Query gi|254780257|ref|YP_003064670.1| SSU ribosomal protein S19P [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 92
No_of_seqs 105 out of 1230
Neff 4.8
Searched_HMMs 13730
Date Tue May 24 06:37:40 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780257.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2uubs1 d.28.1.1 (S:2-81) Ribo 100.0 4.7E-38 3.4E-42 236.3 8.3 80 2-81 1-80 (80)
2 d2gy9s1 d.28.1.1 (S:2-80) Ribo 100.0 5.7E-38 4.1E-42 235.8 5.8 79 3-81 1-79 (79)
3 d1mlaa1 c.19.1.1 (A:3-127,A:19 32.2 3.3 0.00024 19.6 -0.7 14 62-75 81-95 (235)
4 d1mg7a2 d.58.26.6 (A:188-380) 16.0 22 0.0016 14.9 0.9 55 4-59 125-179 (193)
5 d1roca_ b.1.22.1 (A:) Anti-sil 15.0 36 0.0026 13.7 1.8 29 37-65 81-117 (155)
6 d1nm2a1 c.19.1.1 (A:0-133,A:19 14.8 13 0.00092 16.3 -0.6 14 62-75 89-103 (253)
7 d2gtlo1 b.61.7.1 (O:101-222) E 13.5 40 0.0029 13.4 1.7 44 36-79 74-121 (122)
8 d1nj8a2 d.68.5.1 (A:394-455) C 9.3 50 0.0036 12.9 1.0 12 50-61 48-59 (62)
9 d1we3o_ b.35.1.1 (O:) Chaperon 6.2 79 0.0058 11.7 2.0 24 36-60 63-86 (96)
10 d1td6a_ a.234.1.1 (A:) Hypothe 6.0 81 0.0059 11.6 2.9 23 41-63 165-187 (286)
No 1
>d2uubs1 d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=4.7e-38 Score=236.28 Aligned_cols=80 Identities=46% Similarity=0.892 Sum_probs=77.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 77877675625899999998621689835987503747810222648999708626899985251101012533643635
Q gi|254780257|r 2 ARSVRKGPFVTKSLLKKVSQARDSGGRGVVRVWCRNCDIMPQFIGLTFGVYNGRKHVPVSVSEEMVGFKLGDFAPTRHCP 81 (92)
Q Consensus 2 sRS~~Kgpfv~~~L~~ki~~~~~~~~~~~IkT~sR~s~IlP~~vg~~i~VyNGk~f~~v~I~~~MVGhklGEFa~TRk~~ 81 (92)
.||+|||||++++|++++.+++..+.+++|+||||+|+|+|+|||++|+|||||+|++|+|+||||||||||||+||+|.
T Consensus 1 ~RS~~Kgpfv~~~Llkki~~~~~~~~k~~IkT~sR~s~IlP~~VG~~~~VyNGk~fv~v~It~eMVGhklGEFa~TR~fr 80 (80)
T d2uubs1 1 PRSLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYR 80 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHTTTSSCCCSEEEECCSSSBCCGGGTTCEEEEECSSCEEEEECCGGGTTSBSGGGSCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCEECHHHCCEEEEEEECCEEEEEEECCCCCCCEEECCCCCCCCC
T ss_conf 98765584703899999999770388875768516668066781649999738736768844471350000455513279
No 2
>d2gy9s1 d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=5.7e-38 Score=235.80 Aligned_cols=79 Identities=56% Similarity=0.960 Sum_probs=77.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 7877675625899999998621689835987503747810222648999708626899985251101012533643635
Q gi|254780257|r 3 RSVRKGPFVTKSLLKKVSQARDSGGRGVVRVWCRNCDIMPQFIGLTFGVYNGRKHVPVSVSEEMVGFKLGDFAPTRHCP 81 (92)
Q Consensus 3 RS~~Kgpfv~~~L~~ki~~~~~~~~~~~IkT~sR~s~IlP~~vg~~i~VyNGk~f~~v~I~~~MVGhklGEFa~TRk~~ 81 (92)
||+|||||++++|+++++++..++.+++|+||||+|+|+|+|||++|+|||||+|++|+|+||||||||||||+||+|+
T Consensus 1 RS~~KGpfv~~~Llkki~k~~~~~~~~~IkT~sR~s~IlP~~VG~~i~VyNGk~fv~v~It~eMVGhklGEFa~TR~fr 79 (79)
T d2gy9s1 1 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYR 79 (79)
T ss_dssp CCCTTCCCCCTTTTSHHHHGGGGSCCSCEEESCTTSBCCGGGTTCEEEEECSSSEEEEECCGGGTTSBGGGGSCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHCCEEEEEECCEEEEEEECCCCCCEEEECCCCCCCCC
T ss_conf 9875573635889999999873478874788824552284774848999958706878844572350132323411279
No 3
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of malonyl-CoA ACP transacylase FabD {Escherichia coli [TaxId: 562]}
Probab=32.23 E-value=3.3 Score=19.62 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=10.6
Q ss_pred ECCCC-CCCCCCCCC
Q ss_conf 85251-101012533
Q gi|254780257|r 62 VSEEM-VGFKLGDFA 75 (92)
Q Consensus 62 I~~~M-VGhklGEFa 75 (92)
+.|++ +||-||||+
T Consensus 81 ~~p~~v~GhSlGE~a 95 (235)
T d1mlaa1 81 KAPAMMAGHSLGEYS 95 (235)
T ss_dssp CCCSEEEESTHHHHH
T ss_pred CCCEEEEECCCHHHH
T ss_conf 973465403312899
No 4
>d1mg7a2 d.58.26.6 (A:188-380) Early switch protein XOL-1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=16.01 E-value=22 Score=14.90 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=29.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCEECCCCCCCEEEEEECCCEEE
Q ss_conf 87767562589999999862168983598750374781022264899970862689
Q gi|254780257|r 4 SVRKGPFVTKSLLKKVSQARDSGGRGVVRVWCRNCDIMPQFIGLTFGVYNGRKHVP 59 (92)
Q Consensus 4 S~~Kgpfv~~~L~~ki~~~~~~~~~~~IkT~sR~s~IlP~~vg~~i~VyNGk~f~~ 59 (92)
.++|+.|.+.+|++.|.++.....++.|---|= -..-|.--...+..-||++|-|
T Consensus 125 vLKK~~F~~deLik~iS~sIa~~sr~svtqIsF-nLLqpgrGA~l~~~~~~R~~dP 179 (193)
T d1mg7a2 125 ALKKDSFFDDELIEKIAIAIATESRQSVSSVSF-DLLKLGPGASLVTLANSRRFEP 179 (193)
T ss_dssp EEETTGGGCHHHHHHHHHHHHHHCSSCCCEEEE-EEECBCBCCEECCTTTGGGSCC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEE-EEECCCCCCEEEECCCCCCCCC
T ss_conf 995473132689999999988762088337988-2125678833442244543587
No 5
>d1roca_ b.1.22.1 (A:) Anti-silencing protein 1, ASF1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.98 E-value=36 Score=13.65 Aligned_cols=29 Identities=31% Similarity=0.699 Sum_probs=19.2
Q ss_pred CCEECC--CCCCCEE----EEEECCCEEEE--EECCC
Q ss_conf 747810--2226489----99708626899--98525
Q gi|254780257|r 37 NCDIMP--QFIGLTF----GVYNGRKHVPV--SVSEE 65 (92)
Q Consensus 37 ~s~IlP--~~vg~~i----~VyNGk~f~~v--~I~~~ 65 (92)
+..-+| +.+|.|+ .-|+|++|++| ++..+
T Consensus 81 d~~kIP~~dilGvTvillt~~Y~~qEFiRVGYYVnn~ 117 (155)
T d1roca_ 81 SAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNE 117 (155)
T ss_dssp CGGGCCTHHHHSCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred CHHHCCHHHCCCCEEEEEEEEECCEEEEEEEEEECCC
T ss_conf 9213983454540699999998882889988898341
No 6
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of malonyl-CoA ACP transacylase FabD {Streptomyces coelicolor A3(2) [TaxId: 100226]}
Probab=14.78 E-value=13 Score=16.26 Aligned_cols=14 Identities=14% Similarity=0.527 Sum_probs=10.3
Q ss_pred ECC-CCCCCCCCCCC
Q ss_conf 852-51101012533
Q gi|254780257|r 62 VSE-EMVGFKLGDFA 75 (92)
Q Consensus 62 I~~-~MVGhklGEFa 75 (92)
|+| -++||-|||++
T Consensus 89 v~P~~v~GHSlGE~a 103 (253)
T d1nm2a1 89 FTPGAVAGHSVGEIT 103 (253)
T ss_dssp CCCSEEEESTTHHHH
T ss_pred CCCCEEECCCCCHHH
T ss_conf 165543337888899
No 7
>d2gtlo1 b.61.7.1 (O:101-222) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}
Probab=13.54 E-value=40 Score=13.40 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=29.6
Q ss_pred CCCEECCCCCCC--EEEEEECCCEEEE--EECCCCCCCCCCCCCCCCC
Q ss_conf 374781022264--8999708626899--9852511010125336436
Q gi|254780257|r 36 RNCDIMPQFIGL--TFGVYNGRKHVPV--SVSEEMVGFKLGDFAPTRH 79 (92)
Q Consensus 36 R~s~IlP~~vg~--~i~VyNGk~f~~v--~I~~~MVGhklGEFa~TRk 79 (92)
|..++.|.=-+. .+...+|-.+... +|.-+|.|+.-|||..+|+
T Consensus 74 ~~L~l~pp~~dgLg~vC~F~g~d~drc~g~iv~~~s~~~Ca~f~~~R~ 121 (122)
T d2gtlo1 74 HRLTIHPPEEDGLGLVGEFDGYNFDRFVGHIVHELSEEVCAEFIFHRK 121 (122)
T ss_dssp TEEEECCSSTTTEEEEEEECSSCCSEEEEEEEETTTTEEEEEEEEEEC
T ss_pred EEEEECCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCEEEEEEEC
T ss_conf 089973998895899999748888756899997416773037999963
No 8
>d1nj8a2 d.68.5.1 (A:394-455) C-terminal domain of ProRS {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Probab=9.32 E-value=50 Score=12.85 Aligned_cols=12 Identities=25% Similarity=0.587 Sum_probs=9.6
Q ss_pred EEEECCCEEEEE
Q ss_conf 997086268999
Q gi|254780257|r 50 GVYNGRKHVPVS 61 (92)
Q Consensus 50 ~VyNGk~f~~v~ 61 (92)
.-|+||+|+.|-
T Consensus 48 T~Y~Gk~YIsiA 59 (62)
T d1nj8a2 48 TEYKGNKYIAIA 59 (62)
T ss_dssp EECSSSEEEEEE
T ss_pred EEECCCEEEEEE
T ss_conf 256583678987
No 9
>d1we3o_ b.35.1.1 (O:) Chaperonin-10 (GroES) {Thermus thermophilus [TaxId: 274]}
Probab=6.16 E-value=79 Score=11.70 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=15.6
Q ss_pred CCCEECCCCCCCEEEEEECCCEEEE
Q ss_conf 3747810222648999708626899
Q gi|254780257|r 36 RNCDIMPQFIGLTFGVYNGRKHVPV 60 (92)
Q Consensus 36 R~s~IlP~~vg~~i~VyNGk~f~~v 60 (92)
=|.+++|.+-|..|. |||++|.=+
T Consensus 63 GD~Vl~~~~~g~~v~-~~g~~y~ii 86 (96)
T d1we3o_ 63 GDIVVFAKYGGTEIE-IDGEEYVIL 86 (96)
T ss_dssp TCEEEECTTCSEEEE-CSSCEEEEE
T ss_pred CCEEEECCCCCCEEE-ECCEEEEEE
T ss_conf 899998467873899-999999999
No 10
>d1td6a_ a.234.1.1 (A:) Hypothetical protein MPN330 {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=5.96 E-value=81 Score=11.64 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=18.6
Q ss_pred CCCCCCCEEEEEECCCEEEEEEC
Q ss_conf 10222648999708626899985
Q gi|254780257|r 41 MPQFIGLTFGVYNGRKHVPVSVS 63 (92)
Q Consensus 41 lP~~vg~~i~VyNGk~f~~v~I~ 63 (92)
+|.++|..|.+||.+-=....|+
T Consensus 165 ip~f~~~~feyyNsklkQ~Ftit 187 (286)
T d1td6a_ 165 IPGFQGEQVEYFNSKLKQKFTLT 187 (286)
T ss_dssp CGGGTTCEEEEEETTTTEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHEEEE
T ss_conf 89766722779867655526875
Done!