HHsearch results for GI: 254780258 and protein with PDBid: 1vq8_A
>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ...
Probab=100.00 E-value=0 Score=582.52 Aligned_cols=221 Identities=36% Similarity=0.585 Sum_probs=208.2
Q ss_pred CCCEEEEEECCCCCCEEEEEEEEECCC-CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCC
Q ss_conf 984878864787510268798863377-7604788764158852588984147763467516456610457883666767
Q gi|254780258|r 46 TGRVTMRFRGGGHKNRYRLVDFKRGEY-GLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVD 124 (278)
Q Consensus 46 ~GrITvrhRGGGhKr~yR~IDf~r~~~-~~~~~V~~IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~ 124 (278)
.|++|++||+++|+++|+.+||+++.. .++++|++|||||||||+||||.|+||+++||||||||++||+|.++..+ +
T Consensus 10 rGrg~~~~R~~~h~~~~~~~~~~~~~~~~i~g~V~~IeyDPnRsa~IAlv~~~dg~~~YIlAp~g~~vGd~I~~g~~~-~ 88 (240)
T 1vq8_A 10 RGRGTSTFRAPSHRYKADLEHRKVEDGDVIAGTVVDIEHDPARSAPVAAVEFEDGDRRLILAPEGVGVGDELQVGVSA-E 88 (240)
T ss_dssp HTTCCGGGSCCGGGCCCCCCCCCCCSSSCCEEEEEEEEEETTTTEEEEEEEETTSCEEEECCBTTCBTTCEEEBSTTC-C
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEEECCCC-C
T ss_conf 799988077999331540124774436741389999898989983189999479988999834898588789968765-4
Q ss_pred CCCCCCHHHHHCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCCC
Q ss_conf 57574110443574637762333036882588634651899675088899994897589985678099985125533230
Q gi|254780258|r 125 VKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNV 204 (278)
Q Consensus 125 i~~Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsAGt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~~~~~ 204 (278)
+++||++||.+||+||+|||||+.||+||||||||||||||++||+++++|||||||+++|+++|+||||+|||.+|.++
T Consensus 89 ~~~Gn~~pL~~IP~Gt~IhNIE~~pg~Ggkl~RsAGt~a~ii~k~~~~v~vkLPSGe~r~i~~~c~ATIG~vsn~~~~~~ 168 (240)
T 1vq8_A 89 IAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHDRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDK 168 (240)
T ss_dssp SCTTCEEEGGGSCTTCEEESBCSSTTSCCCBSCSTTCCEEEEECCSSCEEEECTTSCEEEECTTCEEEESCBTTTTTTTS
T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEEECCCEEEEECCCCCEEEECCCCEEEEEEECCCCCHHH
T ss_conf 47652716211899988788884089842588726852899995499899984897868637778089837506630233
Q ss_pred CCCCCCCCCCCCCC-----CCCCEEEECCCCCCCCCCCCCCCCCCCCC---CCCCEECCCCCCCCC-CCCCE
Q ss_conf 01313441005779-----97012332687478888888888888788---788734377254888-88861
Q gi|254780258|r 205 NHAKAGRARWLGMR-----SHVRGVAMNPVDHPHGGGEGKTSGGRNPC---SPWGKLTKGKRTRSN-KSTDV 267 (278)
Q Consensus 205 ~~gKAG~~Rwlg~R-----P~VRGvAMNpvDHPhGGGeGkt~~gr~~~---spwG~~~kg~kTr~~-k~~~~ 267 (278)
+++|||++||++++ |+||||||||||||||||||+++++..++ +|||+.+++.+||+. +.+|+
T Consensus 169 ~lgKAG~~r~~~r~~~~r~P~VRGvAMNpvDHPHGGG~~~~~g~~~~v~~~~p~g~k~~~i~~Rr~~r~~~k 240 (240)
T 1vq8_A 169 PFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVGDIASKRTGRGGNE 240 (240)
T ss_dssp CCCSHHHHHHHHTTSSCCCSCCCGGGSCGGGCTTCCSSSCCCSSCSEECTTCCTTTCCSEETCSCCSSCC--
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEECCCCCCCCCC
T ss_conf 655553554311024675994332111887699899898989899888887999888078815658987798