RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780255|ref|YP_003064668.1| 30S ribosomal protein S3 [Candidatus Liberibacter asiaticus str. psy62] (227 letters) >d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain {Escherichia coli [TaxId: 562]} Length = 105 Score = 138 bits (348), Expect = 6e-34 Identities = 45/105 (42%), Positives = 71/105 (67%) Query: 2 GQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTH 61 GQK++P RLG+ WNS WFA E+ L D K+R+YL L +A V++I+IER Sbjct: 1 GQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKASVSRIVIERPA 60 Query: 62 KNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEV 106 K+ R+ +++ARPG++IGKKG D+EK+RK ++++ +++ EV Sbjct: 61 KSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQINIAEV 105 >d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 105 Score = 134 bits (339), Expect = 5e-33 Identities = 45/105 (42%), Positives = 67/105 (63%) Query: 2 GQKINPILFRLGVNCTWNSRWFARGSEYGALLHEDLKIREYLQCHLKQAGVAKILIERTH 61 G KI+PI FRLG+ W SRW+A +Y LL ED +IR L+ L AG+A++ IER Sbjct: 1 GNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAA 60 Query: 62 KNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEV 106 N + V+ A+PG++IG+ G I +R++L+ +T + L+V EV Sbjct: 61 DNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTGKNVALNVQEV 105 >d2qalc2 d.53.1.1 (C:106-206) Ribosomal protein S3 C-terminal domain {Escherichia coli [TaxId: 562]} Length = 101 Score = 131 bits (330), Expect = 7e-32 Identities = 65/101 (64%), Positives = 79/101 (78%), Gaps = 1/101 (0%) Query: 108 KPEINATLIAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTEC 167 KPE++A L+A SI QLERRV+FRRAMKRAVQ+AMR GA G+KV SGRL GAE++RTE Sbjct: 2 KPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARTEW 61 Query: 168 YLEGRVPLQTLRAHIDYGTAVAETAYGSCGIKVYVSLRDEV 208 Y EGRVPL TLRA IDY T+ A T YG G+KV++ + E+ Sbjct: 62 YREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWI-FKGEI 101 >d2uubc2 d.53.1.1 (C:107-207) Ribosomal protein S3 C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 101 Score = 125 bits (315), Expect = 3e-30 Identities = 56/101 (55%), Positives = 71/101 (70%), Gaps = 1/101 (0%) Query: 108 KPEINATLIAQSIAQQLERRVVFRRAMKRAVQSAMRFGADGVKVIASGRLNGAELSRTEC 167 P ++A L+AQ +A+Q+ERR RRA+K+AVQ M GA G KVI SGR+ GAE +RTE Sbjct: 2 NPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEW 61 Query: 168 YLEGRVPLQTLRAHIDYGTAVAETAYGSCGIKVYVSLRDEV 208 +GRVPL TLRA+IDYG A+A T YG G+K Y+ EV Sbjct: 62 AAQGRVPLHTLRANIDYGFALARTTYGVLGVKAYI-FLGEV 101 >d1wh9a_ d.52.3.1 (A:) Ribosomal protein S3 N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 92 Score = 73.2 bits (180), Expect = 2e-14 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 3/72 (4%) Query: 38 KIREYLQCHLKQAGVAKILIERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLS---NM 94 ++ E+L L + G + + + T II+ + R ++G+KG I ++ + Sbjct: 11 ELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGF 70 Query: 95 TNSEIHLSVNEV 106 + L +V Sbjct: 71 PEGSVELYAEKV 82 >d1wf3a2 d.52.3.1 (A:181-298) GTPase Era C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 118 Score = 32.9 bits (75), Expect = 0.026 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 15/79 (18%) Query: 39 IREYLQCHLKQ------AGVAKILIERTHKNCRI--IVYSARP---GLIIGKKGTDIEKI 87 +RE L A + + ER + I I+Y RP ++IG+ G I++I Sbjct: 17 LREEAMKRLWHEVPYAVATKVEEVAERENGVLYIKAILYVERPSQKAIVIGEGGRKIKEI 76 Query: 88 ----RKKLSNMTNSEIHLS 102 RK+L + +++L Sbjct: 77 GQATRKQLEALLGKKVYLD 95 >d1egaa2 d.52.3.1 (A:183-295) GTPase Era C-terminal domain {Escherichia coli [TaxId: 562]} Length = 113 Score = 31.0 bits (70), Expect = 0.086 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 15/79 (18%) Query: 39 IREYLQCHLKQAGVAKILI--------ERTHKNCRIIVYSARPG---LIIGKKGTDIEKI 87 IRE L L + + ER + ++ R G ++IG KG I+ I Sbjct: 16 IREKLMRFLGAELPYSVTVEIERFVSNERGGYDINGLILVEREGQKKMVIGNKGAKIKTI 75 Query: 88 ----RKKLSNMTNSEIHLS 102 RK + M + +HL Sbjct: 76 GIEARKDMQEMFEAPVHLE 94 >d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Score = 27.4 bits (61), Expect = 1.0 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 4/47 (8%) Query: 65 RIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEI 111 R++++ G IIGKKG ++K+R++ + + I++S P+ I Sbjct: 7 RLLMHGKEVGSIIGKKGESVKKMREE----SGARINISEGNCPERII 49 >d2gysa1 b.1.2.1 (A:1-103) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Score = 27.1 bits (60), Expect = 1.1 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 4/27 (14%) Query: 170 EGRVPLQTLRAHIDYGTAV----AETA 192 E +PLQTLR + DY + + A+T Sbjct: 1 EETIPLQTLRCYNDYTSHITCRWADTQ 27 >d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Score = 26.8 bits (59), Expect = 1.6 Identities = 5/32 (15%), Positives = 13/32 (40%), Gaps = 1/32 (3%) Query: 35 EDLKIREYLQCHLKQ-AGVAKILIERTHKNCR 65 E + L ++ ++K++ RT + Sbjct: 9 EKELFEQGLAKFGRRWTKISKLIGSRTVLQVK 40 >d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 74 Score = 25.9 bits (57), Expect = 2.9 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 4/53 (7%) Query: 64 CRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLI 116 + V G I+GK G + + ++ +T + I +S P + Sbjct: 5 VEMAVPENLVGAILGKGGKTLVEYQE----LTGARIQISKKGEFLPGTRNRRV 53 >d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Score = 25.8 bits (57), Expect = 3.2 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 14/64 (21%) Query: 74 GLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEI----------NATLIAQSIAQQ 123 +IGK G ++ + K T ++I + + P +I A I+ + Sbjct: 22 RFVIGKNGEKLQDLELK----TATKIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISAE 77 Query: 124 LERR 127 ++R Sbjct: 78 QDKR 81 >d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Length = 104 Score = 25.7 bits (56), Expect = 3.8 Identities = 21/106 (19%), Positives = 40/106 (37%), Gaps = 11/106 (10%) Query: 50 AGVAKILIERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKP 109 +G + IL E T ++ V G IIG+ G I I K + ++I Sbjct: 3 SGSSGILTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKA----SGAKITCDKESEGTL 58 Query: 110 ------EINATLIAQSIAQQL-ERRVVFRRAMKRAVQSAMRFGADG 148 +I+ T + A+ L +V +++ + + + G Sbjct: 59 LLSRLIKISGTQKEVAAAKHLILEKVSEDEELRKRIAHSASGPSSG 104 >d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Score = 25.5 bits (56), Expect = 4.2 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%) Query: 65 RIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPE 110 V G IIG+ G I +I+++ + +I ++ + PE Sbjct: 11 EYKVPDGMVGFIIGRGGEQISRIQQE----SGCKIQIAPDSGGLPE 52 >d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Score = 25.2 bits (55), Expect = 4.8 Identities = 16/60 (26%), Positives = 24/60 (40%) Query: 65 RIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLIAQSIAQQL 124 ++ + G IIGK G I++IR + + L +E I T AQ L Sbjct: 7 QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYL 66 >d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 74 Score = 25.2 bits (55), Expect = 5.2 Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Query: 65 RIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPE 110 + + G++IG+ G I+KI+ I ++ PE Sbjct: 6 DVPIPRFAVGIVIGRNGEMIKKIQN----DAGVRIQFKPDDGTTPE 47 >d1vi7a2 d.58.11.2 (A:138-208) Hypothetical protein YigZ, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 71 Score = 25.1 bits (55), Expect = 5.6 Identities = 11/59 (18%), Positives = 21/59 (35%) Query: 43 LQCHLKQAGVAKILIERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHL 101 LQC Q + L+ + Y A L + + + KL++ + + L Sbjct: 7 LQCEYHQLTGIEALLGQCDGKIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGSLQL 65 >d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 310 Score = 24.9 bits (54), Expect = 6.5 Identities = 11/67 (16%), Positives = 23/67 (34%), Gaps = 3/67 (4%) Query: 54 KILIERTHKNCRIIVYSARPGLIIGKKGTDIEKIRKKLSNMTN---SEIHLSVNEVPKPE 110 + L+ ++N V++ PG I D + + K M + +++ Sbjct: 63 QELVAVANENEVDFVWAIHPGQDIKWNKEDRDLLLAKFEKMYQLGVRSFAVFFDDISGEG 122 Query: 111 INATLIA 117 N A Sbjct: 123 TNPQKQA 129 >d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Score = 24.7 bits (54), Expect = 6.8 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 2/33 (6%) Query: 35 EDLKIREYLQCH--LKQAGVAKILIERTHKNCR 65 ED K+++ ++ + +A L RT C+ Sbjct: 8 EDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQ 40 >d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Score = 24.5 bits (53), Expect = 7.3 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%) Query: 65 RIIVYSARPGLIIGKKGTDIEKIRKKLSNMTNSEIHLSVNEVPKPEINATLI 116 IV + + GLIIGK G I+ I + + I L N P + N L Sbjct: 4 NFIVPTGKTGLIIGKGGETIKSIS----QQSGARIELQRNPPPNADPNMKLF 51 >d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Score = 24.4 bits (53), Expect = 8.2 Identities = 8/26 (30%), Positives = 16/26 (61%) Query: 65 RIIVYSARPGLIIGKKGTDIEKIRKK 90 + + + G IIG++G +I +IR+ Sbjct: 5 ELTIPNNLIGCIIGRQGANINEIRQM 30 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.320 0.134 0.387 Gapped Lambda K H 0.267 0.0622 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 834,667 Number of extensions: 37757 Number of successful extensions: 148 Number of sequences better than 10.0: 1 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 35 Length of query: 227 Length of database: 2,407,596 Length adjustment: 82 Effective length of query: 145 Effective length of database: 1,281,736 Effective search space: 185851720 Effective search space used: 185851720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 51 (23.7 bits)