRAMKRA+ +A++ GA GVKV   GR+ GAEL+R E +L GR+PLQTLR
Sbjct: 121 IALQIERRVSHRRAMKRAIDNAIKAGAKGVKVQVKGRIGGAELARAEWFLVGRMPLQTLR 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYV 202
           A IDYG AVA+T YG  G+KV++
Sbjct: 181 ADIDYGFAVAQTKYGVLGVKVWI 203


>gi|83648846|ref|YP_437281.1| 30S ribosomal protein S3 [Hahella chejuensis KCTC 2396]
 gi|123753505|sp|Q2S918|RS3_HAHCH RecName: Full=30S ribosomal protein S3
 gi|83636889|gb|ABC32856.1| ribosomal protein S3 [Hahella chejuensis KCTC 2396]
          Length = 227

 Score =  224 bits (572), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+    NS W+A    Y   L  D+K+RE+L   L++A V+K++IER 
Sbjct: 1   MGQKVNPVGIRLGIVKDHNSVWYADKKNYSDHLLTDIKVREFLMKKLEKASVSKVIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N +I +++ARPG++IGKKG D++++R+++  +    +H+++ E+ KP+++A L+A  +
Sbjct: 61  PQNAKITIHTARPGIVIGKKGEDVDRLRQEVGELMKVPVHINIEEIRKPDLDAKLVASGV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+K+   GRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AGQLERRVMFRRAMKRAVQNAMRQGAKGIKIQVGGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A T YG  G+KV++
Sbjct: 181 DIDYATHEAHTTYGVIGVKVWI 202


>gi|119947120|ref|YP_944800.1| ribosomal protein S3 [Psychromonas ingrahamii 37]
 gi|152060897|sp|A1T0D6|RS3_PSYIN RecName: Full=30S ribosomal protein S3
 gi|119865724|gb|ABM05201.1| SSU ribosomal protein S3P [Psychromonas ingrahamii 37]
          Length = 230

 Score =  224 bits (572), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   ++S W+A   ++ A L  D +IR++L   LK A ++KI IER 
Sbjct: 1   MGQKVHPNGIRLGITKAFSSTWYAGKKDFAANLFSDFEIRKFLTEKLKNASLSKITIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ M      ++++EV KPE++A L+A SI
Sbjct: 61  AKSVRVTIHTARPGVVIGKKGEDVEKLRTAIAKMAGVPAQINISEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           + QLERRV+FRRAMKRAVQ+AMR GA G+KV   GRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 SSQLERRVMFRRAMKRAVQNAMRLGAKGIKVQVGGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYSTSEAHTVYGIIGVKVWI 202


>gi|317181035|dbj|BAJ58821.1| 30S ribosomal protein S3 [Helicobacter pylori F32]
          Length = 234

 Score =  224 bits (572), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RLG+N  W SRWF       + + ED KIR++L+  L  AGV++++IER 
Sbjct: 1   MGQKVNPVGLRLGINRNWTSRWFPSARTAPSNIDEDNKIRKFLKKELYYAGVSEVVIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPGLIIGKKG DIEK+++ L  +   E+ +++ EV  P+ ++ L A+++
Sbjct: 61  AKKLRVTVVAARPGLIIGKKGVDIEKVKEGLKTLIKKEVSINIKEVKCPQADSQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q+A++ GA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 ATQLEKRVAFRRAMKKVMQAALKSGAKGIKVRVSGRLAGAEIARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAMTVYGIIGVKVWI 202


>gi|269468081|gb|EEZ79795.1| ribosomal protein S3 [uncultured SUP05 cluster bacterium]
          Length = 230

 Score =  224 bits (572), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 101/210 (48%), Positives = 152/210 (72%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG+   W+S+W+A   +Y   L  D+++R++L   LK A V++I IER 
Sbjct: 1   MGQKVNPKGIRLGIIRDWDSKWYANSQDYSKYLLSDIEVRDFLFEKLKSASVSRITIERL 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
             N ++ +++ARPG++IGKKG DIE+++  +S M    +H+++ E+ KPE++A L+A++I
Sbjct: 61  ANNAKVTIHTARPGIVIGKKGADIEQLKAIVSKMMGITVHINIEEIKKPELDARLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV++RRA+KR + +A R GA G+KV+ SGRLNGAE++R+E Y EGRVPL T RA
Sbjct: 121 AQQLEKRVMYRRAVKRVLGNATRLGAQGIKVMVSGRLNGAEIARSEWYREGRVPLHTFRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            +DY +  A T YG  GIKV++  + E+ D
Sbjct: 181 DVDYSSYGANTQYGVIGIKVWI-FKGEILD 209


>gi|15612703|ref|NP_241006.1| 30S ribosomal protein S3 [Bacillus halodurans C-125]
 gi|7388207|sp|Q9Z9K8|RS3_BACHD RecName: Full=30S ribosomal protein S3
 gi|4512410|dbj|BAA75277.1| rpsC homologue (identity of 87% to B. subtilis ) [Bacillus
           halodurans]
 gi|10172752|dbj|BAB03859.1| 30S ribosomal protein S3 [Bacillus halodurans C-125]
          Length = 219

 Score =  224 bits (572), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 105/208 (50%), Positives = 150/208 (72%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+GV   W S+W+A   +Y  LLHED+KIREY++  LK A V+KI IER 
Sbjct: 1   MGQKVNPVGLRVGVIRDWESKWYAE-KDYADLLHEDIKIREYIENRLKDASVSKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I + +A+PG++IGK G+++E +RK L+ +T   +H+++ EV + +++A L+A++I
Sbjct: 60  ANRVNITISTAKPGMVIGKGGSEVEALRKALNELTGKRVHINIFEVKQADLDAKLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE R+ FRRAMK+A+Q  MR GA G+K   SGRL GA+++R E Y EG VPL TLRA
Sbjct: 120 ARQLENRISFRRAMKQAIQRTMRAGAQGIKTQVSGRLGGADIARAEHYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDYGTA A+T YG  G+K+++  R EV
Sbjct: 180 DIDYGTAEADTTYGKLGVKIWI-YRGEV 206


>gi|313677126|ref|YP_004055122.1| SSU ribosomal protein s3p [Marivirga tractuosa DSM 4126]
 gi|312943824|gb|ADR23014.1| SSU ribosomal protein S3P [Marivirga tractuosa DSM 4126]
          Length = 244

 Score =  224 bits (571), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 102/203 (50%), Positives = 150/203 (73%), Gaps = 1/203 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFA-RGSEYGALLHEDLKIREYLQCHLKQAGVAKILIER 59
           MGQK+NPI FRLG+   W S W+  +G  +   L ED KIREY+   + + G++KI+IER
Sbjct: 1   MGQKVNPIGFRLGIVRGWESNWYGGKGLSFSDKLIEDQKIREYILARIPKGGISKIVIER 60

Query: 60  THKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQS 119
           T K   + V++ARPG++IGK G++++K++++L  +TN ++ +++ E+ +PE++A LI +S
Sbjct: 61  TLKRITLTVHTARPGVVIGKGGSEVDKLKEELKKLTNKDVQINIFEIKRPELDAKLIGES 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           I QQL+ R+ +RRAMK+A+ SAMR GA G+K+  SGRL GAE++RTE Y EGR+PL TLR
Sbjct: 121 IGQQLKARISYRRAMKQAIASAMRVGAQGIKIKVSGRLGGAEMARTEMYKEGRIPLHTLR 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYV 202
           A IDY T  A T YG+ G+KV+V
Sbjct: 181 ADIDYETTPAHTIYGTIGVKVWV 203


>gi|148652244|ref|YP_001279337.1| 30S ribosomal protein S3 [Psychrobacter sp. PRwf-1]
 gi|189045300|sp|A5WCJ6|RS3_PSYWF RecName: Full=30S ribosomal protein S3
 gi|148571328|gb|ABQ93387.1| SSU ribosomal protein S3P [Psychrobacter sp. PRwf-1]
          Length = 247

 Score =  224 bits (571), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 109/215 (50%), Positives = 152/215 (70%), Gaps = 1/215 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLGV    N+ W+A   +Y   L  DL++R+YL+  L  A ++ I+IER 
Sbjct: 1   MGQKVHPIGIRLGVVKKHNANWYADPKQYSEYLLNDLQVRDYLRKKLDNAMISHIMIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I + +ARPG++IGKKG DIEK++K+L+ M      +++ E+  P+++A L+A+ I
Sbjct: 61  TGAAKITISTARPGIVIGKKGEDIEKLQKELTKMMGVPAQVNIEEITSPDLDARLVAEGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ++MR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNSMRSGAQGIKVELSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDY +  AET YG+ G+KV+V  R E+ D   ++
Sbjct: 181 DIDYASVRAETTYGTIGVKVWV-FRGEILDGMDSV 214


>gi|288554731|ref|YP_003426666.1| 30S ribosomal protein S3 [Bacillus pseudofirmus OF4]
 gi|288545891|gb|ADC49774.1| 30S ribosomal protein S3 [Bacillus pseudofirmus OF4]
          Length = 219

 Score =  224 bits (571), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 107/214 (50%), Positives = 151/214 (70%), Gaps = 2/214 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP   R+GV   W S+W+A   +Y  LLHED+KIREY++  LK A V+K+ IER 
Sbjct: 1   MGQKINPTGLRVGVIKDWESKWYAE-KDYADLLHEDIKIREYIEKRLKDASVSKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + V +A+PG++IGK G+++E +RK L+ +T   +H+++ EV + +++A L+A++I
Sbjct: 60  ANRVNVTVSTAKPGMVIGKGGSEVEALRKALNELTGKRVHINIFEVKQADLDAKLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE R+ FRRAMK+A+Q  MR GA G+K   SGRL GA+++R E Y EG VPL TLRA
Sbjct: 120 ARQLENRISFRRAMKQAIQRTMRSGAKGIKTQVSGRLGGADIARAEHYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDST 214
            IDYGTA A+T YG  GIK+++  R EV  +  T
Sbjct: 180 DIDYGTAEADTTYGKLGIKIWI-YRGEVLPTKGT 212


>gi|27904936|ref|NP_778062.1| 30S ribosomal protein S3 [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29427413|sp|P59447|RS3_BUCBP RecName: Full=30S ribosomal protein S3
 gi|27904334|gb|AAO27167.1| 30S ribosomal protein S3 [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 235

 Score =  224 bits (571), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 106/219 (48%), Positives = 153/219 (69%), Gaps = 1/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WNS WF+   ++  +L  D ++R +L+  L +A V++I+IER 
Sbjct: 1   MGQKVHPNGMRLGIIKHWNSVWFSNSKDFAKILDSDYQVRLFLRKELFKASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +YSARPG++IGKKG D+EK+R  ++N+T     +++ E+ KPE++A L+A +I
Sbjct: 61  SKSIRVTIYSARPGIVIGKKGEDVEKLRLSITNITGVPTQINIAEIRKPELDAKLVADNI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERR++FRRAMKRAVQ+AMR GA G+KV  SGRL G E++R E Y EGRVPL TLRA
Sbjct: 121 VSQLERRIMFRRAMKRAVQNAMRQGAKGIKVEISGRLGGTEIARREWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            I+Y  + A T YG  G+KV++  + E+     +IP  E
Sbjct: 181 DIEYNVSEAHTTYGVIGVKVWI-FKGEILGGIGSIPKIE 218


>gi|304413151|ref|ZP_07394624.1| 30S ribosomal subunit protein S3 [Candidatus Regiella insecticola
           LSR1]
 gi|304283994|gb|EFL92387.1| 30S ribosomal subunit protein S3 [Candidatus Regiella insecticola
           LSR1]
          Length = 246

 Score =  224 bits (571), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 106/203 (52%), Positives = 148/203 (72%), Gaps = 1/203 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFA-RGSEYGALLHEDLKIREYLQCHLKQAGVAKILIER 59
           MGQK+NP  FRLG+   W+S W+A    E+   L  D KIR+ L   L +A V++I+IER
Sbjct: 1   MGQKVNPNGFRLGIVKDWDSTWYAVNDKEFADNLAGDKKIRQVLMEKLDKASVSRIVIER 60

Query: 60  THKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQS 119
             K+ R+ +++ARPG++IGKKG D+EK+RKK++++      +++ E+ KP++ A L+A S
Sbjct: 61  PAKSIRVTIHTARPGIVIGKKGEDVEKLRKKVTDIAAVPSQINIKEIRKPDLEAKLVADS 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           +A QLERRV+FRRAMKRAVQ+AMR GA G+++  SGRL GAE++RTE Y EGRVPL TLR
Sbjct: 121 VASQLERRVMFRRAMKRAVQNAMRAGAKGIRINVSGRLGGAEIARTEWYREGRVPLHTLR 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYV 202
           A IDY  + A T YG  G+KV++
Sbjct: 181 ADIDYSLSEAHTTYGVIGVKVWI 203


>gi|220930971|ref|YP_002507879.1| ribosomal protein S3 [Halothermothrix orenii H 168]
 gi|254764533|sp|B8D0D0|RS3_HALOH RecName: Full=30S ribosomal protein S3
 gi|219992281|gb|ACL68884.1| ribosomal protein S3 [Halothermothrix orenii H 168]
          Length = 214

 Score =  224 bits (571), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 101/203 (49%), Positives = 149/203 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   R+GV   W+++W+A  + Y  LL EDLKIR +++  +  AG+++I+IER 
Sbjct: 1   MGQKVHPHGLRVGVIKDWDAKWYADKNNYADLLQEDLKIRNHVKNKMYDAGISRIVIERV 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ VY+ARPG++IG+ G++++ +RK +  MT   + ++V EV  PE++A L+A++I
Sbjct: 61  ANRLKLDVYTARPGMVIGRGGSEVDALRKDIEQMTGKNVQINVVEVEDPELDAQLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK+A+  AMR GA+G KV +SGRL GAE++RTE Y +GRVPL TLRA
Sbjct: 121 AAQLERRISFRRAMKQAMNRAMRMGAEGFKVQSSGRLGGAEMARTEGYSDGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVS 203
            IDYG A A T YG  G+KV+++
Sbjct: 181 DIDYGFAEAYTTYGKIGVKVWIN 203


>gi|323706456|ref|ZP_08118017.1| ribosomal protein S3 [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534176|gb|EGB23966.1| ribosomal protein S3 [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 221

 Score =  224 bits (571), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 104/203 (51%), Positives = 151/203 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP   R+GV+  W ++WFA+  ++  LL ED+KIR+Y++  +  +GV KI IER 
Sbjct: 1   MGQKINPRGLRVGVSQDWYAKWFAKDKDFSDLLIEDIKIRDYIKNKIYASGVPKIEIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I VY+A+PG++IGK G  IE++R+++  MTN ++ +++ EV  PE++A L+A++I
Sbjct: 61  ANRIKIDVYTAKPGMVIGKGGAGIEELRQEIEKMTNKKVVINIVEVKNPELDAQLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK+++  AM+ GA G+K+  SGRL GAE++RTE Y EG VPLQTLRA
Sbjct: 121 ASQLERRISFRRAMKQSIARAMKQGAKGIKIACSGRLAGAEIARTERYHEGVVPLQTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVS 203
           +IDYG A A T YG  G+KV+++
Sbjct: 181 NIDYGFAEANTTYGKIGVKVWIN 203


>gi|119468274|ref|ZP_01611400.1| 30S ribosomal subunit protein S3 [Alteromonadales bacterium TW-7]
 gi|119448267|gb|EAW29531.1| 30S ribosomal subunit protein S3 [Alteromonadales bacterium TW-7]
          Length = 233

 Score =  224 bits (571), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG++  W S W+A   ++   L  D K+R +L   LK A V+KI+IER 
Sbjct: 1   MGQKVHPTGIRLGISKPWVSTWYASSKDFSDQLFGDHKVRAFLTKELKTASVSKIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R+ ++ +      ++++EV KPE++A L+A  I
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRQAVTKIAGVPAQINISEVRKPELDAQLVADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKR+VQ+AMR G+ G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRSVQNAMRIGSKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYATSEALTTYGIIGVKVWI 202


>gi|254516917|ref|ZP_05128975.1| ribosomal protein S3 [gamma proteobacterium NOR5-3]
 gi|219674422|gb|EED30790.1| ribosomal protein S3 [gamma proteobacterium NOR5-3]
          Length = 222

 Score =  224 bits (571), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 107/214 (50%), Positives = 153/214 (71%), Gaps = 1/214 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+     S W+A  + Y   L  DL++R +++  L  A V++I+IER 
Sbjct: 1   MGQKVHPTGIRLGIVKDHTSVWYADRNNYAKQLVNDLQVRSFIEKKLDNASVSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI +++ARPG++IGKKG D++K+RK L+      +H+++ E+ KP+++A L+AQ++
Sbjct: 61  AQTARITIHTARPGIVIGKKGEDVDKLRKVLAEKMGVPVHINIEEIRKPDLDARLVAQNV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKR VQ+AMR GA+G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRVVQNAMRQGAEGIKVQVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDST 214
            IDY T  A T YG  G+KV++  + EV  +D +
Sbjct: 181 DIDYATYEAATTYGILGVKVWI-FKGEVLGADES 213


>gi|251799636|ref|YP_003014367.1| ribosomal protein S3 [Paenibacillus sp. JDR-2]
 gi|247547262|gb|ACT04281.1| ribosomal protein S3 [Paenibacillus sp. JDR-2]
          Length = 220

 Score =  224 bits (570), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 107/217 (49%), Positives = 155/217 (71%), Gaps = 3/217 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+G+   W S+W+A G ++G LL ED+KIREYL+  LK A V+ I IER 
Sbjct: 1   MGQKVNPVGLRIGIIRDWESKWYA-GKDFGDLLLEDVKIREYLKNKLKDAAVSHIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSE-IHLSVNEVPKPEINATLIAQS 119
                + + +A+PG++IGK G+++E +R +L  +T  + +H++++E+ + +++A L+A+S
Sbjct: 60  ANRVNVTINTAKPGMVIGKGGSEVESLRTELGKITKGKKVHINISEIKQADLDAILVAES 119

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IAQQLERRV FRRA+K+A+Q +MR GA G+K   SGRL GAE++R+E Y EG VPL TLR
Sbjct: 120 IAQQLERRVSFRRALKQAIQRSMRAGAKGIKTAVSGRLGGAEIARSEGYSEGTVPLHTLR 179

Query: 180 AHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIP 216
           A IDYGTA A T YG  G+KV++  R EV  +    P
Sbjct: 180 ADIDYGTAEAHTTYGRIGVKVWI-YRGEVLPAKKKAP 215


>gi|226309814|ref|YP_002769708.1| 30S ribosomal protein S3 [Brevibacillus brevis NBRC 100599]
 gi|254764515|sp|C0ZII6|RS3_BREBN RecName: Full=30S ribosomal protein S3
 gi|226092762|dbj|BAH41204.1| 30S ribosomal protein S3 [Brevibacillus brevis NBRC 100599]
          Length = 220

 Score =  224 bits (570), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 100/208 (48%), Positives = 153/208 (73%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P+  R+GV   W S+W+A   ++  LLHEDLKIR+Y++  LK A V+ I IER 
Sbjct: 1   MGQKVSPVGLRIGVIRDWESKWYA-DKDFATLLHEDLKIRKYVKGRLKDAAVSTIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +++A+PG++IGK G+++E +RK L+++T   +H+++NE+ +P+++ATL+A++I
Sbjct: 60  ANRVNVTIHTAKPGMVIGKGGSEVETLRKTLTDLTGKRVHININEIKRPDLDATLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE R+ FRRA K+++   +R GA G+K + SGRL GA+++R+E Y EG VPL TLRA
Sbjct: 120 ARQLENRISFRRAQKQSITRTLRSGAKGIKTLVSGRLGGADIARSEGYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDYGTA A T YG  G+KV++  R EV
Sbjct: 180 DIDYGTAEAHTTYGRIGVKVWI-YRGEV 206


>gi|313895402|ref|ZP_07828959.1| ribosomal protein S3 [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312976297|gb|EFR41755.1| ribosomal protein S3 [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 223

 Score =  224 bits (570), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 102/221 (46%), Positives = 155/221 (70%), Gaps = 1/221 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG+   W++RW+A   ++   LHED+KIR+YL+  L+ AGV ++  ER+
Sbjct: 1   MGQKVNPHGIRLGIVKDWDARWYA-DKDFAQNLHEDIKIRDYLKKSLQTAGVPRVETERS 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ +++A+PG++IG+ G+ IE+I++ L  +T+  + +++ E+ +P+++ATL+A++I
Sbjct: 60  KNRLKLTIHTAKPGMVIGRGGSGIEQIKEGLKGLTDKRVDINIAEIKQPDLDATLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK+AV   MR GA G+K+  SGRL GAE++R E Y EG +PL TLRA
Sbjct: 120 AAQLERRIAFRRAMKQAVGRTMRLGAKGIKIAVSGRLGGAEIARRESYREGSIPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDYGTA A T YG  GIKV++   + + D      AA+ R
Sbjct: 180 DIDYGTAEAHTTYGRIGIKVWIFKSEVLPDKKQQPKAAKER 220


>gi|30018386|ref|NP_830017.1| 30S ribosomal protein S3 [Bacillus cereus ATCC 14579]
 gi|30260307|ref|NP_842684.1| 30S ribosomal protein S3 [Bacillus anthracis str. Ames]
 gi|42779197|ref|NP_976444.1| 30S ribosomal protein S3 [Bacillus cereus ATCC 10987]
 gi|47525372|ref|YP_016721.1| 30S ribosomal protein S3 [Bacillus anthracis str. 'Ames Ancestor']
 gi|49183150|ref|YP_026402.1| 30S ribosomal protein S3 [Bacillus anthracis str. Sterne]
 gi|49481663|ref|YP_034468.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|52145104|ref|YP_081727.1| 30S ribosomal protein S3 [Bacillus cereus E33L]
 gi|65317568|ref|ZP_00390527.1| COG0092: Ribosomal protein S3 [Bacillus anthracis str. A2012]
 gi|118475885|ref|YP_893036.1| 30S ribosomal protein S3 [Bacillus thuringiensis str. Al Hakam]
 gi|206972217|ref|ZP_03233164.1| 30S ribosomal protein S3 [Bacillus cereus AH1134]
 gi|217957691|ref|YP_002336235.1| 30S ribosomal protein S3 [Bacillus cereus AH187]
 gi|218232828|ref|YP_002364965.1| 30S ribosomal protein S3 [Bacillus cereus B4264]
 gi|218895251|ref|YP_002443662.1| ribosomal protein S3 [Bacillus cereus G9842]
 gi|218901320|ref|YP_002449154.1| ribosomal protein S3 [Bacillus cereus AH820]
 gi|222093886|ref|YP_002527936.1| 30S ribosomal protein s3 [Bacillus cereus Q1]
 gi|225862168|ref|YP_002747546.1| 30S ribosomal protein S3 [Bacillus cereus 03BB102]
 gi|227812789|ref|YP_002812798.1| 30S ribosomal protein S3 [Bacillus anthracis str. CDC 684]
 gi|228898869|ref|ZP_04063151.1| 30S ribosomal protein S3 [Bacillus thuringiensis IBL 4222]
 gi|228905913|ref|ZP_04069810.1| 30S ribosomal protein S3 [Bacillus thuringiensis IBL 200]
 gi|228912855|ref|ZP_04076502.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228919066|ref|ZP_04082445.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228925369|ref|ZP_04088465.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931618|ref|ZP_04094524.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228937419|ref|ZP_04100065.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228943922|ref|ZP_04106307.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228950664|ref|ZP_04112798.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228956557|ref|ZP_04118353.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228963216|ref|ZP_04124385.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228970305|ref|ZP_04130964.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976875|ref|ZP_04137287.1| 30S ribosomal protein S3 [Bacillus thuringiensis Bt407]
 gi|228983371|ref|ZP_04143584.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229041021|ref|ZP_04189784.1| 30S ribosomal protein S3 [Bacillus cereus AH676]
 gi|229067881|ref|ZP_04201198.1| 30S ribosomal protein S3 [Bacillus cereus F65185]
 gi|229077416|ref|ZP_04210068.1| 30S ribosomal protein S3 [Bacillus cereus Rock4-2]
 gi|229089247|ref|ZP_04220528.1| 30S ribosomal protein S3 [Bacillus cereus Rock3-42]
 gi|229107802|ref|ZP_04237438.1| 30S ribosomal protein S3 [Bacillus cereus Rock1-15]
 gi|229119778|ref|ZP_04249039.1| 30S ribosomal protein S3 [Bacillus cereus 95/8201]
 gi|229125633|ref|ZP_04254665.1| 30S ribosomal protein S3 [Bacillus cereus BDRD-Cer4]
 gi|229136962|ref|ZP_04265589.1| 30S ribosomal protein S3 [Bacillus cereus BDRD-ST26]
 gi|229142922|ref|ZP_04271363.1| 30S ribosomal protein S3 [Bacillus cereus BDRD-ST24]
 gi|229148525|ref|ZP_04276781.1| 30S ribosomal protein S3 [Bacillus cereus m1550]
 gi|229153894|ref|ZP_04282024.1| 30S ribosomal protein S3 [Bacillus cereus ATCC 4342]
 gi|229159289|ref|ZP_04287313.1| 30S ribosomal protein S3 [Bacillus cereus R309803]
 gi|229176716|ref|ZP_04304120.1| 30S ribosomal protein S3 [Bacillus cereus 172560W]
 gi|229182510|ref|ZP_04309761.1| 30S ribosomal protein S3 [Bacillus cereus BGSC 6E1]
 gi|229188401|ref|ZP_04315449.1| 30S ribosomal protein S3 [Bacillus cereus ATCC 10876]
 gi|229194506|ref|ZP_04321309.1| 30S ribosomal protein S3 [Bacillus cereus m1293]
 gi|229604556|ref|YP_002864767.1| 30S ribosomal protein S3 [Bacillus anthracis str. A0248]
 gi|296500949|ref|YP_003662649.1| 30S ribosomal protein S3 [Bacillus thuringiensis BMB171]
 gi|300119571|ref|ZP_07057115.1| 30S ribosomal protein S3 [Bacillus cereus SJ1]
 gi|301051853|ref|YP_003790064.1| 30S ribosomal protein S3 [Bacillus anthracis CI]
 gi|34098359|sp|Q81J36|RS3_BACCR RecName: Full=30S ribosomal protein S3
 gi|34098360|sp|Q81VS4|RS3_BACAN RecName: Full=30S ribosomal protein S3
 gi|61215459|sp|Q63H84|RS3_BACCZ RecName: Full=30S ribosomal protein S3
 gi|61215553|sp|Q6HPQ2|RS3_BACHK RecName: Full=30S ribosomal protein S3
 gi|61215627|sp|Q73F90|RS3_BACC1 RecName: Full=30S ribosomal protein S3
 gi|152060846|sp|A0R8I6|RS3_BACAH RecName: Full=30S ribosomal protein S3
 gi|29893926|gb|AAP07218.1| SSU ribosomal protein S3P [Bacillus cereus ATCC 14579]
 gi|30253628|gb|AAP24170.1| 30S ribosomal protein S3 [Bacillus anthracis str. Ames]
 gi|42735112|gb|AAS39052.1| ribosomal protein S3 [Bacillus cereus ATCC 10987]
 gi|47500520|gb|AAT29196.1| ribosomal protein S3 [Bacillus anthracis str. 'Ames Ancestor']
 gi|49177077|gb|AAT52453.1| ribosomal protein S3 [Bacillus anthracis str. Sterne]
 gi|49333219|gb|AAT63865.1| ribosomal protein S3 (30S ribosomal protein S3) [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|51978573|gb|AAU20123.1| ribosomal protein S3 (30S ribosomal protein S3) [Bacillus cereus
           E33L]
 gi|118415110|gb|ABK83529.1| SSU ribosomal protein S3P [Bacillus thuringiensis str. Al Hakam]
 gi|206732791|gb|EDZ49966.1| 30S ribosomal protein S3 [Bacillus cereus AH1134]
 gi|217065283|gb|ACJ79533.1| ribosomal protein S3 [Bacillus cereus AH187]
 gi|218160785|gb|ACK60777.1| ribosomal protein S3 [Bacillus cereus B4264]
 gi|218538933|gb|ACK91331.1| ribosomal protein S3 [Bacillus cereus AH820]
 gi|218541179|gb|ACK93573.1| ribosomal protein S3 [Bacillus cereus G9842]
 gi|221237934|gb|ACM10644.1| ribosomal protein S3 (30S ribosomal protein S3) [Bacillus cereus
           Q1]
 gi|225789320|gb|ACO29537.1| 30S ribosomal protein S3 [Bacillus cereus 03BB102]
 gi|227002828|gb|ACP12571.1| 30S ribosomal protein S3 [Bacillus anthracis str. CDC 684]
 gi|228588972|gb|EEK46987.1| 30S ribosomal protein S3 [Bacillus cereus m1293]
 gi|228595075|gb|EEK52846.1| 30S ribosomal protein S3 [Bacillus cereus ATCC 10876]
 gi|228600965|gb|EEK58534.1| 30S ribosomal protein S3 [Bacillus cereus BGSC 6E1]
 gi|228606759|gb|EEK64176.1| 30S ribosomal protein S3 [Bacillus cereus 172560W]
 gi|228624181|gb|EEK80983.1| 30S ribosomal protein S3 [Bacillus cereus R309803]
 gi|228629575|gb|EEK86272.1| 30S ribosomal protein S3 [Bacillus cereus ATCC 4342]
 gi|228634941|gb|EEK91514.1| 30S ribosomal protein S3 [Bacillus cereus m1550]
 gi|228640543|gb|EEK96932.1| 30S ribosomal protein S3 [Bacillus cereus BDRD-ST24]
 gi|228646500|gb|EEL02707.1| 30S ribosomal protein S3 [Bacillus cereus BDRD-ST26]
 gi|228657825|gb|EEL13631.1| 30S ribosomal protein S3 [Bacillus cereus BDRD-Cer4]
 gi|228663679|gb|EEL19258.1| 30S ribosomal protein S3 [Bacillus cereus 95/8201]
 gi|228675651|gb|EEL30859.1| 30S ribosomal protein S3 [Bacillus cereus Rock1-15]
 gi|228694086|gb|EEL47768.1| 30S ribosomal protein S3 [Bacillus cereus Rock3-42]
 gi|228705892|gb|EEL58226.1| 30S ribosomal protein S3 [Bacillus cereus Rock4-2]
 gi|228715240|gb|EEL67099.1| 30S ribosomal protein S3 [Bacillus cereus F65185]
 gi|228727318|gb|EEL78512.1| 30S ribosomal protein S3 [Bacillus cereus AH676]
 gi|228776361|gb|EEM24714.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228782845|gb|EEM31011.1| 30S ribosomal protein S3 [Bacillus thuringiensis Bt407]
 gi|228789414|gb|EEM37334.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228796474|gb|EEM43913.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228803122|gb|EEM49944.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228809015|gb|EEM55500.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar kurstaki
           str. T03a001]
 gi|228815755|gb|EEM61991.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228822252|gb|EEM68234.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar berliner
           ATCC 10792]
 gi|228828046|gb|EEM73774.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834291|gb|EEM79832.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228840591|gb|EEM85853.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228846791|gb|EEM91796.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228853728|gb|EEM98488.1| 30S ribosomal protein S3 [Bacillus thuringiensis IBL 200]
 gi|228860769|gb|EEN05147.1| 30S ribosomal protein S3 [Bacillus thuringiensis IBL 4222]
 gi|229268964|gb|ACQ50601.1| 30S ribosomal protein S3 [Bacillus anthracis str. A0248]
 gi|296322001|gb|ADH04929.1| 30S ribosomal protein S3 [Bacillus thuringiensis BMB171]
 gi|298723043|gb|EFI63941.1| 30S ribosomal protein S3 [Bacillus cereus SJ1]
 gi|300374022|gb|ADK02926.1| 30S ribosomal protein S3 [Bacillus cereus biovar anthracis str. CI]
 gi|324324107|gb|ADY19367.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar finitimus
           YBT-020]
 gi|326937911|gb|AEA13807.1| 30S ribosomal protein S3 [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 219

 Score =  224 bits (570), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 105/208 (50%), Positives = 145/208 (69%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  R+GV   W SRWFA   +Y  LLHED+KIREY+   LK + VAK+ IER 
Sbjct: 1   MGQKVNPIGLRVGVIRDWESRWFAE-KDYATLLHEDIKIREYINVRLKDSAVAKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +++A+PG++IGK GT++E +RK L+ +T   +H+++ EV + ++NA L+ ++I
Sbjct: 60  ANRVNVTIHTAKPGMVIGKGGTEVEALRKALNQLTGKRVHINILEVKRADLNAKLVGENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRA K+ +Q AMR GA G+K   SGRL GA+++R E Y EG VPL TLRA
Sbjct: 120 ARQLENRVSFRRAQKQVIQRAMRAGAKGIKTQVSGRLGGADIARAESYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY    A+T YG  G+KV++  R EV
Sbjct: 180 DIDYAAVEADTTYGKLGVKVWI-YRGEV 206


>gi|225873072|ref|YP_002754531.1| ribosomal protein S3 [Acidobacterium capsulatum ATCC 51196]
 gi|254764506|sp|C1F636|RS3_ACIC5 RecName: Full=30S ribosomal protein S3
 gi|225794492|gb|ACO34582.1| ribosomal protein S3 [Acidobacterium capsulatum ATCC 51196]
          Length = 223

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/202 (53%), Positives = 146/202 (72%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLGVN  W SRWF    +Y  LL ED+ ++  L+  LK AGV+ + +ER 
Sbjct: 1   MGQKVHPYGFRLGVNKPWRSRWFVE-RDYDKLLVEDVHLKRELKEKLKAAGVSSVEVERP 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+I+ +ARPG+IIG+KG +IEK++  L   TN E+ + + EV KPE++A LIA++I
Sbjct: 60  GNKLRLIIRTARPGIIIGRKGAEIEKLKADLQKRTNREVFIDILEVNKPELDAQLIAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAM++AV SA+RFG  G+KV  SGRLNG E++R+E YL+GR+PL TLRA
Sbjct: 120 ALQLEKRVGFRRAMRKAVDSALRFGCKGIKVRVSGRLNGNEIARSEWYLQGRLPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+K +V
Sbjct: 180 DIDYGFAEAHTTYGIIGVKTWV 201


>gi|228989325|ref|ZP_04149316.1| 30S ribosomal protein S3 [Bacillus pseudomycoides DSM 12442]
 gi|228995507|ref|ZP_04155175.1| 30S ribosomal protein S3 [Bacillus mycoides Rock3-17]
 gi|229003132|ref|ZP_04160978.1| 30S ribosomal protein S3 [Bacillus mycoides Rock1-4]
 gi|229015518|ref|ZP_04172516.1| 30S ribosomal protein S3 [Bacillus cereus AH1273]
 gi|229021727|ref|ZP_04178309.1| 30S ribosomal protein S3 [Bacillus cereus AH1272]
 gi|229027964|ref|ZP_04184117.1| 30S ribosomal protein S3 [Bacillus cereus AH1271]
 gi|229074177|ref|ZP_04207223.1| 30S ribosomal protein S3 [Bacillus cereus Rock4-18]
 gi|229083436|ref|ZP_04215784.1| 30S ribosomal protein S3 [Bacillus cereus Rock3-44]
 gi|229094838|ref|ZP_04225843.1| 30S ribosomal protein S3 [Bacillus cereus Rock3-29]
 gi|229100915|ref|ZP_04231719.1| 30S ribosomal protein S3 [Bacillus cereus Rock3-28]
 gi|229113792|ref|ZP_04243227.1| 30S ribosomal protein S3 [Bacillus cereus Rock1-3]
 gi|229170967|ref|ZP_04298568.1| 30S ribosomal protein S3 [Bacillus cereus MM3]
 gi|228612507|gb|EEK69728.1| 30S ribosomal protein S3 [Bacillus cereus MM3]
 gi|228669663|gb|EEL25070.1| 30S ribosomal protein S3 [Bacillus cereus Rock1-3]
 gi|228682494|gb|EEL36567.1| 30S ribosomal protein S3 [Bacillus cereus Rock3-28]
 gi|228688581|gb|EEL42454.1| 30S ribosomal protein S3 [Bacillus cereus Rock3-29]
 gi|228699869|gb|EEL52506.1| 30S ribosomal protein S3 [Bacillus cereus Rock3-44]
 gi|228708947|gb|EEL61074.1| 30S ribosomal protein S3 [Bacillus cereus Rock4-18]
 gi|228733352|gb|EEL84181.1| 30S ribosomal protein S3 [Bacillus cereus AH1271]
 gi|228739595|gb|EEL90009.1| 30S ribosomal protein S3 [Bacillus cereus AH1272]
 gi|228745805|gb|EEL95809.1| 30S ribosomal protein S3 [Bacillus cereus AH1273]
 gi|228758095|gb|EEM07294.1| 30S ribosomal protein S3 [Bacillus mycoides Rock1-4]
 gi|228764236|gb|EEM13115.1| 30S ribosomal protein S3 [Bacillus mycoides Rock3-17]
 gi|228770403|gb|EEM18976.1| 30S ribosomal protein S3 [Bacillus pseudomycoides DSM 12442]
          Length = 219

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/208 (50%), Positives = 145/208 (69%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  R+GV   W SRWFA   +Y  LLHED+KIREY+   LK + VAK+ IER 
Sbjct: 1   MGQKVNPIGLRVGVIRDWESRWFAE-KDYATLLHEDIKIREYITVRLKDSAVAKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +++A+PG++IGK GT++E +RK L+ +T   +H+++ EV + ++NA L+ ++I
Sbjct: 60  ANRVNVTIHTAKPGMVIGKGGTEVEALRKALNQLTGKRVHINILEVKRADLNAKLVGENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRA K+ +Q AMR GA G+K   SGRL GA+++R E Y EG VPL TLRA
Sbjct: 120 ARQLENRVSFRRAQKQVIQRAMRAGAKGIKTQVSGRLGGADIARAESYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY    A+T YG  G+KV++  R EV
Sbjct: 180 DIDYAAVEADTTYGKLGVKVWI-YRGEV 206


>gi|32266883|ref|NP_860915.1| 30S ribosomal protein S3 [Helicobacter hepaticus ATCC 51449]
 gi|61215709|sp|Q7VGD8|RS3_HELHP RecName: Full=30S ribosomal protein S3
 gi|32262935|gb|AAP77981.1| ribosomal protein S3 [Helicobacter hepaticus ATCC 51449]
          Length = 236

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W+SRWF+      + + ED KIR++L+  +  AGV++ +IER 
Sbjct: 1   MGQKVNPIGLRLGINRNWSSRWFSVSQTTPSNILEDHKIRKFLKREMYYAGVSEFIIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+ V ++RPGLIIGKKG DI+K ++ L  + + E+ +++ E  +P+ NA L A++I
Sbjct: 61  ANKIRVTVVASRPGLIIGKKGVDIDKHKEALKKILHKEVFINIKEAKRPQANAQLAAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +Q+AM+ GA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA
Sbjct: 121 ATQLEKRVAFRRAMKKVMQAAMKAGAKGIKVKVSGRLAGAEMARTEWYMEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 181 KIDYGFAEAMTTYGIIGVKVWI 202


>gi|315639315|ref|ZP_07894477.1| 30S ribosomal protein S3 [Campylobacter upsaliensis JV21]
 gi|315480641|gb|EFU71283.1| 30S ribosomal protein S3 [Campylobacter upsaliensis JV21]
          Length = 233

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF   +     + ED KIR +L+  L  AG+++IL+ERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLKRKLYYAGISQILVERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPG+IIGKKG+D++ ++K+L ++   ++++++ E  K   +A L A+S+
Sbjct: 61  AKKLRVTVVAARPGIIIGKKGSDVDILKKELQDLIKKDVNINIKEERKAGSSAQLAAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+R+ FRRAMK+ +Q A + GA G+KV  SGRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 ATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG+ G+KV++
Sbjct: 181 KIDYGFAEARTTYGNIGVKVWI 202


>gi|255326848|ref|ZP_05367924.1| ribosomal protein S3 [Rothia mucilaginosa ATCC 25296]
 gi|283457551|ref|YP_003362134.1| 30S ribosomal protein S3 [Rothia mucilaginosa DY-18]
 gi|255296065|gb|EET75406.1| ribosomal protein S3 [Rothia mucilaginosa ATCC 25296]
 gi|283133549|dbj|BAI64314.1| ribosomal protein S3 [Rothia mucilaginosa DY-18]
          Length = 265

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 107/206 (51%), Positives = 149/206 (72%), Gaps = 4/206 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFAR----GSEYGALLHEDLKIREYLQCHLKQAGVAKIL 56
           MGQKI+P  FRLG+     S+WFA     G  Y   + ED+KIRE L  +L +AGVAK+ 
Sbjct: 1   MGQKIHPNGFRLGITTDHVSKWFADSNKPGERYADFVREDVKIRELLAKNLDRAGVAKVE 60

Query: 57  IERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLI 116
           IERT    R+ +++ARPG++IG++G + ++IR +L  +TN +I L++ EV  P+++A L+
Sbjct: 61  IERTRDRVRVDIHTARPGIVIGRRGAEADRIRGELEKLTNKQIQLNILEVANPDLSAQLV 120

Query: 117 AQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQ 176
           AQSIA+QL  RV FRRAMK+A+QSA R GA G+++  SGRL GAE+SR+E Y EGRVPL 
Sbjct: 121 AQSIAEQLASRVAFRRAMKKAIQSAQRAGAKGIRIQCSGRLGGAEMSRSEFYREGRVPLH 180

Query: 177 TLRAHIDYGTAVAETAYGSCGIKVYV 202
           TLRA+IDYG   A+T +G  G+KV++
Sbjct: 181 TLRANIDYGFFEAKTTFGRIGVKVWI 206


>gi|153824145|ref|ZP_01976812.1| ribosomal protein S3 [Vibrio cholerae B33]
 gi|126518331|gb|EAZ75554.1| ribosomal protein S3 [Vibrio cholerae B33]
          Length = 199

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 104/199 (52%), Positives = 142/199 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   WN+ WFA   ++   L  D K+R+YL   L  A +++I+IER 
Sbjct: 1   MGQKVHPNGIRLGIVKPWNATWFANTKDFADNLDGDFKVRQYLSKELANASLSRIVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ +      +++ EV KPE++  L+A SI
Sbjct: 61  AKSIRVTIHTARPGVVIGKKGEDVEKLRAAVAKIAGVPAQINIAEVRKPELDGQLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIK 199
            IDY T+ A T YG  G+K
Sbjct: 181 DIDYATSSAHTTYGVIGVK 199


>gi|225175668|ref|ZP_03729662.1| ribosomal protein S3 [Dethiobacter alkaliphilus AHT 1]
 gi|225168997|gb|EEG77797.1| ribosomal protein S3 [Dethiobacter alkaliphilus AHT 1]
          Length = 226

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 103/203 (50%), Positives = 151/203 (74%), Gaps = 2/203 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P+ FR+GV   W ++W+A    Y  LLHED+KIR+ +  HL  AGV+K+ IER 
Sbjct: 1   MGQKVSPVGFRIGVIRDWEAKWYA-DKNYTDLLHEDMKIRKAIVKHLNNAGVSKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNS-EIHLSVNEVPKPEINATLIAQS 119
               RI +++A+PG++IGK G+ +E++RKKL  +T+  ++H+++ E+ +PE++ATL+A+S
Sbjct: 60  ANRIRISIHTAKPGIVIGKGGSGVEELRKKLEKLTDKKQVHINIVEIKRPELDATLVAES 119

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IA QL +R+ FRRAMK+++   MR GA G+KV+ SGRL GAE++RTE   EG VPLQTLR
Sbjct: 120 IANQLTKRIAFRRAMKQSIFRTMRAGAKGIKVMISGRLGGAEIARTESNHEGTVPLQTLR 179

Query: 180 AHIDYGTAVAETAYGSCGIKVYV 202
           A IDYG   A+T YG  G+KV++
Sbjct: 180 ADIDYGFVEADTTYGKIGVKVWI 202


>gi|33519664|ref|NP_878496.1| 30S ribosomal protein S3 [Candidatus Blochmannia floridanus]
 gi|61215719|sp|Q7VQE2|RS3_BLOFL RecName: Full=30S ribosomal protein S3
 gi|33517327|emb|CAD83712.1| 30S ribosomal subunit protein S3 [Candidatus Blochmannia
           floridanus]
          Length = 235

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 108/210 (51%), Positives = 154/210 (73%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+  +W+S W+A    +   L+ D ++R++L   L +A V++I+IER 
Sbjct: 1   MGQKVHPNGMRLGIIKSWHSTWYANNKNFSNNLNNDFEVRKFLLGQLSKALVSRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +Y+ARPG+IIG+KG DIEK+R+K+S ++     L+++E+ KPE+ A L+A +I
Sbjct: 61  AKSIRVTIYTARPGVIIGRKGEDIEKLREKVSKISGVPTKLNISEIRKPELEAKLLADNI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRA+KR VQSAMR GA G+KV  SGRL+GAE++RTE Y EGRVPL T RA
Sbjct: 121 ASQLERRVIFRRAIKRVVQSAMRLGAKGIKVEVSGRLSGAEIARTEWYREGRVPLHTFRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            IDY  + A T+YG  G+KV+V  + E+ D
Sbjct: 181 DIDYSLSEAHTSYGVVGVKVWV-FKGEILD 209


>gi|292669853|ref|ZP_06603279.1| 30S ribosomal protein S3 [Selenomonas noxia ATCC 43541]
 gi|292648650|gb|EFF66622.1| 30S ribosomal protein S3 [Selenomonas noxia ATCC 43541]
          Length = 223

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 99/202 (49%), Positives = 149/202 (73%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG+   W++RW+A   ++   LHED+KIR+YL+  L+ AGV ++  ER+
Sbjct: 1   MGQKVNPHGIRLGIVKDWDARWYA-DKDFAQNLHEDIKIRDYLKKSLQTAGVPRVETERS 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ +++A+PG++IG+ G+ IE+I++ L N+T+  + +++ E+ +P+++ATL+A++I
Sbjct: 60  KNRLKLTIHTAKPGMVIGRGGSGIEQIKEGLKNLTDKRVDINIAEIKQPDLDATLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK+AV   MR GA G+K+  SGRL GAE++R E Y EG +PL TLRA
Sbjct: 120 AAQLERRIAFRRAMKQAVGRTMRLGAKGIKIAVSGRLGGAEIARRESYREGSIPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYGTA A T YG  GIKV++
Sbjct: 180 DIDYGTAEAHTTYGRIGIKVWI 201


>gi|319760335|ref|YP_004124273.1| 30S ribosomal protein S3 [Candidatus Blochmannia vafer str. BVAF]
 gi|318039049|gb|ADV33599.1| 30S ribosomal protein S3 [Candidatus Blochmannia vafer str. BVAF]
          Length = 235

 Score =  223 bits (569), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 103/211 (48%), Positives = 156/211 (73%), Gaps = 1/211 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W S W+A   ++   L+ D ++R +L   L +A +++I+IER 
Sbjct: 1   MGQKVHPNGMRLGIIKFWYSTWYANNKDFSKNLNNDFEVRRFLTKELSKALISRIIIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +Y+ARPG++IGKKG D+EK+R+K++ ++     L+++EV KPE++A L+A +I
Sbjct: 61  AKSMRVTIYTARPGIVIGKKGGDVEKLREKVAKISGVPTQLNISEVRKPELDAKLLADNI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRA+KRA QSA+R GA+G+K+  SGRL+GAE++RTE + EGRVPL TLRA
Sbjct: 121 ASQLERRVIFRRAIKRAAQSAIRLGAEGIKIEISGRLSGAEIARTEWHREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDS 211
           +IDY  + A T YG  G+KV++  + E+ D+
Sbjct: 181 NIDYSLSEAYTTYGVLGVKVWI-FKGEILDT 210


>gi|56416997|ref|YP_154071.1| 30S ribosomal protein S3 [Anaplasma marginale str. St. Maries]
 gi|222475365|ref|YP_002563782.1| 30S ribosomal protein S3 (rpsC) [Anaplasma marginale str. Florida]
 gi|254995173|ref|ZP_05277363.1| 30S ribosomal protein S3 [Anaplasma marginale str. Mississippi]
 gi|255003347|ref|ZP_05278311.1| 30S ribosomal protein S3 [Anaplasma marginale str. Puerto Rico]
 gi|255004471|ref|ZP_05279272.1| 30S ribosomal protein S3 [Anaplasma marginale str. Virginia]
 gi|81677622|sp|Q5PA64|RS3_ANAMM RecName: Full=30S ribosomal protein S3
 gi|254764509|sp|B9KJ64|RS3_ANAMF RecName: Full=30S ribosomal protein S3
 gi|56388229|gb|AAV86816.1| 30S ribosomal protein S3 [Anaplasma marginale str. St. Maries]
 gi|222419503|gb|ACM49526.1| 30S ribosomal protein S3 (rpsC) [Anaplasma marginale str. Florida]
          Length = 211

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/206 (52%), Positives = 149/206 (72%), Gaps = 1/206 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK NPI  RLG+  TW+S W+A G  Y + LHEDL +R +++     A V++++I R 
Sbjct: 1   MGQKSNPIGLRLGIVGTWDSLWYA-GGGYASKLHEDLLLRSFVKKTFHHAAVSRVVIARK 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I ++SARPG+IIGKKGTDI+++++K++ M N ++ L + EV KP++ A LIA++I
Sbjct: 60  VDAVIINIHSARPGVIIGKKGTDIDRVKQKIAQMVNHDVELHIVEVKKPDLKAALIAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV FRRAMKR VQ+ ++ GA GVKV  SGRL GAE++RTE Y EG VPL T RA
Sbjct: 120 AQQLEKRVSFRRAMKRGVQNCLKLGARGVKVSCSGRLGGAEIARTEWYKEGSVPLHTFRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRD 206
           +IDY  A A+T YG  G+KV+V + D
Sbjct: 180 NIDYSCAEAKTIYGIVGVKVWVYVGD 205


>gi|329898716|ref|ZP_08272450.1| SSU ribosomal protein S3p (S3e) [gamma proteobacterium IMCC3088]
 gi|328920771|gb|EGG28227.1| SSU ribosomal protein S3p (S3e) [gamma proteobacterium IMCC3088]
          Length = 224

 Score =  223 bits (568), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+    NS W+A    Y   L  DL++R+Y++  L  A V++ILIER 
Sbjct: 1   MGQKVHPTGIRLGIVKDHNSVWYADSKNYARQLITDLEVRQYIEKVLDNASVSRILIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI + +ARPG++IGKKG D++K+RK LS      +++++ E+ KP+++A L+AQ++
Sbjct: 61  AQTARITISTARPGIVIGKKGEDVDKLRKDLSARMGVPVNINIEEIRKPDLDAKLVAQNV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+A+R GA+GVK+  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNALRQGAEGVKIQVSGRLGGAEIARAEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A T YG  G+KV++
Sbjct: 181 DIDYATYEASTTYGIIGVKVWI 202


>gi|253577185|ref|ZP_04854505.1| 30S ribosomal protein S3 [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251843429|gb|EES71457.1| 30S ribosomal protein S3 [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 222

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/209 (49%), Positives = 154/209 (73%), Gaps = 3/209 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+G+   W S+W+A G ++G LL ED+KIRE+L+  LK + V++I IER 
Sbjct: 1   MGQKVNPVGLRVGIIRDWESKWYA-GKDFGDLLLEDVKIREHLKNKLKDSAVSRIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSE-IHLSVNEVPKPEINATLIAQS 119
                + +++A+PG++IGK G+++E +R +++ +   + +H++++E+  P+++A L+A+S
Sbjct: 60  ANRVNVTIHTAKPGMVIGKGGSEVENLRGEITKIAGGKKVHINISEIKHPDLDAILVAES 119

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IAQQLERRV FRRA+K+A+Q  MR GA G+K   SGRL GAE++RTE Y EG VPL TLR
Sbjct: 120 IAQQLERRVSFRRALKQAIQRTMRSGAKGIKTAVSGRLGGAEIARTEGYSEGTVPLHTLR 179

Query: 180 AHIDYGTAVAETAYGSCGIKVYVSLRDEV 208
           A IDYGTA A T YG  G+KV++  R EV
Sbjct: 180 ADIDYGTAEAHTTYGRIGVKVWI-YRGEV 207


>gi|320529802|ref|ZP_08030879.1| ribosomal protein S3 [Selenomonas artemidis F0399]
 gi|320137820|gb|EFW29725.1| ribosomal protein S3 [Selenomonas artemidis F0399]
          Length = 223

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/221 (46%), Positives = 155/221 (70%), Gaps = 1/221 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG+   W++RW+A   ++   LHED+KIR+YL+  L+ AGV ++  ER+
Sbjct: 1   MGQKVNPHGIRLGIVKDWDARWYA-DKDFAQNLHEDIKIRDYLKKSLQTAGVPRVETERS 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ +++A+PG++IG+ G+ IE+I++ L  +T+  + +++ E+ +P+++ATL+A++I
Sbjct: 60  KNRLKLTIHTAKPGMVIGRGGSGIEQIKEGLKGLTDKRVDINIAEIKQPDLDATLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK+AV   MR GA G+K+  SGRL GAE++R E Y EG +PL TLRA
Sbjct: 120 AAQLERRIAFRRAMKQAVGRTMRLGAKGIKIAVSGRLGGAEIARRESYREGSIPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            IDYGTA A T YG  GIKV++   + + D      AA+ R
Sbjct: 180 DIDYGTAEAHTTYGRIGIKVWIFKGEVLPDKKQQPKAAKER 220


>gi|93005320|ref|YP_579757.1| 30S ribosomal protein S3 [Psychrobacter cryohalolentis K5]
 gi|123264740|sp|Q1QDI0|RS3_PSYCK RecName: Full=30S ribosomal protein S3
 gi|92392998|gb|ABE74273.1| SSU ribosomal protein S3P [Psychrobacter cryohalolentis K5]
          Length = 242

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/215 (49%), Positives = 154/215 (71%), Gaps = 1/215 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLGV    N+ W+A   +Y   L  D+++REYL+  L  A ++KI+IER 
Sbjct: 1   MGQKVHPIGIRLGVVKKHNANWYASPKQYSEYLINDIQVREYLRKKLDSAMISKIMIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I + +ARPG++IGKKG DIE+++K+L+ +      +++ E+  P+++A L+A+ I
Sbjct: 61  TGAAKITIATARPGIVIGKKGEDIERLQKELTKIMGVPAQVNIEEITSPDLDAHLVAEGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ++MR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNSMRSGAKGIKVELSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            IDY +  AET YG+ G+KV++  R E+ D  +++
Sbjct: 181 DIDYSSVRAETTYGTIGVKVWI-FRGEILDGMNSV 214


>gi|163938124|ref|YP_001643008.1| 30S ribosomal protein S3 [Bacillus weihenstephanensis KBAB4]
 gi|229009625|ref|ZP_04166851.1| 30S ribosomal protein S3 [Bacillus mycoides DSM 2048]
 gi|229053962|ref|ZP_04195396.1| 30S ribosomal protein S3 [Bacillus cereus AH603]
 gi|229131124|ref|ZP_04260036.1| 30S ribosomal protein S3 [Bacillus cereus BDRD-ST196]
 gi|229165104|ref|ZP_04292899.1| 30S ribosomal protein S3 [Bacillus cereus AH621]
 gi|163860321|gb|ABY41380.1| ribosomal protein S3 [Bacillus weihenstephanensis KBAB4]
 gi|228618367|gb|EEK75397.1| 30S ribosomal protein S3 [Bacillus cereus AH621]
 gi|228652337|gb|EEL08262.1| 30S ribosomal protein S3 [Bacillus cereus BDRD-ST196]
 gi|228721380|gb|EEL72901.1| 30S ribosomal protein S3 [Bacillus cereus AH603]
 gi|228751647|gb|EEM01447.1| 30S ribosomal protein S3 [Bacillus mycoides DSM 2048]
          Length = 219

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/208 (50%), Positives = 145/208 (69%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  R+G+   W SRWFA   +Y  LLHED+KIREY+   LK + VAK+ IER 
Sbjct: 1   MGQKVNPIGLRVGIIRDWESRWFAE-KDYATLLHEDIKIREYITVRLKDSAVAKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +++A+PG++IGK GT++E +RK L+ +T   +H+++ EV + ++NA L+ ++I
Sbjct: 60  ANRVNVTIHTAKPGMVIGKGGTEVEALRKALNQLTGKRVHINILEVKRADLNAKLVGENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRA K+ +Q AMR GA G+K   SGRL GA+++R E Y EG VPL TLRA
Sbjct: 120 ARQLENRVSFRRAQKQVIQRAMRAGAKGIKTQVSGRLGGADIARAESYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY    A+T YG  G+KV++  R EV
Sbjct: 180 DIDYAAVEADTTYGKLGVKVWI-YRGEV 206


>gi|118602219|ref|YP_903434.1| SSU ribosomal protein S3P [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|152060901|sp|A1AVK6|RS3_RUTMC RecName: Full=30S ribosomal protein S3
 gi|118567158|gb|ABL01963.1| SSU ribosomal protein S3P [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 232

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 100/202 (49%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG+   W+S+W+A   +Y   L  D+K+R+YL   L  A V++I IER 
Sbjct: 1   MGQKVNPKGIRLGIVKDWDSKWYANSQDYSKYLLSDIKVRDYLFDKLTNASVSRIQIERL 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
             N +I +++ARPG+IIGKKG DIE+++  +S M    +H+++ E+ KPE++A L+A++I
Sbjct: 61  ANNAKITIHTARPGIIIGKKGADIEQLKSIVSKMMGIPVHINIEEIKKPELDARLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV++RRA+KR + +  R GA G+KV+ +GRLNGAE++R+E Y EGRVPL T RA
Sbjct: 121 AQQLEKRVMYRRAVKRVLGNTTRLGAKGIKVMVNGRLNGAEIARSEWYREGRVPLHTFRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            +DY +  A T YG  GIKV++
Sbjct: 181 DVDYSSYGANTQYGVIGIKVWI 202


>gi|257784957|ref|YP_003180174.1| 30S ribosomal protein S3 [Atopobium parvulum DSM 20469]
 gi|257473464|gb|ACV51583.1| ribosomal protein S3 [Atopobium parvulum DSM 20469]
          Length = 236

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 108/222 (48%), Positives = 155/222 (69%), Gaps = 4/222 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+ P  FRLGV  +W SRW+A   +Y   L  DL IR+YL+  L++A VA+I IER 
Sbjct: 1   MGQKVQPTGFRLGVTESWRSRWYA-DKDYAEQLGNDLAIRKYLEKRLEKAAVARIDIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIR---KKLSNMTNSEIHLSVNEVPKPEINATLIA 117
               ++ ++SARPG++IGKKG +I+ +R   ++++ +   ++++ V EV +PE++A L+A
Sbjct: 60  GDKVKVTIFSARPGIVIGKKGAEIDGLRADLERVAKVGKGQVNVDVVEVKRPELDANLVA 119

Query: 118 QSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQT 177
           QSIA+QLE+RV FRRAM++AVQSA + GA G+++  SGRLNGAE+ R E Y EGRVPL T
Sbjct: 120 QSIAEQLEQRVAFRRAMRKAVQSARKAGAKGIRIQCSGRLNGAEMGRREWYREGRVPLHT 179

Query: 178 LRAHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
           LRA I YGTA   T  G+ GIKV++   +++    +  PA E
Sbjct: 180 LRAAIGYGTATGRTTMGAVGIKVWIYFGEKMPGQPTPNPALE 221


>gi|110833264|ref|YP_692123.1| 30S ribosomal protein S3 [Alcanivorax borkumensis SK2]
 gi|254427789|ref|ZP_05041496.1| ribosomal protein S3 [Alcanivorax sp. DG881]
 gi|123345807|sp|Q0VSJ7|RS3_ALCBS RecName: Full=30S ribosomal protein S3
 gi|110646375|emb|CAL15851.1| 30S ribosomal protein S3 [Alcanivorax borkumensis SK2]
 gi|196193958|gb|EDX88917.1| ribosomal protein S3 [Alcanivorax sp. DG881]
          Length = 230

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/208 (51%), Positives = 151/208 (72%), Gaps = 1/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P+  RLG+    NS W+A    Y   L  DL++REYL   LK A V++I IER 
Sbjct: 1   MGQKVHPVGIRLGIVKEHNSLWYAGPKSYSDCLVTDLQVREYLFKRLKSASVSRIKIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +N RI + +ARPG++IGKKG D+E++R+ ++      +H+++ EV KP+++A L+  ++
Sbjct: 61  SENVRITIATARPGIVIGKKGEDVERLRRDVAAKMGVPVHINIEEVRKPDLDARLVGDNV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AM+ GA+G+++  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AGQLERRVMFRRAMKRAVQNAMKSGAEGIRIQLSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY +  AET YG+ G+KV++  R EV
Sbjct: 181 DIDYASVRAETTYGTIGVKVWI-FRGEV 207


>gi|57505350|ref|ZP_00371279.1| ribosomal protein S3 [Campylobacter upsaliensis RM3195]
 gi|57016486|gb|EAL53271.1| ribosomal protein S3 [Campylobacter upsaliensis RM3195]
          Length = 233

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 146/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF   +     + ED KIR +L+  L  AG+++IL+ERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLKRKLYYAGISQILVERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPG+IIGKKG+D++ ++K+L ++   ++++++ E  K   +A L A+S+
Sbjct: 61  AKKLRVTVVAARPGIIIGKKGSDVDILKKELQDLIKKDVNINIKEERKVGSSAQLAAESV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+R+ FRRAMK+ +Q A + GA G+KV  SGRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 ATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG+ G+KV++
Sbjct: 181 KIDYGFAEARTTYGNIGVKVWI 202


>gi|297618378|ref|YP_003703537.1| ribosomal protein S3 [Syntrophothermus lipocalidus DSM 12680]
 gi|297146215|gb|ADI02972.1| ribosomal protein S3 [Syntrophothermus lipocalidus DSM 12680]
          Length = 222

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 105/220 (47%), Positives = 160/220 (72%), Gaps = 8/220 (3%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   R+G+   W+S+W+A   +Y  LLHED  IR+Y++ +   AG++K+ IERT
Sbjct: 1   MGQKVHPKGLRIGIIRDWDSKWYA-DRDYTDLLHEDYHIRKYIKENFFAAGISKVEIERT 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+ +++A+PG+IIG+ GT++E++R+ L  +T   +++++ E+ KPE++A ++A+++
Sbjct: 60  GNRVRVSIHTAKPGIIIGRGGTEVERLRQDLGKLTGKTVNINIVEIKKPELDAQIVAENV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A Q+ERRV +RRAMK+AVQ  MR GA+G+K+  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 120 AAQIERRVAYRRAMKQAVQRTMRAGAEGIKIAVSGRLAGAEIARTEWYAEGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEH 220
            IDYG A A T YG  GIK++++ R EV      +PAA+ 
Sbjct: 180 DIDYGFAEAMTTYGKIGIKIWIN-RGEV------LPAAKQ 212


>gi|227494551|ref|ZP_03924867.1| ribosomal protein S3 [Actinomyces coleocanis DSM 15436]
 gi|226832285|gb|EEH64668.1| ribosomal protein S3 [Actinomyces coleocanis DSM 15436]
          Length = 271

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 108/216 (50%), Positives = 153/216 (70%), Gaps = 5/216 (2%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFA----RGSEYGALLHEDLKIREYLQCHLKQAGVAKIL 56
           MGQK+NP  FRLG+     SRWFA    +G  Y   + ED+ IR+ L   L++AGVA+I 
Sbjct: 1   MGQKVNPTGFRLGITTEHRSRWFADSTTKGQRYSDYVAEDVAIRKLLNETLERAGVARIQ 60

Query: 57  IERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLI 116
           IERT    R+ +Y+ARPG++IG++G + +++R +L  +T  ++ L + EV  PE++A L+
Sbjct: 61  IERTTDRVRVDLYAARPGIVIGRRGAEADRLRVQLEKLTGKQVQLKIIEVKNPELDAKLV 120

Query: 117 AQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQ 176
           AQ IA+QL  RV FRRAM++A+QSAMR GA G++V  SGRL GAE+SR E Y EGRVPL 
Sbjct: 121 AQGIAEQLGARVSFRRAMRKAMQSAMRAGAKGIRVQCSGRLGGAEMSRAEFYREGRVPLH 180

Query: 177 TLRAHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
           TLRA+IDYGT  A+T +G  G+KV++  + +V+D +
Sbjct: 181 TLRANIDYGTFEAKTTFGRIGVKVWI-YKGDVTDRE 215


>gi|328955908|ref|YP_004373241.1| SSU ribosomal protein S3P [Coriobacterium glomerans PW2]
 gi|328456232|gb|AEB07426.1| SSU ribosomal protein S3P [Coriobacterium glomerans PW2]
          Length = 239

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 110/222 (49%), Positives = 151/222 (68%), Gaps = 4/222 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+ P  FRLG+   W SRWFA   +Y A +  DL+IR YL   L +A V+++ IER 
Sbjct: 1   MGQKVYPTGFRLGITENWRSRWFAE-KDYAASIGNDLEIRRYLTKRLTRAAVSRVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKL---SNMTNSEIHLSVNEVPKPEINATLIA 117
               +II+ S RPG++IGKKG +I+ +R +L   + ++   + + V E+ +PEI+A L+A
Sbjct: 60  GDKVKIIILSGRPGIVIGKKGAEIDALRTELERVAGVSKGNLSIDVIEIRRPEIDAKLVA 119

Query: 118 QSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQT 177
           QSIA+QLE RV FRRAM++AVQSA + GA G+++  SGRL G+E+ R E Y EGRVPL T
Sbjct: 120 QSIAEQLEGRVAFRRAMRKAVQSASKAGAKGIRIQCSGRLGGSEMGRREWYREGRVPLHT 179

Query: 178 LRAHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
           LRA IDYGTA A T  GSCG+KV++ L + +    +  PA E
Sbjct: 180 LRAKIDYGTATAHTTMGSCGVKVWIFLGERMPGQPTPNPALE 221


>gi|311748508|ref|ZP_07722293.1| ribosomal protein S3 [Algoriphagus sp. PR1]
 gi|126577024|gb|EAZ81272.1| ribosomal protein S3 [Algoriphagus sp. PR1]
          Length = 243

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 98/202 (48%), Positives = 152/202 (75%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI FRLGV   W+S W+  G ++   L+ED KIR+Y+   + + G+AK++IERT
Sbjct: 1   MGQKINPIGFRLGVVKGWDSNWYG-GKDFAEKLYEDQKIRKYVLARIPKGGIAKVIIERT 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K   + +++ARPG++IGK G +++K++++L  +T+ +I +++ E+ +PE++A L+ +SI
Sbjct: 60  LKRITLTIHTARPGVVIGKGGAEVDKLKEELKKLTSKDIQINIFEIKRPELDAKLVGESI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQL+ R+ FRRAMK+A+ ++MR GA+G+K+  SGRL GAE++R+E Y EGR+PL T+RA
Sbjct: 120 AQQLQARISFRRAMKQAIAASMRVGAEGIKIKLSGRLGGAEMARSEMYKEGRIPLHTMRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY  + A T YG  GIKV++
Sbjct: 180 DIDYALSEARTVYGIIGIKVWI 201


>gi|148244335|ref|YP_001219029.1| 30S ribosomal protein S3 [Candidatus Vesicomyosocius okutanii HA]
 gi|189045345|sp|A5CXL0|RS3_VESOH RecName: Full=30S ribosomal protein S3
 gi|146326162|dbj|BAF61305.1| 30S ribosomal protein S3 [Candidatus Vesicomyosocius okutanii HA]
          Length = 230

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/221 (46%), Positives = 152/221 (68%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG+   W+S+W+A   +Y   L  D+K+R YL   L  A V+++ I R 
Sbjct: 1   MGQKVNPKGIRLGIIKDWDSKWYASSKDYSKYLLSDIKVRNYLFKKLINASVSRVQIGRL 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
             N ++ +Y+ARPG++IGKKG DIE+++  +S M    +H+++ E+ KPE++A L+A++I
Sbjct: 61  VNNAKVTIYTARPGIVIGKKGADIEQLKLIVSKMMGIPVHINIEEIKKPELDARLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV++RRA+KR + +A R GA G+KV+ SGRLNGAE++R+E Y EGRVPL T RA
Sbjct: 121 AQQLEKRVMYRRAVKRVLGNATRLGAQGIKVMVSGRLNGAEIARSEWYREGRVPLHTFRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHR 221
            +DY +  A+T YG  GIKV++   + +     T+    HR
Sbjct: 181 DVDYSSYGAKTQYGVIGIKVWIFKGEILDHKKGTLDEVAHR 221


>gi|182412045|ref|YP_001817111.1| ribosomal protein S3 [Opitutus terrae PB90-1]
 gi|226697739|sp|B1ZNE2|RS3_OPITP RecName: Full=30S ribosomal protein S3
 gi|177839259|gb|ACB73511.1| ribosomal protein S3 [Opitutus terrae PB90-1]
          Length = 210

 Score =  223 bits (567), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 107/212 (50%), Positives = 148/212 (69%), Gaps = 2/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK NP  FRL V   W SRW+A   ++  LL ED  IRE L   LKQA V +I IER 
Sbjct: 1   MGQKTNPTGFRLAVRRNWQSRWYATKKDFPKLLEEDQIIREKLMEKLKQASVPRIFIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+ +Y+ARPG++IG+KG +IEKI+++L+ +T  EI L + EV KPEI A L+A+++
Sbjct: 61  SNRVRVKIYTARPGIVIGRKGQEIEKIKEELAKLTGKEILLDIQEVKKPEIEAQLVAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK+AV+ AM  GA+G+++  SGRL GA+++R E   +GRVPL TLR 
Sbjct: 121 ALQLERRIAFRRAMKKAVEMAMTLGAEGIRIQCSGRLGGADIARREWQRKGRVPLHTLRE 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
           +IDYG + A T YG  G+K ++  ++  SD++
Sbjct: 181 NIDYGFSEAHTVYGKIGVKCWICKKE--SDNN 210


>gi|284040615|ref|YP_003390545.1| ribosomal protein S3 [Spirosoma linguale DSM 74]
 gi|283819908|gb|ADB41746.1| ribosomal protein S3 [Spirosoma linguale DSM 74]
          Length = 302

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/218 (47%), Positives = 154/218 (70%), Gaps = 2/218 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP+  RLG+   W S W+  G E+   L ED KIR+Y+   + +  +A+++IERT
Sbjct: 1   MGQKINPVGLRLGIVRGWESSWYG-GKEFSEKLVEDEKIRKYVAARIPKGAIARVVIERT 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K   + +++ARPG++IGK G +++KI+++L  +T  ++ +++ E+ +PEI+A L+ ++I
Sbjct: 60  LKRVTLTIHTARPGIVIGKGGGEVDKIKEELKKITGKDVQINIFEIKRPEIDAKLVGEAI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQL+ R+ FRRAMK+A+QSA+R GA G+KV  SGRL GAE++R+E Y EGRVPL TLRA
Sbjct: 120 AQQLQARISFRRAMKQAIQSAIRVGAQGIKVKVSGRLGGAEIARSEQYKEGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAA 218
            IDY  + A+T YG  GIKV++  + EV       PAA
Sbjct: 180 DIDYAISEAQTVYGKIGIKVWI-FKGEVYGKRDLSPAA 216


>gi|94500987|ref|ZP_01307512.1| ribosomal protein S3 [Oceanobacter sp. RED65]
 gi|94426927|gb|EAT11910.1| ribosomal protein S3 [Oceanobacter sp. RED65]
          Length = 230

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 147/202 (72%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+    NS W+A    Y   L  D+++R  ++  L++A V+K+ IER 
Sbjct: 1   MGQKVHPTGIRLGITKDHNSVWYAGKDTYADQLLTDIQVRSMIEKRLEKASVSKVTIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  +I +++ARPG++IGKKG D++ +RK +++M    +HL++ E+ KP+++A L+AQS+
Sbjct: 61  AQTAKITIHTARPGIVIGKKGEDVDALRKDVADMMGIPVHLNIEEIRKPDLDAKLVAQSV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ+AMR GA+G+K+   GRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 ANQLERRVMFRRAMKRAVQNAMRGGAEGIKIQVGGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A T YG  G+KV++
Sbjct: 181 DIDYATYEAHTTYGVIGVKVWI 202


>gi|320352923|ref|YP_004194262.1| 30S ribosomal protein S3P [Desulfobulbus propionicus DSM 2032]
 gi|320121425|gb|ADW16971.1| SSU ribosomal protein S3P [Desulfobulbus propionicus DSM 2032]
          Length = 221

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 103/212 (48%), Positives = 153/212 (72%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+ +  +W S W+A   +Y   LH+D  IR+YL+  L  AGV++I+IERT
Sbjct: 1   MGQKVNPVGLRINITRSWESIWYA-DKDYANNLHQDQLIRKYLKQRLFHAGVSRIVIERT 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  ++ +++ARPG++IGKKGT+IE ++K L         + + EV +PE +A L+A++I
Sbjct: 60  GEKVKVKLFTARPGIVIGKKGTEIEGLKKDLETKFKRNCFIDIQEVRRPEADAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+R+ FRRAMK+++ SA+RFG  G+K+  SGRL GAE+SRTE + EGRVPL TLRA
Sbjct: 120 ASQLEKRIAFRRAMKKSINSALRFGVQGIKISCSGRLGGAEMSRTEWFKEGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDYGTA A+T YG  G+KV++   + ++D++
Sbjct: 180 DIDYGTAEAKTTYGIIGVKVWIFKGEILADTE 211


>gi|295394342|ref|ZP_06804567.1| 30S ribosomal protein S3 [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972800|gb|EFG48650.1| 30S ribosomal protein S3 [Brevibacterium mcbrellneri ATCC 49030]
          Length = 264

 Score =  222 bits (566), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 103/206 (50%), Positives = 148/206 (71%), Gaps = 4/206 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFA----RGSEYGALLHEDLKIREYLQCHLKQAGVAKIL 56
           MGQKINP  FRLG+     S+WF     RG  Y   + ED++IRE LQ +L++AG++++ 
Sbjct: 1   MGQKINPNGFRLGITTDHKSKWFTDSNKRGQRYADFVGEDVRIREMLQNNLERAGLSRVN 60

Query: 57  IERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLI 116
           IERT    R+ +++ARPG++IG++G + +++R +L  +T  +I L++ EV  PEI+A L+
Sbjct: 61  IERTRDRVRVDIHTARPGIVIGRRGAEADRLRGQLEKLTGKQIQLNILEVKNPEIDAQLV 120

Query: 117 AQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQ 176
           AQ +A+QL  RV FRRAM++A+QSA R GA G++V  SGRL GAE+SR+E Y EGRVPL 
Sbjct: 121 AQGVAEQLASRVAFRRAMRKAIQSAQRAGAKGIRVQCSGRLGGAEMSRSEFYREGRVPLH 180

Query: 177 TLRAHIDYGTAVAETAYGSCGIKVYV 202
           TLRA+IDYG   A T +G  G+KV++
Sbjct: 181 TLRANIDYGFYEAHTTFGRIGVKVWI 206


>gi|261885695|ref|ZP_06009734.1| 30S ribosomal protein S3 [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 232

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 144/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+N I  RLG+N  W SRWF   +     + ED KIR++L+  L  AGV++IL+ERT
Sbjct: 1   MGQKVNTIGLRLGINRNWESRWFPSKATLPENIGEDYKIRKFLKTKLYYAGVSQILVERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ V +ARPG+IIGKKG +IE +R +++ + N +I +++ E  K   +A L A+++
Sbjct: 61  AKKLRVTVVAARPGIIIGKKGGEIENLRSEVTKLVNKDIAINIKEERKAGSSAQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMK+ +Q A + GA G+KV  +GRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 AMQLERRVAFRRAMKKVIQGAQKAGAKGIKVSVAGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG+ G+KV++
Sbjct: 181 RIDYGFAEAHTTYGNIGVKVWI 202


>gi|221194416|ref|ZP_03567473.1| ribosomal protein S3 [Atopobium rimae ATCC 49626]
 gi|221185320|gb|EEE17710.1| ribosomal protein S3 [Atopobium rimae ATCC 49626]
          Length = 235

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 108/222 (48%), Positives = 155/222 (69%), Gaps = 4/222 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+ P  FRLGV   W SRW+A    Y   L  DL IR YL+  L++A +A+I IER 
Sbjct: 1   MGQKVQPTGFRLGVTENWRSRWYA-DKNYAENLGNDLAIRSYLEKRLEKAAIARIDIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIR---KKLSNMTNSEIHLSVNEVPKPEINATLIA 117
               ++ ++SARPG++IGKKG +I+ +R   ++++ +   ++++ V EV +PE++A L+A
Sbjct: 60  GDKVKVTIFSARPGIVIGKKGAEIDGLRADLERVAKVGKGQVNVDVIEVKRPELDANLVA 119

Query: 118 QSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQT 177
           +SIA+QLE+RV FRRAM++AVQSA + GA G+++  SGRLNGAE+ R E Y EGRVPL T
Sbjct: 120 ESIAEQLEQRVAFRRAMRKAVQSARKAGAKGIRIQCSGRLNGAEMGRREWYREGRVPLHT 179

Query: 178 LRAHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
           LRA + YGTA A T  G+CGIKV++ L +++    +  PA E
Sbjct: 180 LRAVVAYGTATARTTMGACGIKVWIYLGEKMPGQPAPNPALE 221


>gi|238928149|ref|ZP_04659909.1| 30S ribosomal protein s3 [Selenomonas flueggei ATCC 43531]
 gi|238884109|gb|EEQ47747.1| 30S ribosomal protein s3 [Selenomonas flueggei ATCC 43531]
          Length = 223

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 99/202 (49%), Positives = 148/202 (73%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG+   W++RW+A    +   LHED+KIR+YL+  L+ AGV ++  ER+
Sbjct: 1   MGQKVNPHGIRLGIVKDWDARWYA-DKNFAQNLHEDIKIRDYLKKSLQTAGVPRVETERS 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ +++A+PG++IG+ G+ IE+I++ L N+T+  + +++ E+ +P+++ATL+A++I
Sbjct: 60  KNRLKLTIHTAKPGMVIGRGGSGIEQIKEGLKNLTDKRVDINIAEIKQPDLDATLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK+AV   MR GA G+K+  SGRL GAE++R E Y EG +PL TLRA
Sbjct: 120 AAQLERRIAFRRAMKQAVGRTMRLGAKGIKIAVSGRLGGAEIARRESYREGSIPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYGTA A T YG  GIKV++
Sbjct: 180 DIDYGTAEAHTTYGRIGIKVWI 201


>gi|88704370|ref|ZP_01102084.1| 30S ribosomal protein S3 [Congregibacter litoralis KT71]
 gi|88701421|gb|EAQ98526.1| 30S ribosomal protein S3 [Congregibacter litoralis KT71]
          Length = 222

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 106/212 (50%), Positives = 151/212 (71%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+     S W+A    Y   L  DL++R  ++  L  A V++++IER 
Sbjct: 1   MGQKVHPTGIRLGIVKDHTSVWYADRKNYAKQLVTDLQVRSLIEKKLDNASVSRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI +++ARPG++IGKKG D++K+RK+L+      +H+++ E+ KP+++A L+AQ++
Sbjct: 61  AQTARITIHTARPGIVIGKKGEDVDKLRKQLTKEMGVPVHINIEEIRKPDLDARLVAQNV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKR VQ+AMR GA+G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRVVQNAMRQGAEGIKVQVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            IDY T  A T YG  G+KV++  + EV  +D
Sbjct: 181 DIDYATYEAATTYGILGVKVWI-FKGEVLGAD 211


>gi|158520731|ref|YP_001528601.1| ribosomal protein S3 [Desulfococcus oleovorans Hxd3]
 gi|226697698|sp|A8ZV63|RS3_DESOH RecName: Full=30S ribosomal protein S3
 gi|158509557|gb|ABW66524.1| ribosomal protein S3 [Desulfococcus oleovorans Hxd3]
          Length = 216

 Score =  222 bits (565), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 107/213 (50%), Positives = 148/213 (69%), Gaps = 7/213 (3%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG+  TW SRW+A   EY   + ED K+RE+++  L  AG+AK+ IER+
Sbjct: 1   MGQKVNPEGLRLGIVKTWQSRWYA-DKEYADFILEDFKLREFVKKKLHHAGIAKVEIERS 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSN--MTNSEIHLSVNEVPKPEINATLIAQ 118
               R+ +++ARPG++IGKKG +IE+++ ++    +   ++ + + EV KPE  A L+A+
Sbjct: 60  LNRIRLRIFAARPGIVIGKKGNEIEQLKNEIRQKVVAGKDLAIDIQEVKKPETVAQLVAE 119

Query: 119 SIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTL 178
           ++A QLERRV FRRAMKR V SAMRFG  G+K+I SGRL GAE++R E Y EGRVPL TL
Sbjct: 120 NVAGQLERRVAFRRAMKRGVSSAMRFGVKGIKIICSGRLGGAEMARREWYREGRVPLHTL 179

Query: 179 RAHIDYGTAVAETAYGSCGIKVYVS----LRDE 207
           RA +DYG   A T YG  G+KV++     L+DE
Sbjct: 180 RADVDYGFVEASTTYGRIGVKVFIFKGEVLKDE 212


>gi|157690906|ref|YP_001485368.1| 30S ribosomal protein S3 [Bacillus pumilus SAFR-032]
 gi|194017609|ref|ZP_03056220.1| ribosomal protein S3 [Bacillus pumilus ATCC 7061]
 gi|172045995|sp|A8F991|RS3_BACP2 RecName: Full=30S ribosomal protein S3
 gi|157679664|gb|ABV60808.1| ribosomal protein S3 [Bacillus pumilus SAFR-032]
 gi|194010881|gb|EDW20452.1| ribosomal protein S3 [Bacillus pumilus ATCC 7061]
          Length = 218

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 101/208 (48%), Positives = 149/208 (71%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+GV   W S+WFA G +Y   LHEDLKIRE++   L  A V+K+ IER 
Sbjct: 1   MGQKVNPVGLRIGVIRDWESKWFA-GKDYADFLHEDLKIREFISKRLSDASVSKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++A+PG++IGK G+++E +RK L+++T   +H+++ E+ + +++A L+A++I
Sbjct: 60  ANRVNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINILEIKRADLDAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE R+ FRRA K+ +Q  MR GA G+K + SGRL GA+++R+E Y EG VPL TLRA
Sbjct: 120 ARQLENRISFRRAQKQTIQRTMRAGAQGIKTMVSGRLGGADIARSEYYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY TA A+T YG  G+KV++  R EV
Sbjct: 180 DIDYATAEADTTYGKLGVKVWI-YRGEV 206


>gi|256830532|ref|YP_003159260.1| ribosomal protein S3 [Desulfomicrobium baculatum DSM 4028]
 gi|256579708|gb|ACU90844.1| ribosomal protein S3 [Desulfomicrobium baculatum DSM 4028]
          Length = 212

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 108/213 (50%), Positives = 150/213 (70%), Gaps = 1/213 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K++P  FRLG N  W SRWF+   +Y   + ED ++R+Y++  L  AG++KI IER 
Sbjct: 1   MGHKVHPYGFRLGYNKNWKSRWFS-DKKYAEYVFEDSRLRKYVKEKLFHAGISKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+I+++ARPG++IG+KG +IEK+R +L      E  + VNE+ +PE +A L+A+SI
Sbjct: 60  ADKVRLILFTARPGIVIGRKGVEIEKLRAELKGKFAREFVIEVNEIRRPETDAQLVAESI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV FRRA+K+ +  A +FGA G+KV   GRL GAE++RTE   EGRVPL TLRA
Sbjct: 120 AQQLERRVAFRRAIKKTLGMAQKFGALGIKVQCGGRLGGAEIARTEWAREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDS 213
            IDYG A+A+T YG  G+KV+V   + +S+ DS
Sbjct: 180 DIDYGVALAKTTYGIIGVKVWVFKGEILSEVDS 212


>gi|261415813|ref|YP_003249496.1| ribosomal protein S3 [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|261372269|gb|ACX75014.1| ribosomal protein S3 [Fibrobacter succinogenes subsp. succinogenes
           S85]
 gi|302326260|gb|ADL25461.1| ribosomal protein S3 [Fibrobacter succinogenes subsp. succinogenes
           S85]
          Length = 219

 Score =  221 bits (564), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 150/202 (74%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG K +P   RLGV   W S+W+A   ++  LL+ED+ +R YL    + A ++K+ IERT
Sbjct: 1   MGHKTHPNGLRLGVIRGWESKWYAE-DKFADLLYEDIVLRRYLMKRFEHASLSKVGIERT 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K   + +Y+ARPG++IGKKG ++E+++ +L  +T  EI+++V+E+ +PE +A L+A++I
Sbjct: 60  VKKVNVNLYTARPGIVIGKKGEELERLKGELQFLTGKEIYIAVHEIKRPETDAKLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE+R+ FRRAMKRA+QSAMR G +G+KV   GRL GAE++R E Y EGRVPL TLRA
Sbjct: 120 ARQLEKRISFRRAMKRAIQSAMRMGVEGIKVQCGGRLGGAEIARVEKYAEGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY TA+A+T YG+ GIKV++
Sbjct: 180 DIDYATAIAKTVYGAIGIKVWI 201


>gi|326803039|ref|YP_004320857.1| ribosomal protein S3 [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650398|gb|AEA00581.1| ribosomal protein S3 [Aerococcus urinae ACS-120-V-Col10a]
          Length = 216

 Score =  221 bits (564), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 100/202 (49%), Positives = 145/202 (71%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP   R+GV   W++RWF    +Y   LHEDL +R+Y++  LK A ++++ IER 
Sbjct: 1   MGQKINPTGLRIGVIKDWDARWFEE-KDYANTLHEDLAVRDYIEDALKDASISQVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I V++A+PG++IGK G+++EK+RK L+ +T   +H++V EV +P+++A L+ ++I
Sbjct: 60  ANKVNINVHTAKPGMVIGKGGSEVEKLRKDLNQLTGKRVHINVIEVKQPDLSAELVGENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE R+ FRRAMK+A+Q  M+ GA G+KV  SGRLNGA+++RTE   EG VPL TLRA
Sbjct: 120 AQQLENRIAFRRAMKQAIQRTMKAGAQGIKVQVSGRLNGADMARTEALDEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY    A+T YG  G+KV++
Sbjct: 180 DIDYAWVEADTTYGKIGVKVWI 201


>gi|262197182|ref|YP_003268391.1| ribosomal protein S3 [Haliangium ochraceum DSM 14365]
 gi|262080529|gb|ACY16498.1| ribosomal protein S3 [Haliangium ochraceum DSM 14365]
          Length = 223

 Score =  221 bits (564), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 149/202 (73%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK +PI FRLGV  TW+S+W+     Y   LHEDLK++ +++  L+ A V+ I +ER 
Sbjct: 1   MGQKTHPIGFRLGVIKTWSSKWYEE-KNYSKWLHEDLKLKRFIKRKLQHAAVSYIDVERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I +Y+ARPG++IGK+G  +E +++ + ++T++E+ L++ EV K E NA L+A++I
Sbjct: 60  ANKAKINIYTARPGIVIGKRGAGVETLKRDVQSLTDNEVFLNIVEVRKAETNAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK+AVQ+AM+FG  G++V ++GRL G+E+SR E Y EGRVPL TLRA
Sbjct: 120 ATQLERRIAFRRAMKKAVQTAMKFGCKGIRVASAGRLGGSEMSRREWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG   A+T YG+ G+K ++
Sbjct: 180 DIDYGFTEAKTTYGTIGVKCWI 201


>gi|154149468|ref|YP_001405703.1| 30S ribosomal protein S3 [Campylobacter hominis ATCC BAA-381]
 gi|171769698|sp|A7HZL2|RS3_CAMHC RecName: Full=30S ribosomal protein S3
 gi|153805477|gb|ABS52484.1| ribosomal protein S3 [Campylobacter hominis ATCC BAA-381]
          Length = 231

 Score =  221 bits (564), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 145/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+N  W SRWF   S     + ED KIR++L+  L  AG+ +ILIERT
Sbjct: 1   MGQKVNPIGLRLGINRNWESRWFPVKSAIPENISEDYKIRKFLKAKLYYAGINQILIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  R+ + +ARPG+IIGKKG++IE ++ ++  +   ++ +++ E  +P  +A L A+++
Sbjct: 61  AKKLRVTIVAARPGVIIGKKGSEIENLKNEVVALLKKDVTINIKEERRPGSSAQLAAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+RV FRRAMK+ +QSA + GA G+K+  +GRL GAE++RTE YLEGRVPL TLRA
Sbjct: 121 AMQLEKRVAFRRAMKKVIQSAQKAGAKGIKISVAGRLGGAEMARTEWYLEGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG+ G+KV++
Sbjct: 181 KIDYGFAEAHTTYGNIGVKVWI 202


>gi|238898921|ref|YP_002924603.1| 30S ribosomal subunit protein S3 [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|259495251|sp|C4K7B2|RS3_HAMD5 RecName: Full=30S ribosomal protein S3
 gi|229466681|gb|ACQ68455.1| 30S ribosomal subunit protein S3 [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 233

 Score =  221 bits (564), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 143/202 (70%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P + RLG+   W S W+A   E+   L  D K+R++L   L +A ++ ++IER 
Sbjct: 1   MGQKVHPKIIRLGIIKYWLSTWYANTKEFAENLQGDFKVRQFLTKELSKASISHVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +Y+ARPG++IGKKG D+EK+RK+++ +      ++  E+ KPE++  L+A  I
Sbjct: 61  PKSIRVTIYTARPGIVIGKKGEDVEKLRKRVALIAGVPAQINTYEIRKPELDPKLVADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
             QLERRV+FRRAMKRAVQ+ MR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNTMRAGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYDTSEAHTTYGVIGVKVWI 202


>gi|119502930|ref|ZP_01625015.1| 30S ribosomal protein S3 [marine gamma proteobacterium HTCC2080]
 gi|119461276|gb|EAW42366.1| 30S ribosomal protein S3 [marine gamma proteobacterium HTCC2080]
          Length = 223

 Score =  221 bits (564), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 145/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+    NS W+A    Y   L  DL++R+Y+   L  A V++++IER 
Sbjct: 1   MGQKVHPTGIRLGIVKDHNSVWYADSKAYAKNLISDLEVRDYVLKKLDAASVSRVVIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  R+ +++ARPG++IGKKG D+EK+R+ LS      +H+++ E+ KP+++A L+AQ++
Sbjct: 61  AQTARLTIHTARPGIVIGKKGEDVEKLRRDLSAKMGVPVHINIEEIRKPDLDARLVAQNV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKR VQ+AMR GA G+KV   GRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRVVQNAMRQGAQGIKVQVGGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T  A T YG  G+KV++
Sbjct: 181 DIDYATYEAHTTYGVIGVKVWI 202


>gi|257065027|ref|YP_003144699.1| SSU ribosomal protein S3P [Slackia heliotrinireducens DSM 20476]
 gi|256792680|gb|ACV23350.1| SSU ribosomal protein S3P [Slackia heliotrinireducens DSM 20476]
          Length = 244

 Score =  221 bits (563), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 108/219 (49%), Positives = 151/219 (68%), Gaps = 1/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+ P  FRLG+   W SRW+A   +Y   L  DL IR++L+  L++A V+KI IER 
Sbjct: 1   MGQKVMPTGFRLGITEDWRSRWYA-DKDYAKNLENDLAIRKFLEKQLEKAAVSKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +II+ +ARPG++IGKKG +IE +RK ++ + N  +++ V EV +PE++A L+A+S+
Sbjct: 60  GDKIKIIITTARPGVVIGKKGAEIENLRKDVAKVANGAVNIEVIEVKRPELDAVLVAKSV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRAM++AVQSA + GA G+++  SGRL GAE+SR E Y EGRVPL TLRA
Sbjct: 120 AEQLEGRVAFRRAMRKAVQSARKSGAQGIRIQCSGRLGGAEMSRREWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDYG A A T  G+ G+KV++   + +       PA E
Sbjct: 180 KIDYGFATARTTMGAIGVKVWIYHGEVLPGGKVPQPALE 218


>gi|149199510|ref|ZP_01876545.1| 30S ribosomal protein S3 [Lentisphaera araneosa HTCC2155]
 gi|149137445|gb|EDM25863.1| 30S ribosomal protein S3 [Lentisphaera araneosa HTCC2155]
          Length = 232

 Score =  221 bits (563), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 104/203 (51%), Positives = 145/203 (71%), Gaps = 1/203 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+ FR+G    W SRWFA   E+   L ED++IR+ ++   K+  V++I IER 
Sbjct: 1   MGQKVNPVGFRIGYTKDWRSRWFASKKEFAGKLAEDIEIRKLIKGRFKEFAVSRINIERF 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNS-EIHLSVNEVPKPEINATLIAQS 119
               RI +++ARPGL+IG KG  IE+++ +L+ +    E+ L V EV  PE++A L+A+S
Sbjct: 61  ANRVRIAIHTARPGLVIGSKGAQIEEVKSELAKLAKGKEVFLDVVEVRNPEVDAVLVAES 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IAQQLERRV +RRAMK+++Q AM  GADG+KV   GRL+GA+++R E Y EGRVPLQT+ 
Sbjct: 121 IAQQLERRVSYRRAMKKSIQVAMDMGADGIKVKCGGRLSGADIARNEVYSEGRVPLQTIS 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYV 202
           A+IDYG A A T YG  G+KV++
Sbjct: 181 ANIDYGFAEANTTYGIIGVKVWI 203


>gi|323340380|ref|ZP_08080637.1| 30S ribosomal protein S3 [Lactobacillus ruminis ATCC 25644]
 gi|323092156|gb|EFZ34771.1| 30S ribosomal protein S3 [Lactobacillus ruminis ATCC 25644]
          Length = 218

 Score =  221 bits (563), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 99/202 (49%), Positives = 147/202 (72%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP   R+G+   W+++W+A   ++ + LHEDL IR+Y++  L  A V+ + IER 
Sbjct: 1   MGQKINPTGLRVGIIRDWDAKWYAE-KDFASNLHEDLHIRKYIEKKLADASVSTVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K   + +++A+PG++IGK G+++EK+RK+L+N+T   +H+++ E+ KP+++A L+ +SI
Sbjct: 60  AKRVNVSIHTAKPGMVIGKGGSEVEKLRKELNNLTGKRVHINIVEIKKPDLDAKLVGESI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE RV FRRAMK+A+Q  MR GA G+KV  +GRLNGA++SR E + EG VPL TLRA
Sbjct: 120 AQQLENRVAFRRAMKQAIQRTMRAGAQGIKVQVAGRLNGADMSRVERFSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY    A T YG  G+KV++
Sbjct: 180 DIDYAWVEARTTYGQLGVKVWI 201


>gi|323490629|ref|ZP_08095834.1| 30S ribosomal protein S3 [Planococcus donghaensis MPA1U2]
 gi|323395721|gb|EGA88562.1| 30S ribosomal protein S3 [Planococcus donghaensis MPA1U2]
          Length = 218

 Score =  221 bits (563), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 103/208 (49%), Positives = 151/208 (72%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+PI  R+G+   W S+W+A   +Y  LLHED+KIREY++  LK+A V+KI IER 
Sbjct: 1   MGQKIHPIGMRIGIIRDWESKWYAE-KDYATLLHEDIKIREYVEARLKEASVSKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +++A+PG++IGK G+++E +RK+L++MT   +H+++ E+ + +++A L+A+S+
Sbjct: 60  ANRVNVTIHTAKPGMVIGKGGSEVEVLRKQLNSMTGKRVHINIIEIKRADLDARLVAESV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRA K+A+Q  MR GA G+K   SGRL GA+++R E Y EG VPL TLRA
Sbjct: 120 ARQLENRVSFRRAQKQAIQRTMRSGAKGIKTQVSGRLGGADIARAEHYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY  A A+T YG  G+KV++  R EV
Sbjct: 180 DIDYAHAEADTTYGKLGVKVWI-YRGEV 206


>gi|320103623|ref|YP_004179214.1| 30S ribosomal protein S3P [Isosphaera pallida ATCC 43644]
 gi|319750905|gb|ADV62665.1| SSU ribosomal protein S3P [Isosphaera pallida ATCC 43644]
          Length = 234

 Score =  221 bits (563), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 107/206 (51%), Positives = 143/206 (69%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+ P  FR+G+   W SRW+A   ++  LL ED KIR+Y++     AG+ K+ IERT
Sbjct: 1   MGQKVRPTGFRVGIMEDWRSRWYASKQDFSDLLVEDFKIRKYIKTKHGNAGIPKVEIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++I+++ARPG+IIGKKG ++EK++++L  +T   I + + EV +PEINA LIA+ I
Sbjct: 61  RDAVKVILFTARPGVIIGKKGAEVEKLQEELQKLTGRRIDIKIEEVNRPEINAQLIAEDI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QL+RRV FRR +KRA +S M  GA GVKV  SGRL GAE+SRTE    G +PL TLRA
Sbjct: 121 ADQLQRRVSFRRTIKRAQESTMEAGAKGVKVQLSGRLGGAEMSRTEQGAAGSIPLSTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRD 206
            IDYG A A+T  G  GIKV+V+  D
Sbjct: 181 KIDYGFAEAKTPQGHIGIKVWVNQGD 206


>gi|330752354|emb|CBL87307.1| ribosomal protein S3 [uncultured Sphingobacteria bacterium]
          Length = 247

 Score =  221 bits (563), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 101/215 (46%), Positives = 151/215 (70%), Gaps = 1/215 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+   W S W+  G E+G  L ED KIR+YL   + +AG++KILIER 
Sbjct: 1   MGQKVNPISLRLGIVRGWESNWYG-GKEFGVKLAEDNKIRKYLNARMPRAGISKILIERM 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K   I V+++RPG++IGK G++++K+++++  +T  ++ +++ EV +PE++A L+ QSI
Sbjct: 60  LKRIIITVHTSRPGIVIGKGGSEVDKLKEEVKKLTKKDVQINIFEVKRPELDAMLVGQSI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQ+E RV F+RA+K A+ S MR GA GVK++ SGRLNGAE++RT+ + EGR+PL T RA
Sbjct: 120 AQQIEGRVNFKRAIKMAIASTMRMGAQGVKIMVSGRLNGAEMARTQQFKEGRIPLHTFRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTI 215
            +DY    A T YG  G+KV++   +     D +I
Sbjct: 180 DVDYALTEALTVYGKIGVKVWIFKEEVFGKRDLSI 214


>gi|323144970|ref|ZP_08079530.1| ribosomal protein S3 [Succinatimonas hippei YIT 12066]
 gi|322415249|gb|EFY06023.1| ribosomal protein S3 [Succinatimonas hippei YIT 12066]
          Length = 269

 Score =  221 bits (563), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 148/202 (73%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI  RLG+   ++S W+A  + + A +  D  +R+YL   LK   V+KI+I+R 
Sbjct: 1   MGQKVNPIGIRLGITKPYSSVWYASTANFPANIKSDSAVRKYLFEELKNDSVSKIVIDRP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+RKK++ +      ++++EV KP+++A L+A SI
Sbjct: 61  AKSIRVTIHTARPGIVIGKKGEDVEKLRKKIAEIAGVPAQVNISEVRKPDLDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMK+A+Q+AMR GA G+KV  SGRL GAE++R+E   EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKKAIQNAMRVGAKGIKVEVSGRLGGAEIARSEWLREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY  + A T YG  G+KV++
Sbjct: 181 DIDYAISEAVTTYGVIGVKVWI 202


>gi|90417575|ref|ZP_01225493.1| 30S ribosomal protein S3 [marine gamma proteobacterium HTCC2207]
 gi|90330596|gb|EAS45892.1| 30S ribosomal protein S3 [marine gamma proteobacterium HTCC2207]
          Length = 229

 Score =  221 bits (563), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 102/202 (50%), Positives = 145/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+     S W+A   +Y   LH+DL +RE+++  L  A V+++ IER 
Sbjct: 1   MGQKVHPTGIRLGIVKKHTSTWYAGNKDYADKLHQDLTVREFIRKRLAHASVSRVDIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
             + RI +++ARPG++IGKKG D+EK+R ++ N     + +++ E+ KP+++A L+AQ++
Sbjct: 61  SDSARITIHTARPGIVIGKKGEDVEKLRNEIGNKMGCPVTINIEEIRKPDLDANLVAQNV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERRV+FRRAMKRAVQ+AMR GA GVK+   GRL GAE++R+E Y EGRVPL TLRA
Sbjct: 121 AQQLERRVMFRRAMKRAVQNAMRGGALGVKIQVGGRLGGAEIARSEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY  A   T YG  G+KV++
Sbjct: 181 DIDYAAAEGNTTYGIIGVKVWI 202


>gi|289824219|ref|ZP_06543814.1| 30S ribosomal protein S3 [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 213

 Score =  221 bits (562), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 102/185 (55%), Positives = 137/185 (74%)

Query: 18  WNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTHKNCRIIVYSARPGLII 77
           WNS WFA   E+   L  D K+R+YL   L +A V++I+IER  K+ R+ +++ARPG++I
Sbjct: 2   WNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPAKSIRVTIHTARPGIVI 61

Query: 78  GKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSIAQQLERRVVFRRAMKRA 137
           GKKG D+EK+RK ++++      +++ EV KPE++A L+A SI  QLERRV+FRRAMKRA
Sbjct: 62  GKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRA 121

Query: 138 VQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRAHIDYGTAVAETAYGSCG 197
           VQ+AMR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA IDY T+ A T YG  G
Sbjct: 122 VQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIG 181

Query: 198 IKVYV 202
           +KV++
Sbjct: 182 VKVWI 186


>gi|281358719|ref|ZP_06245196.1| ribosomal protein S3 [Victivallis vadensis ATCC BAA-548]
 gi|281314845|gb|EFA98881.1| ribosomal protein S3 [Victivallis vadensis ATCC BAA-548]
          Length = 235

 Score =  221 bits (562), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 106/228 (46%), Positives = 152/228 (66%), Gaps = 6/228 (2%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSE-----YGALLHEDLKIREYLQCHLKQAGVAKI 55
           MGQK+NPI  R  +   W SRWFA         +G  L EDL IR++++    QA +A+I
Sbjct: 1   MGQKVNPIGLRTALTKNWESRWFADKKSGGKTLFGEWLQEDLAIRKFIKEKFAQAAIARI 60

Query: 56  LIERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMT-NSEIHLSVNEVPKPEINAT 114
            IER     R+ + SARPGL+IGKKG ++E ++ +++ +T   E+ + + EV + E NA 
Sbjct: 61  QIERFANRVRVTICSARPGLLIGKKGAELESMKAQVAKLTAGKEVFIEIAEVRRAETNAQ 120

Query: 115 LIAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVP 174
           L++++IAQQLERR+ FRRAMKRA+Q+AM  GADG+K+  +GRL GAEL+R E Y EGRVP
Sbjct: 121 LVSENIAQQLERRIGFRRAMKRAIQTAMDMGADGIKINCAGRLGGAELAREEQYKEGRVP 180

Query: 175 LQTLRAHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEHRV 222
           L TL+A+IDYG   A T  G+ G+KV++  +D   + D  + A + +V
Sbjct: 181 LHTLKANIDYGFTEANTTAGTIGVKVWICHKDSTEEQDYAVNAKKSKV 228


>gi|258591322|emb|CBE67621.1| 30S ribosomal subunit protein S3 [NC10 bacterium 'Dutch sediment']
          Length = 235

 Score =  221 bits (562), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 111/226 (49%), Positives = 152/226 (67%), Gaps = 6/226 (2%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P+ FRLG    W SRWFA    Y   LHEDLK R +++  +  AGV+ I IER 
Sbjct: 1   MGQKVHPVGFRLGFIKPWRSRWFAMKG-YADALHEDLKFRRFIKERVYHAGVSGIDIERK 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+++++ARPG+IIGKKG++++K++  LS MT   I L + EV + E++A LIA+ I
Sbjct: 60  ADQIRVVIHTARPGIIIGKKGSEVDKLKAALSGMTKKPIQLDIVEVRRAELDAQLIAEQI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QL RRV FRRAMK+ VQS+MR GA GV++  +GRL GAE++R E Y EGR+PL TLRA
Sbjct: 120 ASQLMRRVAFRRAMKKTVQSSMRLGAQGVQIACAGRLAGAEIARREWYREGRMPLNTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDS-----DSTIPAAEHR 221
           +IDYG   A+T YG  G+K +V   + + D+     +  IP A  R
Sbjct: 180 NIDYGFTQAKTTYGLIGVKCWVYHGEAMPDTLAAKQEREIPQAAPR 225


>gi|296333119|ref|ZP_06875573.1| 30S ribosomal protein S3 [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305672821|ref|YP_003864492.1| 30S ribosomal protein S3 [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296149735|gb|EFG90630.1| 30S ribosomal protein S3 [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305411064|gb|ADM36182.1| 30S ribosomal protein S3 [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 218

 Score =  221 bits (562), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 102/208 (49%), Positives = 148/208 (71%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+GV   W S+W+A G +Y   LHEDLKIREY+   L  A V+K+ IER 
Sbjct: 1   MGQKVNPVGLRIGVIRDWESKWYA-GKDYADFLHEDLKIREYISKRLSDASVSKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++A+PG++IGK G+++E +RK L+++T   +H+++ E+ + +++A L+A +I
Sbjct: 60  ANRVNITIHTAKPGMVIGKGGSEVESLRKALNSLTGKRVHINILEIKRADLDAQLVADNI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRA K+ +Q  MR GA GVK + SGRL GA+++R+E Y EG VPL TLRA
Sbjct: 120 ARQLENRVSFRRAQKQQIQRTMRAGAQGVKTMVSGRLGGADIARSEYYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T+ A+T YG  G+KV++  R EV
Sbjct: 180 DIDYATSEADTTYGKLGVKVWI-YRGEV 206


>gi|300742051|ref|ZP_07072072.1| ribosomal protein S3 [Rothia dentocariosa M567]
 gi|311111967|ref|YP_003983189.1| 30S ribosomal protein S3 [Rothia dentocariosa ATCC 17931]
 gi|300381236|gb|EFJ77798.1| ribosomal protein S3 [Rothia dentocariosa M567]
 gi|310943461|gb|ADP39755.1| 30S ribosomal protein S3 [Rothia dentocariosa ATCC 17931]
          Length = 265

 Score =  221 bits (562), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 106/206 (51%), Positives = 148/206 (71%), Gaps = 4/206 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFAR----GSEYGALLHEDLKIREYLQCHLKQAGVAKIL 56
           MGQKI+P  FRLG+     S+WFA     G  Y   + ED+KIRE L  +L +AGVAK+ 
Sbjct: 1   MGQKIHPNGFRLGITTEHVSKWFADSNKPGERYADFVREDVKIRELLAKNLDRAGVAKVE 60

Query: 57  IERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLI 116
           IERT    R+ +++ARPG++IG++G + ++IR +L  +T  +I L++ EV  P+++A L+
Sbjct: 61  IERTRDRVRVDIHTARPGIVIGRRGAEADRIRGELEKLTGKQIQLNILEVSNPDLSAQLV 120

Query: 117 AQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQ 176
           AQSIA+QL  RV FRRAMK+A+QSA R GA G+++  SGRL GAE+SR+E Y EGRVPL 
Sbjct: 121 AQSIAEQLAARVAFRRAMKKAIQSAQRAGAKGIRIQCSGRLGGAEMSRSEFYREGRVPLH 180

Query: 177 TLRAHIDYGTAVAETAYGSCGIKVYV 202
           TLRA+IDYG   A+T +G  G+KV++
Sbjct: 181 TLRANIDYGFFEAKTTFGRIGVKVWI 206


>gi|288818158|ref|YP_003432506.1| ribosomal protein S3 [Hydrogenobacter thermophilus TK-6]
 gi|288787558|dbj|BAI69305.1| ribosomal protein S3 [Hydrogenobacter thermophilus TK-6]
 gi|308751759|gb|ADO45242.1| ribosomal protein S3 [Hydrogenobacter thermophilus TK-6]
          Length = 231

 Score =  220 bits (561), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 101/203 (49%), Positives = 149/203 (73%), Gaps = 1/203 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK +PI FR+GV   WNS+WFA   +Y  LLHED+ I++Y++     AGV+K++IER 
Sbjct: 1   MGQKTHPIGFRIGVIKDWNSKWFASKRDYTKLLHEDINIKDYIKRRYASAGVSKVIIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNM-TNSEIHLSVNEVPKPEINATLIAQS 119
            +  ++ + +ARPG+IIG+KG ++E+++K + ++    ++ ++V+EV  PE++A L+A+ 
Sbjct: 61  AEKVKVRILAARPGIIIGRKGAEVEQLKKDIESIAVGKDVTITVDEVRVPELDAQLVAEE 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IA Q+ERRV  RRAMKRA+ +A + GA GVKV   GR+ GAEL+R E +L GR+PLQTLR
Sbjct: 121 IALQIERRVSHRRAMKRAIDNAFKAGAKGVKVQVKGRIGGAELARAEWFLVGRMPLQTLR 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYV 202
           A IDYG A A+T YG  G+KV++
Sbjct: 181 ADIDYGYATAQTKYGVLGVKVWI 203


>gi|239918193|ref|YP_002957751.1| SSU ribosomal protein S3P [Micrococcus luteus NCTC 2665]
 gi|281415616|ref|ZP_06247358.1| 30S ribosomal protein S3 [Micrococcus luteus NCTC 2665]
 gi|289706539|ref|ZP_06502889.1| ribosomal protein S3 [Micrococcus luteus SK58]
 gi|259495253|sp|C5CC56|RS3_MICLC RecName: Full=30S ribosomal protein S3
 gi|239839400|gb|ACS31197.1| SSU ribosomal protein S3P [Micrococcus luteus NCTC 2665]
 gi|289556674|gb|EFD50015.1| ribosomal protein S3 [Micrococcus luteus SK58]
          Length = 272

 Score =  220 bits (561), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 103/206 (50%), Positives = 146/206 (70%), Gaps = 4/206 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFA----RGSEYGALLHEDLKIREYLQCHLKQAGVAKIL 56
           MGQKINP  FRLG+     S WFA     G  Y   L ED+KIRE +   +++AG++K+ 
Sbjct: 1   MGQKINPNGFRLGITTDHVSHWFADSHKEGQRYADFLKEDVKIRELMTTGMERAGISKVE 60

Query: 57  IERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLI 116
           IERT    R+ +++ARPG++IG++G + ++IR +L  +T  +I L++ EV  PE +A L+
Sbjct: 61  IERTRDRVRVDIHTARPGIVIGRRGAEADRIRGELEKLTGKQIQLNILEVKNPETDAQLV 120

Query: 117 AQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQ 176
           AQ +A+QL  RV FRRAMK+A+QSAMR GA G+++  SGRL GAE+SR+E Y EGRVPL 
Sbjct: 121 AQGVAEQLASRVAFRRAMKKAIQSAMRAGAQGIRIQCSGRLGGAEMSRSEFYREGRVPLH 180

Query: 177 TLRAHIDYGTAVAETAYGSCGIKVYV 202
           TLRA+ID+G   A+T +G  G+KV++
Sbjct: 181 TLRANIDFGKFEAKTTFGRIGVKVWI 206


>gi|167755918|ref|ZP_02428045.1| hypothetical protein CLORAM_01438 [Clostridium ramosum DSM 1402]
 gi|237733234|ref|ZP_04563715.1| 30S ribosomal protein S3 [Mollicutes bacterium D7]
 gi|167703910|gb|EDS18489.1| hypothetical protein CLORAM_01438 [Clostridium ramosum DSM 1402]
 gi|229383615|gb|EEO33706.1| 30S ribosomal protein S3 [Coprobacillus sp. D7]
          Length = 217

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/203 (50%), Positives = 143/203 (70%), Gaps = 1/203 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  R+GVN  W+SRW+A   ++  LLHED+KIREYL   LK A VAK+ IER+
Sbjct: 1   MGQKVSPIGLRVGVNRNWDSRWYANDQDFAGLLHEDIKIREYLLKKLKTASVAKVEIERS 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMT-NSEIHLSVNEVPKPEINATLIAQS 119
                I V+++RPG++IGK G  ++ +RK++S M  + ++ +++ E+  P++ A L+A +
Sbjct: 61  KNRVTIFVHTSRPGVVIGKDGEAVDALRKEVSKMVKDKQVFINIVEIKNPDVVAQLVANN 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IA+QLE R  FR   KRA+Q AMR GA G+K   SGRL GA+++R E Y EG VPL TLR
Sbjct: 121 IAEQLENRASFRTVQKRAIQRAMRAGAKGIKTSVSGRLGGADMARAEGYSEGNVPLHTLR 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYV 202
           A IDY TA A+T YG  G+KV++
Sbjct: 181 ADIDYATAEADTTYGKLGVKVWI 203


>gi|90962400|ref|YP_536316.1| 30S ribosomal protein S3 [Lactobacillus salivarius UCC118]
 gi|227891550|ref|ZP_04009355.1| 30S ribosomal protein S3 [Lactobacillus salivarius ATCC 11741]
 gi|301300212|ref|ZP_07206424.1| ribosomal protein S3 [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|123086755|sp|Q1WS96|RS3_LACS1 RecName: Full=30S ribosomal protein S3
 gi|90821594|gb|ABE00233.1| SSU ribosomal protein S3P [Lactobacillus salivarius UCC118]
 gi|227866697|gb|EEJ74118.1| 30S ribosomal protein S3 [Lactobacillus salivarius ATCC 11741]
 gi|300215028|gb|ADJ79444.1| 30S ribosomal protein S3 [Lactobacillus salivarius CECT 5713]
 gi|300852153|gb|EFK79825.1| ribosomal protein S3 [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 218

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 97/202 (48%), Positives = 147/202 (72%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   R+G+   W+++W+A   ++ + LHEDL+IR+Y++  L  A V+ + IER 
Sbjct: 1   MGQKVNPTGLRVGIIRDWDAKWYAE-KDFASNLHEDLRIRKYIESKLADASVSTVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K   I +++A+PG++IGK G+++EK+RK+L+N+T   +H+++ E+ KP+++A L+ +SI
Sbjct: 60  AKRVNISIHTAKPGMVIGKGGSEVEKLRKELNNLTGKRVHINIVEIKKPDLDAKLVGESI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRAMK+A+Q  MR GA G+KV  +GRLNGA++SR E + EG VPL TLRA
Sbjct: 120 AEQLENRVAFRRAMKQAIQRTMRAGAKGIKVQVAGRLNGADMSRVERFSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY    A T YG  G+K ++
Sbjct: 180 DIDYSWVEAHTTYGKLGVKTWI 201


>gi|298531079|ref|ZP_07018480.1| ribosomal protein S3 [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509102|gb|EFI33007.1| ribosomal protein S3 [Desulfonatronospira thiodismutans ASO3-1]
          Length = 211

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 143/202 (70%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FR+G N  W SRW+++ S Y   + ED K+R YL+  L  AG+++I +ER 
Sbjct: 1   MGQKVHPYGFRVGYNKNWLSRWYSKTS-YPEFIIEDRKLRNYLKSKLYHAGISRIELERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               RII+Y++RPG++IG+KG +IE +R  L     +E  + VNEV +PE +A L+A++I
Sbjct: 60  ADKVRIIIYTSRPGIVIGRKGAEIENLRSDLKKKFQNEFSIEVNEVRRPETDAQLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV FRRAMKR+V  A +FGA G+K+  +GRL GAE++RTE   EGRVPL TLRA
Sbjct: 120 ALQLERRVAFRRAMKRSVSLAQKFGAQGIKISCAGRLGGAEIARTEWLREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG A A T YG  G+KV++
Sbjct: 180 DIDYGFAQARTTYGIIGVKVWI 201


>gi|310644196|ref|YP_003948955.1| 30S ribosomal protein s3 [Paenibacillus polymyxa SC2]
 gi|309249147|gb|ADO58714.1| 30S ribosomal protein S3 [Paenibacillus polymyxa SC2]
          Length = 221

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/209 (48%), Positives = 153/209 (73%), Gaps = 3/209 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+G+   W S+W+A G ++G LL ED+KIRE+L+  LK + V+++ IER 
Sbjct: 1   MGQKVNPVGLRIGIIRDWESKWYA-GKDFGDLLLEDVKIREHLKKRLKDSAVSRVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSE-IHLSVNEVPKPEINATLIAQS 119
                + +++A+PG++IGK G+++E +R +++ +   + +H++++E+  PE++A L+A+S
Sbjct: 60  ANRVNVTIHTAKPGMVIGKGGSEVENLRNEITKIAGGKKVHINISEIKNPELDAILVAES 119

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IAQQLERRV FRRA+K+A+Q  MR GA G+K    GRL GAE++R+E Y EG VPL TLR
Sbjct: 120 IAQQLERRVSFRRALKQAIQRTMRSGAKGIKTQVGGRLGGAEIARSEGYSEGTVPLHTLR 179

Query: 180 AHIDYGTAVAETAYGSCGIKVYVSLRDEV 208
           A IDYGTA A T YG  G+KV++  R EV
Sbjct: 180 ADIDYGTAEAHTTYGRLGVKVWI-YRGEV 207


>gi|221307934|ref|ZP_03589781.1| 30S ribosomal protein S3 [Bacillus subtilis subsp. subtilis str.
           168]
 gi|221312255|ref|ZP_03594060.1| 30S ribosomal protein S3 [Bacillus subtilis subsp. subtilis str.
           NCIB 3610]
 gi|221317189|ref|ZP_03598483.1| 30S ribosomal protein S3 [Bacillus subtilis subsp. subtilis str.
           JH642]
 gi|221321452|ref|ZP_03602746.1| 30S ribosomal protein S3 [Bacillus subtilis subsp. subtilis str.
           SMY]
 gi|255767030|ref|NP_388003.2| 30S ribosomal protein S3 [Bacillus subtilis subsp. subtilis str.
           168]
 gi|321313793|ref|YP_004206080.1| 30S ribosomal protein S3 [Bacillus subtilis BSn5]
 gi|239938933|sp|P21465|RS3_BACSU RecName: Full=30S ribosomal protein S3; Short=BS3; AltName:
           Full=BS2
 gi|1165309|gb|AAC45962.1| S3 [Bacillus subtilis]
 gi|225184657|emb|CAB11898.2| ribosomal protein S3 (BS3) [Bacillus subtilis subsp. subtilis str.
           168]
 gi|320020067|gb|ADV95053.1| 30S ribosomal protein S3 [Bacillus subtilis BSn5]
          Length = 218

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/208 (49%), Positives = 148/208 (71%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+GV   W S+W+A G +Y   LHEDLKIREY+   L  A V+K+ IER 
Sbjct: 1   MGQKVNPVGLRIGVIRDWESKWYA-GKDYADFLHEDLKIREYISKRLSDASVSKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++A+PG++IGK G+++E +RK L+++T   +H+++ E+ + +++A L+A +I
Sbjct: 60  ANRVNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINILEIKRADLDAQLVADNI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRA K+ +Q  MR GA GVK + SGRL GA+++R+E Y EG VPL TLRA
Sbjct: 120 ARQLENRVSFRRAQKQQIQRTMRAGAQGVKTMVSGRLGGADIARSEYYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T+ A+T YG  G+KV++  R EV
Sbjct: 180 DIDYATSEADTTYGKLGVKVWI-YRGEV 206


>gi|51244982|ref|YP_064866.1| 30S ribosomal protein S3 [Desulfotalea psychrophila LSv54]
 gi|61215519|sp|Q6AP65|RS3_DESPS RecName: Full=30S ribosomal protein S3
 gi|50876019|emb|CAG35859.1| probable 30S ribosomal protein S3 [Desulfotalea psychrophila LSv54]
          Length = 217

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 104/212 (49%), Positives = 149/212 (70%), Gaps = 1/212 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  RL +  TW+S W+A   +Y   L ED KIR++L+  L  AG++ + IERT
Sbjct: 1   MGQKVNPLGIRLNITRTWDSVWYA-DKDYSTFLIEDQKIRKFLKKRLSHAGLSSVKIERT 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  RI +++ARPG++IGKKG +IE ++++L  + + ++ L + EV +PE +A L+A +I
Sbjct: 60  GEQVRIKLFTARPGIVIGKKGAEIEILKRELEKLVSRKVTLDIQEVRRPEADAQLVADNI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQL RRV FRRAMK+AV SA+RFG  G+K+  SGRL GAE+SR E   EGRVPL TLRA
Sbjct: 120 AQQLARRVAFRRAMKKAVSSALRFGVQGIKIACSGRLGGAEMSRCEWVREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
            +DY  + + T YG  G+KV++   + +SD D
Sbjct: 180 DVDYALSESHTTYGIIGVKVWIFKGEVLSDKD 211


>gi|260886882|ref|ZP_05898145.1| ribosomal protein S3 [Selenomonas sputigena ATCC 35185]
 gi|330839320|ref|YP_004413900.1| ribosomal protein S3 [Selenomonas sputigena ATCC 35185]
 gi|260863481|gb|EEX77981.1| ribosomal protein S3 [Selenomonas sputigena ATCC 35185]
 gi|329747084|gb|AEC00441.1| ribosomal protein S3 [Selenomonas sputigena ATCC 35185]
          Length = 223

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 98/202 (48%), Positives = 149/202 (73%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   R+G+   W+++W+A   ++   LHED+KIR+YL+  L  AGV+KI  ER+
Sbjct: 1   MGQKVNPNGIRIGIVKDWDAKWYA-DKDFADNLHEDIKIRKYLKDSLGAAGVSKIETERS 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ +++A+PG++IG+ G+ IE+I++ L   T   + ++++E+ +P+++ATL+A++I
Sbjct: 60  KNRLKLTIHTAKPGMVIGRGGSGIEQIKEGLKGKTEKTVDINISEIRQPDLDATLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR+ FRRAMK++V   MR GA G+KV  SGRL GAE++R+E Y EG +PL TLRA
Sbjct: 120 AQQLERRIAFRRAMKQSVGRTMRLGAKGIKVKVSGRLGGAEIARSEAYREGSIPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYGTA A T YG  G+KV++
Sbjct: 180 DIDYGTAEARTTYGRIGVKVWI 201


>gi|291482494|dbj|BAI83569.1| 30S ribosomal protein S3 [Bacillus subtilis subsp. natto BEST195]
          Length = 218

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 99/202 (49%), Positives = 145/202 (71%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+GV   W S+W+A G +Y   LHEDLKIREY+   L  A V+K+ IER 
Sbjct: 1   MGQKVNPVGLRIGVIRDWESKWYA-GKDYADFLHEDLKIREYISKRLSDASVSKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++A+PG++IGK G+++E +RK L+++T   +H+++ E+ + +++A L+A +I
Sbjct: 60  ANRVNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINILEIKRADLDAQLVADNI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRA K+ +Q  MR GA GVK + SGRL GA+++R+E Y EG VPL TLRA
Sbjct: 120 ARQLENRVSFRRAQKQQIQRTMRAGAQGVKTMVSGRLGGADIARSEYYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A+T YG  G+KV++
Sbjct: 180 DIDYATSEADTTYGKLGVKVWI 201


>gi|90409296|ref|ZP_01217393.1| 30S ribosomal protein S3 [Psychromonas sp. CNPT3]
 gi|90309590|gb|EAS37778.1| 30S ribosomal protein S3 [Psychromonas sp. CNPT3]
          Length = 229

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 145/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   ++S W+A   E+   L  D  IR++L   LK A ++K+ IER 
Sbjct: 1   MGQKVHPNGIRLGITKAFSSTWYAGKKEFADNLFSDHLIRKFLTEKLKNASLSKVTIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K+ R+ +++ARPG++IGKKG D+EK+R  ++ M      ++++EV KPE++A L+A SI
Sbjct: 61  AKSVRVTIHTARPGVVIGKKGEDVEKLRTAIAKMAGVPAQINISEVRKPELDAKLVADSI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           + QLERRV+FRRAMKRAVQ+AMR GA G+KV  SGRL GAE++R E Y EGRVPL TLRA
Sbjct: 121 SSQLERRVMFRRAMKRAVQNAMRLGAKGIKVQVSGRLGGAEIARAEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY T+ A T YG  G+KV++
Sbjct: 181 DIDYSTSEALTVYGIIGVKVWI 202


>gi|296113791|ref|YP_003627729.1| 30S ribosomal protein S3 [Moraxella catarrhalis RH4]
 gi|295921485|gb|ADG61836.1| 30S ribosomal protein S3 [Moraxella catarrhalis RH4]
 gi|326562136|gb|EGE12464.1| 30S ribosomal protein S3 [Moraxella catarrhalis 7169]
 gi|326564499|gb|EGE14725.1| 30S ribosomal protein S3 [Moraxella catarrhalis 46P47B1]
 gi|326565682|gb|EGE15845.1| 30S ribosomal protein S3 [Moraxella catarrhalis 12P80B1]
 gi|326566251|gb|EGE16403.1| 30S ribosomal protein S3 [Moraxella catarrhalis 103P14B1]
 gi|326567097|gb|EGE17219.1| 30S ribosomal protein S3 [Moraxella catarrhalis BC1]
 gi|326568361|gb|EGE18441.1| 30S ribosomal protein S3 [Moraxella catarrhalis BC7]
 gi|326572262|gb|EGE22257.1| 30S ribosomal protein S3 [Moraxella catarrhalis BC8]
 gi|326574604|gb|EGE24544.1| 30S ribosomal protein S3 [Moraxella catarrhalis O35E]
 gi|326574860|gb|EGE24790.1| 30S ribosomal protein S3 [Moraxella catarrhalis 101P30B1]
 gi|326576184|gb|EGE26099.1| 30S ribosomal protein S3 [Moraxella catarrhalis CO72]
          Length = 240

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 108/210 (51%), Positives = 149/210 (70%), Gaps = 1/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++PI  RLGV    N+ W+A   +Y   L  D ++R +L+  L+ A V+ I IER 
Sbjct: 1   MGQKVHPIGIRLGVIKKHNANWYANPKQYSEYLLNDFQVRNFLRKKLEGAMVSHIYIERP 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I ++SARPG+IIGKKG DIE ++K+L+ +      +++ E+ +P+++A L+A+ I
Sbjct: 61  TGAAKITIHSARPGIIIGKKGEDIESLQKELTKLMGVPAQVNIQEISQPDLDARLVAEGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERRV+FRRAMKRAVQ++MR GA G+KV  SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 ASQLERRVMFRRAMKRAVQNSMRSGAQGIKVELSGRLGGAEIARTEWYREGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD 210
            IDY +  AET YG+ G+KV++  R EV D
Sbjct: 181 DIDYASVRAETTYGTIGVKVWI-FRSEVLD 209


>gi|269217129|ref|ZP_06160983.1| ribosomal protein S3 [Slackia exigua ATCC 700122]
 gi|269129266|gb|EEZ60351.1| ribosomal protein S3 [Slackia exigua ATCC 700122]
          Length = 237

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 106/202 (52%), Positives = 145/202 (71%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+ P  FRLG+   W SRW+A   +Y   L  DL IR +L+  L +A V+KI IER 
Sbjct: 1   MGQKVMPTGFRLGITEDWRSRWYA-DKDYAKTLENDLAIRRFLEKKLARAAVSKIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +IIV +ARPG++IGKKG +I+ +RK+++ +   ++++ V EV +PE++ATL+A+SI
Sbjct: 60  GDKTKIIVTTARPGVVIGKKGAEIDALRKEVAKVATGQVNIEVIEVKRPELDATLVARSI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRAM++AVQSA + GA G+++  SGRL GAE+SR E Y EGRVPL TLRA
Sbjct: 120 AEQLEGRVAFRRAMRKAVQSARKSGALGIRIQCSGRLGGAEMSRREWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG   A T  GS G+KV++
Sbjct: 180 KIDYGFTTASTTMGSIGVKVWI 201


>gi|299139136|ref|ZP_07032312.1| ribosomal protein S3 [Acidobacterium sp. MP5ACTX8]
 gi|298598816|gb|EFI54978.1| ribosomal protein S3 [Acidobacterium sp. MP5ACTX8]
          Length = 223

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 109/218 (50%), Positives = 151/218 (69%), Gaps = 3/218 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFA-RGSEYGALLHEDLKIREYLQCHLKQAGVAKILIER 59
           MGQK++P  FRLG+N  W SRWF  RG  +  LL ED+K++  L+  LK AGV+ + +ER
Sbjct: 1   MGQKVHPYGFRLGINKPWKSRWFTERG--FDKLLVEDVKLKAELREKLKAAGVSSVEVER 58

Query: 60  THKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQS 119
                R+I+ +ARPG+IIG+KG +I+K++  +   TN E+ + + EV KPE++A L+A++
Sbjct: 59  PGNKLRLIIRTARPGIIIGRKGAEIDKLKADIQKRTNREVFIDILEVNKPELDAQLVAEN 118

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IA QLE+RV FRRAM+++V SA+RFG  G+KV  SGRLNG E++R+E YL+GR+PL TLR
Sbjct: 119 IALQLEKRVSFRRAMRKSVDSALRFGCKGIKVRVSGRLNGNEIARSEWYLQGRLPLHTLR 178

Query: 180 AHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPA 217
           A IDYG A A T YG  G+K +V   D         PA
Sbjct: 179 ADIDYGFAEAHTTYGIIGVKTWVYRGDIYEQKKRREPA 216


>gi|311070769|ref|YP_003975692.1| 30S ribosomal protein S3 [Bacillus atrophaeus 1942]
 gi|310871286|gb|ADP34761.1| 30S ribosomal protein S3 [Bacillus atrophaeus 1942]
          Length = 218

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 101/208 (48%), Positives = 148/208 (71%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+GV   W S+W+A G +Y   LHEDLKIREY+   L  A V+K+ IER 
Sbjct: 1   MGQKVNPVGLRIGVIRDWESKWYA-GKDYADFLHEDLKIREYISKRLSDASVSKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++A+PG++IGK G+++E +RK L+++T   +H+++ E+ + +++A L+A +I
Sbjct: 60  ANRVNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINILEIKRADLDAQLVADNI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE R+ FRRA K+ +Q  MR GA GVK + SGRL GA+++R+E Y EG VPL TLRA
Sbjct: 120 ARQLENRISFRRAQKQQIQRTMRAGAQGVKTMVSGRLGGADIARSEYYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T+ A+T YG  G+KV++  R EV
Sbjct: 180 DIDYATSEADTTYGKLGVKVWI-YRGEV 206


>gi|304438368|ref|ZP_07398309.1| 30S ribosomal protein S3 [Selenomonas sp. oral taxon 149 str.
           67H29BP]
 gi|304368734|gb|EFM22418.1| 30S ribosomal protein S3 [Selenomonas sp. oral taxon 149 str.
           67H29BP]
          Length = 223

 Score =  220 bits (560), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 101/216 (46%), Positives = 151/216 (69%), Gaps = 2/216 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   RLG+   W++RW+A   ++   LHED+KIR+YL+  L+ AGV ++  ER+
Sbjct: 1   MGQKVNPHGIRLGIVKDWDARWYA-DKDFAQNLHEDIKIRDYLKKSLQTAGVPRVETERS 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ +++A+PG++IG+ G+ IE+I++ L  +T   + +++ E+ +P+++ATL+A++I
Sbjct: 60  KNRLKLTIHTAKPGMVIGRGGSGIEQIKEGLKGLTEKRVDINIAEIKQPDLDATLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK+AV   MR GA G+K+  SGRL GAE++R E Y EG +PL TLRA
Sbjct: 120 AAQLERRIAFRRAMKQAVGRTMRLGAKGIKIAVSGRLGGAEIARRESYREGSIPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIP 216
            IDYGTA A T YG  GIKV++  + EV       P
Sbjct: 180 DIDYGTAEAHTTYGRIGIKVWI-FKGEVLPDKKQAP 214


>gi|161506879|ref|YP_001576833.1| 30S ribosomal protein S3 [Lactobacillus helveticus DPC 4571]
 gi|172048373|sp|A8YXL1|RS3_LACH4 RecName: Full=30S ribosomal protein S3
 gi|160347868|gb|ABX26542.1| 30S ribosomal protein S3 [Lactobacillus helveticus DPC 4571]
          Length = 224

 Score =  219 bits (559), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/219 (47%), Positives = 156/219 (71%), Gaps = 2/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRLGV   W S+W+A    Y   L+EDL+IR+++   LK A V+ + IER 
Sbjct: 1   MGQKINPNGFRLGVIHDWESKWYA-DKGYKETLNEDLRIRKFISKKLKDASVSTVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++A+PG++IGK G+++E +RK+L+ +T+ ++H+++ E+ KP+++A L+A SI
Sbjct: 60  ANRINISIHTAKPGMVIGKGGSEVEALRKQLNALTDKQVHINIVEIKKPDLDAELVADSI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE R+ FRRAM++A Q AMR GA G+KV  SGRLNGA+++R E + EGRVPLQTLRA
Sbjct: 120 ARQLEARIAFRRAMRQATQRAMRAGAKGIKVQTSGRLNGADMARREWHTEGRVPLQTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDY    A T YG  G++V+++ R E+  +    PA++
Sbjct: 180 DIDYAWVNAFTTYGEIGVQVWIN-RGEILPTRKNKPASK 217


>gi|295398294|ref|ZP_06808336.1| 30S ribosomal protein S3 [Aerococcus viridans ATCC 11563]
 gi|294973433|gb|EFG49218.1| 30S ribosomal protein S3 [Aerococcus viridans ATCC 11563]
          Length = 216

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 145/202 (71%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  R+GV   W++RW+A   ++   LHEDL IREY+   LK A V+++ IER 
Sbjct: 1   MGQKINPIGMRIGVIKDWDARWYAE-KDFADTLHEDLHIREYIAETLKDASVSQVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +++A+PG++IGK G++++ +RK L+N T  ++H+++ E+ KPE++A L+ +SI
Sbjct: 60  ANKVNVNIHTAKPGMVIGKGGSEVDALRKTLNNRTGKKVHINIVEIKKPELDAKLVGESI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE RV FRRA K+A+Q  M+ GA G+KV  SGRLNGA+++R+E  +EG VPL TLRA
Sbjct: 120 AQQLENRVAFRRAQKQAIQRTMKSGAKGIKVQISGRLNGADMARSETQVEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY    A+T YG  GIK +V
Sbjct: 180 DIDYSWEEADTTYGKIGIKTWV 201


>gi|58584593|ref|YP_198166.1| 30S ribosomal protein S3 [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|75507982|sp|Q5GSV0|RS3_WOLTR RecName: Full=30S ribosomal protein S3
 gi|58418909|gb|AAW70924.1| Ribosomal protein S3 [Wolbachia endosymbiont strain TRS of Brugia
           malayi]
          Length = 206

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/205 (52%), Positives = 149/205 (72%), Gaps = 2/205 (0%)

Query: 1   MGQKINPILFRLGVNC-TWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIER 59
           MGQK+NPI FRL +N  TW+S W+A   +Y   LH+DL IR Y+    K AG++KI+IER
Sbjct: 1   MGQKVNPIGFRLKINNNTWDSVWYAN-KDYKEKLHQDLFIRSYINESFKHAGLSKIIIER 59

Query: 60  THKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQS 119
                 + ++S+RPG+IIGKKG DIEK+++K++    + + ++V  + +PEI+A LI+ S
Sbjct: 60  KVDLLSVTIHSSRPGVIIGKKGLDIEKVKQKIAEKVKNSVEVNVVGIKRPEIDAALISSS 119

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IAQQLE+RV FRRAMK+A+QS +R G  G+KV  SGRL GAE++RTE Y EGR+PL TLR
Sbjct: 120 IAQQLEKRVSFRRAMKKAIQSCLRMGGGGIKVGCSGRLGGAEIARTEWYKEGRLPLHTLR 179

Query: 180 AHIDYGTAVAETAYGSCGIKVYVSL 204
           A+IDY    A+T YG  G+KV+V +
Sbjct: 180 ANIDYAFCEAKTIYGIIGVKVWVYI 204


>gi|328953152|ref|YP_004370486.1| ribosomal protein S3 [Desulfobacca acetoxidans DSM 11109]
 gi|328453476|gb|AEB09305.1| ribosomal protein S3 [Desulfobacca acetoxidans DSM 11109]
          Length = 216

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/214 (51%), Positives = 151/214 (70%), Gaps = 4/214 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYL--QCHLKQAGVAKILIE 58
           MGQK++P+ FRLG    W+S WFAR   Y  LL ED KIR+++  +  L+ AG+A I IE
Sbjct: 1   MGQKVHPVGFRLGSYRRWHSYWFAR-KNYSDLLLEDQKIRKFIKNEKELQGAGIAAIDIE 59

Query: 59  RTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQ 118
           R     ++ ++++RPG++IG+KG  IE++R+KL  +   E+ + ++EV KPE+NA L+A+
Sbjct: 60  RAANKVKMKIHTSRPGIVIGQKGKKIEELRQKLQRLIGRELIVDIHEVRKPELNAQLVAE 119

Query: 119 SIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTL 178
           +IA QLERRV FRRAMK+AV  AM+FGA G+KV  +GRL GAE++R E Y EGRVPL TL
Sbjct: 120 NIALQLERRVAFRRAMKKAVGQAMKFGAQGIKVRVAGRLGGAEMARREWYREGRVPLHTL 179

Query: 179 RAHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
           RA IDYG A A T YG  GIK ++  + E+   D
Sbjct: 180 RADIDYGVAEARTTYGVIGIKAWI-FKGEILSED 212


>gi|172040001|ref|YP_001799715.1| 30S ribosomal protein S3 [Corynebacterium urealyticum DSM 7109]
 gi|226697690|sp|B1VEU2|RS3_CORU7 RecName: Full=30S ribosomal protein S3
 gi|171851305|emb|CAQ04281.1| 30S ribosomal protein S3 [Corynebacterium urealyticum DSM 7109]
          Length = 248

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/210 (50%), Positives = 147/210 (70%), Gaps = 2/210 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI P   RLG+   W SRW+A   +Y   L ED+KIRE+L   L++AG+A ++IERT
Sbjct: 1   MGQKIQPHGLRLGITSDWRSRWYA-DKQYADYLAEDIKIREFLSEGLERAGIANVVIERT 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           H   R+ +++ARPG++IG++G++ ++IR KL  +T  ++ L++ EV   + NA L+AQSI
Sbjct: 60  HDRVRVDIHTARPGIVIGRRGSEADRIRGKLEKLTGKQVQLNILEVKNVDANAQLVAQSI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRF-GADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           A+QL  RV FRRAM++A+Q AMR     G+KV+ SGRL GAE+ RTE Y EGRVPL TLR
Sbjct: 120 AEQLVNRVAFRRAMRKAIQGAMRQPQVKGIKVVCSGRLGGAEMGRTERYHEGRVPLHTLR 179

Query: 180 AHIDYGTAVAETAYGSCGIKVYVSLRDEVS 209
           A IDYGT  A T +G  G+KV++   D V 
Sbjct: 180 AEIDYGTHEAHTTFGRIGVKVWIYKGDVVG 209


>gi|295106945|emb|CBL04488.1| SSU ribosomal protein S3P [Gordonibacter pamelaeae 7-10-1-b]
          Length = 237

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/219 (49%), Positives = 150/219 (68%), Gaps = 1/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG+   W SRW++   +Y   L  DL IR++L  +L +A V+K+ IER 
Sbjct: 1   MGQKVSPTGFRLGITEDWRSRWYS-DKDYAKNLENDLAIRKFLDKYLARAAVSKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++IV +ARPG++IGKKG +I+ +RKKL  + +  + + V EV +PE++A LIAQS+
Sbjct: 60  GDKIKVIVTTARPGVVIGKKGAEIDSLRKKLEKVASGPVSIEVVEVKRPELDAALIAQSV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRAM++AVQSA + GA G+++  SGRL GAE+SR E Y EGRVPL TLRA
Sbjct: 120 AEQLEGRVAFRRAMRKAVQSARKSGAKGIRIQCSGRLGGAEMSRREWYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDYG   A T  GS G++V+V   + +    +  PA E
Sbjct: 180 KIDYGFCTAATTMGSIGVQVWVYHGEMLPGQKAPNPALE 218


>gi|222150451|ref|YP_002559604.1| 30S ribosomal protein S3 [Macrococcus caseolyticus JCSC5402]
 gi|222119573|dbj|BAH16908.1| 30S ribosomal protein S3 [Macrococcus caseolyticus JCSC5402]
          Length = 217

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 100/202 (49%), Positives = 148/202 (73%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINPI  R+G+   W+++WFA   ++  LLHEDLK+R+Y++ +LK A V+++ IER 
Sbjct: 1   MGQKINPIGLRVGIIRDWDAKWFAE-KDFATLLHEDLKVRKYIEENLKDASVSRVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++ +PG++IGK G++IEK+R  L+++T   +H++V EV K +++A L+A++I
Sbjct: 60  ANRVNIAIHTGKPGMVIGKGGSEIEKLRNNLNSLTGKRVHINVVEVKKVDMDARLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRA K+A+Q AM+ GA G+K   SGRL GA+++R E Y EG VPL TLRA
Sbjct: 120 ARQLENRVSFRRAQKQAIQRAMKLGAKGIKTQVSGRLGGADIARAEQYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDY  A A+T YG  G+KV++
Sbjct: 180 DIDYAHAEADTTYGKLGVKVWI 201


>gi|94985961|ref|YP_605325.1| 30S ribosomal protein S3 [Deinococcus geothermalis DSM 11300]
 gi|122986551|sp|Q1IX78|RS3_DEIGD RecName: Full=30S ribosomal protein S3
 gi|94556242|gb|ABF46156.1| ribosomal protein S3 [Deinococcus geothermalis DSM 11300]
          Length = 248

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/203 (54%), Positives = 142/203 (69%), Gaps = 1/203 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG KINP  FRLG+   WNSRW+A   +Y  LL ED KIR+ +   L  AG+A+I IER 
Sbjct: 1   MGNKINPNGFRLGITKGWNSRWYAGKKQYSQLLKEDEKIRKLVSQKLAAAGIARIEIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNS-EIHLSVNEVPKPEINATLIAQS 119
            +   +I+ +A+PG++IGK G  I+++R ++  + ++  + ++V E+P P I+A L+A  
Sbjct: 61  GQQVNVIISAAKPGIVIGKGGESIKQLRGEIERLVSAGTVAVNVAEIPNPNISAPLVALR 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IA+Q+ERR  FRRAMK+A Q  M  GA GVKVI SGRL GAE +RTE  LEGRVPL TLR
Sbjct: 121 IAEQIERRFAFRRAMKQAAQRVMESGARGVKVILSGRLGGAEQARTEKVLEGRVPLHTLR 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYV 202
           A IDYGTA AET YGS GIKV V
Sbjct: 181 ADIDYGTARAETTYGSLGIKVLV 203


>gi|188996233|ref|YP_001930484.1| ribosomal protein S3 [Sulfurihydrogenibium sp. YO3AOP1]
 gi|226697766|sp|B2V7K7|RS3_SULSY RecName: Full=30S ribosomal protein S3
 gi|188931300|gb|ACD65930.1| ribosomal protein S3 [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 227

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 99/209 (47%), Positives = 151/209 (72%), Gaps = 1/209 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P  FRLG+   W S+W++   +Y   LHED+KIR++++   KQAG++ +LIER 
Sbjct: 1   MGQKVHPTGFRLGITQDWKSKWYSEKKKYTQTLHEDIKIRKFIEERYKQAGISSVLIERL 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNS-EIHLSVNEVPKPEINATLIAQS 119
               R+ + +ARPG++IG KG ++EK+ + +  +T++ E+ ++V+EV KPE++A L+A+ 
Sbjct: 61  GDRMRVKIMAARPGIVIGAKGAEVEKLNEIIKKLTSTKEVIVNVDEVKKPELDAKLVAED 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IA QLERRV  RRAMK+A+ SA++ GA G+K    GR+ G +L+R E ++ GR+PLQTL+
Sbjct: 121 IALQLERRVTHRRAMKKAIDSALKAGAKGIKTQVGGRIGGVDLARKEWFMAGRMPLQTLK 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYVSLRDEV 208
           A IDYGTA A T YG  GIKV++   D++
Sbjct: 181 ADIDYGTARASTKYGILGIKVWIYKGDKL 209


>gi|308070969|ref|YP_003872574.1| 30S ribosomal protein S3 [Paenibacillus polymyxa E681]
 gi|305860248|gb|ADM72036.1| 30S ribosomal protein S3 [Paenibacillus polymyxa E681]
          Length = 221

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/209 (48%), Positives = 153/209 (73%), Gaps = 3/209 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+G+   W S+W+A G ++G LL ED++IRE+L+  LK + V+++ IER 
Sbjct: 1   MGQKVNPVGLRIGIIRDWESKWYA-GKDFGDLLLEDVRIREHLKKRLKDSAVSRVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSE-IHLSVNEVPKPEINATLIAQS 119
                + +++A+PG++IGK G+++E +R +++ +   + +H++++E+  PE++A L+A+S
Sbjct: 60  ANRVNVTIHTAKPGMVIGKGGSEVENLRNEITKIAGGKKVHINISEIKNPELDAILVAES 119

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IAQQLERRV FRRA+K+A+Q  MR GA G+K    GRL GAE++R+E Y EG VPL TLR
Sbjct: 120 IAQQLERRVSFRRALKQAIQRTMRSGAKGIKTQVGGRLGGAEIARSEGYSEGTVPLHTLR 179

Query: 180 AHIDYGTAVAETAYGSCGIKVYVSLRDEV 208
           A IDYGTA A T YG  G+KV++  R EV
Sbjct: 180 ADIDYGTAEAHTTYGRLGVKVWI-YRGEV 207


>gi|786159|dbj|BAA08837.1| ribosomal protein S3 [Bacillus subtilis]
          Length = 218

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 102/208 (49%), Positives = 147/208 (70%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+GV   W S+W+A G +Y   LHEDLKIREY+   L  A V+K+ IER 
Sbjct: 1   MGQKVNPVGLRIGVIRDWESKWYA-GKDYADFLHEDLKIREYISKRLSDASVSKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++A+PG++IGK G+++E +RK L+++T   +H+++ E+ + +++A L+A +I
Sbjct: 60  ANRVNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINILEIKRADLDAQLVADNI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE RV FRRA K+ +Q  MR GA GVK + SGRL GA+++R E Y EG VPL TLRA
Sbjct: 120 ARQLENRVSFRRAQKQQIQRTMRAGAQGVKTMVSGRLGGADIARPEYYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T+ A+T YG  G+KV++  R EV
Sbjct: 180 DIDYATSEADTTYGKLGVKVWI-YRGEV 206


>gi|260102361|ref|ZP_05752598.1| 30S ribosomal protein S3 [Lactobacillus helveticus DSM 20075]
 gi|260083805|gb|EEW67925.1| 30S ribosomal protein S3 [Lactobacillus helveticus DSM 20075]
 gi|328463370|gb|EGF35043.1| 30S ribosomal protein S3 [Lactobacillus helveticus MTCC 5463]
          Length = 224

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 105/219 (47%), Positives = 155/219 (70%), Gaps = 2/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRLGV   W S+W+A    Y   L+EDL+IR+++   LK A V+ + IER 
Sbjct: 1   MGQKINPNGFRLGVIHDWESKWYA-DKGYKETLNEDLRIRKFISKKLKDASVSTVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++A+PG++IGK G+++E +RK+L+ +T  ++H+++ E+ KP+++A L+A SI
Sbjct: 60  ANRINISIHTAKPGMVIGKGGSEVEALRKQLNALTGKQVHINIVEIKKPDLDAELVADSI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE R+ FRRAM++A Q AMR GA G+KV  SGRLNGA+++R E + EGRVPLQTLRA
Sbjct: 120 ARQLEARIAFRRAMRQATQRAMRAGAKGIKVQTSGRLNGADMARREWHTEGRVPLQTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDY    A T YG  G++V+++ R E+  +    PA++
Sbjct: 180 DIDYAWVNAFTTYGEIGVRVWIN-RGEILPTRKNKPASK 217


>gi|169830442|ref|YP_001716424.1| ribosomal protein S3 [Candidatus Desulforudis audaxviator MP104C]
 gi|226697697|sp|B1I1J4|RS3_DESAP RecName: Full=30S ribosomal protein S3
 gi|169637286|gb|ACA58792.1| ribosomal protein S3 [Candidatus Desulforudis audaxviator MP104C]
          Length = 218

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 97/202 (48%), Positives = 151/202 (74%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P   RLG+   W+++W+A   ++  LL ED+KIR+Y++  L  AG+++I IERT
Sbjct: 1   MGQKVDPRGLRLGIVRDWDAKWYAGKKDFSNLLLEDVKIRDYIKSKLLAAGISRIHIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               RI +++A+PG++IG+ GT++E +RK+L  +T  +I +++ E+  PE++A L+A+++
Sbjct: 61  ANRVRIAIHTAKPGVVIGRGGTEVEVLRKELEKLTGRQISINIVEIKTPELDAQLVAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QL+RRV FRRAMK+AV  AM+ GA G+++  +GRL GAE++RTE Y EG+VPL TLRA
Sbjct: 121 AAQLQRRVAFRRAMKQAVGRAMKLGAKGIRISVAGRLAGAEIARTEWYSEGKVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG + A+T YG  G+KV++
Sbjct: 181 DIDYGFSEAKTTYGKIGVKVWI 202


>gi|149195492|ref|ZP_01872570.1| 30S ribosomal protein S3 [Caminibacter mediatlanticus TB-2]
 gi|149134374|gb|EDM22872.1| 30S ribosomal protein S3 [Caminibacter mediatlanticus TB-2]
          Length = 238

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/203 (51%), Positives = 148/203 (72%), Gaps = 1/203 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK NPI  RLG+N  W SRWF   +     +  D ++R++L+  L  AG++ I+IERT
Sbjct: 1   MGQKTNPIGLRLGINKNWRSRWFINYNTMPENVLNDYELRKFLKKKLYYAGISDIIIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMT-NSEIHLSVNEVPKPEINATLIAQS 119
            K  RI +++A+PG+IIGK G+++E ++K+L  +  + E+ L++ E  KP+I+A L A++
Sbjct: 61  AKKVRITIFAAKPGIIIGKGGSEVEALKKELQKLVGDKELILNIKEERKPQISAQLAAEN 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           +A Q+ERRV FRRAMK+ +Q+A++ GA G+KV  SGRLNGAE++RTE YLEGRVPL TLR
Sbjct: 121 VATQIERRVAFRRAMKKVIQNALKNGAKGIKVQVSGRLNGAEMARTEWYLEGRVPLHTLR 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYV 202
           A IDYG A A T YG  G+KV++
Sbjct: 181 AKIDYGFAEALTTYGIIGVKVWI 203


>gi|291542041|emb|CBL15151.1| SSU ribosomal protein S3P [Ruminococcus bromii L2-63]
          Length = 223

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/219 (48%), Positives = 152/219 (69%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   R+GV   W+SRWFA   ++GA L ED  +R+ L+  L   G++KI IER 
Sbjct: 1   MGQKVNPHGLRVGVIKDWDSRWFANKKDFGATLVEDYNLRKTLKAQLYNFGISKIEIERD 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            K  +I ++ A+PGL+IGK G++IEK+R +   M    + +++ EV  PE++A L+A+SI
Sbjct: 61  GKKVKISIHCAKPGLVIGKGGSEIEKLRAQCEKMLGKPVAINIVEVKAPELDAQLVAESI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+R+ FRRAMK ++ +AMR GA G+K++ SGRL GAE++R+E Y EG +PLQTLRA
Sbjct: 121 AQQLEKRISFRRAMKMSIGNAMRRGAKGIKIMCSGRLGGAEIARSEQYHEGTIPLQTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDYG A A T YG  G+KV++   + +++  S  P  E
Sbjct: 181 DIDYGFAEANTTYGKVGVKVWLYKGEVLNEVKSRKPRRE 219


>gi|15605251|ref|NP_220037.1| 30S ribosomal protein S3 [Chlamydia trachomatis D/UW-3/CX]
 gi|7388191|sp|O84527|RS3_CHLTR RecName: Full=30S ribosomal protein S3
 gi|3328959|gb|AAC68123.1| S3 Ribosomal Protein [Chlamydia trachomatis D/UW-3/CX]
 gi|297748652|gb|ADI51198.1| SSU ribosomal protein S3P [Chlamydia trachomatis D-EC]
 gi|297749532|gb|ADI52210.1| SSU ribosomal protein S3P [Chlamydia trachomatis D-LC]
          Length = 224

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 107/220 (48%), Positives = 147/220 (66%), Gaps = 5/220 (2%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK  PI FR  V   W S W+    E+G  L ED+KIRE+L+      G A  +++R 
Sbjct: 1   MGQKGCPIGFRTAVTKKWRSLWYGNNQEFGKFLIEDVKIREFLKKKPSCQGAAGFVVKRM 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +++ARPGL+IGKKG ++E ++ +L  +T+ ++ + + EV +PE+NA L+A  I
Sbjct: 61  SGKIEVTIHTARPGLVIGKKGAEVESLKAELKKLTDKDVWVEIAEVKRPELNAQLVADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+Q+ERRV FRRAMK+A+QS M  GA GVKV  SGRL GAE++R+E Y  GRVPL TLRA
Sbjct: 121 AKQIERRVSFRRAMKKALQSVMDAGALGVKVQVSGRLAGAEIARSEWYKNGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEH 220
            IDY TA AET YG  GIKV+++L ++       +PAA H
Sbjct: 181 DIDYATASAETTYGIIGIKVWINLGEK-----KAVPAANH 215


>gi|329121834|ref|ZP_08250449.1| 30S ribosomal protein S3 [Dialister micraerophilus DSM 19965]
 gi|327467772|gb|EGF13264.1| 30S ribosomal protein S3 [Dialister micraerophilus DSM 19965]
          Length = 249

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 104/202 (51%), Positives = 145/202 (71%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   R+GV   WNS+WFA    Y A L ED KIR++L+ HL  AG++KI I+R 
Sbjct: 1   MGQKVNPHGMRVGVINDWNSKWFAE-KNYAAQLVEDTKIRQFLKKHLFVAGISKIGIKRV 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               +I +Y+A+PG++IG+ GT IE I+K L  +T+ EI + + E+   +++A L+ ++I
Sbjct: 60  GNRVKIAIYTAKPGMVIGRGGTGIEDIKKALKTVTDKEIDIDILEIKSSDLSAILVGENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRA+K+AV   MR GA GVKV  SGRL GAE++ +E Y EG +PLQTLRA
Sbjct: 120 ASQLERRIGFRRAVKQAVGRTMRSGAKGVKVTVSGRLGGAEIAHSESYREGSIPLQTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
           +IDYG +VA T +G+ GIKV++
Sbjct: 180 NIDYGVSVAHTTFGAIGIKVWI 201


>gi|319938501|ref|ZP_08012895.1| 30S ribosomal protein S3 [Coprobacillus sp. 29_1]
 gi|319806417|gb|EFW03084.1| 30S ribosomal protein S3 [Coprobacillus sp. 29_1]
          Length = 217

 Score =  219 bits (558), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 100/203 (49%), Positives = 144/203 (70%), Gaps = 1/203 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK++P+  R+GVN  WNSRW+A   ++ +LLHED++IRE+L   LK A VA I IER+
Sbjct: 1   MGQKVSPVGLRVGVNRDWNSRWYANDKDFASLLHEDIRIREFLNAKLKGAYVANIEIERS 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMT-NSEIHLSVNEVPKPEINATLIAQS 119
                I V+++RPG++IGK G  ++ +RK+++ +  + ++ +++ E+  P++ A L+A  
Sbjct: 61  KNRVNIFVHTSRPGVVIGKDGEAVDALRKQVTKLVKDKQVFINIVEIKNPDVVAQLVANR 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IA+QLE R  FR   KRA+QSAMR GA G+K   SGRL GA+++RTE Y EG VPL TLR
Sbjct: 121 IAEQLENRASFRTVQKRAIQSAMRAGAKGIKTCVSGRLGGADMARTEGYSEGNVPLHTLR 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYV 202
           A IDY TA A+T YG  G+KV++
Sbjct: 181 ADIDYATAEADTTYGKLGVKVWI 203


>gi|76789259|ref|YP_328345.1| 30S ribosomal protein S3 [Chlamydia trachomatis A/HAR-13]
 gi|91207647|sp|Q3KLH5|RS3_CHLTA RecName: Full=30S ribosomal protein S3
 gi|76167789|gb|AAX50797.1| SSU ribosomal protein S3P [Chlamydia trachomatis A/HAR-13]
          Length = 224

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 107/220 (48%), Positives = 146/220 (66%), Gaps = 5/220 (2%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK  PI FR  V   W S W+    E+G  L ED+KIRE+L+      G A  +++R 
Sbjct: 1   MGQKGCPIGFRTAVTKKWRSLWYGNNQEFGKFLIEDVKIREFLKKKPSCQGAAGFVVKRM 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +++ARPGL+IGKKG ++E ++ +L  +T  ++ + + EV +PE+NA L+A  I
Sbjct: 61  SGKIEVTIHTARPGLVIGKKGAEVESLKAELKKLTGKDVWVEIAEVKRPELNAQLVADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+Q+ERRV FRRAMK+A+QS M  GA GVKV  SGRL GAE++R+E Y  GRVPL TLRA
Sbjct: 121 AKQIERRVSFRRAMKKALQSVMDAGALGVKVQVSGRLAGAEIARSEWYKNGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEH 220
            IDY TA AET YG  GIKV+++L ++       +PAA H
Sbjct: 181 DIDYATASAETTYGIIGIKVWINLSEK-----KAVPAANH 215


>gi|227832225|ref|YP_002833932.1| 30S ribosomal protein S3 [Corynebacterium aurimucosum ATCC 700975]
 gi|262183920|ref|ZP_06043341.1| 30S ribosomal protein S3 [Corynebacterium aurimucosum ATCC 700975]
 gi|254764525|sp|C3PKQ8|RS3_CORA7 RecName: Full=30S ribosomal protein S3
 gi|227453241|gb|ACP31994.1| 30S ribosomal protein S3 [Corynebacterium aurimucosum ATCC 700975]
          Length = 248

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 109/221 (49%), Positives = 155/221 (70%), Gaps = 5/221 (2%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P   RLG+   W + W+A   +Y   + ED+KIREYL+  L +AG+A ++IERT
Sbjct: 1   MGQKIHPHGLRLGITSDWKTHWYA-DKDYANYVAEDIKIREYLEKGLDRAGIADVVIERT 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+ +++ARPG++IG++G + ++IR++L  +T   + L++ EV + + NATL+AQS+
Sbjct: 60  RDRVRVDIHTARPGIVIGRRGAEADRIRRELEKLTGKMVALNILEVKQVDANATLVAQSV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRF-GADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           A+QL  RV FRRAM++A+QSAMR     G+K++ SGRL GAE+SRTE Y EGRVPL TLR
Sbjct: 120 AEQLVNRVAFRRAMRKAIQSAMRQPQVKGIKILLSGRLGGAEMSRTERYHEGRVPLHTLR 179

Query: 180 AHIDYGTAVAETAYGSCGIKVYVSLRDEVS---DSDSTIPA 217
           A IDYGTA A T +G  GIKV++   D V    +S+   PA
Sbjct: 180 AEIDYGTAEAHTTFGRIGIKVWIYKGDVVGGVRESELNAPA 220


>gi|260584422|ref|ZP_05852169.1| 30S ribosomal protein S3 [Granulicatella elegans ATCC 700633]
 gi|260157940|gb|EEW93009.1| 30S ribosomal protein S3 [Granulicatella elegans ATCC 700633]
          Length = 220

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 97/208 (46%), Positives = 149/208 (71%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+PI  R+G+   W+S+W+A   ++   LHEDLKIR+Y++  L  A V+ I +ER 
Sbjct: 1   MGQKIHPIGMRVGIIRDWDSKWYAE-KDFAEFLHEDLKIRDYIRKQLSDASVSTIEVERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +++A+PG++IGK G++++K+R  L+ +T  ++H+++ E+ KP+++A L+A+ I
Sbjct: 60  ANRVNVSIHTAKPGMVIGKGGSEVDKLRTNLNKLTGKKVHINIVEIKKPDLDAKLVAEGI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+ LERR+ FRRA K+A+Q  MR GA G+K + SGRLNGA+++R+E Y EG VPL TLRA
Sbjct: 120 ARDLERRIAFRRAQKQAIQRTMRAGAKGIKTMVSGRLNGADIARSESYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY    A+T YG  G+K ++  RDEV
Sbjct: 180 DIDYAWEEADTTYGKLGVKTWI-YRDEV 206


>gi|72163039|ref|YP_290696.1| 30S ribosomal protein S3 [Thermobifida fusca YX]
 gi|91207846|sp|Q47LJ9|RS3_THEFY RecName: Full=30S ribosomal protein S3
 gi|71916771|gb|AAZ56673.1| SSU ribosomal protein S3P [Thermobifida fusca YX]
          Length = 270

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 146/202 (72%), Gaps = 1/202 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP  FRLGV   + SRWFA    Y   + ED+ IR+ L   +++AG++K+ IERT
Sbjct: 1   MGQKVNPHGFRLGVTTDFKSRWFA-DKLYKDYVKEDVAIRQMLTRGMERAGISKVEIERT 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  R+ V++ARPG++IG++G + ++IR  L  +TN ++ L++ EV  PEI+A L+AQ +
Sbjct: 60  RERVRVDVHTARPGIVIGRRGAEADRIRANLEKLTNKQVQLNILEVKNPEIDAQLVAQGV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QL  RV FRRAM++A+QSAM+ GA G++V  SGRL GAE+SR+E Y EGRVPL TLRA
Sbjct: 120 AEQLSSRVAFRRAMRKAIQSAMKSGAKGIRVQCSGRLGGAEMSRSEFYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            IDYG   A T +G  G+KV++
Sbjct: 180 DIDYGFFEARTTFGRIGVKVWI 201


>gi|210631088|ref|ZP_03296744.1| hypothetical protein COLSTE_00629 [Collinsella stercoris DSM 13279]
 gi|210160176|gb|EEA91147.1| hypothetical protein COLSTE_00629 [Collinsella stercoris DSM 13279]
          Length = 236

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 105/205 (51%), Positives = 146/205 (71%), Gaps = 4/205 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+ P  FRLG+   W SRWFA   +Y   L  D++IR +L+  L +A V+++ IER 
Sbjct: 1   MGQKVYPTGFRLGITENWRSRWFAE-KDYAKTLGNDIEIRRFLEKRLARAAVSRVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKL---SNMTNSEIHLSVNEVPKPEINATLIA 117
               ++I+ +ARPG++IGKKG++I+ +R +L   + +T   + + V EV +PE++A L+A
Sbjct: 60  GDKVKVIILTARPGVVIGKKGSEIDGLRTELERVAGVTKGNLSVDVIEVKRPELDAVLVA 119

Query: 118 QSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQT 177
           QSIA+QLE RV FRRAM++AVQSA + GA G+++  SGRL GAE+ R E Y EGRVPL T
Sbjct: 120 QSIAEQLEGRVAFRRAMRKAVQSARKAGAKGIRIQCSGRLGGAEMGRREWYREGRVPLHT 179

Query: 178 LRAHIDYGTAVAETAYGSCGIKVYV 202
           LRA IDYGTA A T  GSCG+KV++
Sbjct: 180 LRAKIDYGTATAHTTMGSCGVKVWI 204


>gi|148273795|ref|YP_001223356.1| 30S ribosomal protein S3 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|170780739|ref|YP_001709071.1| 30S ribosomal protein S3 [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|189044966|sp|A5CUA7|RS3_CLAM3 RecName: Full=30S ribosomal protein S3
 gi|189044967|sp|B0RB45|RS3_CLAMS RecName: Full=30S ribosomal protein S3
 gi|147831725|emb|CAN02694.1| 30S ribosomal protein S3 [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|169155307|emb|CAQ00410.1| 30S ribosomal protein S3 [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 265

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 106/216 (49%), Positives = 148/216 (68%), Gaps = 5/216 (2%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFA----RGSEYGALLHEDLKIREYLQCHLKQAGVAKIL 56
           MGQK+NP  FRLG+     SRWF+    +G  Y   + ED++IR  L+  L +AGVA+I 
Sbjct: 1   MGQKVNPYGFRLGITTDHVSRWFSDSTKKGQRYSDYVAEDVRIRTMLKTSLDRAGVARIE 60

Query: 57  IERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLI 116
           IERT    R+ +Y+ARPG++IG++G + E+IR  L  +T  +I L++ EV  PE  A L+
Sbjct: 61  IERTRDRVRVDIYTARPGIVIGRRGVEAERIRADLEKLTGKQIQLNILEVKNPEAEAQLV 120

Query: 117 AQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQ 176
           AQ IA+QL  RV FRRAM++ +Q A R GA GV++  SGRL GAE+SR+E Y EGRVPL 
Sbjct: 121 AQGIAEQLAGRVAFRRAMRKGLQGAQRAGAKGVRIQVSGRLGGAEMSRSEFYREGRVPLH 180

Query: 177 TLRAHIDYGTAVAETAYGSCGIKVYVSLRDEVSDSD 212
           TLRA+IDYG   A T++G  G+KV+V  + ++++ D
Sbjct: 181 TLRANIDYGFYEARTSFGRIGVKVWV-YKGDITNKD 215


>gi|269958590|ref|YP_003328377.1| 30S ribosomal protein S3 [Anaplasma centrale str. Israel]
 gi|269848419|gb|ACZ49063.1| 30S ribosomal protein S3 [Anaplasma centrale str. Israel]
          Length = 211

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 106/206 (51%), Positives = 148/206 (71%), Gaps = 1/206 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK NPI  RL +  TW+S W+A G  Y + LHEDL +R +++     A V++++I R 
Sbjct: 1   MGQKSNPIGLRLRIVGTWDSLWYANGG-YASKLHEDLLLRSFVKKTFHHAAVSRVVIARK 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + ++SARPG+IIGKKGTDI++++++++ M N ++ L + EV KP++ A LIA++I
Sbjct: 60  VDAVIVNIHSARPGVIIGKKGTDIDRVKQRIAKMVNHDVELHIVEVKKPDLKAALIAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLE+RV FRRAMKR VQ+ ++ GA GVKV  SGRL GAE++RTE Y EG VPL T RA
Sbjct: 120 AQQLEKRVSFRRAMKRGVQNCLKLGARGVKVSCSGRLGGAEIARTEWYKEGSVPLHTFRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRD 206
           +IDY  A A+T YG  G+KV+V + D
Sbjct: 180 NIDYSCAEAKTIYGIVGVKVWVHVGD 205


>gi|229815769|ref|ZP_04446094.1| hypothetical protein COLINT_02818 [Collinsella intestinalis DSM
           13280]
 gi|229808685|gb|EEP44462.1| hypothetical protein COLINT_02818 [Collinsella intestinalis DSM
           13280]
          Length = 236

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 104/205 (50%), Positives = 147/205 (71%), Gaps = 4/205 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+ P  FRLG+   W SRWFA   +Y   L  D++IR +L+  L +A V+++ IER 
Sbjct: 1   MGQKVYPTGFRLGITENWRSRWFAE-KDYAKTLGNDIEIRRFLEKRLARAAVSRVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIR---KKLSNMTNSEIHLSVNEVPKPEINATLIA 117
               ++I+ +ARPG++IGKKG++I+ +R   +K++ ++   + + V EV +PE++A L+A
Sbjct: 60  GDKVKVIILTARPGVVIGKKGSEIDGLRTELEKVAGVSKGNLSVDVIEVKRPELDAVLVA 119

Query: 118 QSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQT 177
           QSIA+QLE RV FRRAM++AVQSA + GA G+++  SGRL GAE+ R E Y EGRVPL T
Sbjct: 120 QSIAEQLEGRVAFRRAMRKAVQSARKAGAKGIRIQCSGRLGGAEMGRREWYREGRVPLHT 179

Query: 178 LRAHIDYGTAVAETAYGSCGIKVYV 202
           LRA IDYGTA A T  GSCG+KV++
Sbjct: 180 LRAKIDYGTATARTTMGSCGVKVWI 204


>gi|329942417|ref|ZP_08291227.1| ribosomal protein S3 [Chlamydophila psittaci Cal10]
 gi|313847654|emb|CBY16642.1| 30S ribosomal protein s3 [Chlamydophila psittaci RD1]
 gi|325507321|gb|ADZ18959.1| 30S ribosomal protein S3 [Chlamydophila psittaci 6BC]
 gi|328815327|gb|EGF85315.1| ribosomal protein S3 [Chlamydophila psittaci Cal10]
 gi|328914291|gb|AEB55124.1| ribosomal protein S3 [Chlamydophila psittaci 6BC]
          Length = 223

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 105/218 (48%), Positives = 148/218 (67%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK  PI FR GV   W S W+    E+G  L ED+KIRE+L+      G A  ++ R 
Sbjct: 1   MGQKGCPIGFRTGVTKKWRSLWYGNKQEFGKFLIEDVKIREFLRKKPSCQGAAGFVVRRM 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + + +ARPGL+IGKKG +++ ++++L  +T  E+ + + E+ +PE+NA L+A +I
Sbjct: 61  SGKIEVTIQTARPGLVIGKKGAEVDLLKEELRKLTGKEVWVEIAEIKRPELNAKLVADNI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+Q+ERRV FRRAMK+A+QS M  GA GVK+  SGRL GAE++R+E Y  GRVPL TLRA
Sbjct: 121 AKQIERRVSFRRAMKKAMQSVMDAGAVGVKIQVSGRLAGAEIARSEWYKNGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAA 218
            IDY TA A T YG  G+KV+++L ++VS + S + AA
Sbjct: 181 DIDYATASAATTYGIIGVKVWINLGEKVSTASSNVGAA 218


>gi|206901441|ref|YP_002250707.1| ribosomal protein S3 [Dictyoglomus thermophilum H-6-12]
 gi|226697700|sp|B5YDU9|RS3_DICT6 RecName: Full=30S ribosomal protein S3
 gi|206740544|gb|ACI19602.1| ribosomal protein S3 [Dictyoglomus thermophilum H-6-12]
          Length = 245

 Score =  219 bits (557), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/203 (50%), Positives = 147/203 (72%), Gaps = 1/203 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK +P  FRLG+   W S W+A  S+Y +LLHED  IR YL+ +  QAG++ I IER 
Sbjct: 1   MGQKTHPYGFRLGITKDWKSHWYAERSDYSSLLHEDWAIRNYLKKNYYQAGISLIEIERK 60

Query: 61  HKN-CRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQS 119
             N   I +++ARPG++IG+ G++IE IRK L  +TN  + ++V EV  PE++A L+A++
Sbjct: 61  AANRVDITIHTARPGMLIGRGGSEIENIRKNLIKLTNKNVFVNVQEVKNPELDAQLVAEN 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IA Q+E+R+ ++RAMK+A+  A+R GA G+KV+ SGRLNGAE++R+E + EGR+PLQTL 
Sbjct: 121 IAMQIEKRINYKRAMKQAINRALRAGAKGIKVMCSGRLNGAEIARSEWFREGRIPLQTLT 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYV 202
           A IDYG A A T  G  G+KV++
Sbjct: 181 ADIDYGFAEAFTISGVIGVKVWI 203


>gi|224373643|ref|YP_002608015.1| 30S ribosomal protein S3 [Nautilia profundicola AmH]
 gi|254764538|sp|B9L6M7|RS3_NAUPA RecName: Full=30S ribosomal protein S3
 gi|223589411|gb|ACM93147.1| ribosomal protein S3 [Nautilia profundicola AmH]
          Length = 240

 Score =  218 bits (556), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 107/221 (48%), Positives = 155/221 (70%), Gaps = 5/221 (2%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK NPI  RLG+N  W SRWF   +     +  D ++R++L+  L  AG++ I+IERT
Sbjct: 1   MGQKTNPIGLRLGINKNWRSRWFINYNTMPENVLGDYELRKFLKKKLYYAGISDIIIERT 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSN-MTNSEIHLSVNEVPKPEINATLIAQS 119
            K  RI +++A+PG+IIGK G++IE ++ +L   + N E+ L++ E  KP+++A L A++
Sbjct: 61  AKKIRITIFAAKPGIIIGKGGSEIEALKAELQKRIGNKELILNIKEERKPQLSAQLAAEN 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           +A Q+ERRV FRRAMK+ +QSA++ GA G+KV  +GRLNGAE++RTE YLEGRVPL TLR
Sbjct: 121 VATQIERRVAFRRAMKKVIQSALKSGAKGIKVQVAGRLNGAEMARTEWYLEGRVPLHTLR 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYV----SLRDEVSDSDSTIP 216
           A IDYG A A T YG  G+KV++     L+ +++  D+  P
Sbjct: 181 AKIDYGFAEALTTYGIIGVKVWIFKGEVLQRKMNSDDTATP 221


>gi|147676661|ref|YP_001210876.1| 30S ribosomal protein S3 [Pelotomaculum thermopropionicum SI]
 gi|189045026|sp|A5D5G1|RS3_PELTS RecName: Full=30S ribosomal protein S3
 gi|146272758|dbj|BAF58507.1| ribosomal protein S3 [Pelotomaculum thermopropionicum SI]
          Length = 231

 Score =  218 bits (556), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 101/217 (46%), Positives = 152/217 (70%), Gaps = 2/217 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   R+G+   W  +W+A    Y ALLHED+KIR++++  L  AG+++I IER 
Sbjct: 1   MGQKVNPKGLRIGIIRDWEGKWYADKRNYAALLHEDIKIRKFIKEKLFAAGISRIQIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               ++ +++A+PG++IG+ G ++E +RK+L N+T  ++ +++ E+  PE++A L+A+++
Sbjct: 61  ANRVKVSIHTAKPGIVIGRGGAEVENLRKQLENLTGKQVSVNIVEIKVPELDAQLVAENV 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE+R+ FRRAMK+ V  +M+ GA G+KV   GRL GAE++RTE Y EG+VPL TLRA
Sbjct: 121 AAQLEKRIAFRRAMKQVVSRSMKMGAKGIKVACGGRLAGAEIARTEWYSEGKVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPA 217
            IDYG A A T YG  G+KV++  R EV     T PA
Sbjct: 181 DIDYGFAEANTTYGKIGVKVWI-YRGEVLPEAKT-PA 215


>gi|259047549|ref|ZP_05737950.1| 30S ribosomal protein S3 [Granulicatella adiacens ATCC 49175]
 gi|259035740|gb|EEW36995.1| 30S ribosomal protein S3 [Granulicatella adiacens ATCC 49175]
          Length = 220

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 97/208 (46%), Positives = 149/208 (71%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKI+P+  R+G+   W+S+W+A   ++   LHEDLKIR+Y++  L +A V+ I IER 
Sbjct: 1   MGQKIHPLGMRVGIIRDWDSKWYAE-KDFAEFLHEDLKIRDYIRKQLNEASVSTIEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +++A+PG++IGK G++++K+R  L+ +T   +H+++ E+ KP+++A L+A+ I
Sbjct: 60  ANRVNVSIHTAKPGMVIGKGGSEVDKLRTNLNKLTGKRVHINIVEIKKPDLDAKLVAEGI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+ LERR+ FRRA K+A+Q  MR GA G+K + SGRLNGA+++R+E Y EG VPL TLRA
Sbjct: 120 ARDLERRIAFRRAQKQAIQRTMRAGAKGIKTMVSGRLNGADIARSESYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY    A+T YG  G+K ++  RDEV
Sbjct: 180 DIDYAWEEADTTYGKLGVKTWI-YRDEV 206


>gi|325282646|ref|YP_004255187.1| ribosomal protein S3 [Deinococcus proteolyticus MRP]
 gi|324314455|gb|ADY25570.1| ribosomal protein S3 [Deinococcus proteolyticus MRP]
          Length = 259

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 115/224 (51%), Positives = 144/224 (64%), Gaps = 7/224 (3%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG KINP  FRLGV   WNSRW+A    Y  +L ED KIR+ +   L+ AG+A+I IER 
Sbjct: 1   MGNKINPNGFRLGVTRGWNSRWYAGKKNYSQMLREDEKIRQLVHKELQAAGIARIEIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNS-EIHLSVNEVPKPEINATLIAQS 119
            +   +I+ +A+PG++IGK G  I+ IR+ + NM  +  + ++V E+P P  +A L+A  
Sbjct: 61  GQQINVIISAAKPGIVIGKGGESIKAIRQSIENMVEAGTVAVNVAEIPNPNTSAPLVALR 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IA+Q+ERR  FRRAMK+A Q  M  GA G KVI SGRL GAE +RTE  LEGRVPL TLR
Sbjct: 121 IAEQIERRFAFRRAMKQAAQRVMESGARGCKVILSGRLGGAEQARTEKVLEGRVPLHTLR 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYV------SLRDEVSDSDSTIPA 217
           A IDYGTA A T YG  GIKV V        R E + S S  PA
Sbjct: 181 ADIDYGTATASTTYGQLGIKVLVFNGEVIGGRTEGTQSRSARPA 224


>gi|322380622|ref|ZP_08054774.1| 30S ribosomal protein S3 [Helicobacter suis HS5]
 gi|321146944|gb|EFX41692.1| 30S ribosomal protein S3 [Helicobacter suis HS5]
          Length = 221

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 104/193 (53%), Positives = 140/193 (72%)

Query: 10  FRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTHKNCRIIVY 69
            RLG+N  W SRWF       A + ED +IR++L+  L  AGV++ILIER  K  R+ V 
Sbjct: 1   MRLGINRNWTSRWFPSSGVAVANIEEDYRIRKFLKKELYYAGVSEILIERAAKKLRVTVV 60

Query: 70  SARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSIAQQLERRVV 129
           +ARPGLIIGKKG DIEK++  L ++   E+ L++ EV +P+ +A L A+++A QLE+RV 
Sbjct: 61  AARPGLIIGKKGVDIEKVKTSLKDLIRKEVALNIKEVKRPQADAQLAAENVATQLEKRVA 120

Query: 130 FRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRAHIDYGTAVA 189
           FRRAMK+ +Q+AM+ GA G+KV  SGRL GAE++RTE Y+EGRVPL TLRA IDYG A A
Sbjct: 121 FRRAMKKVMQTAMKAGARGIKVRVSGRLAGAEIARTEWYMEGRVPLHTLRAKIDYGFAEA 180

Query: 190 ETAYGSCGIKVYV 202
            T YG+ G+KV++
Sbjct: 181 FTVYGNIGVKVWL 193


>gi|237804873|ref|YP_002889027.1| 30S ribosomal protein S3 [Chlamydia trachomatis B/TZ1A828/OT]
 gi|255311340|ref|ZP_05353910.1| 30S ribosomal protein S3 [Chlamydia trachomatis 6276]
 gi|255317641|ref|ZP_05358887.1| 30S ribosomal protein S3 [Chlamydia trachomatis 6276s]
 gi|231273173|emb|CAX10086.1| SSU ribosomal protein S3P [Chlamydia trachomatis B/TZ1A828/OT]
 gi|296436055|gb|ADH18229.1| 30S ribosomal protein S3 [Chlamydia trachomatis G/9768]
 gi|296436983|gb|ADH19153.1| 30S ribosomal protein S3 [Chlamydia trachomatis G/11222]
 gi|296437916|gb|ADH20077.1| 30S ribosomal protein S3 [Chlamydia trachomatis G/11074]
 gi|297140416|gb|ADH97174.1| 30S ribosomal protein S3 [Chlamydia trachomatis G/9301]
          Length = 224

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 107/220 (48%), Positives = 146/220 (66%), Gaps = 5/220 (2%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK  PI FR  V   W S W+    E+G  L ED+KIRE+L+      G A  +++R 
Sbjct: 1   MGQKGCPIGFRTAVTKKWRSLWYGNNQEFGKFLIEDVKIREFLKKKPSCQGAAGFVVKRM 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +++ARPGL+IGKKG ++E ++ +L  +T  ++ + + EV +PE+NA L+A  I
Sbjct: 61  SGKIEVTIHTARPGLVIGKKGAEVESLKAELKKLTGKDVWVEIAEVKRPELNAQLVADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+Q+ERRV FRRAMK+A+QS M  GA GVKV  SGRL GAE++R+E Y  GRVPL TLRA
Sbjct: 121 AKQIERRVSFRRAMKKALQSVMDAGALGVKVQVSGRLAGAEIARSEWYKNGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEH 220
            IDY TA AET YG  GIKV+++L ++       +PAA H
Sbjct: 181 DIDYATASAETTYGIIGIKVWINLGEK-----KAVPAANH 215


>gi|154684640|ref|YP_001419801.1| 30S ribosomal protein S3 [Bacillus amyloliquefaciens FZB42]
 gi|308172013|ref|YP_003918718.1| 30S ribosomal protein S3 (BS3) [Bacillus amyloliquefaciens DSM 7]
 gi|171854993|sp|A7Z0P4|RS3_BACA2 RecName: Full=30S ribosomal protein S3
 gi|154350491|gb|ABS72570.1| RpsC [Bacillus amyloliquefaciens FZB42]
 gi|307604877|emb|CBI41248.1| ribosomal protein S3 (BS3) [Bacillus amyloliquefaciens DSM 7]
 gi|328551823|gb|AEB22315.1| 30S ribosomal protein S3 [Bacillus amyloliquefaciens TA208]
 gi|328910082|gb|AEB61678.1| 30S ribosomal protein S3 [Bacillus amyloliquefaciens LL3]
          Length = 218

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 100/208 (48%), Positives = 148/208 (71%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+GV   W S+W+A G +Y   LHEDLKIRE++   L  A V+K+ IER 
Sbjct: 1   MGQKVNPVGLRIGVIRDWESKWYA-GKDYADFLHEDLKIREFISKRLSDASVSKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++A+PG++IGK G+++E +RK L+++T   +H+++ E+ + +++A L+A +I
Sbjct: 60  ANRVNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINILEIKRADLDAQLVADNI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE R+ FRRA K+ +Q  MR GA GVK + SGRL GA+++R+E Y EG VPL TLRA
Sbjct: 120 ARQLENRISFRRAQKQQIQRTMRAGAQGVKTMVSGRLGGADIARSEYYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T+ A+T YG  G+KV++  R EV
Sbjct: 180 DIDYATSEADTTYGKLGVKVWI-YRGEV 206


>gi|326332197|ref|ZP_08198477.1| ribosomal protein S3 [Nocardioidaceae bacterium Broad-1]
 gi|325949903|gb|EGD41963.1| ribosomal protein S3 [Nocardioidaceae bacterium Broad-1]
          Length = 275

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 104/211 (49%), Positives = 152/211 (72%), Gaps = 2/211 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRLG++    SRW+A   +Y   + ED+KIR+ L   +++AG+AK+ IERT
Sbjct: 1   MGQKINPNGFRLGISTDHKSRWYA-DKQYKEYVGEDVKIRKLLSKGMERAGIAKVEIERT 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+ +++ARPG++IG++G + +++R +L  +T  ++ L++ EV  PE++A L+AQ +
Sbjct: 60  RDRVRVDIHTARPGIVIGRRGAEADRLRTELEKLTGKQVQLNILEVKNPEVDAQLVAQGV 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QL  RV FRRAM++A+Q+ MR GA G+++  SGRLNGAE+SRTE Y EGRVPL TLRA
Sbjct: 120 AEQLSGRVQFRRAMRKAMQTTMRSGAKGIRIQCSGRLNGAEMSRTEFYREGRVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDS 211
            IDYG   A T +G  G+KV++  + EVS S
Sbjct: 180 DIDYGFYEARTTFGRIGVKVWI-YKGEVSGS 209


>gi|320160420|ref|YP_004173644.1| 30S ribosomal protein S3 [Anaerolinea thermophila UNI-1]
 gi|319994273|dbj|BAJ63044.1| 30S ribosomal protein S3 [Anaerolinea thermophila UNI-1]
          Length = 225

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 145/202 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MG+K+NP+ FRL VN  W SRWFA G EY   L +D +IR+ ++   + AGV+++ +ER 
Sbjct: 1   MGRKVNPVGFRLVVNKAWESRWFADGKEYTQNLQQDFQIRKLVREIAENAGVSRVEVERF 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               R+IV++A+PG++IG+KG  ++K+R+ L  +T  +I L + E+  P+ +A L+A+++
Sbjct: 61  PGKVRVIVFTAKPGILIGRKGESVKKLRQDLEALTGKKIDLEIKEIKNPDTDALLVAENL 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A Q+ERRV +RRAMKRA+Q AMR GA G+KV   GRL+GAE+SR+    EGRVPLQTLRA
Sbjct: 121 ASQIERRVSYRRAMKRALQQAMRQGAKGIKVEVQGRLSGAEMSRSVWLREGRVPLQTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYV 202
            ID+  A A T YG  G+KV+V
Sbjct: 181 DIDFARAEALTTYGRIGVKVWV 202


>gi|326773969|ref|ZP_08233251.1| ribosomal protein S3 [Actinomyces viscosus C505]
 gi|326636108|gb|EGE37012.1| ribosomal protein S3 [Actinomyces viscosus C505]
          Length = 273

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 100/206 (48%), Positives = 147/206 (71%), Gaps = 4/206 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFAR----GSEYGALLHEDLKIREYLQCHLKQAGVAKIL 56
           MGQK+NP  FRLG+     SRWFA     G  Y   + ED+KIR  ++  +++AG++K+ 
Sbjct: 1   MGQKVNPTGFRLGITTDHRSRWFADSTKPGQRYRDFVEEDVKIRRLMEDGMERAGISKVD 60

Query: 57  IERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLI 116
           IERT    R+ +++ARPG++IG++G + E++R +L  +T  ++ L++ EV  P+++A L+
Sbjct: 61  IERTRDRVRVDLHTARPGIVIGRRGAEAERLRGQLEKLTGKQVQLNILEVKSPDLDAQLV 120

Query: 117 AQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQ 176
           AQ IA+QL  RV FRRAM++ +QSAMR GA G++V  SGRL GAE+SR+E Y EGRVPL 
Sbjct: 121 AQGIAEQLASRVSFRRAMRKGMQSAMRAGAKGIRVQCSGRLGGAEMSRSEFYREGRVPLH 180

Query: 177 TLRAHIDYGTAVAETAYGSCGIKVYV 202
           TLRA+IDYG   A+T +G  G+KV++
Sbjct: 181 TLRANIDYGFYEAKTTFGRLGVKVWI 206


>gi|227879249|ref|ZP_03997119.1| 30S ribosomal protein S3 [Lactobacillus crispatus JV-V01]
 gi|256844435|ref|ZP_05549921.1| 30S ribosomal protein S3 [Lactobacillus crispatus 125-2-CHN]
 gi|256849177|ref|ZP_05554610.1| 30S ribosomal protein S3 [Lactobacillus crispatus MV-1A-US]
 gi|262047193|ref|ZP_06020151.1| 30S ribosomal protein S3 [Lactobacillus crispatus MV-3A-US]
 gi|227861143|gb|EEJ68792.1| 30S ribosomal protein S3 [Lactobacillus crispatus JV-V01]
 gi|256613513|gb|EEU18716.1| 30S ribosomal protein S3 [Lactobacillus crispatus 125-2-CHN]
 gi|256713953|gb|EEU28941.1| 30S ribosomal protein S3 [Lactobacillus crispatus MV-1A-US]
 gi|260572438|gb|EEX29000.1| 30S ribosomal protein S3 [Lactobacillus crispatus MV-3A-US]
          Length = 224

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 105/219 (47%), Positives = 155/219 (70%), Gaps = 2/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRLGV   W S+W+A    Y   L+EDL+IR+++   LK A V+ + IER 
Sbjct: 1   MGQKINPNGFRLGVIRDWESKWYA-DKGYKETLNEDLQIRKFISEKLKDASVSTVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++A+PG++IGK G+++E +RK+L+ +T  ++H+++ E+ KP+++A L+A SI
Sbjct: 60  ANRINISIHTAKPGMVIGKGGSEVEALRKQLNALTGKQVHINIVEIKKPDLDAKLVADSI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE R+ FRRAM++A Q AMR GA G+KV  SGRLNGA+++R E + EGRVPLQTLRA
Sbjct: 120 ARQLEARIAFRRAMRQATQRAMRAGAKGIKVQTSGRLNGADMARREWHTEGRVPLQTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDY    A T YG  G++V+++ R E+  +    PA++
Sbjct: 180 DIDYAWVNAFTTYGEIGVQVWIN-RGEILPTRKNKPASK 217


>gi|323141362|ref|ZP_08076253.1| ribosomal protein S3 [Phascolarctobacterium sp. YIT 12067]
 gi|322414111|gb|EFY04939.1| ribosomal protein S3 [Phascolarctobacterium sp. YIT 12067]
          Length = 222

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 105/222 (47%), Positives = 153/222 (68%), Gaps = 4/222 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   R+GV   W+S+W+A G +Y   L ED+KIRE+++  L  +G++K+ IER 
Sbjct: 1   MGQKVNPHGLRVGVIKGWDSKWYA-GKDYEKFLLEDIKIREFIKEKLFLSGISKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
               RI +++A+PG++IG++G++IE ++  L  MT S I +++ EV  P+++ATL+A++I
Sbjct: 60  SNKARISIHTAKPGMVIGRQGSNIELLKSDLKKMTESAIEINIVEVKTPDMDATLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK+ V   MR GA G+K+   GRL GAE++R+E Y EG +PL TLRA
Sbjct: 120 AAQLERRIAFRRAMKQCVGRTMRMGAKGIKITCGGRLGGAEIARSESYREGSIPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYV---SLRDEVSDSDSTIPAAE 219
            IDYGTA A T YG  GIKV++    +  E  ++    PA E
Sbjct: 180 DIDYGTAEAHTTYGRIGIKVWIYKGEVLPESKEAAKVAPAKE 221


>gi|196228462|ref|ZP_03127329.1| ribosomal protein S3 [Chthoniobacter flavus Ellin428]
 gi|196227865|gb|EDY22368.1| ribosomal protein S3 [Chthoniobacter flavus Ellin428]
          Length = 251

 Score =  218 bits (556), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 98/203 (48%), Positives = 146/203 (71%), Gaps = 1/203 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NPI +RL VN  W SRW+A   E    L+ DLKIR Y++  L+ A V+KI+IER 
Sbjct: 1   MGQKVNPIGYRLAVNRDWRSRWYASPKELPDFLNSDLKIRRYVKDKLRLAAVSKIVIERA 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSE-IHLSVNEVPKPEINATLIAQS 119
             + R+ +++ARPG++IG+KGT+IE + K++  ++N + + + + E+  PE++A L+A++
Sbjct: 61  WNSIRVTIFTARPGIVIGRKGTEIENMTKEIERLSNGKSVKIDIQEIKTPELDAQLVAEN 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           +A Q+ERR+ FRRAMK+++Q  M FGA G+K+  +GRL GAE+SR E Y EG++PL TLR
Sbjct: 121 VALQIERRISFRRAMKKSIQQTMEFGAQGIKLRCAGRLGGAEISRAEWYREGKIPLHTLR 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYV 202
             IDYG A A T YG  G+K ++
Sbjct: 181 QPIDYGFAEANTVYGKIGVKCWL 203


>gi|227497187|ref|ZP_03927435.1| possible ribosomal protein S3 [Actinomyces urogenitalis DSM 15434]
 gi|226833318|gb|EEH65701.1| possible ribosomal protein S3 [Actinomyces urogenitalis DSM 15434]
          Length = 269

 Score =  218 bits (555), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 100/206 (48%), Positives = 147/206 (71%), Gaps = 4/206 (1%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFAR----GSEYGALLHEDLKIREYLQCHLKQAGVAKIL 56
           MGQK+NP  FRLG+     SRWFA     G  Y   + ED+KIR  ++  +++AG++K+ 
Sbjct: 1   MGQKVNPTGFRLGITTDHRSRWFADSTKPGQRYRDFVEEDVKIRRLMEDGMERAGISKVD 60

Query: 57  IERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLI 116
           IERT    R+ +++ARPG++IG++G + E++R +L  +T  ++ L++ EV  P+++A L+
Sbjct: 61  IERTRDRVRVDLHTARPGIVIGRRGAEAERLRGQLEKLTGKQVQLNILEVKSPDLDAQLV 120

Query: 117 AQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQ 176
           AQ IA+QL  RV FRRAM++ +QSAMR GA G++V  SGRL GAE+SR+E Y EGRVPL 
Sbjct: 121 AQGIAEQLASRVSFRRAMRKGMQSAMRAGAKGIRVQCSGRLGGAEMSRSEFYREGRVPLH 180

Query: 177 TLRAHIDYGTAVAETAYGSCGIKVYV 202
           TLRA+IDYG   A+T +G  G+KV++
Sbjct: 181 TLRANIDYGFYEAKTTFGRLGVKVWI 206


>gi|52078615|ref|YP_077406.1| 30S ribosomal protein S3 [Bacillus licheniformis ATCC 14580]
 gi|52783977|ref|YP_089806.1| 30S ribosomal protein S3 [Bacillus licheniformis ATCC 14580]
 gi|319649110|ref|ZP_08003318.1| 30S ribosomal protein S3 [Bacillus sp. BT1B_CT2]
 gi|81691248|sp|Q65PA1|RS3_BACLD RecName: Full=30S ribosomal protein S3
 gi|52001826|gb|AAU21768.1| ribosomal protein S3 (BS3) [Bacillus licheniformis ATCC 14580]
 gi|52346479|gb|AAU39113.1| RpsC [Bacillus licheniformis ATCC 14580]
 gi|317388810|gb|EFV69629.1| 30S ribosomal protein S3 [Bacillus sp. BT1B_CT2]
          Length = 218

 Score =  218 bits (555), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 99/208 (47%), Positives = 148/208 (71%), Gaps = 2/208 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP+  R+GV   W S+W+A G +Y   LHEDLKIRE++   L  A V+K+ IER 
Sbjct: 1   MGQKVNPVGLRIGVIRDWESKWYA-GKDYADFLHEDLKIREFINQRLSDASVSKVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++A+PG++IGK G+++E +RK L+++T   +H+++ E+ + +++A L+A +I
Sbjct: 60  ANRVNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINILEIKRADLDAQLVADNI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE R+ FRRA K+ +Q  MR GA G+K + SGRL GA+++R+E Y EG VPL TLRA
Sbjct: 120 ARQLENRISFRRAQKQQIQRTMRAGAQGIKTMVSGRLGGADIARSEYYSEGTVPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEV 208
            IDY T+ A+T YG  G+KV++  R EV
Sbjct: 180 DIDYATSEADTTYGKLGVKVWI-YRGEV 206


>gi|169335635|ref|ZP_02862828.1| hypothetical protein ANASTE_02055 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258373|gb|EDS72339.1| hypothetical protein ANASTE_02055 [Anaerofustis stercorihominis DSM
           17244]
          Length = 213

 Score =  218 bits (555), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 100/203 (49%), Positives = 146/203 (71%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   R+GV   W+SRW+A+  ++G  L ED  IR+Y++      G+++I IER 
Sbjct: 1   MGQKVNPHGLRVGVIKDWSSRWYAKDKDFGDTLVEDYNIRKYIKTTQYNTGISRIEIERF 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
            +  +I +Y+ +PG IIGK G+ IE +RK+L  MT   +++++ EV   + +A L+A++I
Sbjct: 61  GEKIKIFIYTGKPGKIIGKAGSGIEAVRKQLQKMTGKNVYINIIEVKNVDCDAQLVAENI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           AQQLERR+ FRRAMK+A+  A+R GA+G+K   SGR+NGAE++RTE Y +G VPLQTLRA
Sbjct: 121 AQQLERRISFRRAMKQAIGRALRGGAEGIKTSVSGRVNGAEMARTEQYSDGNVPLQTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVS 203
            IDYG A A+T YG  G+KV+++
Sbjct: 181 DIDYGFAEADTTYGKIGVKVWIN 203


>gi|217967375|ref|YP_002352881.1| ribosomal protein S3 [Dictyoglomus turgidum DSM 6724]
 gi|226697701|sp|B8E1D9|RS3_DICTD RecName: Full=30S ribosomal protein S3
 gi|217336474|gb|ACK42267.1| ribosomal protein S3 [Dictyoglomus turgidum DSM 6724]
          Length = 245

 Score =  218 bits (555), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 103/203 (50%), Positives = 147/203 (72%), Gaps = 1/203 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK +P  FRLG+   W S W+A  S+Y +LLHED  IR Y++ +  QAG++ I IER 
Sbjct: 1   MGQKTHPYGFRLGITKDWKSHWYAERSDYSSLLHEDWAIRNYIKKNYYQAGISLIEIERK 60

Query: 61  HKN-CRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQS 119
             N   I +++ARPG++IG+ G++IE IRK L  +TN  + ++V EV  PE++A L+A++
Sbjct: 61  AANRVDITIHTARPGMLIGRGGSEIENIRKNLVKLTNKSVFVNVQEVKNPELDAQLVAEN 120

Query: 120 IAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLR 179
           IA Q+E+R+ ++RAMK+A+  A+R GA GVKV+ SGRLNGAE++R+E + EGR+PLQTL 
Sbjct: 121 IATQIEKRINYKRAMKQAINRALRAGAKGVKVMCSGRLNGAEIARSEWFREGRIPLQTLT 180

Query: 180 AHIDYGTAVAETAYGSCGIKVYV 202
           A IDYG A A T  G  G+KV++
Sbjct: 181 ADIDYGFAEAFTISGVIGVKVWI 203


>gi|269798544|ref|YP_003312444.1| ribosomal protein S3 [Veillonella parvula DSM 2008]
 gi|282849870|ref|ZP_06259253.1| ribosomal protein S3 [Veillonella parvula ATCC 17745]
 gi|294792800|ref|ZP_06757947.1| ribosomal protein S3 [Veillonella sp. 6_1_27]
 gi|294794554|ref|ZP_06759690.1| ribosomal protein S3 [Veillonella sp. 3_1_44]
 gi|269095173|gb|ACZ25164.1| ribosomal protein S3 [Veillonella parvula DSM 2008]
 gi|282580307|gb|EFB85707.1| ribosomal protein S3 [Veillonella parvula ATCC 17745]
 gi|294454884|gb|EFG23257.1| ribosomal protein S3 [Veillonella sp. 3_1_44]
 gi|294456699|gb|EFG25062.1| ribosomal protein S3 [Veillonella sp. 6_1_27]
          Length = 222

 Score =  218 bits (555), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 102/217 (47%), Positives = 156/217 (71%), Gaps = 2/217 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK+NP   R+G+   W+++W+A   ++ A LHED+KIR +L+  L  AG+++I IERT
Sbjct: 1   MGQKVNPHGLRVGIVKDWDAKWYAD-KDFAANLHEDVKIRNFLKETLFIAGISRIEIERT 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
           +K  ++ +++A+PG++IG+ G  IE I+K ++  T+ ++ +++ E+ + +++ATL+A++I
Sbjct: 60  NKRIKLTIHTAKPGMVIGRGGAGIEDIKKAMTRFTDKQVDVNIAEIKQADMDATLVAENI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLERR+ FRRAMK+AV   MR GA G+K++ SGRL GAE++R+E Y EG +PL TLRA
Sbjct: 120 AGQLERRIGFRRAMKQAVGRTMRLGAKGIKIMVSGRLGGAEIARSESYREGSIPLHTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPA 217
            IDYGTA A T YG  GIKV++  + EV       PA
Sbjct: 180 DIDYGTAEAHTTYGCIGIKVWI-YKGEVLPEAKQAPA 215


>gi|295692166|ref|YP_003600776.1| 30S ribosomal protein s3 [Lactobacillus crispatus ST1]
 gi|295030272|emb|CBL49751.1| 30S ribosomal protein S3 [Lactobacillus crispatus ST1]
          Length = 224

 Score =  218 bits (555), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 105/219 (47%), Positives = 155/219 (70%), Gaps = 2/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRLGV   W S+W+A    Y   L+EDL+IR+++   LK A V+ + IER 
Sbjct: 1   MGQKINPNGFRLGVIRDWESKWYA-DKGYKETLNEDLQIRKFISEKLKDASVSTVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++A+PG++IGK G+++E +RK+L+ +T  ++H+++ E+ KP+++A L+A SI
Sbjct: 60  ANRINISIHTAKPGMVIGKGGSEVEALRKQLNALTGKQVHINIVEIKKPDLDAKLVADSI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+QLE R+ FRRAM++A Q AMR GA G+KV  SGRLNGA+++R E + EGRVPLQTLRA
Sbjct: 120 ARQLEARIAFRRAMRQATQRAMRAGAKGIKVQTSGRLNGADMARREWHTEGRVPLQTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDY    A T YG  G++V+++ R E+  +    PA++
Sbjct: 180 DIDYAWVNAFTTYGEIGVQVWIN-RGEILPTRKDKPASK 217


>gi|293380383|ref|ZP_06626454.1| 30S ribosomal protein S3 [Lactobacillus crispatus 214-1]
 gi|290923066|gb|EFD99997.1| 30S ribosomal protein S3 [Lactobacillus crispatus 214-1]
          Length = 224

 Score =  218 bits (555), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 105/219 (47%), Positives = 154/219 (70%), Gaps = 2/219 (0%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQKINP  FRLGV   W S+W+A    Y   L+EDL+IR+++   LK A V+ + IER 
Sbjct: 1   MGQKINPNGFRLGVIRDWESKWYA-DKGYKETLNEDLQIRKFISEKLKDASVSTVEIERA 59

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                I +++A+PG++IGK G+++E +RK+L+ +T  ++H+++ E+ KP+++A L+A SI
Sbjct: 60  ANRINISIHTAKPGMVIGKGGSEVEALRKQLNALTGKQVHINIVEIKKPDLDAKLVADSI 119

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A QLE R+ FRRAM++A Q AMR GA G+KV  SGRLNGA+++R E + EGRVPLQTLRA
Sbjct: 120 AHQLEARIAFRRAMRQATQRAMRAGAKGIKVQTSGRLNGADMARREWHTEGRVPLQTLRA 179

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAE 219
            IDY    A T YG  G++V+++ R E+  +    PA++
Sbjct: 180 DIDYAWVNAFTTYGEIGVQVWIN-RGEILPTRKNKPASK 217


>gi|237802951|ref|YP_002888145.1| 30S ribosomal protein S3 [Chlamydia trachomatis B/Jali20/OT]
 gi|231274185|emb|CAX10979.1| SSU ribosomal protein S3P [Chlamydia trachomatis B/Jali20/OT]
          Length = 224

 Score =  218 bits (555), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 106/220 (48%), Positives = 146/220 (66%), Gaps = 5/220 (2%)

Query: 1   MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
           MGQK  PI FR  +   W S W+    E+G  L ED+KIRE+L+      G A  +++R 
Sbjct: 1   MGQKGCPIGFRTAITKKWRSLWYGNNQEFGKFLVEDVKIREFLKKKPSCQGAAGFVVKRM 60

Query: 61  HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
                + +++ARPGL+IGKKG ++E ++ +L  +T  ++ + + EV +PE+NA L+A  I
Sbjct: 61  SGKIEVTIHTARPGLVIGKKGAEVESLKAELKKLTGKDVWVEIAEVKRPELNAQLVADGI 120

Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
           A+Q+ERRV FRRAMK+A+QS M  GA GVKV  SGRL GAE++R+E Y  GRVPL TLRA
Sbjct: 121 AKQIERRVSFRRAMKKALQSVMDAGALGVKVQVSGRLAGAEIARSEWYKNGRVPLHTLRA 180

Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSDSDSTIPAAEH 220
            IDY TA AET YG  GIKV+++L ++       +PAA H
Sbjct: 181 DIDYATASAETTYGIIGIKVWINLGEK-----KAVPAANH 215


>gi|227894526|ref|ZP_04012331.1| 30S ribosomal protein S3