HHsearch results for GI: 254780258 and protein with PDBid: 1vq8_A

>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ...
Probab=100.00  E-value=0  Score=582.52  Aligned_cols=221  Identities=36%  Similarity=0.585  Sum_probs=208.2

Q ss_pred             CCCEEEEEECCCCCCEEEEEEEEECCC-CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCC
Q ss_conf             984878864787510268798863377-7604788764158852588984147763467516456610457883666767
Q gi|254780258|r   46 TGRVTMRFRGGGHKNRYRLVDFKRGEY-GLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVD  124 (278)
Q Consensus        46 ~GrITvrhRGGGhKr~yR~IDf~r~~~-~~~~~V~~IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~  124 (278)
                      .|++|++||+++|+++|+.+||+++.. .++++|++|||||||||+||||.|+||+++||||||||++||+|.++..+ +
T Consensus        10 rGrg~~~~R~~~h~~~~~~~~~~~~~~~~i~g~V~~IeyDPnRsa~IAlv~~~dg~~~YIlAp~g~~vGd~I~~g~~~-~   88 (240)
T 1vq8_A           10 RGRGTSTFRAPSHRYKADLEHRKVEDGDVIAGTVVDIEHDPARSAPVAAVEFEDGDRRLILAPEGVGVGDELQVGVSA-E   88 (240)
T ss_dssp             HTTCCGGGSCCGGGCCCCCCCCCCCSSSCCEEEEEEEEEETTTTEEEEEEEETTSCEEEECCBTTCBTTCEEEBSTTC-C
T ss_pred             CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEEECCCC-C
T ss_conf             799988077999331540124774436741389999898989983189999479988999834898588789968765-4


Q ss_pred             CCCCCCHHHHHCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCCC
Q ss_conf             57574110443574637762333036882588634651899675088899994897589985678099985125533230
Q gi|254780258|r  125 VKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNV  204 (278)
Q Consensus       125 i~~Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsAGt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~~~~~  204 (278)
                      +++||++||.+||+||+|||||+.||+||||||||||||||++||+++++|||||||+++|+++|+||||+|||.+|.++
T Consensus        89 ~~~Gn~~pL~~IP~Gt~IhNIE~~pg~Ggkl~RsAGt~a~ii~k~~~~v~vkLPSGe~r~i~~~c~ATIG~vsn~~~~~~  168 (240)
T 1vq8_A           89 IAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHDRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDK  168 (240)
T ss_dssp             SCTTCEEEGGGSCTTCEEESBCSSTTSCCCBSCSTTCCEEEEECCSSCEEEECTTSCEEEECTTCEEEESCBTTTTTTTS
T ss_pred             CCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEEECCCEEEEECCCCCEEEECCCCEEEEEEECCCCCHHH
T ss_conf             47652716211899988788884089842588726852899995499899984897868637778089837506630233


Q ss_pred             CCCCCCCCCCCCCC-----CCCCEEEECCCCCCCCCCCCCCCCCCCCC---CCCCEECCCCCCCCC-CCCCE
Q ss_conf             01313441005779-----97012332687478888888888888788---788734377254888-88861
Q gi|254780258|r  205 NHAKAGRARWLGMR-----SHVRGVAMNPVDHPHGGGEGKTSGGRNPC---SPWGKLTKGKRTRSN-KSTDV  267 (278)
Q Consensus       205 ~~gKAG~~Rwlg~R-----P~VRGvAMNpvDHPhGGGeGkt~~gr~~~---spwG~~~kg~kTr~~-k~~~~  267 (278)
                      +++|||++||++++     |+||||||||||||||||||+++++..++   +|||+.+++.+||+. +.+|+
T Consensus       169 ~lgKAG~~r~~~r~~~~r~P~VRGvAMNpvDHPHGGG~~~~~g~~~~v~~~~p~g~k~~~i~~Rr~~r~~~k  240 (240)
T 1vq8_A          169 PFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVGDIASKRTGRGGNE  240 (240)
T ss_dssp             CCCSHHHHHHHHTTSSCCCSCCCGGGSCGGGCTTCCSSSCCCSSCSEECTTCCTTTCCSEETCSCCSSCC--
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEECCCCCCCCCC
T ss_conf             655553554311024675994332111887699899898989899888887999888078815658987798