RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780256|ref|YP_003064669.1| 50S ribosomal protein L22
[Candidatus Liberibacter asiaticus str. psy62]
(131 letters)
>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 127
Score = 114 bits (288), Expect = 2e-27
Identities = 45/124 (36%), Positives = 65/124 (52%)
Query: 4 KRSVSKRRMGDNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRK 63
K+ ++ A+A +R+SP+K+ LV +IRGK V DA L F + + V K
Sbjct: 4 KKQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAK 63
Query: 64 TLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVRE 123
L SA ANA +N ++ DRL V EAYV +KR R R I + S +T+IV E
Sbjct: 64 VLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGSANIIKKRTSHITIIVAE 123
Query: 124 VSDE 127
++
Sbjct: 124 KGNK 127
>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli
[TaxId: 562]}
Length = 106
Score = 109 bits (275), Expect = 6e-26
Identities = 45/105 (42%), Positives = 65/105 (61%)
Query: 19 AIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENNHDL 78
A R S QK+ LVA +IRGK+VS AL L ++ K+ A V+K L SA+ANAE+N
Sbjct: 1 AKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGA 60
Query: 79 DVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVRE 123
D+D L V++ +V + MKR R + R RI++ S +TV+V +
Sbjct: 61 DIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSHITVVVSD 105
>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus,
subsp. Thermus thermophilus [TaxId: 271]}
Length = 110
Score = 107 bits (270), Expect = 2e-25
Identities = 48/112 (42%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Query: 16 EANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSRKRIAGEVRKTLCSAVANAENN 75
EA AIA +R+SP+K+ LV +IRGK + +A L ++ KR A V K L SA ANA NN
Sbjct: 2 EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNN 61
Query: 76 HDLDVDRLIVSEAYVGKSVFMKRFHCRGRQRIGRIVRPFSRLTVIVREVSDE 127
HD DRL V AYV + + R R R I + S +TVI+ E +
Sbjct: 62 HDALEDRLYVKAAYVDEGPAVLP---RARGRADIIKKRTSHITVILGEKHGK 110
>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 150
Score = 87.3 bits (216), Expect = 4e-19
Identities = 23/140 (16%), Positives = 44/140 (31%), Gaps = 31/140 (22%)
Query: 14 DNEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLE---------------------- 51
D A A+ ++S + +A I+GK +A+ LE
Sbjct: 11 DTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKS 70
Query: 52 --------FSRKRIAGEVRKTLCSAVANAENNHDLDVDRLIVSEAYVGKSVFMKRFHCRG 103
++ + L +AV NA++ D + + + K + R
Sbjct: 71 KVDGWDAGRYPEKASKAFLDLLENAVGNADHQG-FDGEAMTIKHVAAHKVGEQQGRKPRA 129
Query: 104 RQRIGRIVRPFSRLTVIVRE 123
R P + +I+ E
Sbjct: 130 MGRASAWNSPQVDVELILEE 149
>d2b7ma1 a.118.17.2 (A:73-623) Exocyst complex component EXO70
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 551
Score = 25.3 bits (55), Expect = 2.0
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 15 NEANAIASMLRVSPQKLNLVAAMIRGKRVSDALADLEFSR 54
NEA+ +L+ ++ L ++ D L D++ +
Sbjct: 7 NEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQ 46
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 23.9 bits (50), Expect = 5.2
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 83 LIVSEAYVGKSVFMKRF 99
+I+ ++ VGK+ M ++
Sbjct: 6 IILGDSGVGKTSLMNQY 22
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 23.9 bits (50), Expect = 5.4
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 83 LIVSEAYVGKSVFMKRF 99
++V VGKS +F
Sbjct: 10 VVVGGGGVGKSALTIQF 26
>d1a5ta1 a.80.1.1 (A:208-330) delta prime subunit {Escherichia
coli [TaxId: 562]}
Length = 123
Score = 23.6 bits (51), Expect = 5.7
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 62 RKTLCSAVANAENNHDL 78
R+TLC A+A + + D
Sbjct: 6 RETLCQALAYSVPSGDW 22
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 23.5 bits (49), Expect = 5.9
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 83 LIVSEAYVGKSVFMKRF 99
++V + GK+ F+KR
Sbjct: 7 VLVGDGGTGKTTFVKRH 23
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 23.4 bits (49), Expect = 6.1
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 83 LIVSEAYVGKSVFMKRF 99
+ + E VGK+ + RF
Sbjct: 4 VFLGEQSVGKTSLITRF 20
>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module
{Escherichia coli [TaxId: 562]}
Length = 331
Score = 23.2 bits (49), Expect = 7.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 53 SRKRIAGEVRKTLCSAVANAENNH 76
SRK +A +R AV A++ H
Sbjct: 2 SRKELANAIRALSMDAVQKAKSGH 25
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 23.0 bits (48), Expect = 8.8
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 83 LIVSEAYVGKSVFMKRF 99
++V VGKS +F
Sbjct: 8 IMVGSGGVGKSALTLQF 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.134 0.365
Gapped
Lambda K H
0.267 0.0648 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 453,847
Number of extensions: 19156
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 16
Length of query: 131
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 55
Effective length of database: 1,364,116
Effective search space: 75026380
Effective search space used: 75026380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.4 bits)