Query gi|254780256|ref|YP_003064669.1| 50S ribosomal protein L22 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 131 No_of_seqs 114 out of 1450 Neff 5.6 Searched_HMMs 23785 Date Tue May 24 08:43:49 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780256.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2zjr_P 50S ribosomal protein L 100.0 2.2E-42 0 269.3 10.9 123 5-127 12-134 (134) 2 1i4j_A 50S ribosomal protein L 100.0 3.5E-40 1.5E-44 256.3 11.8 110 15-127 1-110 (110) 3 3bbo_U Ribosomal protein L22; 100.0 5.8E-42 0 266.8 0.9 115 14-128 29-143 (199) 4 2ftc_M Mitochondrial ribosomal 100.0 1.6E-39 6.9E-44 252.4 11.8 107 21-127 3-110 (110) 5 3ofq_S 50S ribosomal protein L 100.0 7.1E-41 2.8E-45 260.4 2.8 110 15-124 1-110 (110) 6 1vq8_R 50S ribosomal protein L 100.0 1.1E-37 4.6E-42 241.6 9.7 118 10-128 8-155 (155) 7 2zkr_r 60S ribosomal protein L 100.0 2E-36 8.3E-41 234.2 12.4 116 11-127 9-156 (184) 8 2wwb_I 60S ribosomal protein L 100.0 7.5E-37 3.2E-41 236.7 9.0 119 8-127 6-156 (184) 9 1su0_B NIFU like protein ISCU; 58.9 9.1 0.00038 17.9 3.8 66 17-82 58-152 (159) 10 2z7e_A ISCU protein, NIFU-like 50.6 13 0.00055 17.0 4.1 63 16-78 55-128 (157) 11 3lvl_A NIFU-like protein; prot 27.6 31 0.0013 14.8 6.2 60 17-76 57-126 (129) 12 3ka5_A Ribosome-associated pro 26.3 22 0.00092 15.7 1.5 17 38-54 10-26 (65) 13 3k2t_A LMO2511 protein; lister 24.3 26 0.0011 15.2 1.6 18 38-55 10-27 (57) 14 3lyv_A Ribosome-associated fac 22.8 24 0.001 15.5 1.1 18 38-55 11-28 (66) No 1 >2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 1pnu_Q 1pny_Q 1vor_T 1vou_T 1vow_T ... Probab=100.00 E-value=2.2e-42 Score=269.27 Aligned_cols=123 Identities=36% Similarity=0.432 Sum_probs=114.6 Q ss_pred HHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHEE Q ss_conf 35767421011231121487508899999999847986999998886582024799999999999999840599823369 Q gi|254780256|r 5 RSVSKRRMGDNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENNHDLDVDRLI 84 (131) Q Consensus 5 ~~~~~~~~~~~e~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~f~~kk~A~~i~k~L~SA~aNA~~n~~ld~~~L~ 84 (131) +...+....+++..|+++|+|+||+|+++|+++|||++|+||+.||+|+|+++|.+|+|+|.||++||++|+|+|+|+|| T Consensus 12 k~~~~~~~~~~~~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~f~~kkaA~~i~K~L~SA~aNA~~~~~~d~~~L~ 91 (134) T 2zjr_P 12 KQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVLNSAKANALHNDEMLEDRLF 91 (134) T ss_dssp HHHHHHCCCCCTTEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHHHCCCTTHHHHHHHHTTTHHHHTTTTCCCGGGEE T ss_pred HHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHEE T ss_conf 99888761203456745627448899999999986990999999980197879999999999999999985399889958 Q ss_pred EEEEEECCCCEEEEEEECCCCCCCCEECCCCEEEEEEEECCCC Q ss_conf 9999988981142010256666372017850089999851723 Q gi|254780256|r 85 VSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDE 127 (131) Q Consensus 85 I~~~~v~~G~~~KR~~prarGRa~~i~k~~sHi~VvL~e~~~~ 127 (131) |+++|||+||++|||+||||||++++++|+|||+|+|+|..++ T Consensus 92 I~~~~v~~G~~~KR~~prArGRa~~i~k~~sHI~VvL~ek~~~ 134 (134) T 2zjr_P 92 VKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAEKGNK 134 (134) T ss_dssp EEEEEEEECCCEEEEEECSTTCEEEEEECCEEEEEEEEECCCC T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC T ss_conf 8999989997054769875888876137840489999746889 No 2 >1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ... Probab=100.00 E-value=3.5e-40 Score=256.29 Aligned_cols=110 Identities=44% Similarity=0.494 Sum_probs=106.0 Q ss_pred HEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEECCCC Q ss_conf 12311214875088999999998479869999988865820247999999999999998405998233699999988981 Q gi|254780256|r 15 NEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSV 94 (131) Q Consensus 15 ~e~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~f~~kk~A~~i~k~L~SA~aNA~~n~~ld~~~L~I~~~~v~~G~ 94 (131) +|++|.+||+++||+|+|+|+++|||++|++|+.||+|+|+++|.+|+|+|+||++||++++|+|+|+|||+++|||+|| T Consensus 1 Me~~A~~r~ir~Sp~K~r~va~~IRG~~v~~Al~~L~f~~kk~A~~i~k~L~SA~aNA~~~~~~d~~~L~I~~~~v~~Gp 80 (110) T 1i4j_A 1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGP 80 (110) T ss_dssp CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEE T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCC T ss_conf 90798818653288999999999869919999999821871219999999999999999854998102699999989997 Q ss_pred EEEEEEECCCCCCCCEECCCCEEEEEEEECCCC Q ss_conf 142010256666372017850089999851723 Q gi|254780256|r 95 FMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDE 127 (131) Q Consensus 95 ~~KR~~prarGRa~~i~k~~sHi~VvL~e~~~~ 127 (131) ++ +||||||+++|+||+|||+|+|+|.+.+ T Consensus 81 ~~---kprarGRa~~i~k~~sHi~vvL~e~~~k 110 (110) T 1i4j_A 81 AV---LPRARGRADIIKKRTSHITVILGEKHGK 110 (110) T ss_dssp EE---CSCSSSCCCSCCEEEEEEEEEEEESSCC T ss_pred EE---CCCCCCCCCCCCCCCCCEEEEEECCCCC T ss_conf 48---8267898886068877789999336789 No 3 >3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Probab=100.00 E-value=5.8e-42 Score=266.83 Aligned_cols=115 Identities=29% Similarity=0.379 Sum_probs=110.5 Q ss_pred HHEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEECCC Q ss_conf 11231121487508899999999847986999998886582024799999999999999840599823369999998898 Q gi|254780256|r 14 DNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKS 93 (131) Q Consensus 14 ~~e~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~f~~kk~A~~i~k~L~SA~aNA~~n~~ld~~~L~I~~~~v~~G 93 (131) ..|+.|.++||++||+|+|+|+|+|||++|++|+.||+|+|+++|.+|.++|.||++||++|+|+|+|+|||++||||+| T Consensus 29 ~~ev~a~~~~IriSpkK~R~VadlIRGk~V~eAl~~L~fspkKaA~~I~KlL~SAvaNA~~n~~ld~d~L~I~ea~V~~G 108 (199) T 3bbo_U 29 CDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILELMPYRACYPIFKLIYSAAANASHNKQFNKANLIISKAEVNKG 108 (199) T ss_dssp -CCBCCCCSCCSSCSSSSSTTHHHHTTCBTTTTTTTGGGCCCTTHHHHHHHHHHHTTHHHHTSSCCSSSCEEEECCCCBC T ss_pred CCEEEEECCEEEECHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCC T ss_conf 71379987852048799999999986992999999974696768999999999999998730156644449999998899 Q ss_pred CEEEEEEECCCCCCCCEECCCCEEEEEEEECCCCC Q ss_conf 11420102566663720178500899998517233 Q gi|254780256|r 94 VFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDEG 128 (131) Q Consensus 94 ~~~KR~~prarGRa~~i~k~~sHi~VvL~e~~~~~ 128 (131) |++||++||||||+++|++|+|||||||+|.+..+ T Consensus 109 p~lKR~rpRARGRa~~I~krtsHItIVL~E~s~~~ 143 (199) T 3bbo_U 109 ITLKKVKPRARGRSYMILRPTCHITIVLRDITHFD 143 (199) T ss_dssp CCCCCCCCSSSSCSCCCCCCCBCCCCEEECCCCCC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCHH T ss_conf 74448798757888875688634899998677146 No 4 >2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_M Probab=100.00 E-value=1.6e-39 Score=252.35 Aligned_cols=107 Identities=27% Similarity=0.421 Sum_probs=103.6 Q ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC-HHHEEEEEEEECCCCEEEEE Q ss_conf 14875088999999998479869999988865820247999999999999998405998-23369999998898114201 Q gi|254780256|r 21 ASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENNHDLD-VDRLIVSEAYVGKSVFMKRF 99 (131) Q Consensus 21 ~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~f~~kk~A~~i~k~L~SA~aNA~~n~~ld-~~~L~I~~~~v~~G~~~KR~ 99 (131) .+++++||+|+|+|+++|||++|+||++||+|+|+|+|..|.|+|+||++||++|+|+| +|+|||+++|||+||++||| T Consensus 3 ~r~ir~SpkK~r~v~~~IrG~~v~~A~~~L~f~~kkaA~~i~k~l~sA~aNA~~~~~~~~~~~L~I~~~~v~~G~~~KR~ 82 (110) T 2ftc_M 3 RRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKRI 82 (110) T ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCC T ss_conf 56474487999999999869919999999811881008999999999999999861999767579999998999705476 Q ss_pred EECCCCCCCCEECCCCEEEEEEEECCCC Q ss_conf 0256666372017850089999851723 Q gi|254780256|r 100 HCRGRQRIGRIVRPFSRLTVIVREVSDE 127 (131) Q Consensus 100 ~prarGRa~~i~k~~sHi~VvL~e~~~~ 127 (131) +||||||+++|+||+|||+|+|+|.+++ T Consensus 83 ~prarGRa~~i~k~~sHi~vvL~E~~~p 110 (110) T 2ftc_M 83 RYHGRGRFGIMEKVYCHYFVKLVEGPPP 110 (110) T ss_pred CCCCCCCCCCCCCCCCCEEEEEEECCCC T ss_conf 9875888886468731189999827999 No 5 >3ofq_S 50S ribosomal protein L22; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ... Probab=100.00 E-value=7.1e-41 Score=260.38 Aligned_cols=110 Identities=42% Similarity=0.523 Sum_probs=107.9 Q ss_pred HEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEECCCC Q ss_conf 12311214875088999999998479869999988865820247999999999999998405998233699999988981 Q gi|254780256|r 15 NEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSV 94 (131) Q Consensus 15 ~e~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~f~~kk~A~~i~k~L~SA~aNA~~n~~ld~~~L~I~~~~v~~G~ 94 (131) +|++|.++|+|+||+|+|+|+++|||++|+||++||+|+|+++|..|.|+|+||++||++++|+|+|+|||.++|||+|| T Consensus 1 me~~A~~k~~r~SpkK~r~va~~IRG~~v~~Al~~L~f~~~k~a~~i~k~l~sA~anA~~~~~~d~~~L~I~~~~v~~G~ 80 (110) T 3ofq_S 1 METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGP 80 (110) T ss_dssp CCCEEEESSCSSCHHHHHHHHTTSSSSCSSSTTTTTTTCCSGGGGTTHHHHHHHHHHHHSSSCCCGGGCCCCCEEEECCC T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEECCCC T ss_conf 95899838863287999999999869929999999865871108999999999999877512477030199999979986 Q ss_pred EEEEEEECCCCCCCCEECCCCEEEEEEEEC Q ss_conf 142010256666372017850089999851 Q gi|254780256|r 95 FMKRFHCRGRQRIGRIVRPFSRLTVIVREV 124 (131) Q Consensus 95 ~~KR~~prarGRa~~i~k~~sHi~VvL~e~ 124 (131) ++|||+||||||++++++|+|||+|+|+|. T Consensus 81 ~~KR~~prarGRa~~i~k~~sHi~vvL~Ek 110 (110) T 3ofq_S 81 SMKRIMPRAKGRADRILKRTSHITVVVSDR 110 (110) T ss_dssp CEECCEECGGGCEECCEECCCEEEEECCCC T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECC T ss_conf 304768962588885237861489999269 No 6 >1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ... Probab=100.00 E-value=1.1e-37 Score=241.57 Aligned_cols=118 Identities=20% Similarity=0.180 Sum_probs=112.1 Q ss_pred HHHHHHEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH------------------------------HCCCHHHH Q ss_conf 421011231121487508899999999847986999998886------------------------------58202479 Q gi|254780256|r 10 RRMGDNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE------------------------------FSRKRIAG 59 (131) Q Consensus 10 ~~~~~~e~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~------------------------------f~~kk~A~ 59 (131) ...++++++|.++++++||+|++.|+++|||+++++|+.+|+ |+|+++|+ T Consensus 8 ~~~~~~~akA~~~~~riS~kk~~~v~~~Irg~~v~~A~~~L~~v~~kk~~vpf~r~~~~v~~~~~~~~~~~g~~P~kaa~ 87 (155) T 1vq8_R 8 EADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASK 87 (155) T ss_dssp CCCGGGEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTCSSSSBEECCHHHHH T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 89998148998488755689999999997698999999999998865466677644466243224357676658067899 Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHEEEEEEEECCCCEEEEEEECCCCCCCCEECCCCEEEEEEEECCCCC Q ss_conf 999999999999984059982336999999889811420102566663720178500899998517233 Q gi|254780256|r 60 EVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDEG 128 (131) Q Consensus 60 ~i~k~L~SA~aNA~~n~~ld~~~L~I~~~~v~~G~~~KR~~prarGRa~~i~k~~sHi~VvL~e~~~~~ 128 (131) +|.|+|+||.+||+++ ++|+|+|||++||||+||++||++|||+||++++++++|||+|||+|.+.|+ T Consensus 88 ~i~kllksa~aNA~~~-~~d~~~l~I~~~~v~kg~~~kr~~pRA~GRa~~~~k~~~hi~Ivl~E~~~ee 155 (155) T 1vq8_R 88 AFLDLLENAVGNADHQ-GFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEPEVED 155 (155) T ss_dssp HHHHHHHHHHHHHHHT-TSCGGGSEEEEEEEEEEEEECCEEECGGGCEEECCEEEEEEEEEEECC---- T ss_pred HHHHHHHHHHHHHHHC-CCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC T ss_conf 9999999999999854-8885561899999899872356675547788870489712899997068779 No 7 >2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Probab=100.00 E-value=2e-36 Score=234.19 Aligned_cols=116 Identities=26% Similarity=0.256 Sum_probs=109.3 Q ss_pred HHHHHEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHC--------------------------------CCHHH Q ss_conf 2101123112148750889999999984798699999888658--------------------------------20247 Q gi|254780256|r 11 RMGDNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFS--------------------------------RKRIA 58 (131) Q Consensus 11 ~~~~~e~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~f~--------------------------------~kk~A 58 (131) ..+++.++|.++++++||+|+++||++||||++++|+.+|+|+ |+++| T Consensus 9 ~~~~k~akA~~~~~riS~Kk~r~va~~IrG~~v~~A~~~L~~v~~kk~~vp~kr~~~~v~~~~~~~~~~~~~gr~P~kaa 88 (184) T 2zkr_r 9 ENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSA 88 (184) T ss_dssp SCTTTEEEEEECSCCSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCCSTTSCSCSBEECCHHHH T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHH T ss_conf 89984268966877476799999999987990999999999888567431056652001136563024766454758999 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEECCCCEEEEEEECCCCCCCCEECCCCEEEEEEEECCCC Q ss_conf 999999999999998405998233699999988981142010256666372017850089999851723 Q gi|254780256|r 59 GEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDE 127 (131) Q Consensus 59 ~~i~k~L~SA~aNA~~n~~ld~~~L~I~~~~v~~G~~~KR~~prarGRa~~i~k~~sHi~VvL~e~~~~ 127 (131) ..|.++|+||.+||+++ |+|+|+|||+++|||+||++||++|||+||++++++++|||+|||+|.++. T Consensus 89 ~~i~klL~sa~aNA~~~-~ld~~~L~I~~i~v~~G~~~kR~~pRArGRa~~i~k~~shI~vvl~E~~~~ 156 (184) T 2zkr_r 89 EFLLHMLKNAESNAELK-GLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQI 156 (184) T ss_dssp HHHHHHHHHHHHHHHHH-TSCTTTCEEEEEEEC-CCCEEEEEEETTTEEEEEEEC-CCEEEEEECC--- T ss_pred HHHHHHHHHHHHHHHHC-CCCHHHEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC T ss_conf 99999999999878734-998033499999979886046776166888787317984589999507745 No 8 >2wwb_I 60S ribosomal protein L17-A; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_I 2ww9_I 1s1i_N Probab=100.00 E-value=7.5e-37 Score=236.65 Aligned_cols=119 Identities=28% Similarity=0.254 Sum_probs=111.2 Q ss_pred HHHHHHHHEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH--------------------------------HCCC Q ss_conf 67421011231121487508899999999847986999998886--------------------------------5820 Q gi|254780256|r 8 SKRRMGDNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE--------------------------------FSRK 55 (131) Q Consensus 8 ~~~~~~~~e~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~--------------------------------f~~k 55 (131) .....+++.++|.++|+|+||+|+++||++||||++++|+.+|+ |.|+ T Consensus 6 ~~~~~~~k~akA~~~~lriS~Kk~r~va~~IrG~~v~~A~~~L~~V~~kK~~Vpf~r~~~~vg~~~~~~~~g~~~gr~P~ 85 (184) T 2wwb_I 6 ATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVTKARWPA 85 (184) T ss_dssp SCCCCGGGEEEEEEEEESSCHHHHHHHHHHSCSSCHHHHHHHHHHHHHTSCSCCCSSCCCCSSCCCCSCCSSCCCCCCCT T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHCCCCCCCCCH T ss_conf 68789981289954887246699999999987984999999999987500420367761765634566641887774857 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHEEEEEEEECCCCEEEEEEECCCCCCCCEECCCCEEEEEEEECCCC Q ss_conf 247999999999999998405998233699999988981142010256666372017850089999851723 Q gi|254780256|r 56 RIAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDE 127 (131) Q Consensus 56 k~A~~i~k~L~SA~aNA~~n~~ld~~~L~I~~~~v~~G~~~KR~~prarGRa~~i~k~~sHi~VvL~e~~~~ 127 (131) ++|.+|.|+|+||.+||++ .|+|+|+|||+++|||+||++||++|||+||++++++++|||+|||+|.++. T Consensus 86 kaa~~i~KlL~sa~aNA~~-~~ld~~~L~I~~i~v~~G~~~KR~~pRA~GRa~~i~k~~~HI~ivl~e~~~~ 156 (184) T 2wwb_I 86 KSVKFVQGLLQNAAANAEA-KGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVTEKEEA 156 (184) T ss_dssp HHHHHHHHHHHHHHHHTTS-SCCCSSCCCEEEEEEECCCCEEEEEEEETTEEEEEEECCEEEEEEEECC--- T ss_pred HHHHHHHHHHHHHHHHHHH-CCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC T ss_conf 8999999999999987651-1367324399999988885336767123568886038974489999737644 No 9 >1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2 Probab=58.91 E-value=9.1 Score=17.94 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=46.9 Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHH----------------------H-------CCCHHHHHHHHHHHH Q ss_conf 31121487508899999999847986999998886----------------------5-------820247999999999 Q gi|254780256|r 17 ANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE----------------------F-------SRKRIAGEVRKTLCS 67 (131) Q Consensus 17 ~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L~----------------------f-------~~kk~A~~i~k~L~S 67 (131) ++-.++.--+|-==+..++.+|.|+++++|..... | +..+.|.+-.++|+. T Consensus 58 i~f~~~GCai~~ASasi~~e~i~Gk~~~e~~~l~~~~~~~l~~~~~~~~~~l~~l~~l~~v~~~p~R~~Ca~L~~~Al~~ 137 (159) T 1su0_B 58 IAFAGNGCTISTASSSMMTDAVIGKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFPQRIKCSTLAWNALKE 137 (159) T ss_dssp EEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCGGGGGGGGGGGGGGGGGCHHHHHHHHHHHHHHHH T ss_pred EEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH T ss_conf 89997177898999999999984998999999999999998367787322235788740756686222999879999999 Q ss_pred HHHHHHHCCCCCHHH Q ss_conf 999998405998233 Q gi|254780256|r 68 AVANAENNHDLDVDR 82 (131) Q Consensus 68 A~aNA~~n~~ld~~~ 82 (131) |+.++.++.....++ T Consensus 138 al~~~~~~~~~~~~~ 152 (159) T 1su0_B 138 AIKRSANAQHLTDQN 152 (159) T ss_dssp HHTC----------- T ss_pred HHHHHHHCCCCCHHC T ss_conf 999787433332102 No 10 >2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus} Probab=50.64 E-value=13 Score=17.03 Aligned_cols=63 Identities=13% Similarity=0.055 Sum_probs=46.4 Q ss_pred EEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHH---------HH--CCCHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 23112148750889999999984798699999888---------65--82024799999999999999840599 Q gi|254780256|r 16 EANAIASMLRVSPQKLNLVAAMIRGKRVSDALADL---------EF--SRKRIAGEVRKTLCSAVANAENNHDL 78 (131) Q Consensus 16 e~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~L---------~f--~~kk~A~~i~k~L~SA~aNA~~n~~l 78 (131) +++-....--+|-==+-.++++|+|+++++|+.+- .+ ...+.|.+-..+|+.|+.+...+.|- T Consensus 55 di~f~~~GCais~AsaSil~e~i~Gktl~ea~~I~~~~i~e~Lg~lpp~R~~CA~La~~Al~~Al~dy~~k~g~ 128 (157) T 2z7e_A 55 DVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKDYLMKQGR 128 (157) T ss_dssp EEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHCCHHHHHHHHTCCCCSSCCTTCCHHHHHHHHHHHHHHTTTC T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 88999768756678999999997699599998512589999866999531429999999999999999974588 No 11 >3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 1q48_A 1r9p_A 1wfz_A Probab=27.60 E-value=31 Score=14.82 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=42.3 Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHH--------HHH--CCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 311214875088999999998479869999988--------865--820247999999999999998405 Q gi|254780256|r 17 ANAIASMLRVSPQKLNLVAAMIRGKRVSDALAD--------LEF--SRKRIAGEVRKTLCSAVANAENNH 76 (131) Q Consensus 17 ~~A~~k~ir~Sp~K~r~va~~IrG~~v~eAl~~--------L~f--~~kk~A~~i~k~L~SA~aNA~~n~ 76 (131) ++-.+..--+|-==.-.++.+|+|+++++|..+ |.. +..+.|.+...+|+.|+.+.+.++ T Consensus 57 i~F~~~GC~is~Asas~~~e~i~Gkt~~ea~~i~~~~i~~~l~~~p~r~~Ca~L~~~al~~al~~y~~k~ 126 (129) T 3lvl_A 57 ARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 126 (129) T ss_dssp EEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCHHHHHHHHTCCGGGGHHHHHHHHHHHHHHHHHHHSC T ss_pred EEEEECCCHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH T ss_conf 8777358889999999999998599699998653689998733787512099999999999999999875 No 12 >3ka5_A Ribosome-associated protein Y (PSRP-1); structural genomics, PSI-2, protein structure initiative; 1.80A {Clostridium acetobutylicum} Probab=26.25 E-value=22 Score=15.69 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=13.5 Q ss_pred HCCCCHHHHHHHHHHCC Q ss_conf 47986999998886582 Q gi|254780256|r 38 IRGKRVSDALADLEFSR 54 (131) Q Consensus 38 IrG~~v~eAl~~L~f~~ 54 (131) ++-|+++||+.||..+. T Consensus 10 ~kpmsveEAv~qmel~~ 26 (65) T 3ka5_A 10 IKPMSEEEAVLEMELLG 26 (65) T ss_dssp CSCBCHHHHHHHHHHHT T ss_pred CCCCCHHHHHHHHHCCC T ss_conf 78899999999975489 No 13 >3k2t_A LMO2511 protein; listeria monocytogenes,binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Listeria monocytogenes} Probab=24.34 E-value=26 Score=15.23 Aligned_cols=18 Identities=6% Similarity=0.209 Sum_probs=14.1 Q ss_pred HCCCCHHHHHHHHHHCCC Q ss_conf 479869999988865820 Q gi|254780256|r 38 IRGKRVSDALADLEFSRK 55 (131) Q Consensus 38 IrG~~v~eAl~~L~f~~k 55 (131) ++-|+++||+.||..+.. T Consensus 10 ~kpmsveEAv~~mel~~~ 27 (57) T 3k2t_A 10 LKPMDSEEAVLQMNLLGH 27 (57) T ss_dssp -CCBCHHHHHHHHHHHTC T ss_pred CCCCCHHHHHHHHHCCCC T ss_conf 788999999999754799 No 14 >3lyv_A Ribosome-associated factor Y; ribosomal protein S30AE family, structural genomics, PSI-2, structure initiative; 2.70A {Streptococcus pyogenes} Probab=22.81 E-value=24 Score=15.48 Aligned_cols=18 Identities=17% Similarity=0.266 Sum_probs=13.4 Q ss_pred HCCCCHHHHHHHHHHCCC Q ss_conf 479869999988865820 Q gi|254780256|r 38 IRGKRVSDALADLEFSRK 55 (131) Q Consensus 38 IrG~~v~eAl~~L~f~~k 55 (131) ++-|+++||+.||+.+.. T Consensus 11 ~kpmsveEAv~qmel~~~ 28 (66) T 3lyv_A 11 LKPMDVEEARLQMELLGH 28 (66) T ss_dssp CCEECHHHHHHHHHTTTC T ss_pred CCCCCHHHHHHHHHCCCC T ss_conf 788999999998744799 Done!