HHsearch alignment for GI: 254780258 and conserved domain: COG0090

>COG0090 RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=788.51  Aligned_cols=274  Identities=58%  Similarity=0.956  Sum_probs=270.0

Q ss_pred             CCCEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCEEEEE
Q ss_conf             97501158884105108704576416887222111554367758898487886478751026879886337776047887
Q gi|254780258|r    1 MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKNRYRLVDFKRGEYGLEGVVKR   80 (278)
Q Consensus         1 M~~k~~kP~Tp~~R~~~~~~~~~l~k~~p~K~L~~~~~~~~GRNn~GrITvrhRGGGhKr~yR~IDf~r~~~~~~~~V~~   80 (278)
T Consensus         1 m~ik~~kp~t~g~r~~~~~~~~~~~~~~p~k~l~~~~~~~~gR~n~G~iT~R~~ggghK~~yr~idfkr~k~~i~g~V~~   80 (275)
T COG0090           1 MAIKKYKPTTPGRRHMVVVDFAELTKGKPEKSLMGKLIKSQGRNNRGRITVRHRGGGHKRRYRLIDFKRNKDGIPGKVED   80 (275)
T ss_pred             CCCCEECCCCCCCCEEEEECCHHHHCCCCCHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCEECCCCCCCCCCCCEEEEE
T ss_conf             97312036998731267760101105985245311020025788898704885788844415645645466786679999


Q ss_pred             EEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCEEEEEECC
Q ss_conf             64158852588984147763467516456610457883666767575741104435746377623330368825886346
Q gi|254780258|r   81 LEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAG  160 (278)
Q Consensus        81 IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~i~~Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsAG  160 (278)
T Consensus        81 IeyDP~RsA~IAlv~y~dGek~yilAp~Gl~vGd~I~~G~~a-~ik~GN~lpL~~IP~Gt~VhNVE~~pG~GGq~aRSaG  159 (275)
T COG0090          81 IEYDPNRSAPIALVVYEDGEKRYILAPEGLKVGDVIESGKDA-DIKPGNALPLGNIPEGTIVHNVELKPGDGGQLARSAG  159 (275)
T ss_pred             EEECCCCCCCEEEEEECCCCEEEEECCCCCCCCCEEEECCCC-CCCCCCEEEECCCCCCCEEEEEEECCCCCCEEEEECC
T ss_conf             888999986258998148878899744765458889957888-8677645241357787568635603588842887078


Q ss_pred             CEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
Q ss_conf             51899675088899994897589985678099985125533230013134410057799701233268747888888888
Q gi|254780258|r  161 SYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGKT  240 (278)
Q Consensus       161 t~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~~~~~~~gKAG~~Rwlg~RP~VRGvAMNpvDHPhGGGeGkt  240 (278)
T Consensus       160 tyA~vv~~~~~y~~vrLpSGe~r~v~~~CrATIGvV~n~~~~~~~lgKAGr~r~~g~rPtVRGvAMNpvDHPHGGGeg~~  239 (275)
T COG0090         160 TYAQVVGKEGNYVIVRLPSGEMRKVLSECRATIGVVANGGHILKPLGKAGRARHKGKRPTVRGVAMNPVDHPHGGGEGQH  239 (275)
T ss_pred             CEEEEEECCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCCCCEECCCCHHCCCCCCCCCCEEECCCCCCCCCCCCCCC
T ss_conf             55899972588799988888857545010189988617863125000021310874178355552388768878878888


Q ss_pred             CCCCCCCCCCCEECCCCCCCC-CCCCCEEEEEECCC
Q ss_conf             888878878873437725488-88886149962346
Q gi|254780258|r  241 SGGRNPCSPWGKLTKGKRTRS-NKSTDVFIARSRHK  275 (278)
Q Consensus       241 ~~gr~~~spwG~~~kg~kTr~-~k~~~~~i~~~r~~  275 (278)
T Consensus       240 ~ggk~p~~pwg~~~~Gkktr~~~krt~~~ivrrr~~  275 (275)
T COG0090         240 PGGKPPTVPWGKPTPGKKTRIAAKRTGKFIVRRRKK  275 (275)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf             999899788988898641333334447633312579