RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780256|ref|YP_003064669.1| 50S ribosomal protein L22
[Candidatus Liberibacter asiaticus str. psy62]
(131 letters)
>gnl|CDD|179067 PRK00565, rplV, 50S ribosomal protein L22; Reviewed.
Length = 112
Score = 150 bits (381), Expect = 1e-37
Identities = 59/112 (52%), Positives = 76/112 (67%)
Query: 15 NEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAEN 74
EA A A +RVSP+K LVA +IRGK+V +ALA L+FS K+ A V+K L SA+ANAEN
Sbjct: 1 MEAKAKARYVRVSPRKARLVADLIRGKKVEEALAILKFSPKKAARLVKKVLKSAIANAEN 60
Query: 75 NHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSD 126
NH LD+D L+V EAYV + +KRF R R R RI + S +TV+V E +
Sbjct: 61 NHGLDIDNLVVKEAYVDEGPTLKRFRPRARGRASRIRKRTSHITVVVAEKEE 112
>gnl|CDD|130116 TIGR01044, rplV_bact, ribosomal protein L22, bacterial type. This
model decribes bacterial and chloroplast ribosomal
protein L22.
Length = 103
Score = 85.6 bits (212), Expect = 3e-18
Identities = 46/103 (44%), Positives = 65/103 (63%)
Query: 19 AIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENNHDL 78
A A +R+SP+K LVA +IRGK VS AL L F+ K+ A ++K L SA+ANAE+N+ L
Sbjct: 1 AKARFVRISPRKARLVADLIRGKSVSQALDILRFTPKKAAPLIKKVLASAIANAEHNYGL 60
Query: 79 DVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIV 121
D D L+V +V + +KR R + R RI + S +TV+V
Sbjct: 61 DADNLVVVTIFVDEGPTLKRIRPRAKGRASRIRKRTSHITVVV 103
>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion
protein; Provisional.
Length = 311
Score = 55.5 bits (133), Expect = 5e-09
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 16 EANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAE-N 74
I + +S +K +LV ++R K V +A+ L + K+ A V K L SA++N + N
Sbjct: 2 TNKVIQRNIHISHRKASLVIDLVRNKPVHEAIRILSNTPKKFAPIVLKLLNSAISNVQHN 61
Query: 75 NHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDE 127
+ D+D +L + + + MKR R + ++ + + L +++ + +E
Sbjct: 62 SKDMDPSKLYIYKIVANQGPTMKRTLPRAKGSADQLFKRTTHLEIVLSDDVNE 114
>gnl|CDD|179794 PRK04223, rpl22p, 50S ribosomal protein L22P; Reviewed.
Length = 153
Score = 43.3 bits (103), Expect = 2e-05
Identities = 33/142 (23%), Positives = 53/142 (37%), Gaps = 31/142 (21%)
Query: 13 GDNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE-------------FSRK---- 55
+ A A+ L +SP+ +A IRG ++ +A A LE ++K
Sbjct: 12 PEKTAKAMGRELPISPKHSVEIAREIRGMKLDEAKAYLEDVIALKRAVPFKRHNKKVGHR 71
Query: 56 -------------RIAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCR 102
+ A K L +A ANAE LD ++L++ K +K + R
Sbjct: 72 KGIDGWPAGRYPVKAAKAFLKLLENAEANAEYK-GLDTEKLVIVHIAAHKGRVIKGYMPR 130
Query: 103 GRQRIGRIVRPFSRLTVIVREV 124
R + VI+ EV
Sbjct: 131 AFGRATPKNTETVNIEVILEEV 152
>gnl|CDD|130110 TIGR01038, L22_arch, ribosomal protein
L22(archaeal)/L17(eukaryotic/archaeal). This model
describes the ribosomal protein of the eukaryotic
cytosol and of the Archaea, variously designated as L17,
L22, and L23. The corresponding bacterial homolog,
described by a separate model, is designated L22.
Length = 150
Score = 39.8 bits (93), Expect = 2e-04
Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 33/140 (23%)
Query: 17 ANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE----------FSR------------ 54
A A LRVS + A IRG + A LE F R
Sbjct: 12 AKARGRNLRVSFKNARETARAIRGMELDKARKYLEDVIEMKRAVPFRRYNGKVGHRRGLK 71
Query: 55 ----------KRIAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCRGR 104
+ A + K L +A ANAE LDV++L++ K ++R+ R
Sbjct: 72 EWGWTAGRYPVKAAKFILKVLQNAEANAEYK-GLDVEKLVIIHIQANKGPKIRRWMPRAF 130
Query: 105 QRIGRIVRPFSRLTVIVREV 124
R + + ++V E
Sbjct: 131 GRATPYNSSPTHIELVVEEK 150
>gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 28.5 bits (65), Expect = 0.48
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 30 KLNLVAAMIRGKRVS--DALADLE---FSRKRIAGEVRKTLCSAVANAEN-NHDLD--VD 81
+L ++A ++RG++ L +L F R R+ GEV L +N H ++ VD
Sbjct: 149 RLQILAPVVRGRKGEHKKLLENLRKQGFVRVRVDGEVY-DLDEPPKLDKNKKHTIEVVVD 207
Query: 82 RLIVSE 87
RL+V E
Sbjct: 208 RLVVKE 213
>gnl|CDD|151892 pfam11453, DUF2950, Protein of unknown function (DUF2950). This is
a bacterial family of uncharacterized proteins.
Length = 266
Score = 28.0 bits (63), Expect = 0.77
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 3 GKRSVSKRRMGDNEANAIASML 24
G+ + RR+G NE AI + L
Sbjct: 98 GREEILTRRIGRNELAAIQTCL 119
>gnl|CDD|179095 PRK00719, PRK00719, alkanesulfonate monooxygenase; Provisional.
Length = 378
Score = 26.5 bits (59), Expect = 1.9
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 108 GRIVRPFSRLTVIVREVSDE 127
GR VR RL VIVRE ++E
Sbjct: 217 GRKVRFGIRLHVIVRETNEE 236
>gnl|CDD|182339 PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.
Length = 158
Score = 26.3 bits (58), Expect = 2.3
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 7/29 (24%)
Query: 76 HDLDVDRLIVSE----AYVGKSVFMKRFH 100
H LDV+R+ V E A VG F FH
Sbjct: 121 HALDVERIDVDEGASGAMVG---FNVHFH 146
>gnl|CDD|185501 PTZ00178, PTZ00178, 60S ribosomal protein L17; Provisional.
Length = 181
Score = 25.8 bits (57), Expect = 3.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 61 VRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRI 107
V L +A ANAE LDV++L++S V ++ +R R RI
Sbjct: 91 VLSLLKNAEANAEA-KGLDVEKLVISHVQVNRAPRGRRRTYRAHGRI 136
>gnl|CDD|132604 TIGR03565, alk_sulf_monoox, alkanesulfonate monooxygenase,
FMNH(2)-dependent. Members of this protein family are
monooxygenases that catalyze desulfonation of aliphatic
sulfonates such as methane sulfonate. This enzyme uses
reduced FMN, although various others members of the same
luciferase-like monooxygenase family (pfam00296) are
F420-dependent enzymes.
Length = 346
Score = 25.0 bits (55), Expect = 5.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 106 RIGRIVRPFSRLTVIVREVSDE 127
+ GR VR RL VIVRE +E
Sbjct: 214 KRGRTVRFGIRLHVIVRETEEE 235
>gnl|CDD|180992 PRK07476, eutB, threonine dehydratase; Provisional.
Length = 322
Score = 24.5 bits (54), Expect = 8.8
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 47 LADLEFSRKRIAGEVRKT 64
LAD+ +R+RIAG VR+T
Sbjct: 3 LADIYRARRRIAGRVRRT 20
>gnl|CDD|163143 TIGR03121, one_C_dehyd_A, formylmethanofuran dehydrogenase subunit
A. Members of this largely archaeal protein family are
subunit A of the formylmethanofuran dehydrogenase.
Nomenclature in some bacteria may reflect inclusion of
the formyltransferase described by TIGR03119 as part of
the complex, and therefore call this protein
formyltransferase/hydrolase complex Fhc subunit A. Note
that this model does not distinguish tungsten (FwdA)
from molybdenum-containing (FmdA) forms of this enzyme;
a single gene from this family is expressed
constitutively in Methanobacterium thermoautotrophicum,
which has both tungsten and molybdenum forms and may
work interchangeably.
Length = 556
Score = 24.6 bits (54), Expect = 9.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 106 RIGRIVRPFSRLTVIVREVSDEGKVV 131
R G+IV P S T + + GK+V
Sbjct: 26 RDGKIVEPVSGGTKPAKVIDASGKLV 51
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.322 0.134 0.365
Gapped
Lambda K H
0.267 0.0725 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,076,054
Number of extensions: 124296
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 26
Length of query: 131
Length of database: 5,994,473
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,201,009
Effective search space: 201648432
Effective search space used: 201648432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (23.8 bits)