HHsearch alignment of GI: 254780256 and MMDB domain: 1vq8_R_
>1vq8_R (R:) 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui}
Probab=100.00 E-value=1.6e-36 Score=235.67 Aligned_cols=121 Identities=21% Similarity=0.174 Sum_probs=113.9
Q ss_pred HHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH------------------------------HCCCH
Q ss_conf 767421011231121487508899999999847986999998886------------------------------58202
Q gi|254780256|r 7 VSKRRMGDNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE------------------------------FSRKR 56 (131)
Q Consensus 7 ~~~~~~~~~e~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~------------------------------f~~kk 56 (131)
.+.....+++++|..+++++||+|+++||++||||++++|+.||+ |+|++
T Consensus 5 ~~~~~~~~~~~ka~~~~~~~S~kK~~~va~~Irg~~v~~A~~~L~~v~~kk~~vp~~r~~~~~~~~~~~~~~~~~~~p~k 84 (155)
T 1vq8_R 5 YSVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEK 84 (155)
T ss_dssp CSSCCCGGGEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTCSSSSBEECCHH
T ss_pred CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 44679998358998478757679999999997798999999999998752322322100455354324357776768488
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEECCCCEEEEEEECCCCCCCCEECCCCEEEEEEEECCCCC
Q ss_conf 479999999999999984059982336999999889811420102566663720178500899998517233
Q gi|254780256|r 57 IAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDEG 128 (131)
Q Consensus 57 ~A~~i~k~L~SA~aNA~~n~~ld~~~L~I~~~~v~~G~~~KR~~prarGRa~~i~k~~sHi~VvL~e~~~~~ 128 (131)
+|..|.++|.||.+||+++ |+|+|+|||++||||+|+++||++||||||++++++|+|||+|+|+|.++++
T Consensus 85 aa~~i~k~L~sa~~nA~~~-g~d~~~L~I~~~~v~kG~~~kr~~~rArGR~~~~~~~~~hi~vvL~E~~~~~ 155 (155)
T 1vq8_R 85 ASKAFLDLLENAVGNADHQ-GFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEPEVED 155 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TSCGGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEECC----
T ss_pred HHHHHHHHHHHHHHHHHHC-CCCHHHEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC
T ss_conf 9999999999999877613-8874462889999778840235561556787860289710899996167779