RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780257|ref|YP_003064670.1| SSU ribosomal protein S19P
[Candidatus Liberibacter asiaticus str. psy62]
         (92 letters)



>3i1m_S 30S ribosomal protein S19; ribosome structure, protein-RNA
          complex, ribonucleoprotein, ribosomal protein,
          RNA-binding, rRNA-binding, antibiotic resistance; 3.19A
          {Escherichia coli k-12} PDB: 1vs7_S* 3e1a_L 3e1c_L
          1vs5_S 3i1o_S 3i1q_S 3i1s_S 3i1z_S 3i21_S 2qal_S*
          1p6g_S 1p87_S 2aw7_S 2avy_S 2i2u_S 2i2p_S* 2qan_S*
          2qb9_S* 2qbb_S* 2qbd_S ... (S:)
          Length = 92

 Score =  118 bits (297), Expect = 3e-28
 Identities = 53/92 (57%), Positives = 67/92 (72%)

Query: 1  MARSVRKGPFVTKSLLKKVSQARDSGGRGVVRVWCRNCDIMPQFIGLTFGVYNGRKHVPV 60
          M RS++KGPF+   LLKKV +A +SG +  +R W R   I P  IGLT  V+NGR+HVPV
Sbjct: 1  MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPV 60

Query: 61 SVSEEMVGFKLGDFAPTRHCPGHGSDKKAKRK 92
           V++EMVG KLG+FAPTR   GH +DKKAK+K
Sbjct: 61 FVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK 92


>2zkq_s 40S ribosomal protein S15E; protein-RNA complex, 40S
           ribosomal subunit, ribosomal protein/RNA complex; 8.70A
           {Canis familiaris} (s:)
          Length = 145

 Score =  104 bits (261), Expect = 4e-24
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 2/94 (2%)

Query: 1   MARSVRKGPFVTKSLLKKVSQARDSGGRG-VVRVWCRNCDIMPQFIGLTFGVYNGRKHVP 59
           + R +R+        L+K  +      +  VV+   R+  I+P+ +G   GVYNG+    
Sbjct: 45  LNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQ 104

Query: 60  VSVSEEMVGFKLGDFAPTRHCPGHGS-DKKAKRK 92
           V +  EM+G  LG+F+ T     HG     A   
Sbjct: 105 VEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHS 138


>1s1h_S 40S ribosomal protein S15; 80S ribosome, 40S ribosomal
          subunit, EEF2, tRNA translocation, sordarin, cryo-EM;
          11.70A {Saccharomyces cerevisiae} (S:)
          Length = 80

 Score = 94.5 bits (235), Expect = 5e-21
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 3  RSVRKGPFVTKSLL-KKVSQARDSGGRGVVRVWCRNCDIMPQFIGLTFGVYNGRKHVPVS 61
          R +   P      L      A ++     VR   RN  I+P+ IG   G+YNG+    V 
Sbjct: 1  RGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVE 60

Query: 62 VSEEMVGFKLGDFAPTR 78
          +  EM+G  LG+F+ T 
Sbjct: 61 IRPEMLGHYLGEFSITY 77


>3bbn_S Ribosomal protein S19; small ribosomal subunit, spinach
          chloroplast ribosome, ribonucleoprotein particle,
          macromolecular complex; 9.40A {Spinacea oleracea}
          (S:26-92)
          Length = 67

 Score = 91.2 bits (227), Expect = 4e-20
 Identities = 25/67 (37%), Positives = 41/67 (61%)

Query: 26 GGRGVVRVWCRNCDIMPQFIGLTFGVYNGRKHVPVSVSEEMVGFKLGDFAPTRHCPGHGS 85
            + ++  W R   I+P  IG T  ++NGR+H+P+ +++ MVG KLG+FAPT +  GH  
Sbjct: 1  AEKEIIVTWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTLNFRGHAK 60

Query: 86 DKKAKRK 92
          +    R+
Sbjct: 61 NDNKSRR 67


>2vqe_S 30S ribosomal protein S19; tRNA-binding, rRNA-binding,
          metal-binding, zinc-finger, translation; HET: TM2 PAR;
          2.5A {Thermus thermophilus} (S:27-93)
          Length = 67

 Score = 91.2 bits (227), Expect = 5e-20
 Identities = 32/63 (50%), Positives = 45/63 (71%)

Query: 30 VVRVWCRNCDIMPQFIGLTFGVYNGRKHVPVSVSEEMVGFKLGDFAPTRHCPGHGSDKKA 89
          +++ W R   I+P+ +G T  VYNG++HVPV ++E MVG KLG+FAPTR   GHG + KA
Sbjct: 4  LIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRGHGKEAKA 63

Query: 90 KRK 92
           +K
Sbjct: 64 TKK 66


>3jyv_S 40S ribosomal protein S15; eukaryotic ribosome, RACK1
          protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG
          PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus}
          (S:)
          Length = 71

 Score = 87.1 bits (216), Expect = 7e-19
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 3  RSVRKGPFVT-KSLLKKVSQARDSGGRGVVRVWCRNCDIMPQFIGLTFGVYNGRKHVPVS 61
          R +   P    K L      A ++     VR   RN  I+P+ IG   G+YNG+    V 
Sbjct: 1  RGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVE 60

Query: 62 VSEEMVGFKLG 72
          +  EM+G  LG
Sbjct: 61 IRPEMLGHYLG 71


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.323    0.139    0.437 

Gapped
Lambda     K      H
   0.267   0.0669    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 726,554
Number of extensions: 28703
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 6
Length of query: 92
Length of database: 4,956,049
Length adjustment: 53
Effective length of query: 39
Effective length of database: 3,164,384
Effective search space: 123410976
Effective search space used: 123410976
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)