RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780256|ref|YP_003064669.1| 50S ribosomal protein L22 [Candidatus Liberibacter asiaticus str. psy62] (131 letters) >d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]} Length = 127 Score = 114 bits (288), Expect = 2e-27 Identities = 45/124 (36%), Positives = 65/124 (52%) Query: 4 KRSVSKRRMGDNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRK 63 K+ ++ A+A +R+SP+K+ LV +IRGK V DA L F + + V K Sbjct: 4 KKQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAK 63 Query: 64 TLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVRE 123 L SA ANA +N ++ DRL V EAYV +KR R R I + S +T+IV E Sbjct: 64 VLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAE 123 Query: 124 VSDE 127 ++ Sbjct: 124 KGNK 127 >d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]} Length = 106 Score = 109 bits (275), Expect = 6e-26 Identities = 45/105 (42%), Positives = 65/105 (61%) Query: 19 AIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENNHDL 78 A R S QK+ LVA +IRGK+VS AL L ++ K+ A V+K L SA+ANAE+N Sbjct: 1 AKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGA 60 Query: 79 DVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVRE 123 D+D L V++ +V + MKR R + R RI++ S +TV+V + Sbjct: 61 DIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 105 >d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]} Length = 110 Score = 107 bits (270), Expect = 2e-25 Identities = 48/112 (42%), Positives = 63/112 (56%), Gaps = 3/112 (2%) Query: 16 EANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENN 75 EA AIA +R+SP+K+ LV +IRGK + +A L ++ KR A V K L SA ANA NN Sbjct: 2 EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNN 61 Query: 76 HDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDE 127 HD DRL V AYV + + R R R I + S +TVI+ E + Sbjct: 62 HDALEDRLYVKAAYVDEGPAVLP---RARGRADIIKKRTSHITVILGEKHGK 110 >d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150 Score = 87.3 bits (216), Expect = 4e-19 Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 31/140 (22%) Query: 14 DNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE---------------------- 51 D A A+ ++S + +A I+GK +A+ LE Sbjct: 11 DTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKS 70 Query: 52 --------FSRKRIAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCRG 103 ++ + L +AV NA++ D + + + K + R Sbjct: 71 KVDGWDAGRYPEKASKAFLDLLENAVGNADHQG-FDGEAMTIKHVAAHKVGEQQGRKPRA 129 Query: 104 RQRIGRIVRPFSRLTVIVRE 123 R P + +I+ E Sbjct: 130 MGRASAWNSPQVDVELILEE 149 >d2b7ma1 a.118.17.2 (A:73-623) Exocyst complex component EXO70 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 551 Score = 25.3 bits (55), Expect = 2.0 Identities = 8/40 (20%), Positives = 18/40 (45%) Query: 15 NEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSR 54 NEA+ +L+ ++ L ++ D L D++ + Sbjct: 7 NEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQ 46 >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 Score = 23.9 bits (50), Expect = 5.2 Identities = 5/17 (29%), Positives = 12/17 (70%) Query: 83 LIVSEAYVGKSVFMKRF 99 +I+ ++ VGK+ M ++ Sbjct: 6 IILGDSGVGKTSLMNQY 22 >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 Score = 23.9 bits (50), Expect = 5.4 Identities = 6/17 (35%), Positives = 9/17 (52%) Query: 83 LIVSEAYVGKSVFMKRF 99 ++V VGKS +F Sbjct: 10 VVVGGGGVGKSALTIQF 26 >d1a5ta1 a.80.1.1 (A:208-330) delta prime subunit {Escherichia coli [TaxId: 562]} Length = 123 Score = 23.6 bits (51), Expect = 5.7 Identities = 7/17 (41%), Positives = 11/17 (64%) Query: 62 RKTLCSAVANAENNHDL 78 R+TLC A+A + + D Sbjct: 6 RETLCQALAYSVPSGDW 22 >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 Score = 23.5 bits (49), Expect = 5.9 Identities = 6/17 (35%), Positives = 11/17 (64%) Query: 83 LIVSEAYVGKSVFMKRF 99 ++V + GK+ F+KR Sbjct: 7 VLVGDGGTGKTTFVKRH 23 >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 Score = 23.4 bits (49), Expect = 6.1 Identities = 6/17 (35%), Positives = 10/17 (58%) Query: 83 LIVSEAYVGKSVFMKRF 99 + + E VGK+ + RF Sbjct: 4 VFLGEQSVGKTSLITRF 20 >d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]} Length = 331 Score = 23.2 bits (49), Expect = 7.0 Identities = 9/24 (37%), Positives = 13/24 (54%) Query: 53 SRKRIAGEVRKTLCSAVANAENNH 76 SRK +A +R AV A++ H Sbjct: 2 SRKELANAIRALSMDAVQKAKSGH 25 >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 Score = 23.0 bits (48), Expect = 8.8 Identities = 6/17 (35%), Positives = 9/17 (52%) Query: 83 LIVSEAYVGKSVFMKRF 99 ++V VGKS +F Sbjct: 8 IMVGSGGVGKSALTLQF 24 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.134 0.365 Gapped Lambda K H 0.267 0.0648 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 453,847 Number of extensions: 19156 Number of successful extensions: 105 Number of sequences better than 10.0: 1 Number of HSP's gapped: 103 Number of HSP's successfully gapped: 16 Length of query: 131 Length of database: 2,407,596 Length adjustment: 76 Effective length of query: 55 Effective length of database: 1,364,116 Effective search space: 75026380 Effective search space used: 75026380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 48 (22.4 bits)