HHsearch alignment for GI: 254780258 and conserved domain: CHL00052

>CHL00052 rpl2 ribosomal protein L2.
Probab=100.00  E-value=0  Score=848.87  Aligned_cols=271  Identities=47%  Similarity=0.852  Sum_probs=263.4

Q ss_pred             CCCEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCEEEE
Q ss_conf             97501158884105108704576416887222111554367-75889848788647875102687988633777604788
Q gi|254780258|r    1 MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKG-GRNNTGRVTMRFRGGGHKNRYRLVDFKRGEYGLEGVVK   79 (278)
Q Consensus         1 M~~k~~kP~Tp~~R~~~~~~~~~l~k~~p~K~L~~~~~~~~-GRNn~GrITvrhRGGGhKr~yR~IDf~r~~~~~~~~V~   79 (278)
T Consensus         1 M~ik~~kP~Tp~~R~~~~~d~---~k~~p~k~L~~~~~~~~~GRNn~GrIT~RhrGGGhKr~yR~IDf~R~k~~i~~~V~   77 (274)
T CHL00052          1 MAIRLYKTYTPGTRNRSVSSF---VKSNPRKNLIYGQHRCGKGRNNRGIITARHRGGGHKRLYRKIDFRRNKKDIYGRIV   77 (274)
T ss_pred             CCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCCEEEE
T ss_conf             984201798985686364464---46976601033335788888998678278507986437898761336689658999


Q ss_pred             EEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCEEEEEEC
Q ss_conf             76415885258898414776346751645661045788366676757574110443574637762333036882588634
Q gi|254780258|r   80 RLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSA  159 (278)
Q Consensus        80 ~IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~i~~Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsA  159 (278)
T Consensus        78 ~IEYDPnRsa~IALi~y~dg~k~YIlAp~glkvGd~I~sg~~~-~ik~GN~lpL~~IP~Gt~IhNIE~~pG~Ggk~~RSA  156 (274)
T CHL00052         78 TIEYDPNRNAYICLIHYGDGEKRYILHPRGLIIGDTIVSGTEA-PIKIGNALPLTDIPLGTAIHNIEITPGKGGQLARAA  156 (274)
T ss_pred             EEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCEEEECCCC-CCCCCCCHHHHHCCCCCEEEEEEECCCCCCEEEECC
T ss_conf             9884899996799998279988899803886579999869999-877746540754899887886651289986498749


Q ss_pred             CCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             65189967508889999489758998567809998512553323001313441005779970123326874788888888
Q gi|254780258|r  160 GSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGK  239 (278)
Q Consensus       160 Gt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~~~~~~~gKAG~~Rwlg~RP~VRGvAMNpvDHPhGGGeGk  239 (278)
T Consensus       157 Gt~A~ii~k~~~~~~ikLPSGe~R~i~~~C~ATIG~VsN~~~~~~~lgKAGr~Rwlg~RP~VRGvAMNpvDHPhGGGeGk  236 (274)
T CHL00052        157 GAVAKLIAKEGKSVTLKLPSGEVRLISKNCSATIGQVGNVGVNNKSLGKAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGR  236 (274)
T ss_pred             CCCEEEEEECCCEEEEECCCCCEEEECCCCEEEEEECCCHHHCCCEECCCCHHHHCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf             98389999559989998389985898976959973532802315720357744517779843301048766888888777


Q ss_pred             CCCCC-CCCCCCCEECCCCCCCC-CCCCCEEEEEECCC
Q ss_conf             88888-78878873437725488-88886149962346
Q gi|254780258|r  240 TSGGR-NPCSPWGKLTKGKRTRS-NKSTDVFIARSRHK  275 (278)
Q Consensus       240 t~~gr-~~~spwG~~~kg~kTr~-~k~~~~~i~~~r~~  275 (278)
T Consensus       237 ~~~G~~~p~spwG~~~kG~kTR~~~k~s~~~i~~~rkk  274 (274)
T CHL00052        237 APIGRKKPVTPWGKPALGRRTRKRKKYSDNLILRRRKK  274 (274)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf             98989897388854678862688888777568651479