PSIBLAST alignment of GI: 254780255 and protein with PDB id: 1vs5
gi|116666550|pdb|1VS5|C Chain C, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 233
>gi|116666602|pdb|1VS7|C Chain C, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 233
Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats.
Identities = 113/230 (49%), Positives = 157/230 (68%), Gaps = 4/230 (1%)
Query: 1 MGQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERT 60
MGQK++P RLG+ WNS WFA E+ L D K+R+YL L +A V++I+IER
Sbjct: 1 MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERP 60
Query: 61 HKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSI 120
K+ R+ +++ARPG++IGKKG D+EK+RK ++++ +++ EV KPE++A L+A SI
Sbjct: 61 AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEVRKPELDAKLVADSI 120
Query: 121 AQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTECYLEGRVPLQTLRA 180
QLERRV+FRRAMKRAVQ+AMR GA G+KV SGRL GAE++RTE Y EGRVPL TLRA
Sbjct: 121 TSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEWYREGRVPLHTLRA 180
Query: 181 HIDYGTAVAETAYGSCGIKVYVSLRDEVSD----SDSTIPAAEHRVVEKD 226
IDY T+ A T YG G+KV++ + + PAA+ + ++
Sbjct: 181 DIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAAVEQPEKPAAQPKKQQRK 230