HHsearch alignment for GI: 254780258 and conserved domain: CHL00052
>CHL00052 rpl2 ribosomal protein L2.
Probab=100.00 E-value=0 Score=848.87 Aligned_cols=271 Identities=47% Similarity=0.852 Sum_probs=263.4
Q ss_pred CCCEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCEEEE
Q ss_conf 97501158884105108704576416887222111554367-75889848788647875102687988633777604788
Q gi|254780258|r 1 MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKG-GRNNTGRVTMRFRGGGHKNRYRLVDFKRGEYGLEGVVK 79 (278)
Q Consensus 1 M~~k~~kP~Tp~~R~~~~~~~~~l~k~~p~K~L~~~~~~~~-GRNn~GrITvrhRGGGhKr~yR~IDf~r~~~~~~~~V~ 79 (278)
T Consensus 1 M~ik~~kP~Tp~~R~~~~~d~---~k~~p~k~L~~~~~~~~~GRNn~GrIT~RhrGGGhKr~yR~IDf~R~k~~i~~~V~ 77 (274)
T CHL00052 1 MAIRLYKTYTPGTRNRSVSSF---VKSNPRKNLIYGQHRCGKGRNNRGIITARHRGGGHKRLYRKIDFRRNKKDIYGRIV 77 (274)
T ss_pred CCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCEEEE
T ss_conf 984201798985686364464---46976601033335788888998678278507986437898761336689658999
Q ss_pred EEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCEEEEEEC
Q ss_conf 76415885258898414776346751645661045788366676757574110443574637762333036882588634
Q gi|254780258|r 80 RLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSA 159 (278)
Q Consensus 80 ~IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~i~~Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsA 159 (278)
T Consensus 78 ~IEYDPnRsa~IALi~y~dg~k~YIlAp~glkvGd~I~sg~~~-~ik~GN~lpL~~IP~Gt~IhNIE~~pG~Ggk~~RSA 156 (274)
T CHL00052 78 TIEYDPNRNAYICLIHYGDGEKRYILHPRGLIIGDTIVSGTEA-PIKIGNALPLTDIPLGTAIHNIEITPGKGGQLARAA 156 (274)
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCC-CCCCCCCHHHHHCCCCCEEEEEEECCCCCCEEEECC
T ss_conf 9884899996799998279988899803886579999869999-877746540754899887886651289986498749
Q ss_pred CCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 65189967508889999489758998567809998512553323001313441005779970123326874788888888
Q gi|254780258|r 160 GSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGK 239 (278)
Q Consensus 160 Gt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~~~~~~~gKAG~~Rwlg~RP~VRGvAMNpvDHPhGGGeGk 239 (278)
T Consensus 157 Gt~A~ii~k~~~~~~ikLPSGe~R~i~~~C~ATIG~VsN~~~~~~~lgKAGr~Rwlg~RP~VRGvAMNpvDHPhGGGeGk 236 (274)
T CHL00052 157 GAVAKLIAKEGKSVTLKLPSGEVRLISKNCSATIGQVGNVGVNNKSLGKAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGR 236 (274)
T ss_pred CCCEEEEEECCCEEEEECCCCCEEEECCCCEEEEEECCCHHHCCCEECCCCHHHHCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 98389999559989998389985898976959973532802315720357744517779843301048766888888777
Q ss_pred CCCCC-CCCCCCCEECCCCCCCC-CCCCCEEEEEECCC
Q ss_conf 88888-78878873437725488-88886149962346
Q gi|254780258|r 240 TSGGR-NPCSPWGKLTKGKRTRS-NKSTDVFIARSRHK 275 (278)
Q Consensus 240 t~~gr-~~~spwG~~~kg~kTr~-~k~~~~~i~~~r~~ 275 (278)
T Consensus 237 ~~~G~~~p~spwG~~~kG~kTR~~~k~s~~~i~~~rkk 274 (274)
T CHL00052 237 APIGRKKPVTPWGKPALGRRTRKRKKYSDNLILRRRKK 274 (274)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 98989897388854678862688888777568651479