RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780257|ref|YP_003064670.1| SSU ribosomal protein S19P [Candidatus Liberibacter asiaticus str. psy62] (92 letters) >3i1m_S 30S ribosomal protein S19; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_S* 3e1a_L 3e1c_L 1vs5_S 3i1o_S 3i1q_S 3i1s_S 3i1z_S 3i21_S 2qal_S* 1p6g_S 1p87_S 2aw7_S 2avy_S 2i2u_S 2i2p_S* 2qan_S* 2qb9_S* 2qbb_S* 2qbd_S ... (S:) Length = 92 Score = 118 bits (297), Expect = 3e-28 Identities = 53/92 (57%), Positives = 67/92 (72%) Query: 1 MARSVRKGPFVTKSLLKKVSQARDSGGRGVVRVWCRNCDIMPQFIGLTFGVYNGRKHVPV 60 M RS++KGPF+ LLKKV +A +SG + +R W R I P IGLT V+NGR+HVPV Sbjct: 1 MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPV 60 Query: 61 SVSEEMVGFKLGDFAPTRHCPGHGSDKKAKRK 92 V++EMVG KLG+FAPTR GH +DKKAK+K Sbjct: 61 FVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK 92 >2zkq_s 40S ribosomal protein S15E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (s:) Length = 145 Score = 104 bits (261), Expect = 4e-24 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Query: 1 MARSVRKGPFVTKSLLKKVSQARDSGGRG-VVRVWCRNCDIMPQFIGLTFGVYNGRKHVP 59 + R +R+ L+K + + VV+ R+ I+P+ +G GVYNG+ Sbjct: 45 LNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQ 104 Query: 60 VSVSEEMVGFKLGDFAPTRHCPGHGS-DKKAKRK 92 V + EM+G LG+F+ T HG A Sbjct: 105 VEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHS 138 >1s1h_S 40S ribosomal protein S15; 80S ribosome, 40S ribosomal subunit, EEF2, tRNA translocation, sordarin, cryo-EM; 11.70A {Saccharomyces cerevisiae} (S:) Length = 80 Score = 94.5 bits (235), Expect = 5e-21 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Query: 3 RSVRKGPFVTKSLL-KKVSQARDSGGRGVVRVWCRNCDIMPQFIGLTFGVYNGRKHVPVS 61 R + P L A ++ VR RN I+P+ IG G+YNG+ V Sbjct: 1 RGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVE 60 Query: 62 VSEEMVGFKLGDFAPTR 78 + EM+G LG+F+ T Sbjct: 61 IRPEMLGHYLGEFSITY 77 >3bbn_S Ribosomal protein S19; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (S:26-92) Length = 67 Score = 91.2 bits (227), Expect = 4e-20 Identities = 25/67 (37%), Positives = 41/67 (61%) Query: 26 GGRGVVRVWCRNCDIMPQFIGLTFGVYNGRKHVPVSVSEEMVGFKLGDFAPTRHCPGHGS 85 + ++ W R I+P IG T ++NGR+H+P+ +++ MVG KLG+FAPT + GH Sbjct: 1 AEKEIIVTWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTLNFRGHAK 60 Query: 86 DKKAKRK 92 + R+ Sbjct: 61 NDNKSRR 67 >2vqe_S 30S ribosomal protein S19; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (S:27-93) Length = 67 Score = 91.2 bits (227), Expect = 5e-20 Identities = 32/63 (50%), Positives = 45/63 (71%) Query: 30 VVRVWCRNCDIMPQFIGLTFGVYNGRKHVPVSVSEEMVGFKLGDFAPTRHCPGHGSDKKA 89 +++ W R I+P+ +G T VYNG++HVPV ++E MVG KLG+FAPTR GHG + KA Sbjct: 4 LIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRGHGKEAKA 63 Query: 90 KRK 92 +K Sbjct: 64 TKK 66 >3jyv_S 40S ribosomal protein S15; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} (S:) Length = 71 Score = 87.1 bits (216), Expect = 7e-19 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 3 RSVRKGPFVT-KSLLKKVSQARDSGGRGVVRVWCRNCDIMPQFIGLTFGVYNGRKHVPVS 61 R + P K L A ++ VR RN I+P+ IG G+YNG+ V Sbjct: 1 RGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVE 60 Query: 62 VSEEMVGFKLG 72 + EM+G LG Sbjct: 61 IRPEMLGHYLG 71 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.323 0.139 0.437 Gapped Lambda K H 0.267 0.0669 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 726,554 Number of extensions: 28703 Number of successful extensions: 51 Number of sequences better than 10.0: 1 Number of HSP's gapped: 48 Number of HSP's successfully gapped: 6 Length of query: 92 Length of database: 4,956,049 Length adjustment: 53 Effective length of query: 39 Effective length of database: 3,164,384 Effective search space: 123410976 Effective search space used: 123410976 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 50 (23.2 bits)