Query gi|254780258|ref|YP_003064671.1| 50S ribosomal protein L2 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 278
No_of_seqs 160 out of 1455
Neff 4.8
Searched_HMMs 33803
Date Tue May 24 07:07:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780258.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2j01_D 50S ribosomal protein 100.0 0 0 653.5 15.4 226 49-275 1-228 (228)
2 >1vq8_A 50S ribosomal protein 100.0 0 0 427.2 9.5 166 38-204 2-168 (168)
3 >2zkr_a 60S ribosomal protein 100.0 0 0 420.4 9.6 166 36-204 5-177 (177)
4 >1rl2_A Protein (ribosomal pro 100.0 0 0 362.4 12.0 137 61-198 1-137 (137)
5 >3i1n_C 50S ribosomal protein 100.0 0 0 345.2 7.0 135 70-205 1-135 (145)
6 >3bbo_E Ribosomal protein L2; 100.0 0 0 356.3 -4.1 137 66-203 1-137 (137)
7 >2ftc_B Mitochondrial ribosoma 100.0 4.2E-38 1.2E-42 270.3 10.8 105 106-210 1-109 (109)
8 >3i1n_C 50S ribosomal protein 100.0 8.3E-39 2.5E-43 275.0 3.2 70 1-70 1-70 (99)
9 >1giy_D 50S ribosomal protein 100.0 1.4E-30 4.1E-35 220.8 10.2 83 118-201 2-84 (84)
10 >1giy_D 50S ribosomal protein 99.8 4.7E-20 1.4E-24 151.6 6.5 56 61-116 1-56 (56)
11 >3h41_A NLP/P60 family protein 83.4 3.2 9.4E-05 21.1 6.4 48 142-189 19-67 (77)
12 >1n0u_A EF-2, elongation facto 56.3 13 0.00039 17.1 5.1 34 74-107 26-64 (128)
13 >3d3r_A Hydrogenase assembly c 53.4 11 0.00032 17.7 2.7 47 67-118 19-68 (73)
14 >3da0_A Cleaved chimeric recep 51.2 16 0.00047 16.5 4.4 84 149-233 31-136 (136)
15 >1g8x_A Myosin II heavy chain 47.6 18 0.00054 16.2 4.3 30 159-188 46-75 (86)
16 >2rdo_7 EF-G, elongation facto 44.4 20 0.0006 15.8 5.4 72 74-146 4-88 (94)
17 >2qf4_A Cell shape determining 44.3 20 0.0006 15.8 3.0 50 86-142 12-66 (87)
18 >2h5e_A Peptide chain release 40.8 23 0.00068 15.5 3.0 13 76-88 23-35 (108)
19 >2hpu_A NOSL protein; alpha be 40.3 10 0.00031 17.7 0.9 28 206-235 148-175 (175)
20 >3gqb_A V-type ATP synthase al 37.9 25 0.00073 15.3 2.6 54 98-163 6-61 (77)
21 >2mys_A Myosin; muscle protein 36.1 27 0.0008 15.0 3.1 27 162-188 17-43 (57)
22 >2owo_A DNA ligase; protein/DN 30.7 4.3 0.00013 20.3 -2.3 93 75-168 4-122 (160)
23 >3kdf_A Replication protein A 29.6 34 0.001 14.3 3.5 55 138-200 21-77 (121)
24 >1oei_A Major prion protein; o 29.1 32 0.00095 14.5 2.0 20 230-254 6-25 (26)
25 >2awn_A Maltose/maltodextrin i 27.1 38 0.0011 14.0 2.7 23 163-185 8-30 (84)
26 >3ief_A TRNA (guanine-N(1)-)-m 26.8 17 0.0005 16.3 0.2 33 90-122 106-142 (168)
27 >1dar_A EF-G, elongation facto 23.1 45 0.0013 13.6 5.0 73 73-146 25-110 (135)
28 >1o9y_A HRCQ2; secretory prote 23.1 45 0.0013 13.6 2.3 48 121-168 32-79 (84)
29 >3ij3_A Cytosol aminopeptidase 22.1 47 0.0014 13.4 4.5 25 75-99 72-100 (325)
30 >3bu2_A Putative tRNA-binding 21.9 47 0.0014 13.4 5.9 53 66-118 1-54 (114)
31 >2cqa_A RUVB-like 2; TIP48, TI 21.3 49 0.0014 13.3 4.8 50 68-118 8-71 (95)
No 1
>>2j01_D 50S ribosomal protein L2; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (D:49-276)
Probab=100.00 E-value=0 Score=653.48 Aligned_cols=226 Identities=54% Similarity=0.986 Sum_probs=219.6
Q ss_pred EEEEEECCCCCCEEEEEEEEEC-CCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCC
Q ss_conf 8788647875102687988633-777604788764158852588984147763467516456610457883666767575
Q gi|254780258|r 49 VTMRFRGGGHKNRYRLVDFKRG-EYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVDVKP 127 (278)
Q Consensus 49 ITvrhRGGGhKr~yR~IDf~r~-~~~~~~~V~~IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~i~~ 127 (278)
||+|||||||||+||+|||+|. +.+++++|++|||||||||+||||.|+|++++|||||++|++||.|.++..+ ++.+
T Consensus 1 It~rhrggg~kr~yr~Id~~r~~~~~~~~~V~~I~ydp~Rsa~IAlv~~~~g~~~yIla~~g~~~Gd~I~~~~~~-~~~~ 79 (228)
T 2j01_D 1 ITVRFRGGGHKRLYRIIDFKRWDKVGIPAKVAAIEYDPNRSARIALLHYVDGEKRYIIAPDGLQVGQQVVAGPDA-PIQV 79 (228)
T ss_dssp BSSTTBCCCCCCCBCCCCCCCGGGTTCCEEEEECCCCTTCSSCEEEEEETTSCEEEEECCTTCCTTCEECBSSSS-CSST
T ss_pred EEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCHHCCCCCEEECCCCC-CCCC
T ss_conf 879982698236778862000335687657899986266313579998079979999677110037245036756-6544
Q ss_pred CCCHHHHHCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCCC
Q ss_conf 74110443574637762333036882588634651899675088899994897589985678099985125533230013
Q gi|254780258|r 128 GNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVNHA 207 (278)
Q Consensus 128 Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsAGt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~~~~~~~g 207 (278)
||++||.+||+||+|||||+.||+||||||||||||+|++|++++++|||||||+++|+++|+||||+|||.+|.+++++
T Consensus 80 Gn~~pL~~iP~Gt~I~NIE~~pg~gg~~~RsAGt~a~ii~k~~~~~~ikLPSG~~k~i~~~c~AtiG~vsn~~~~~~~~g 159 (228)
T 2j01_D 80 GNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGREGDYVILRLPSGELRKVHGECYATVGAVGNADHKNIVLG 159 (228)
T ss_dssp TCEEEGGGSCTTCEEESEESSTTSCEEESCSSSCCEEECCCBTTEEEEECTTSCEEEEETTSEEEESCCSCGGGGGCCCC
T ss_pred CCCCCEEECCCCEEEEEEEECCCCCCEEEECCCCEEEEEEECCCEEEEEECCCCEEEEECCCCEEEEEECCHHHHCHHHC
T ss_conf 64111010567508764520137784464215631789986287589996587558722337468888646112110110
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCC-CCCCEEEEEECCC
Q ss_conf 1344100577997012332687478888888888888788788734377254888-8886149962346
Q gi|254780258|r 208 KAGRARWLGMRSHVRGVAMNPVDHPHGGGEGKTSGGRNPCSPWGKLTKGKRTRSN-KSTDVFIARSRHK 275 (278)
Q Consensus 208 KAG~~Rwlg~RP~VRGvAMNpvDHPhGGGeGkt~~gr~~~spwG~~~kg~kTr~~-k~~~~~i~~~r~~ 275 (278)
|||++||||+||+||||||||||||||||||+++++++|+||||++++|++||+. |.+|++|+++|++
T Consensus 160 KAG~~r~~g~rP~VRGvAMNpvDHPhGGG~g~~~g~~~~vspwG~~~k~~~tr~~~r~~~~~i~~~r~~ 228 (228)
T 2j01_D 160 KAGRSRWLGRRPHVRGAAMNPVDHPHGGGEGRAPRGRPPASPWGWQTKGLKTRKRRKPSSRFIIARRKK 228 (228)
T ss_dssp SHHHHTTTTBCCCCCSSSSCTTTCSSCCSSSSCCCSSSCBCTTCCBCSSCCCSCTTSSCCSSEEC----
T ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 046765467455466223588768989989897998679798887689865788998777568863679
No 2
>>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (A:1-168)
Probab=100.00 E-value=0 Score=427.16 Aligned_cols=166 Identities=36% Similarity=0.580 Sum_probs=160.2
Q ss_pred CCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCC-CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEE
Q ss_conf 43677588984878864787510268798863377-76047887641588525889841477634675164566104578
Q gi|254780258|r 38 CSKGGRNNTGRVTMRFRGGGHKNRYRLVDFKRGEY-GLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKV 116 (278)
Q Consensus 38 ~~~~GRNn~GrITvrhRGGGhKr~yR~IDf~r~~~-~~~~~V~~IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I 116 (278)
.|++||||+||||+|||||||||+||+|||+|+.. .+.++|++|||||||||+||||.|.|++++|||||++|++||.|
T Consensus 2 gK~~grn~~Grit~~hrggghkr~~r~id~~r~~~~~~~g~V~~I~ydp~Rsa~ialv~~~~~~~~yila~~~~~~G~~i 81 (168)
T 1vq8_A 2 GRRIQGQRRGRGTSTFRAPSHRYKADLEHRKVEDGDVIAGTVVDIEHDPARSAPVAAVEFEDGDRRLILAPEGVGVGDEL 81 (168)
T ss_dssp CCCCHHHHHTTCCGGGSCCGGGCCCCCCCCCCCSSSCCEEEEEEEEEETTTTEEEEEEEETTSCEEEECCBTTCBTTCEE
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCCCCEE
T ss_conf 87555340799988365899442651235774446753479999898989982289999379787898567777367468
Q ss_pred EECCCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEE
Q ss_conf 83666767575741104435746377623330368825886346518996750888999948975899856780999851
Q gi|254780258|r 117 ISSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAV 196 (278)
Q Consensus 117 ~s~~~~~~i~~Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsAGt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~v 196 (278)
.++.++ ++++||++||.+||+||+|||||+.||+||+|||||||||+|++|++++++|||||||+++|+++|+||||+|
T Consensus 82 ~~~~~~-~~~~Gn~lpl~~iP~Gt~I~nIE~~pg~ggk~~RsAGt~a~ii~k~~~~v~ikLPSG~~k~i~~~c~AtIG~v 160 (168)
T 1vq8_A 82 QVGVSA-EIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHDRNVAVVKLPSGEMKRLDPQCRATIGVV 160 (168)
T ss_dssp EBSTTC-CSCTTCEEEGGGSCTTCEEESBCSSTTSCCCBSCSTTCCEEEEECCSSCEEEECTTSCEEEECTTCEEEESCB
T ss_pred EECCCC-CCCCCCCCCHHCCCCCCEEEEEEECCCCCCCEEECCCCCEEEECCCCCEEEEECCCCCEEEECHHHCCCEEEC
T ss_conf 966344-3254223331006512034455403798741540233100340102656999868988688331313110212
Q ss_pred CCCCCCCC
Q ss_conf 25533230
Q gi|254780258|r 197 SNQDHSNV 204 (278)
Q Consensus 197 sN~~~~~~ 204 (278)
||.+|.++
T Consensus 161 sn~~~~~k 168 (168)
T 1vq8_A 161 AGGGRTDK 168 (168)
T ss_dssp TTTTTTTS
T ss_pred CCHHHHHH
T ss_conf 52556656
No 3
>>2zkr_a 60S ribosomal protein L8; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1i_B (a:1-177)
Probab=100.00 E-value=0 Score=420.36 Aligned_cols=166 Identities=26% Similarity=0.464 Sum_probs=158.2
Q ss_pred CCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCEEEEEEEECCCCEEEEEEEECCCCC-----EEEEECCCCC
Q ss_conf 55436775889848788647875102687988633777604788764158852588984147763-----4675164566
Q gi|254780258|r 36 GLCSKGGRNNTGRVTMRFRGGGHKNRYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGS-----LAYILAPQRL 110 (278)
Q Consensus 36 ~~~~~~GRNn~GrITvrhRGGGhKr~yR~IDf~r~~~~~~~~V~~IeYDPnRsa~IALv~~~~g~-----~~YIlAp~gl 110 (278)
.+++++||||+||||+|||||||| ||.|||+|++.+++++|++|||||||||+||||.|.||+ ++||+||+++
T Consensus 5 ~~~~~~GRn~~Grit~~hrggg~k--yr~id~~r~~~~~~~~V~~i~ydp~Rsa~Ialv~~~~g~~~~~~~~yi~a~~g~ 82 (177)
T 2zkr_a 5 IRGQRKGAGSVFRAHVKHRKGAAR--LRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGI 82 (177)
T ss_dssp CHHHHGGGCSTTSCCGGGCCCCCC--CCCCCTTTCTTCEEEEEEEEEEETTTTEEEEEEEESSCCSSSSSCCEECCBSSC
T ss_pred CCCCCCCCCCCCEECCCEECCCCC--CCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCEEEEECCCCC
T ss_conf 412256899897671200078764--574573003599328999999679998058999941675467627889767773
Q ss_pred CCCCEEEECCCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEE--CCCEEEEEECCCCEEEECCC
Q ss_conf 1045788366676757574110443574637762333036882588634651899675--08889999489758998567
Q gi|254780258|r 111 SVGDKVISSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVER--DRSRALLRLSSGEMRFVHSS 188 (278)
Q Consensus 111 ~vGd~I~s~~~~~~i~~Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsAGt~a~Ii~k--~~~~~~ikLPSGe~r~i~~~ 188 (278)
++||.|.++..+ ++++||++||.+||+||+|||||+.||+||||||||||||+|++| |+++++|||||||+++|+++
T Consensus 83 ~~G~~i~~~~~~-~~~~Gn~~pL~~iP~Gt~I~nIE~~pg~ggk~~RsAGt~a~ii~k~~~~~~~~ikLPSGe~k~i~~~ 161 (177)
T 2zkr_a 83 HTGQFVYCGKKA-QLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSA 161 (177)
T ss_dssp BTTCEEEESTTC-CSCTTCEEEGGGSCTTEEEESBCSSTTSCCCBSCSTTCCEEEEECCSSSSCEEEECTTSCEEEECTT
T ss_pred CCCCEECCCCCC-EEECCCHHHHHHCCCCCEEEEEEEECCCCCCEECCCCCEEEEEEECCCCCEEEEECCCCCEEECCCC
T ss_conf 203243146652-0201103346318864177437630147750201366259998850678779997688675701568
Q ss_pred CEEEEEEECCCCCCCC
Q ss_conf 8099985125533230
Q gi|254780258|r 189 CMASIGAVSNQDHSNV 204 (278)
Q Consensus 189 c~AtIG~vsN~~~~~~ 204 (278)
|+||||+|||.+|.++
T Consensus 162 c~AtiG~vsn~~~~~k 177 (177)
T 2zkr_a 162 NRAVVGVVAGGGRIDK 177 (177)
T ss_dssp CEEEESCBSCTTTTTS
T ss_pred CEEEEEEECCCCHHHH
T ss_conf 7089999538734322
No 4
>>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} (A:)
Probab=100.00 E-value=0 Score=362.35 Aligned_cols=137 Identities=49% Similarity=0.922 Sum_probs=134.4
Q ss_pred EEEEEEEEECCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCC
Q ss_conf 26879886337776047887641588525889841477634675164566104578836667675757411044357463
Q gi|254780258|r 61 RYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGS 140 (278)
Q Consensus 61 ~yR~IDf~r~~~~~~~~V~~IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~i~~Gn~lpL~~IP~Gt 140 (278)
+||+|||+|++.+++++|++|||||||||+||||+|.|++++|||||+||++||.|.++..+ ++++||++||.+||+||
T Consensus 1 ryR~iDf~r~~~~~~~~V~~i~yDp~Rsa~ialv~~~~~~~~yIla~~g~~~Gd~i~~~~~~-~~~~Gn~~pL~~iP~Gt 79 (137)
T 1rl2_A 1 QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADGEKRYIIAPKNLKVGXEIXSGPDA-DIKIGNALPLENIPVGT 79 (137)
T ss_dssp CCSCBCSSCCCTTCCEEEEEEEEEGGGTEEEEEEEETTSCEEEEECCTTCCTTCEECBSTTC-CSCTTCEEEGGGSCTTC
T ss_pred CCCEEEEEECCCCCCEEEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCEEEECCCCC-CCCCCCCCCHHHCCCCE
T ss_conf 98749450888999799999998899986068998389978999616201242168327636-74733465511254540
Q ss_pred EEEEEEEECCCCEEEEEECCCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECC
Q ss_conf 7762333036882588634651899675088899994897589985678099985125
Q gi|254780258|r 141 IVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSN 198 (278)
Q Consensus 141 ~I~NIE~~pG~Ggkl~RsAGt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN 198 (278)
+|||||+.||+||||||||||||+|++|++++++|||||||+|+|+++|+||||+|||
T Consensus 80 ~I~nIE~~pg~ggk~~RsAGt~a~ii~k~~~~~~ikLPSg~~k~i~~~c~AtiG~vSN 137 (137)
T 1rl2_A 80 LVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRXILGKCRATVGEVGN 137 (137)
T ss_dssp EEESEESSTTSCEEESSSSSCCEEEEEEETTEEEEECTTSCEEEEETTSEEEESCCC-
T ss_pred EEEEECCCCCCCCEEEEECCCEEEEEEECCCEEEEECCCCCEEEECCCCCEEEEEECC
T ss_conf 9763713799875899804652799997399999993898978999859599977069
No 5
>>3i1n_C 50S ribosomal protein L2; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C 3df2_C 3df4_C 1vs6_C 3i1p_C 3i1r_C 3i1t_C 3i20_C 3i22_C 2qam_C* 1p85_A 1p86_A 2i2v_C 2i2t_C* 2qao_C* ... (C:70-200,C:260-273)
Probab=100.00 E-value=0 Score=345.16 Aligned_cols=135 Identities=55% Similarity=0.920 Sum_probs=129.8
Q ss_pred CCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCEEEEEEEEC
Q ss_conf 37776047887641588525889841477634675164566104578836667675757411044357463776233303
Q gi|254780258|r 70 GEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKP 149 (278)
Q Consensus 70 ~~~~~~~~V~~IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~i~~Gn~lpL~~IP~Gt~I~NIE~~p 149 (278)
++.+++++|++|||||||||+||||.|.||+++|||||+||++||.|.++.++ ++++||++||.+||+||+|||||+.|
T Consensus 1 nk~~i~g~V~~I~yDPnRsa~IAlv~~~~g~k~yIlA~~g~~vGd~I~~~~~~-~~~~Gn~~pL~~IP~Gt~I~NIE~~p 79 (145)
T 3i1n_C 1 NKDGIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQSGVDA-AIKPGNTLPMRNIPVGSTVHNVEMKP 79 (145)
T ss_dssp CCBSCCBCCCEEEECTTCSSEEEECCBTTTBCCEECCBSSCCTTCCBCBSSSC-CCCTTCBCCGGGSCTTCCCSSBCSST
T ss_pred CCCCCCEEEEEEEECCCCCEEEEEEEECCCEEEEEECCHHHCCCCEEEECCCC-CCCCCCCCCHHHCCCCEEEEEEEECC
T ss_conf 55665679999996487443768997058818999676220689789734776-55655547464487735889874348
Q ss_pred CCCEEEEEECCCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCC
Q ss_conf 68825886346518996750888999948975899856780999851255332300
Q gi|254780258|r 150 GKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVN 205 (278)
Q Consensus 150 G~Ggkl~RsAGt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~~~~~~ 205 (278)
|+||||||||||||+|++|++++++|||||||+++|+++||||||+|||.+|..+.
T Consensus 80 G~Ggk~aRsAGt~A~ii~k~~~~~~ikLPSG~~k~i~~~c~ATIG~vSN~~h~~~~ 135 (145)
T 3i1n_C 80 GKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHNKRT 135 (145)
T ss_dssp TSCCCBSCSTTCCCEEEECCTTSEEEECTTSCEEEECSSCCCBSSCBSCCGGCSTT
T ss_pred CCCCEEEEECCEEEEEEEECCCEEEEEECCCCEEEECCCCCEEEECCCCCHHCCCC
T ss_conf 99861665234189999861867999702665277220041775002662239887
No 6
>>3bbo_E Ribosomal protein L2; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (E:62-198)
Probab=100.00 E-value=0 Score=356.35 Aligned_cols=137 Identities=41% Similarity=0.808 Sum_probs=133.8
Q ss_pred EEEECCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCEEEEE
Q ss_conf 88633777604788764158852588984147763467516456610457883666767575741104435746377623
Q gi|254780258|r 66 DFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGSIVHNV 145 (278)
Q Consensus 66 Df~r~~~~~~~~V~~IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~i~~Gn~lpL~~IP~Gt~I~NI 145 (278)
||+|.+.+++++|++|||||||||+||||+|.|++++|||||+||++||.|.++.++ ++++||++||.+||+||+||||
T Consensus 1 Df~r~~~~~~g~V~~i~yDP~Rsa~iAlv~~~~~~~~yIla~~g~~~Gd~I~~~~~~-~~~~Gn~~pL~~iP~Gt~I~ni 79 (137)
T 3bbo_E 1 DFRRNEKDIYGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV-PIKMGNALPLTDMPLGTAIHNI 79 (137)
T ss_dssp CCSCCCCSCCCCCCCCCCCSSSCSCCCCCCCSSCCCCCCCCCSSCSSCCCCCCSSSC-CCSSCSCEEGGGCSSCSSCCCC
T ss_pred CCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEECCHHCCCCEEEEECCCC-CCCCCCCCCCCCCCCCCEEEEE
T ss_conf 400033555316899841676146799864267736998676121234078732456-7651221344446576387757
Q ss_pred EEECCCCEEEEEECCCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCC
Q ss_conf 3303688258863465189967508889999489758998567809998512553323
Q gi|254780258|r 146 EMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSN 203 (278)
Q Consensus 146 E~~pG~Ggkl~RsAGt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~~~~ 203 (278)
|+.||+||||||||||||+|++|++++++|||||||+|+|+++|+||||+|||.+|++
T Consensus 80 E~~pg~ggk~~RsAGt~a~ii~k~~~~~~ikLpSG~~k~i~~~c~AtiG~vsn~~h~~ 137 (137)
T 3bbo_E 80 EITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQ 137 (137)
T ss_dssp CSSSSCCCSSCCTTTCCCBCCSSCSTTCCCBCSTTCBCCCCSSCEECSCCCCCSHHHH
T ss_pred EECCCCCCEEEEECCCEEEEEEECCCEEEEECCCCCEEECCCCCCEEEEEECHHHHHC
T ss_conf 6549998716881364379999728879995478214740100543576644444315
No 7
>>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_B (B:28-136)
Probab=100.00 E-value=4.2e-38 Score=270.31 Aligned_cols=105 Identities=36% Similarity=0.646 Sum_probs=101.5
Q ss_pred CCCCCCCCCEEEECCCC----CCCCCCCCHHHHHCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEECCCEEEEEECCCC
Q ss_conf 64566104578836667----67575741104435746377623330368825886346518996750888999948975
Q gi|254780258|r 106 APQRLSVGDKVISSDSA----VDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGE 181 (278)
Q Consensus 106 Ap~gl~vGd~I~s~~~~----~~i~~Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsAGt~a~Ii~k~~~~~~ikLPSGe 181 (278)
||+||++||+|+++... .++++||++||.+||+||.|||||++||+||||||||||||||++||+++++|||||||
T Consensus 1 A~~gl~~Gd~i~s~~~~~~~~~~~~~Gn~~pL~~iP~Gt~I~nIE~~pg~ggk~~RsAGt~a~ii~k~~~~v~ikLpSge 80 (109)
T 2ftc_B 1 ATENMQAGDTILNSNHIGRMAVAAREGDAHPLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKR 80 (109)
T ss_pred EECCEECCCEEEECCCCCCCCCCCCCCCHHCCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEEECCCEEEEECCCCC
T ss_conf 77440068789978856656444456610052418713697777754998408975024227998772888999877877
Q ss_pred EEEECCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 89985678099985125533230013134
Q gi|254780258|r 182 MRFVHSSCMASIGAVSNQDHSNVNHAKAG 210 (278)
Q Consensus 182 ~r~i~~~c~AtIG~vsN~~~~~~~~gKAG 210 (278)
+|+|+.+||||||+|||.+|.+++++|||
T Consensus 81 ~r~i~~~c~AtiG~vsn~~~~~~~~gKAG 109 (109)
T 2ftc_B 81 QMQVLETCVATVGRVSNVDHNKRVIGKAG 109 (109)
T ss_pred EEEECCCCEEEEEEEECCCCCCCEECCCC
T ss_conf 27978978499857007641356465769
No 8
>>3i1n_C 50S ribosomal protein L2; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C 3df2_C 3df4_C 1vs6_C 3i1p_C 3i1r_C 3i1t_C 3i20_C 3i22_C 2qam_C* 1p85_A 1p86_A 2i2v_C 2i2t_C* 2qao_C* ... (C:1-69,C:201-230)
Probab=100.00 E-value=8.3e-39 Score=274.96 Aligned_cols=70 Identities=50% Similarity=0.830 Sum_probs=69.0
Q ss_pred CCCEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEC
Q ss_conf 9750115888410510870457641688722211155436775889848788647875102687988633
Q gi|254780258|r 1 MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKNRYRLVDFKRG 70 (278)
Q Consensus 1 M~~k~~kP~Tp~~R~~~~~~~~~l~k~~p~K~L~~~~~~~~GRNn~GrITvrhRGGGhKr~yR~IDf~r~ 70 (278)
|+||+|||+|||+||++++++++||+++|+|+|++++++++||||+|+||+|||||||||+||+|||+|.
T Consensus 1 M~ik~~kP~Tps~R~~~~~~~~~l~k~~p~k~Lt~~~~k~~GRNn~GrIT~RhrGGGhKr~YR~IDFkR~ 70 (99)
T 3i1n_C 1 MAVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRNNNGRITTRHIGGGHKQAYRIVDFKRM 70 (99)
T ss_dssp -CEEECCCSSTTTTTCEEECCTTBCCSSCCGGGEECCCCCTTBCSSSCBCSTTBCCCCCCCEECCCSSCG
T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCH
T ss_conf 9855437969756866750479639798325223546666752899648787616870146775241013
No 9
>>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} (D:57-140)
Probab=99.97 E-value=1.4e-30 Score=220.84 Aligned_cols=83 Identities=46% Similarity=0.864 Sum_probs=80.0
Q ss_pred ECCCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEEC
Q ss_conf 36667675757411044357463776233303688258863465189967508889999489758998567809998512
Q gi|254780258|r 118 SSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVS 197 (278)
Q Consensus 118 s~~~~~~i~~Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsAGt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vs 197 (278)
++.++ ++++||++||.+||+||+|||||+.||+||||||||||||+|++|++++++|||||||+|+|+++|+||||+||
T Consensus 2 ~g~~~-~~~~Gn~~pL~~iP~Gt~I~niE~~pg~ggk~~RsAGt~a~ii~k~~~~~~ikLpSge~r~i~~~c~AtIG~vs 80 (84)
T 1giy_D 2 SGPDA-DIKIGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRMILGKCRATVGEVG 80 (84)
T ss_pred ECCCC-CCCCCCEECCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEEECCCEEEEECCCCCEEEECCCCEEEEEEEC
T ss_conf 05546-65775343521189998898999769995279985898699999349999998689887987777859997925
Q ss_pred CCCC
Q ss_conf 5533
Q gi|254780258|r 198 NQDH 201 (278)
Q Consensus 198 N~~~ 201 (278)
|.+|
T Consensus 81 n~~h 84 (84)
T 1giy_D 81 NGGR 84 (84)
T ss_pred CCCH
T ss_conf 9501
No 10
>>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} (D:1-56)
Probab=99.80 E-value=4.7e-20 Score=151.59 Aligned_cols=56 Identities=52% Similarity=0.966 Sum_probs=54.5
Q ss_pred EEEEEEEEECCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEE
Q ss_conf 26879886337776047887641588525889841477634675164566104578
Q gi|254780258|r 61 RYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKV 116 (278)
Q Consensus 61 ~yR~IDf~r~~~~~~~~V~~IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I 116 (278)
+||+|||+|++.+++|+|++|||||||||+||||.|+||+++||||||||++||.|
T Consensus 1 rYR~IDf~r~~~~i~g~V~~IeyDP~Rsa~IAlv~~~dg~~~yilApeg~~vGd~I 56 (56)
T 1giy_D 1 QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADGEKRYIIAPKNLKVGMEI 56 (56)
T ss_pred CCCEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCCCCEE
T ss_conf 98668462557999889999998999981299998178778999777544236413
No 11
>>3h41_A NLP/P60 family protein; NP_979181.1, NLPC/P60 family protein, structural genomics, joint center for structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987} (A:108-184)
Probab=83.39 E-value=3.2 Score=21.13 Aligned_cols=48 Identities=13% Similarity=0.148 Sum_probs=39.9
Q ss_pred EEEEEEECCCCEEEEE-ECCCEEEEEEECCCEEEEEECCCCEEEECCCC
Q ss_conf 7623330368825886-34651899675088899994897589985678
Q gi|254780258|r 142 VHNVEMKPGKGGQISR-SAGSYARLVERDRSRALLRLSSGEMRFVHSSC 189 (278)
Q Consensus 142 I~NIE~~pG~Ggkl~R-sAGt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c 189 (278)
.-||..-||....+.- +-|+--.++.+++++..|+||.|..-+|...-
T Consensus 19 ~~nlr~gpg~~~~~~~v~~gt~L~vl~~~~~w~kV~lp~G~~gWv~~~~ 67 (77)
T 3h41_A 19 TAILYINPSEKHKSLEVSYNTRLPLLSEDTISYRVLLPNGQKAWLRKND 67 (77)
T ss_dssp EEEEEESSCTTCCEEEEETTCEEEEEEECSSEEEEECTTSCEEEEEGGG
T ss_pred EEEEEECCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCHHHHCCC
T ss_conf 3688605775532110246765631245653023420133210110145
No 12
>>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} (A:353-480)
Probab=56.30 E-value=13 Score=17.05 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=24.8
Q ss_pred CCEEEEEEEECCCCEEEEEEEECCCC-----CEEEEECC
Q ss_conf 60478876415885258898414776-----34675164
Q gi|254780258|r 74 LEGVVKRLEYDPNRTAFIALISYSNG-----SLAYILAP 107 (278)
Q Consensus 74 ~~~~V~~IeYDPnRsa~IALv~~~~g-----~~~YIlAp 107 (278)
..+.|..+.|||+...+||+++-..| +.-|++.+
T Consensus 26 ~~~~v~k~~~d~~~G~~i~~~RI~sG~l~~g~~v~~~~~ 64 (128)
T 1n0u_A 26 LMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGP 64 (128)
T ss_dssp CEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECT
T ss_pred CEEEEEEECCCCCCCCEEEEEEEECCEECCCCEEEECCC
T ss_conf 226789851248877546798854225617998996155
No 13
>>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein structure initiative; 1.85A {Shewanella oneidensis mr-1} (A:1-73)
Probab=53.44 E-value=11 Score=17.66 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=30.4
Q ss_pred EEECCCCCCEEEEEEEECCCCEEEEEEEECCCCCEE---EEECCCCCCCCCEEEE
Q ss_conf 863377760478876415885258898414776346---7516456610457883
Q gi|254780258|r 67 FKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLA---YILAPQRLSVGDKVIS 118 (278)
Q Consensus 67 f~r~~~~~~~~V~~IeYDPnRsa~IALv~~~~g~~~---YIlAp~gl~vGd~I~s 118 (278)
|..-=.++|++|++|+=| + .+|++.+. |..+ .-|-||..++||.++.
T Consensus 19 ~~~MCLaIP~kIveI~~~-~---~~A~Vd~~-Gv~ReVsl~Lv~e~v~vGDyVLV 68 (73)
T 3d3r_A 19 FQGXCLSIPSQVVAVDNE-R---QSVTVDTL-GVRRDVSSHLXTEPLAIGDYVLI 68 (73)
T ss_dssp EETTEECCCEEEEEEETT-T---TEEEEEET-TEEEEEECTTBSSCCCTTCEEEE
T ss_pred CCCCCEECCEEEEEECCC-C---CEEEEECC-CEEEEEEHHHCCCCCCCCCEEEE
T ss_conf 553315015499999199-8---88999679-95999982124588889979999
No 14
>>3da0_A Cleaved chimeric receptor binding protein from bacteriophages TP901-1 and P2; lactococcal phage P2; 1.65A {Lactococcus phage tp901-1} (A:)
Probab=51.20 E-value=16 Score=16.52 Aligned_cols=84 Identities=15% Similarity=0.343 Sum_probs=47.4
Q ss_pred CCCCEEEEEECCCEEEEEEECCCEEEEEECCCCEEEEC----------------CCCEEEEEEECCC-CCCCCCCCCCCC
Q ss_conf 36882588634651899675088899994897589985----------------6780999851255-332300131344
Q gi|254780258|r 149 PGKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVH----------------SSCMASIGAVSNQ-DHSNVNHAKAGR 211 (278)
Q Consensus 149 pG~Ggkl~RsAGt~a~Ii~k~~~~~~ikLPSGe~r~i~----------------~~c~AtIG~vsN~-~~~~~~~gKAG~ 211 (278)
|-+-..+--.+|-.-|+-.|..+.|.+++- |++-.+. ....--||-..+. +-..+-+---|.
T Consensus 31 ptq~~tvq~gnGl~l~ltKK~nDlV~v~f~-G~vt~i~sg~~m~~~wV~~pfrP~~~qsLvGH~ag~~~SFHIDI~pdGs 109 (136)
T 3da0_A 31 PVQTLTVEAGNGLQLQLTKKNNDLVIVRFF-GSVSNIQKGWNMSGTWVDRPFRPAAVQSLVGHFAGRDTSFHIDINPNGS 109 (136)
T ss_dssp CEEEEEEEEETTEEEEEEEETTTEEEEEEE-EEECSBCTTCBCSSCCCCGGGCCSSCEEEEEEETTSSCEEEEEECTTSC
T ss_pred EEEEEEEEECCCEEEEEEECCCCEEEEEEE-EEEEEEECCCEECCCEECCCCCCCCEEEEEEEECCCCCEEEEEECCCCE
T ss_conf 037889994796799999638979999986-4887510575643543168878653478999973888336897089964
Q ss_pred CCCCC----CCC-CCCEEEECCCCCCC
Q ss_conf 10057----799-70123326874788
Q gi|254780258|r 212 ARWLG----MRS-HVRGVAMNPVDHPH 233 (278)
Q Consensus 212 ~Rwlg----~RP-~VRGvAMNpvDHPh 233 (278)
-+|-| .-| ..||-||-.+-|.|
T Consensus 110 itWWG~~~~~~~~apRG~asYFIk~~~ 136 (136)
T 3da0_A 110 ITWWGANIDKTPIATRGNGSYFIKHHH 136 (136)
T ss_dssp EEECSCCBCSSCEEEEEEEEEECC---
T ss_pred EEEECCCCCCCCCCCCCCEEEEEECCC
T ss_conf 898367667897675652357753169
No 15
>>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} (A:1-86)
Probab=47.58 E-value=18 Score=16.16 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=25.0
Q ss_pred CCCEEEEEEECCCEEEEEECCCCEEEECCC
Q ss_conf 465189967508889999489758998567
Q gi|254780258|r 159 AGSYARLVERDRSRALLRLSSGEMRFVHSS 188 (278)
Q Consensus 159 AGt~a~Ii~k~~~~~~ikLPSGe~r~i~~~ 188 (278)
+=..|.|.+.+++.++|++..|+.+.|..+
T Consensus 46 gfv~a~I~~~~gd~vtV~t~~G~~~~Vk~d 75 (86)
T 1g8x_A 46 SYECGEIVSETSDSFTFKTVDGQDRQVKKD 75 (86)
T ss_dssp CCEEEEEEEEETTEEEEECSSSSEEEEETT
T ss_pred CEEEEEEEEECCCEEEEEECCCCEEEECHH
T ss_conf 468899997559847999479967775578
No 16
>>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} (7:314-407)
Probab=44.43 E-value=20 Score=15.85 Aligned_cols=72 Identities=14% Similarity=0.253 Sum_probs=34.6
Q ss_pred CCEEEEEEEECCCCEEEEEEEECCC-----CCEEEEECCC-CCCCCCEEEE-CCCCC---CCCCCCCHH---HHHCCCCC
Q ss_conf 6047887641588525889841477-----6346751645-6610457883-66676---757574110---44357463
Q gi|254780258|r 74 LEGVVKRLEYDPNRTAFIALISYSN-----GSLAYILAPQ-RLSVGDKVIS-SDSAV---DVKPGNAMP---LRFIPVGS 140 (278)
Q Consensus 74 ~~~~V~~IeYDPnRsa~IALv~~~~-----g~~~YIlAp~-gl~vGd~I~s-~~~~~---~i~~Gn~lp---L~~IP~Gt 140 (278)
..+.|..++|||.+.- |+.++-.. |+.-|+..++ ..++...... +.... ++..||+.- |.++.+|.
T Consensus 4 l~~~Vfki~~d~~~G~-i~~~Rv~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~a~aGdI~~i~gl~~~~~Gd 82 (94)
T 2rdo_7 4 FSALAFKIATDPFVGN-LTFFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVTTGD 82 (94)
T ss_pred EEEEEEEEEECCCCCE-EEEEEEECCEECCCCEEEEECCCCEEEECEEEEECCCCCEECCEECCCCEEEEECCCCCCCCC
T ss_conf 3899998576499973-999999655526989998655898289477888607983099788899899996877763788
Q ss_pred EEEEEE
Q ss_conf 776233
Q gi|254780258|r 141 IVHNVE 146 (278)
Q Consensus 141 ~I~NIE 146 (278)
.+++.+
T Consensus 83 tl~~~~ 88 (94)
T 2rdo_7 83 TLCDPD 88 (94)
T ss_pred EEECCC
T ss_conf 872899
No 17
>>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae R6} PDB: 2qf5_A (A:69-155)
Probab=44.30 E-value=20 Score=15.83 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=33.7
Q ss_pred CCEEEEEEEECCC---C--CEEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCEE
Q ss_conf 8525889841477---6--3467516456610457883666767575741104435746377
Q gi|254780258|r 86 NRTAFIALISYSN---G--SLAYILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGSIV 142 (278)
Q Consensus 86 nRsa~IALv~~~~---g--~~~YIlAp~gl~vGd~I~s~~~~~~i~~Gn~lpL~~IP~Gt~I 142 (278)
.+|...+++...+ + +..||-.-..+++||.|.++...- + ....||+|++.
T Consensus 12 ~~t~~~Gil~G~~~~~~~l~l~~i~~~~~i~~Gd~vvTSG~~g-~------fP~GipVG~V~ 66 (87)
T 2qf4_A 12 GSTTIYGIIIGYDKENDVLKISQLNSNSDISAGDKVTTGGLGN-F------NVADIPVGEVV 66 (87)
T ss_dssp TTEEEEEEEEEEETTTTEEEEECCSCCCCCCTTCEEEEECCSS-S------CCEEEEEEEEE
T ss_pred CCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCEEEECCCCC-C------CCCCCEEEEEE
T ss_conf 7642134630113456640452123445335785499826456-6------89997889999
No 18
>>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A (A:279-386)
Probab=40.78 E-value=23 Score=15.49 Aligned_cols=13 Identities=8% Similarity=-0.153 Sum_probs=7.4
Q ss_pred EEEEEEEECCCCE
Q ss_conf 4788764158852
Q gi|254780258|r 76 GVVKRLEYDPNRT 88 (278)
Q Consensus 76 ~~V~~IeYDPnRs 88 (278)
.+|....|||.+.
T Consensus 23 ~kv~~~~~d~~~G 35 (108)
T 2h5e_A 23 FKIQANMDPKHRD 35 (108)
T ss_dssp EEECSSCCSSSSC
T ss_pred EEEEECCCCCCCC
T ss_conf 9997037755474
No 19
>>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} (A:)
Probab=40.32 E-value=10 Score=17.75 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=20.1
Q ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf 131344100577997012332687478888
Q gi|254780258|r 206 HAKAGRARWLGMRSHVRGVAMNPVDHPHGG 235 (278)
Q Consensus 206 ~gKAG~~Rwlg~RP~VRGvAMNpvDHPhGG 235 (278)
+..++...+-..++ |.-.|+--||||||
T Consensus 148 ~~~~~~~~~~~~~~--~~~~~~~~~~~~g~ 175 (175)
T 2hpu_A 148 PVETGSEPRADDED--YLGRLRALPHPAGG 175 (175)
T ss_dssp SSCSSCCSSSSCC-----------------
T ss_pred CCCCCCCCCCCHHH--HHHHHHHCCCCCCC
T ss_conf 77657666620577--87445513688899
No 20
>>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION transport, hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 1um2_C (A:107-183)
Probab=37.92 E-value=25 Score=15.25 Aligned_cols=54 Identities=22% Similarity=0.431 Sum_probs=36.3
Q ss_pred CCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCEEEEE--ECCCEE
Q ss_conf 763467516456610457883666767575741104435746377623330368825886--346518
Q gi|254780258|r 98 NGSLAYILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISR--SAGSYA 163 (278)
Q Consensus 98 ~g~~~YIlAp~gl~vGd~I~s~~~~~~i~~Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~R--sAGt~a 163 (278)
|-++.|-..| -+++||.| ++++ -|+.+++++++|-|=.-|+..|.+.. .+|+|.
T Consensus 6 D~~k~W~F~P-~vk~Gd~V-~~Gd----------i~G~V~E~~i~HkIMvPp~~~G~v~~i~~~G~yt 61 (77)
T 3gqb_A 6 DREKKWAWTP-MVKPGDEV-RGGM----------VLGTVPEFGFTHKILVPPDVRGRVKEVKPAGEYT 61 (77)
T ss_dssp CSSSCEEEEE-CCCTTCEE-CTTC----------EEEEEEETTEEEEEECCTTCCEEEEEECCSEEEC
T ss_pred CCCCCCCCCC-CCCCCCCC-CCCC----------EEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCE
T ss_conf 6222444321-24568713-5786----------0335325653320235888775079970689714
No 21
>>2mys_A Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} (A:33-89)
Probab=36.13 E-value=27 Score=15.02 Aligned_cols=27 Identities=11% Similarity=0.171 Sum_probs=23.2
Q ss_pred EEEEEEECCCEEEEEECCCCEEEECCC
Q ss_conf 189967508889999489758998567
Q gi|254780258|r 162 YARLVERDRSRALLRLSSGEMRFVHSS 188 (278)
Q Consensus 162 ~a~Ii~k~~~~~~ikLPSGe~r~i~~~ 188 (278)
.|.|++.+++.++|++.+|+.+.+..+
T Consensus 17 ~geI~~~~gd~v~V~t~dG~~~tvk~d 43 (57)
T 2mys_A 17 XGTIQSXEGGXVTVXTEGGETLTVKED 43 (57)
T ss_dssp EEEEEEECSSEEEECCSSSCCEEEEGG
T ss_pred EEEEEEECCCEEEEECCCCCEEEECHH
T ss_conf 999998059869998389988996599
No 22
>>2owo_A DNA ligase; protein/DNA complex, ligase/DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli K12} (A:318-477)
Probab=30.72 E-value=4.3 Score=20.29 Aligned_cols=93 Identities=18% Similarity=0.241 Sum_probs=53.3
Q ss_pred CEEEEEEEECCCCEEEEEEEECC-----CCC-EEE-------EECCCCCCCCCEEEECCCC--CCC--------CCCCCH
Q ss_conf 04788764158852588984147-----763-467-------5164566104578836667--675--------757411
Q gi|254780258|r 75 EGVVKRLEYDPNRTAFIALISYS-----NGS-LAY-------ILAPQRLSVGDKVISSDSA--VDV--------KPGNAM 131 (278)
Q Consensus 75 ~~~V~~IeYDPnRsa~IALv~~~-----~g~-~~Y-------IlAp~gl~vGd~I~s~~~~--~~i--------~~Gn~l 131 (278)
..+|.+|++...||..|.-+... +|. -++ .+.-.++.+||.|.-...+ +|- .+++.
T Consensus 4 ~T~l~~I~~~vGRTG~itPvA~lePV~l~G~tV~ratLhN~~~i~~~~i~iGd~V~V~kaGdvIP~I~~vv~~~r~~~~- 82 (160)
T 2owo_A 4 MTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDT- 82 (160)
T ss_dssp EEEEEEEEEEECTTSBEEEEEEEEEEEETTEEEEEEECCSHHHHHHHTCCBTCEEEEEEETTTEEEEEEECGGGCCSSC-
T ss_pred EEEEEEEEEEEECCCEEEEEEEEEEEEEECCEEEEECCCCHHHHHHHCCCCCCEEEEEHHCCCHHHHHHHHHHHCCCCC-
T ss_conf 8987678997522627889999736886140765310477889987405448655664010321766431253187778-
Q ss_pred HHHHCCCCCEEEEEEEECCCCE--EEEEEC-CCEEEEEEE
Q ss_conf 0443574637762333036882--588634-651899675
Q gi|254780258|r 132 PLRFIPVGSIVHNVEMKPGKGG--QISRSA-GSYARLVER 168 (278)
Q Consensus 132 pL~~IP~Gt~I~NIE~~pG~Gg--kl~RsA-Gt~a~Ii~k 168 (278)
..-.+|.-...|+=++...+++ .+|-.+ .+.||++++
T Consensus 83 ~~~~~p~~CPsCgs~l~~~~~~~~~~C~N~~~C~~q~~~r 122 (160)
T 2owo_A 83 REVVFPTHCPVCGSDVERVEGEAVARCTGGLICGAQRKES 122 (160)
T ss_dssp BCCCCCSBCTTTCCBEEECTTCSCEEECCGGGCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHH
T ss_conf 7620244655557633444786358966987658999999
No 23
>>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} PDB: 1quq_B 1l1o_A (A:)
Probab=29.60 E-value=34 Score=14.32 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=35.1
Q ss_pred CCCEEEEEEEECCCCEEE--EEECCCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCC
Q ss_conf 463776233303688258--863465189967508889999489758998567809998512553
Q gi|254780258|r 138 VGSIVHNVEMKPGKGGQI--SRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQD 200 (278)
Q Consensus 138 ~Gt~I~NIE~~pG~Ggkl--~RsAGt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~ 200 (278)
+|-.|.=| |+. +++.|..+++..-|+..++|+|++..- .......-.||.|.+..
T Consensus 21 ~Gk~Vriv-------GkV~~~~~~g~~~~l~s~D~~~V~v~l~~~~~-~~~~~~vEViG~V~~~~ 77 (121)
T 3kdf_A 21 IDKPVCFV-------GRLEKIHPTGKXFILSDGEGKNGTIELXEPLD-EEISGIVEVVGRVTAKA 77 (121)
T ss_dssp TTCEEEEE-------EEEEEECTTSSEEEEECTTSCEEEEECSSCCS-SCCCSEEEEEEEECTTS
T ss_pred CCCEEEEE-------EEEEEECCCCCEEEEECCCCCEEEEEECCCCC-CCCCCEEEEEEEECCCC
T ss_conf 89768999-------99988859998799993999899999479777-76687799999989999
No 24
>>1oei_A Major prion protein; octapeptide repeats, structure, protein aggregation, PH-dependent conformation, brain, disease mutation; NMR {Homo sapiens} (A:)
Probab=29.13 E-value=32 Score=14.51 Aligned_cols=20 Identities=45% Similarity=1.062 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 4788888888888887887887343
Q gi|254780258|r 230 DHPHGGGEGKTSGGRNPCSPWGKLT 254 (278)
Q Consensus 230 DHPhGGGeGkt~~gr~~~spwG~~~ 254 (278)
..||||+=|.--+ --||+|.
T Consensus 6 gqphgg~wgqphg-----g~wgqp~ 25 (26)
T 1oei_A 6 GQPHGGGWGQPHG-----GGWGQPX 25 (26)
T ss_dssp SSTTSSSSTTTCS-----SSSSCC-
T ss_pred CCCCCCCCCCCCC-----CCCCCCC
T ss_conf 7866886678768-----8667878
No 25
>>2awn_A Maltose/maltodextrin import ATP-binding protein MALK; ATP-binding cassette, transport protein; HET: ADP; 2.30A {Escherichia coli K12} (A:237-288,A:350-381)
Probab=27.07 E-value=38 Score=14.04 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=14.9
Q ss_pred EEEEEECCCEEEEEECCCCEEEE
Q ss_conf 89967508889999489758998
Q gi|254780258|r 163 ARLVERDRSRALLRLSSGEMRFV 185 (278)
Q Consensus 163 a~Ii~k~~~~~~ikLPSGe~r~i 185 (278)
|+|.+.+++.+.|.|..+.-..+
T Consensus 8 gtV~~~~g~~v~V~L~~g~~~~i 30 (84)
T 2awn_A 8 VKVTATAIDQVQVELPMPNRQQV 30 (84)
T ss_dssp EEEEECCTTCEEEECSSTTCCEE
T ss_pred EEEECCCCCEEEEEEECCCCCEE
T ss_conf 99981224404799844888446
No 26
>>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae} (A:1-168)
Probab=26.80 E-value=17 Score=16.34 Aligned_cols=33 Identities=18% Similarity=0.323 Sum_probs=19.8
Q ss_pred EEEEEE--CCCCCEEEE--ECCCCCCCCCEEEECCCC
Q ss_conf 889841--477634675--164566104578836667
Q gi|254780258|r 90 FIALIS--YSNGSLAYI--LAPQRLSVGDKVISSDSA 122 (278)
Q Consensus 90 ~IALv~--~~~g~~~YI--lAp~gl~vGd~I~s~~~~ 122 (278)
+|.|++ |+.=..|.+ ++.+.+.+||.|.++++.
T Consensus 106 ~liliCGrYEGiDeRv~~~~vd~EiSiGDyVLsGGEl 142 (168)
T 3ief_A 106 GVTLVCGRFEGVDERIIEARELEEVSIGDYILSGGET 142 (168)
T ss_dssp EEEEEECCSSCBBHHHHHHTTCEEEESSSSCCSCHHH
T ss_pred CEEEEECCCCCHHHHHHHHHCCEEEEECCEEECCCHH
T ss_conf 9799815643546999863285787504477428528
No 27
>>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus HB8} (A:284-418)
Probab=23.11 E-value=45 Score=13.56 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=34.4
Q ss_pred CCCEEEEEEEECCCCEEEEEEEECCC-----CCEEEEECCCC-CCCCCEEEE-CCCCC---CCCCCCCH---HHHHCCCC
Q ss_conf 76047887641588525889841477-----63467516456-610457883-66676---75757411---04435746
Q gi|254780258|r 73 GLEGVVKRLEYDPNRTAFIALISYSN-----GSLAYILAPQR-LSVGDKVIS-SDSAV---DVKPGNAM---PLRFIPVG 139 (278)
Q Consensus 73 ~~~~~V~~IeYDPnRsa~IALv~~~~-----g~~~YIlAp~g-l~vGd~I~s-~~~~~---~i~~Gn~l---pL~~IP~G 139 (278)
...+.|-.++|||...- ||+++--. |+.-|+..++. .++++.... +.... ++..||+. -|.++-+|
T Consensus 25 p~~~~V~Ki~~d~~~g~-ia~~RV~sG~l~~g~~v~~~~~~~~~~v~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~G 103 (135)
T 1dar_A 25 PLAALAFKIMADPYVGR-LTFIRVYSGTLTSGSYVYNTTKGRKERVARLLRMHANHREEVEELKAGDLGAVVGLKETITG 103 (135)
T ss_dssp CCEEEEEEEEEETTTEE-EEEEEEEESEEESSCEEEETTTTEEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCCTT
T ss_pred CCEEEEEEEEECCCCCE-EEEEEEECCEECCCCEEEECCCCCEEEEEEEEEEECCCEEEEEEECCCCEEEEECCCCCCCC
T ss_conf 73799998777389986-98999507707679999952699568886799982798148308867877999666666005
Q ss_pred CEEEEEE
Q ss_conf 3776233
Q gi|254780258|r 140 SIVHNVE 146 (278)
Q Consensus 140 t~I~NIE 146 (278)
..+++.|
T Consensus 104 dtl~~~~ 110 (135)
T 1dar_A 104 DTLVGED 110 (135)
T ss_dssp CEEEETT
T ss_pred CEEECCC
T ss_conf 6771699
No 28
>>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} (A:)
Probab=23.08 E-value=45 Score=13.56 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=34.1
Q ss_pred CCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEE
Q ss_conf 676757574110443574637762333036882588634651899675
Q gi|254780258|r 121 SAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVER 168 (278)
Q Consensus 121 ~~~~i~~Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsAGt~a~Ii~k 168 (278)
+-..+++|+.+||..-......-.++-.|---|++.+..|.+|.=|.+
T Consensus 32 el~~L~~Gdvi~l~~~~~~~v~l~v~g~~~~~g~lg~~~~~~av~I~~ 79 (84)
T 1o9y_A 32 ELRRLDAGTILEVTGISPGHATLCHGEQVVAEGELVDVEGRLGLQITR 79 (84)
T ss_dssp HHHTCCTTCEEEECSSCTTEEEEEETTEEEEEEEEEEETTEEEEEEEE
T ss_pred HHHCCCCCCEEEECCCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEE
T ss_conf 995189999999077789989999988999999799999999999999
No 29
>>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962, cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii} (A:158-482)
Probab=22.09 E-value=47 Score=13.43 Aligned_cols=25 Identities=12% Similarity=0.392 Sum_probs=19.9
Q ss_pred CEEEEEEEECCCCEEEEEEE----ECCCC
Q ss_conf 04788764158852588984----14776
Q gi|254780258|r 75 EGVVKRLEYDPNRTAFIALI----SYSNG 99 (278)
Q Consensus 75 ~~~V~~IeYDPnRsa~IALv----~~~~g 99 (278)
+-.++.++|.|.-...|+|| .|+.|
T Consensus 72 pP~~i~l~Y~~~~~~~i~lVGKGitfDtG 100 (325)
T 3ij3_A 72 PPLLIDLKWGDIKAPKVTLVGKGVCFDSG 100 (325)
T ss_dssp CCEEEEEEESCTTSCEEEEEECEEEEECC
T ss_pred CCEEEEEEECCCCCCEEEEEECCEEEECC
T ss_conf 97799997048999769997065798379
No 30
>>3bu2_A Putative tRNA-binding protein; structural genomics, PSI-2, protein structure initiative; 2.70A {Staphylococcus saprophyticus subsp} (A:86-199)
Probab=21.90 E-value=47 Score=13.41 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=32.7
Q ss_pred EEEECCCCCCEEEEEEEECCCC-EEEEEEEECCCCCEEEEECCCCCCCCCEEEE
Q ss_conf 8863377760478876415885-2588984147763467516456610457883
Q gi|254780258|r 66 DFKRGEYGLEGVVKRLEYDPNR-TAFIALISYSNGSLAYILAPQRLSVGDKVIS 118 (278)
Q Consensus 66 Df~r~~~~~~~~V~~IeYDPnR-sa~IALv~~~~g~~~YIlAp~gl~vGd~I~s 118 (278)
||-....-.-|+|.+++--|+- ..++.-|.+.++...-+-...+.+.|+++..
T Consensus 1 Df~~~~di~vgkI~~~~~hp~a~kL~v~~Vd~G~~~~~ivt~~~~~~~~~~~~~ 54 (114)
T 3bu2_A 1 DADFTPKFVVGYVETKDKHPDADKLSVLSVDVATEKLQIVCGAPNVEAGQKVVV 54 (114)
T ss_dssp CCCCCCSEEEEEEEEEEECTTTSSCEEEEEECSSCEEEEEECCTTCCTTCEEEE
T ss_pred CCCCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCEEEEEECCHHCCCCEEEE
T ss_conf 135779979999999896599996899999878852664104300106766111
No 31
>>2cqa_A RUVB-like 2; TIP48, TIP49B, reptin 52, ECP-51, TAP54-beta, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=21.34 E-value=49 Score=13.33 Aligned_cols=50 Identities=18% Similarity=0.255 Sum_probs=33.6
Q ss_pred EECCCCCCEEEEEEEECCCC------EEEEEEEECCCCCEEEEECC--------CCCCCCCEEEE
Q ss_conf 63377760478876415885------25889841477634675164--------56610457883
Q gi|254780258|r 68 KRGEYGLEGVVKRLEYDPNR------TAFIALISYSNGSLAYILAP--------QRLSVGDKVIS 118 (278)
Q Consensus 68 ~r~~~~~~~~V~~IeYDPnR------sa~IALv~~~~g~~~YIlAp--------~gl~vGd~I~s 118 (278)
+..+.-++|.|..|+-|--- .+.|. ++..++++.|=|.| ++..+||+|..
T Consensus 8 kE~~eVyEGEVvei~i~~p~~~~~~~~~~it-LkT~~~e~~~~lg~~i~e~L~kekV~~GDVI~I 71 (95)
T 2cqa_A 8 KEETEIIEGEVVEIQIDRPATGTGSKVGKLT-LKTTEMETIYDLGTKMIESLTKDKVQAGDVITI 71 (95)
T ss_dssp CCCCSEEEEEEEEEEEECTTSSSSSCEEEEE-EECSSSEEEEEECSHHHHHHHHTTCCTTSEEEE
T ss_pred EEEEEEEEEEEEEEEECCCCCCCCCEEEEEE-EEECCCCEEEECCHHHHHHHHHCCCCCCCEEEE
T ss_conf 8989999999999996368888763567899-987477199836989999999849874889999
Done!