HHsearch alignment of GI: 254780258 and MMDB domain: 2zkr_a_1-177
>2zkr_a (a:1-177) 60S ribosomal protein L8; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1i_B
Probab=100.00 E-value=0 Score=420.36 Aligned_cols=166 Identities=26% Similarity=0.464 Sum_probs=158.2
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCEEEEEEEECCCCEEEEEEEECCCCC-----EEEEECCCCC
Q ss_conf 55436775889848788647875102687988633777604788764158852588984147763-----4675164566
Q gi|254780258|r 36 GLCSKGGRNNTGRVTMRFRGGGHKNRYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGS-----LAYILAPQRL 110 (278)
Q Consensus 36 ~~~~~~GRNn~GrITvrhRGGGhKr~yR~IDf~r~~~~~~~~V~~IeYDPnRsa~IALv~~~~g~-----~~YIlAp~gl 110 (278)
.+++++||||+||||+|||||||| ||.|||+|++.+++++|++|||||||||+||||.|.||+ ++||+||+++
T Consensus 5 ~~~~~~GRn~~Grit~~hrggg~k--yr~id~~r~~~~~~~~V~~i~ydp~Rsa~Ialv~~~~g~~~~~~~~yi~a~~g~ 82 (177)
T 2zkr_a 5 IRGQRKGAGSVFRAHVKHRKGAAR--LRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGI 82 (177)
T ss_dssp CHHHHGGGCSTTSCCGGGCCCCCC--CCCCCTTTCTTCEEEEEEEEEEETTTTEEEEEEEESSCCSSSSSCCEECCBSSC
T ss_pred CCCCCCCCCCCCEECCCEECCCCC--CCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCEEEEECCCCC
T ss_conf 412256899897671200078764--574573003599328999999679998058999941675467627889767773
Q ss_pred CCCCEEEECCCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEE--CCCEEEEEECCCCEEEECCC
Q ss_conf 1045788366676757574110443574637762333036882588634651899675--08889999489758998567
Q gi|254780258|r 111 SVGDKVISSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVER--DRSRALLRLSSGEMRFVHSS 188 (278)
Q Consensus 111 ~vGd~I~s~~~~~~i~~Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsAGt~a~Ii~k--~~~~~~ikLPSGe~r~i~~~ 188 (278)
++||.|.++..+ ++++||++||.+||+||+|||||+.||+||||||||||||+|++| |+++++|||||||+++|+++
T Consensus 83 ~~G~~i~~~~~~-~~~~Gn~~pL~~iP~Gt~I~nIE~~pg~ggk~~RsAGt~a~ii~k~~~~~~~~ikLPSGe~k~i~~~ 161 (177)
T 2zkr_a 83 HTGQFVYCGKKA-QLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSA 161 (177)
T ss_dssp BTTCEEEESTTC-CSCTTCEEEGGGSCTTEEEESBCSSTTSCCCBSCSTTCCEEEEECCSSSSCEEEECTTSCEEEECTT
T ss_pred CCCCEECCCCCC-EEECCCHHHHHHCCCCCEEEEEEEECCCCCCEECCCCCEEEEEEECCCCCEEEEECCCCCEEECCCC
T ss_conf 203243146652-0201103346318864177437630147750201366259998850678779997688675701568
Q ss_pred CEEEEEEECCCCCCCC
Q ss_conf 8099985125533230
Q gi|254780258|r 189 CMASIGAVSNQDHSNV 204 (278)
Q Consensus 189 c~AtIG~vsN~~~~~~ 204 (278)
|+||||+|||.+|.++
T Consensus 162 c~AtiG~vsn~~~~~k 177 (177)
T 2zkr_a 162 NRAVVGVVAGGGRIDK 177 (177)
T ss_dssp CEEEESCBSCTTTTTS
T ss_pred CEEEEEEECCCCHHHH
T ss_conf 7089999538734322