HHsearch alignment of GI: 254780258 and MMDB domain: 2j01_D_49-276

>2j01_D (D:49-276) 50S ribosomal protein L2; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus}
Probab=100.00  E-value=0  Score=653.48  Aligned_cols=226  Identities=54%  Similarity=0.986  Sum_probs=219.6

Q ss_pred             EEEEEECCCCCCEEEEEEEEEC-CCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCC
Q ss_conf             8788647875102687988633-777604788764158852588984147763467516456610457883666767575
Q gi|254780258|r   49 VTMRFRGGGHKNRYRLVDFKRG-EYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVDVKP  127 (278)
Q Consensus        49 ITvrhRGGGhKr~yR~IDf~r~-~~~~~~~V~~IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~i~~  127 (278)
                      ||+|||||||||+||+|||+|. +.+++++|++|||||||||+||||.|+|++++|||||++|++||.|.++..+ ++.+
T Consensus         1 It~rhrggg~kr~yr~Id~~r~~~~~~~~~V~~I~ydp~Rsa~IAlv~~~~g~~~yIla~~g~~~Gd~I~~~~~~-~~~~   79 (228)
T 2j01_D            1 ITVRFRGGGHKRLYRIIDFKRWDKVGIPAKVAAIEYDPNRSARIALLHYVDGEKRYIIAPDGLQVGQQVVAGPDA-PIQV   79 (228)
T ss_dssp             BSSTTBCCCCCCCBCCCCCCCGGGTTCCEEEEECCCCTTCSSCEEEEEETTSCEEEEECCTTCCTTCEECBSSSS-CSST
T ss_pred             EEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCHHCCCCCEEECCCCC-CCCC
T ss_conf             879982698236778862000335687657899986266313579998079979999677110037245036756-6544


Q ss_pred             CCCHHHHHCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCCC
Q ss_conf             74110443574637762333036882588634651899675088899994897589985678099985125533230013
Q gi|254780258|r  128 GNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVNHA  207 (278)
Q Consensus       128 Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsAGt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~~~~~~~g  207 (278)
                      ||++||.+||+||+|||||+.||+||||||||||||+|++|++++++|||||||+++|+++|+||||+|||.+|.+++++
T Consensus        80 Gn~~pL~~iP~Gt~I~NIE~~pg~gg~~~RsAGt~a~ii~k~~~~~~ikLPSG~~k~i~~~c~AtiG~vsn~~~~~~~~g  159 (228)
T 2j01_D           80 GNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGREGDYVILRLPSGELRKVHGECYATVGAVGNADHKNIVLG  159 (228)
T ss_dssp             TCEEEGGGSCTTCEEESEESSTTSCEEESCSSSCCEEECCCBTTEEEEECTTSCEEEEETTSEEEESCCSCGGGGGCCCC
T ss_pred             CCCCCEEECCCCEEEEEEEECCCCCCEEEECCCCEEEEEEECCCEEEEEECCCCEEEEECCCCEEEEEECCHHHHCHHHC
T ss_conf             64111010567508764520137784464215631789986287589996587558722337468888646112110110


Q ss_pred             CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC-CCCCEEEEEECCC
Q ss_conf             1344100577997012332687478888888888888788788734377254888-8886149962346
Q gi|254780258|r  208 KAGRARWLGMRSHVRGVAMNPVDHPHGGGEGKTSGGRNPCSPWGKLTKGKRTRSN-KSTDVFIARSRHK  275 (278)
Q Consensus       208 KAG~~Rwlg~RP~VRGvAMNpvDHPhGGGeGkt~~gr~~~spwG~~~kg~kTr~~-k~~~~~i~~~r~~  275 (278)
                      |||++||||+||+||||||||||||||||||+++++++|+||||++++|++||+. |.+|++|+++|++
T Consensus       160 KAG~~r~~g~rP~VRGvAMNpvDHPhGGG~g~~~g~~~~vspwG~~~k~~~tr~~~r~~~~~i~~~r~~  228 (228)
T 2j01_D          160 KAGRSRWLGRRPHVRGAAMNPVDHPHGGGEGRAPRGRPPASPWGWQTKGLKTRKRRKPSSRFIIARRKK  228 (228)
T ss_dssp             SHHHHTTTTBCCCCCSSSSCTTTCSSCCSSSSCCCSSSCBCTTCCBCSSCCCSCTTSSCCSSEEC----
T ss_pred             CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf             046765467455466223588768989989897998679798887689865788998777568863679