RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780257|ref|YP_003064670.1| SSU ribosomal protein S19P
[Candidatus Liberibacter asiaticus str. psy62]
         (92 letters)



>d2uubs1 d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus
          thermophilus [TaxId: 274]}
          Length = 80

 Score =  110 bits (276), Expect = 4e-26
 Identities = 37/76 (48%), Positives = 53/76 (69%)

Query: 3  RSVRKGPFVTKSLLKKVSQARDSGGRGVVRVWCRNCDIMPQFIGLTFGVYNGRKHVPVSV 62
          RS++KG FV   LL+KV +    G + +++ W R   I+P+ +G T  VYNG++HVPV +
Sbjct: 2  RSLKKGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYI 61

Query: 63 SEEMVGFKLGDFAPTR 78
          +E MVG KLG+FAPTR
Sbjct: 62 TENMVGHKLGEFAPTR 77


>d2gy9s1 d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherichia coli
          [TaxId: 562]}
          Length = 79

 Score =  107 bits (270), Expect = 2e-25
 Identities = 44/76 (57%), Positives = 56/76 (73%)

Query: 3  RSVRKGPFVTKSLLKKVSQARDSGGRGVVRVWCRNCDIMPQFIGLTFGVYNGRKHVPVSV 62
          RS++KGPF+   LLKKV +A +SG +  +R W R   I P  IGLT  V+NGR+HVPV V
Sbjct: 1  RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFV 60

Query: 63 SEEMVGFKLGDFAPTR 78
          ++EMVG KLG+FAPTR
Sbjct: 61 TDEMVGHKLGEFAPTR 76


>d2hi7b1 a.29.15.1 (B:14-162) Disulfide bond formation protein DsbB
           {Escherichia coli [TaxId: 562]}
          Length = 149

 Score = 25.4 bits (55), Expect = 1.4
 Identities = 4/24 (16%), Positives = 8/24 (33%)

Query: 30  VVRVWCRNCDIMPQFIGLTFGVYN 53
           V      + +    F+GL    + 
Sbjct: 110 VFVASGDSAERQWDFLGLEMPQWL 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.437 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 352,771
Number of extensions: 14267
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 7
Length of query: 92
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 36
Effective length of database: 1,638,716
Effective search space: 58993776
Effective search space used: 58993776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (21.9 bits)