RPSBLAST alignment for GI: 254780255 and conserved domain: cd02412

>gnl|CDD|48410 cd02412, 30S_S3_KH, K homology RNA-binding (KH) domain of the prokaryotic 30S small ribosomal subunit protein S3. S3 is part of the head region of the 30S ribosomal subunit and is believed to interact with mRNA as it threads its way from the latch into the channel. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.. Length = 109
 Score =  145 bits (367), Expect = 1e-35
 Identities = 52/109 (47%), Positives = 80/109 (73%), Gaps = 1/109 (0%)

Query: 2   GQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTH 61
           GQK+NP+ FRLG+   W+SRW+A   +Y  LLHEDLKIR++++  LK+AG+++I IER  
Sbjct: 1   GQKVNPLGFRLGITKDWDSRWYADKKDYAELLHEDLKIRKFIKKKLKKAGISRIEIERKA 60

Query: 62  KNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNS-EIHLSVNEVPKP 109
               + +++ARPG+IIGKKG  IEK+RK+L  +  + ++ +++ EV KP
Sbjct: 61  DRVEVTIHTARPGIIIGKKGAGIEKLRKELQKLLGNKKVRINIVEVKKP 109