HHsearch alignment of GI: 254780258 and MMDB domain: 2j01_D_49-276
>2j01_D (D:49-276) 50S ribosomal protein L2; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus}
Probab=100.00 E-value=0 Score=653.48 Aligned_cols=226 Identities=54% Similarity=0.986 Sum_probs=219.6
Q ss_pred EEEEEECCCCCCEEEEEEEEEC-CCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCC
Q ss_conf 8788647875102687988633-777604788764158852588984147763467516456610457883666767575
Q gi|254780258|r 49 VTMRFRGGGHKNRYRLVDFKRG-EYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVDVKP 127 (278)
Q Consensus 49 ITvrhRGGGhKr~yR~IDf~r~-~~~~~~~V~~IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~i~~ 127 (278)
||+|||||||||+||+|||+|. +.+++++|++|||||||||+||||.|+|++++|||||++|++||.|.++..+ ++.+
T Consensus 1 It~rhrggg~kr~yr~Id~~r~~~~~~~~~V~~I~ydp~Rsa~IAlv~~~~g~~~yIla~~g~~~Gd~I~~~~~~-~~~~ 79 (228)
T 2j01_D 1 ITVRFRGGGHKRLYRIIDFKRWDKVGIPAKVAAIEYDPNRSARIALLHYVDGEKRYIIAPDGLQVGQQVVAGPDA-PIQV 79 (228)
T ss_dssp BSSTTBCCCCCCCBCCCCCCCGGGTTCCEEEEECCCCTTCSSCEEEEEETTSCEEEEECCTTCCTTCEECBSSSS-CSST
T ss_pred EEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCHHCCCCCEEECCCCC-CCCC
T ss_conf 879982698236778862000335687657899986266313579998079979999677110037245036756-6544
Q ss_pred CCCHHHHHCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCCC
Q ss_conf 74110443574637762333036882588634651899675088899994897589985678099985125533230013
Q gi|254780258|r 128 GNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVNHA 207 (278)
Q Consensus 128 Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsAGt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~~~~~~~g 207 (278)
||++||.+||+||+|||||+.||+||||||||||||+|++|++++++|||||||+++|+++|+||||+|||.+|.+++++
T Consensus 80 Gn~~pL~~iP~Gt~I~NIE~~pg~gg~~~RsAGt~a~ii~k~~~~~~ikLPSG~~k~i~~~c~AtiG~vsn~~~~~~~~g 159 (228)
T 2j01_D 80 GNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGREGDYVILRLPSGELRKVHGECYATVGAVGNADHKNIVLG 159 (228)
T ss_dssp TCEEEGGGSCTTCEEESEESSTTSCEEESCSSSCCEEECCCBTTEEEEECTTSCEEEEETTSEEEESCCSCGGGGGCCCC
T ss_pred CCCCCEEECCCCEEEEEEEECCCCCCEEEECCCCEEEEEEECCCEEEEEECCCCEEEEECCCCEEEEEECCHHHHCHHHC
T ss_conf 64111010567508764520137784464215631789986287589996587558722337468888646112110110
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC-CCCCEEEEEECCC
Q ss_conf 1344100577997012332687478888888888888788788734377254888-8886149962346
Q gi|254780258|r 208 KAGRARWLGMRSHVRGVAMNPVDHPHGGGEGKTSGGRNPCSPWGKLTKGKRTRSN-KSTDVFIARSRHK 275 (278)
Q Consensus 208 KAG~~Rwlg~RP~VRGvAMNpvDHPhGGGeGkt~~gr~~~spwG~~~kg~kTr~~-k~~~~~i~~~r~~ 275 (278)
|||++||||+||+||||||||||||||||||+++++++|+||||++++|++||+. |.+|++|+++|++
T Consensus 160 KAG~~r~~g~rP~VRGvAMNpvDHPhGGG~g~~~g~~~~vspwG~~~k~~~tr~~~r~~~~~i~~~r~~ 228 (228)
T 2j01_D 160 KAGRSRWLGRRPHVRGAAMNPVDHPHGGGEGRAPRGRPPASPWGWQTKGLKTRKRRKPSSRFIIARRKK 228 (228)
T ss_dssp SHHHHTTTTBCCCCCSSSSCTTTCSSCCSSSSCCCSSSCBCTTCCBCSSCCCSCTTSSCCSSEEC----
T ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 046765467455466223588768989989897998679798887689865788998777568863679