HHsearch results for GI: 254780257 and protein with PDBid: 3a1p_B
>3a1p_B 30S ribosomal protein S19; RIMM N-terminal domain, PRC-barrel domain, beta barrels, ribosome, 30S ribosomal subunit, ribosome biogenesis; 2.30A {Thermus thermophilus} PDB: 1fka_S 1gix_V* 1hnw_S* 1hnx_S* 1hnz_S* 1hr0_S 1ibk_S* 1ibl_S* 1ibm_S 1jgo_V* 1jgp_V* 1jgq_V* 1ml5_V* 1xmo_S* 1xmq_S* 1xnq_S* 1xnr_S* 1yl4_V 2b64_S* 2b9m_S* ...
Probab=100.00 E-value=1.7e-42 Score=263.09 Aligned_cols=92 Identities=48% Similarity=0.911 Sum_probs=88.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 97787767562589999999862168983598750374781022264899970862689998525110101253364363
Q gi|254780257|r 1 MARSVRKGPFVTKSLLKKVSQARDSGGRGVVRVWCRNCDIMPQFIGLTFGVYNGRKHVPVSVSEEMVGFKLGDFAPTRHC 80 (92)
Q Consensus 1 MsRS~~Kgpfv~~~L~~ki~~~~~~~~~~~IkT~sR~s~IlP~~vg~~i~VyNGk~f~~v~I~~~MVGhklGEFa~TRk~ 80 (92)
||||+|||||++++|++++.+++..+.+++|+||||+|+|+|+|||++|+||||++|++|+|+||||||||||||+||++
T Consensus 1 M~RS~~Kgpfv~~~Ll~Ki~~~~~~~~~~~IkT~sR~s~IlP~~VG~~~~VyNGk~fv~v~I~~eMvGhklGEFa~TRk~ 80 (93)
T 3a1p_B 1 MPRSLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTY 80 (93)
T ss_dssp --------CCCCHHHHHHHHHHHHHTCCCCEEECCSSSBCCGGGTTCEEEEECSSSEEEEECCGGGTTSBGGGGCCCSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCEECHHHCCCEEEEECCCEEEEEEECCCCCCEEEECCCCCCCC
T ss_conf 98655548371789999999987427996457705788988688686898971872687885667225245512356366
Q ss_pred CCCCCCCCCCCC
Q ss_conf 576666531259
Q gi|254780257|r 81 PGHGSDKKAKRK 92 (92)
Q Consensus 81 ~~H~~~kk~k~k 92 (92)
+.|++++++.+|
T Consensus 81 ~~H~~~~k~~~k 92 (93)
T 3a1p_B 81 RGHGKEAKATKK 92 (93)
T ss_dssp CCTTGGGCBCCC
T ss_pred CCCCCCCCCCCC
T ss_conf 646889866567