HHsearch alignment for GI: 254780258 and conserved domain: COG0090
>COG0090 RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=788.51 Aligned_cols=274 Identities=58% Similarity=0.956 Sum_probs=270.0
Q ss_pred CCCEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCEEEEE
Q ss_conf 97501158884105108704576416887222111554367758898487886478751026879886337776047887
Q gi|254780258|r 1 MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKNRYRLVDFKRGEYGLEGVVKR 80 (278)
Q Consensus 1 M~~k~~kP~Tp~~R~~~~~~~~~l~k~~p~K~L~~~~~~~~GRNn~GrITvrhRGGGhKr~yR~IDf~r~~~~~~~~V~~ 80 (278)
T Consensus 1 m~ik~~kp~t~g~r~~~~~~~~~~~~~~p~k~l~~~~~~~~gR~n~G~iT~R~~ggghK~~yr~idfkr~k~~i~g~V~~ 80 (275)
T COG0090 1 MAIKKYKPTTPGRRHMVVVDFAELTKGKPEKSLMGKLIKSQGRNNRGRITVRHRGGGHKRRYRLIDFKRNKDGIPGKVED 80 (275)
T ss_pred CCCCEECCCCCCCCEEEEECCHHHHCCCCCHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCEECCCCCCCCCCCCEEEEE
T ss_conf 97312036998731267760101105985245311020025788898704885788844415645645466786679999
Q ss_pred EEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCEEEEEECC
Q ss_conf 64158852588984147763467516456610457883666767575741104435746377623330368825886346
Q gi|254780258|r 81 LEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAG 160 (278)
Q Consensus 81 IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~i~~Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsAG 160 (278)
T Consensus 81 IeyDP~RsA~IAlv~y~dGek~yilAp~Gl~vGd~I~~G~~a-~ik~GN~lpL~~IP~Gt~VhNVE~~pG~GGq~aRSaG 159 (275)
T COG0090 81 IEYDPNRSAPIALVVYEDGEKRYILAPEGLKVGDVIESGKDA-DIKPGNALPLGNIPEGTIVHNVELKPGDGGQLARSAG 159 (275)
T ss_pred EEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCC-CCCCCCEEEECCCCCCCEEEEEEECCCCCCEEEEECC
T ss_conf 888999986258998148878899744765458889957888-8677645241357787568635603588842887078
Q ss_pred CEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf 51899675088899994897589985678099985125533230013134410057799701233268747888888888
Q gi|254780258|r 161 SYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGKT 240 (278)
Q Consensus 161 t~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~~~~~~~gKAG~~Rwlg~RP~VRGvAMNpvDHPhGGGeGkt 240 (278)
T Consensus 160 tyA~vv~~~~~y~~vrLpSGe~r~v~~~CrATIGvV~n~~~~~~~lgKAGr~r~~g~rPtVRGvAMNpvDHPHGGGeg~~ 239 (275)
T COG0090 160 TYAQVVGKEGNYVIVRLPSGEMRKVLSECRATIGVVANGGHILKPLGKAGRARHKGKRPTVRGVAMNPVDHPHGGGEGQH 239 (275)
T ss_pred CEEEEEECCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCCCCEECCCCHHCCCCCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf 55899972588799988888857545010189988617863125000021310874178355552388768878878888
Q ss_pred CCCCCCCCCCCEECCCCCCCC-CCCCCEEEEEECCC
Q ss_conf 888878878873437725488-88886149962346
Q gi|254780258|r 241 SGGRNPCSPWGKLTKGKRTRS-NKSTDVFIARSRHK 275 (278)
Q Consensus 241 ~~gr~~~spwG~~~kg~kTr~-~k~~~~~i~~~r~~ 275 (278)
T Consensus 240 ~ggk~p~~pwg~~~~Gkktr~~~krt~~~ivrrr~~ 275 (275)
T COG0090 240 PGGKPPTVPWGKPTPGKKTRIAAKRTGKFIVRRRKK 275 (275)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 999899788988898641333334447633312579