Query gi|254780258|ref|YP_003064671.1| 50S ribosomal protein L2 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 278
No_of_seqs 160 out of 1455
Neff 4.8
Searched_HMMs 23785
Date Tue May 24 07:24:41 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780258.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j01_D 50S ribosomal protein L 100.0 0 0 808.5 18.8 274 1-275 1-276 (276)
2 3ofq_C 50S ribosomal protein L 100.0 0 0 798.1 13.1 271 2-274 1-271 (271)
3 3bbo_E Ribosomal protein L2; l 100.0 0 0 788.2 1.9 266 1-272 1-269 (269)
4 2zkr_a 60S ribosomal protein L 100.0 0 0 632.0 13.3 233 39-274 8-256 (257)
5 1vq8_A 50S ribosomal protein L 100.0 0 0 582.5 12.8 221 46-267 10-240 (240)
6 1giy_D 50S ribosomal protein L 100.0 0 0 519.0 16.9 173 61-234 1-178 (178)
7 1rl2_A Protein (ribosomal prot 100.0 0 0 370.6 12.0 137 61-198 1-137 (137)
8 2ftc_B Mitochondrial ribosomal 100.0 0 0 361.5 15.0 132 78-210 1-136 (136)
9 3cb4_D GTP-binding protein LEP 71.3 4.9 0.00021 18.9 6.7 24 75-99 192-215 (599)
10 3d3r_A Hydrogenase assembly ch 68.5 5.7 0.00024 18.5 5.3 50 65-119 17-69 (103)
11 3few_X Colicin S4; cell lysis, 63.7 1.2 5E-05 22.9 0.0 24 232-255 37-62 (505)
12 2pi2_E Replication protein A 1 48.1 12 0.00053 16.2 3.5 56 137-200 41-98 (142)
13 1dgs_A DNA ligase; AMP complex 45.8 2.1 8.9E-05 21.3 -1.1 28 65-92 309-336 (667)
14 2owo_A DNA ligase; protein/DNA 37.8 11 0.00046 16.6 1.5 56 64-119 310-378 (671)
15 2jmz_A Hypothetical protein MJ 36.1 19 0.0008 15.0 2.8 72 77-150 85-160 (186)
16 2z1c_A Hydrogenase expression/ 35.0 20 0.00083 14.9 4.9 41 72-120 3-46 (75)
17 2j5u_A MREC protein; bacterial 33.7 21 0.00087 14.8 5.4 47 100-154 160-206 (255)
18 2ywe_A GTP-binding protein LEP 29.7 24 0.001 14.3 6.5 25 74-99 193-217 (600)
19 1oei_A Major prion protein; oc 29.1 23 0.00095 14.5 2.0 20 230-254 6-25 (26)
20 1wzo_A HPCE; structural genomi 24.9 29 0.0012 13.8 2.9 13 238-250 145-157 (246)
21 3els_A PRE-mRNA leakage protei 24.5 30 0.0013 13.7 3.2 58 82-139 85-148 (158)
22 3ij3_A Cytosol aminopeptidase; 24.2 30 0.0013 13.7 4.5 25 75-99 229-257 (482)
23 1yj5_C 5' polynucleotide kinas 22.4 19 0.00079 15.0 0.5 96 45-150 6-109 (143)
No 1
>2j01_D 50S ribosomal protein L2; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ...
Probab=100.00 E-value=0 Score=808.52 Aligned_cols=274 Identities=53% Similarity=0.933 Sum_probs=267.4
Q ss_pred CCCEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEC-CCCCCEEEE
Q ss_conf 9750115888410510870457641688722211155436775889848788647875102687988633-777604788
Q gi|254780258|r 1 MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKNRYRLVDFKRG-EYGLEGVVK 79 (278)
Q Consensus 1 M~~k~~kP~Tp~~R~~~~~~~~~l~k~~p~K~L~~~~~~~~GRNn~GrITvrhRGGGhKr~yR~IDf~r~-~~~~~~~V~ 79 (278)
|+||+|||+|||+||++++++++||+++|+|+|++++++++||||+||||+|||||||||+||+|||+|. +.+++++|+
T Consensus 1 M~~k~~kp~tp~~R~~~~~~~~~l~k~~P~k~l~~~~~k~~GRNn~GrITvrhrGGGhKr~yR~IDf~r~~~~~~~~~V~ 80 (276)
T 2j01_D 1 MAVKKFKPYTPSRRFMTVADFSEITKTEPEKSLVKPLKKTGGRNNQGRITVRFRGGGHKRLYRIIDFKRWDKVGIPAKVA 80 (276)
T ss_dssp -CCBCCCCSSTTTTTCCBCCCTTSTTCCSCCSSSSCBCCCCCSBSSSSBSSTTBCCCCCCCBCCCCCCCGGGTTCCEEEE
T ss_pred CCCCCCCCCCCCCCCEEECCCCCEECCCCCHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCEEE
T ss_conf 98442379598678658525787386985465435366668858782088873579767347998814313578652378
Q ss_pred EEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCEEEEEEC
Q ss_conf 76415885258898414776346751645661045788366676757574110443574637762333036882588634
Q gi|254780258|r 80 RLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSA 159 (278)
Q Consensus 80 ~IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~i~~Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsA 159 (278)
+|||||||||+||||.|+||+++|||||++|++||.|+++..+ ++++||++||.+||+||+|||||+.||+||||||||
T Consensus 81 ~IeyDPnRsa~IALv~~~~g~~~YIlAp~gl~~Gd~I~~~~~~-~~~~Gn~lpL~~iP~Gt~I~NIE~~pg~Ggkl~RsA 159 (276)
T 2j01_D 81 AIEYDPNRSARIALLHYVDGEKRYIIAPDGLQVGQQVVAGPDA-PIQVGNALPLRFIPVGTVVHAVELEPKKGAKLARAA 159 (276)
T ss_dssp ECCCCTTCSSCEEEEEETTSCEEEEECCTTCCTTCEECBSSSS-CSSTTCEEEGGGSCTTCEEESEESSTTSCEEESCSS
T ss_pred EEEECCCCCCEEEEEEECCCCEEEEECCHHCCCCCEECCCCCC-CCCCCCCCCHHHCCCCCEEEEEEECCCCCEEEEEEC
T ss_conf 9997689874079999369928987477422247431047767-775477147735889878421553389950699746
Q ss_pred CCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 65189967508889999489758998567809998512553323001313441005779970123326874788888888
Q gi|254780258|r 160 GSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGK 239 (278)
Q Consensus 160 Gt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~~~~~~~gKAG~~Rwlg~RP~VRGvAMNpvDHPhGGGeGk 239 (278)
||||+|+++++++++|||||||+++|+++|+||||+|||.+|++++++|||++||||+||+||||||||||||||||||+
T Consensus 160 Gt~A~Ii~k~~~~~~vkLPSge~r~i~~~c~AtiG~vsn~~~~~~~~gKAG~~r~lg~RP~VRGvAMNpvdHPhGGG~gk 239 (276)
T 2j01_D 160 GTSAQIQGREGDYVILRLPSGELRKVHGECYATVGAVGNADHKNIVLGKAGRSRWLGRRPHVRGAAMNPVDHPHGGGEGR 239 (276)
T ss_dssp SCCEEECCCBTTEEEEECTTSCEEEEETTSEEEESCCSCGGGGGCCCCSHHHHTTTTBCCCCCSSSSCTTTCSSCCSSSS
T ss_pred CCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEECCCCCHHCCCCCCCCHHHCCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 98499999739868999558666975687889998826832000300476554548999977730238887998998989
Q ss_pred CCCCCCCCCCCCEECCCCCCCCC-CCCCEEEEEECCC
Q ss_conf 88888788788734377254888-8886149962346
Q gi|254780258|r 240 TSGGRNPCSPWGKLTKGKRTRSN-KSTDVFIARSRHK 275 (278)
Q Consensus 240 t~~gr~~~spwG~~~kg~kTr~~-k~~~~~i~~~r~~ 275 (278)
+++|++|+||||++|+|++||++ |.+|+||+++|++
T Consensus 240 ~~~gr~p~spwG~~~kg~ktrk~~k~~~~~i~~~rkk 276 (276)
T 2j01_D 240 APRGRPPASPWGWQTKGLKTRKRRKPSSRFIIARRKK 276 (276)
T ss_dssp CCCSSSCBCTTCCBCSSCCCSCTTSSCCSSEEC----
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 8987669798887589866788888877678863579
No 2
>3ofq_C 50S ribosomal protein L2; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_C 2wwq_C 3ofr_C* 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C 3df2_C 3df4_C 1vt2_C 3i1p_C 3i1r_C 3i1t_C 3i20_C 3i22_C 3kcr_6 ...
Probab=100.00 E-value=0 Score=798.10 Aligned_cols=271 Identities=56% Similarity=0.950 Sum_probs=264.8
Q ss_pred CCEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCEEEEEE
Q ss_conf 75011588841051087045764168872221115543677588984878864787510268798863377760478876
Q gi|254780258|r 2 ALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKNRYRLVDFKRGEYGLEGVVKRL 81 (278)
Q Consensus 2 ~~k~~kP~Tp~~R~~~~~~~~~l~k~~p~K~L~~~~~~~~GRNn~GrITvrhRGGGhKr~yR~IDf~r~~~~~~~~V~~I 81 (278)
||++|||+|||+||++++++++||+++|+|+|+.++++++||||+|+||+|||||||||+||+|||+|++.+++++|++|
T Consensus 1 a~~~~kP~tpg~R~~~~~~~~~l~k~~p~k~L~~~~~k~~GRNn~GrIT~rhrGGGhKr~yr~Idf~r~k~~i~~~V~~I 80 (271)
T 3ofq_C 1 AVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRNNNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERL 80 (271)
T ss_dssp CCCCCCSSSTTTSSCCCCCCTTSCCSCCCGGGCCCCCCCTTBCSSCSBSSSSBCCSCCCCCCCCCSSCCCTTCCEECCCE
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEE
T ss_conf 97432795986786683468865979835665165767788699967878701786650157874215168977899999
Q ss_pred EECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCEEEEEECCC
Q ss_conf 41588525889841477634675164566104578836667675757411044357463776233303688258863465
Q gi|254780258|r 82 EYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGS 161 (278)
Q Consensus 82 eYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~i~~Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsAGt 161 (278)
||||||||+||||.|.||+++|||||+||++||.|.++.++ ++++||++||.+||+||+|||||+.||+||||||||||
T Consensus 81 eyDPnRsa~IAlv~~~dg~~~YIlap~gl~vGd~I~sg~~~-~~~~Gn~lpL~~IP~Gt~I~NIE~~pg~Ggk~aRSAGt 159 (271)
T 3ofq_C 81 EYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQSGVDA-AIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGT 159 (271)
T ss_dssp ECCTTSSSCEEECCBSSSCCCEEECBSCCCTTCEECBSSSC-CCSTTCBCCGGGSCTTCBCCSCCSSTTTCCCSSCSTTC
T ss_pred EECCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEEECCCC-CCCCCCCCCHHHCCCCCEEEEEEECCCCCCEEEEECCC
T ss_conf 97899873179998169958988886878689889858888-76666637175388987788766328997559840785
Q ss_pred EEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 18996750888999948975899856780999851255332300131344100577997012332687478888888888
Q gi|254780258|r 162 YARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGKTS 241 (278)
Q Consensus 162 ~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~~~~~~~gKAG~~Rwlg~RP~VRGvAMNpvDHPhGGGeGkt~ 241 (278)
||||+++|+++++|||||||+++|+++|+||||+|||.+|.+++++|||++||||+||+|||||||||||||||||+++
T Consensus 160 ~A~ii~k~~~~~~vkLPSGe~r~i~~~c~AtiG~vsn~~~~~~~~gKAG~~r~~g~rP~VRGvAMNpvdHPhGGg~~~~- 238 (271)
T 3ofq_C 160 YVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGRN- 238 (271)
T ss_dssp CCEEEECCSSCEEEECTTCCEEEECSCSCCCSSCBSCCTTTTCCCCSHHHHHTTTBCCCCCGGGSCTTTSTTCCCSSSC-
T ss_pred EEEEEEECCCEEEEEECCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCC-
T ss_conf 7999996098899981577869988878799977128135545667588874079998434104487768989988888-
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCEEEEEECC
Q ss_conf 888788788734377254888888614996234
Q gi|254780258|r 242 GGRNPCSPWGKLTKGKRTRSNKSTDVFIARSRH 274 (278)
Q Consensus 242 ~gr~~~spwG~~~kg~kTr~~k~~~~~i~~~r~ 274 (278)
+|++|+||||++|||+|||++|+||+||+++|.
T Consensus 239 ~g~~p~spwG~~~kg~ktr~~k~~~~~i~~rr~ 271 (271)
T 3ofq_C 239 FGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRS 271 (271)
T ss_dssp CCSCCBCTTSCBCSSCCCCCCSSGGGGEEECCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
T ss_conf 996988988615898758998887886986379
No 3
>3bbo_E Ribosomal protein L2; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=0 Score=788.18 Aligned_cols=266 Identities=44% Similarity=0.816 Sum_probs=257.8
Q ss_pred CCCEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCEEEE
Q ss_conf 9750115888410510870457641688722211155436-775889848788647875102687988633777604788
Q gi|254780258|r 1 MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSK-GGRNNTGRVTMRFRGGGHKNRYRLVDFKRGEYGLEGVVK 79 (278)
Q Consensus 1 M~~k~~kP~Tp~~R~~~~~~~~~l~k~~p~K~L~~~~~~~-~GRNn~GrITvrhRGGGhKr~yR~IDf~r~~~~~~~~V~ 79 (278)
|+||+|||+|||+||+++ +|+++|+|+|+++++++ +||||+|+||||||||||||+||+|||+|++.+++++|+
T Consensus 1 M~~k~~kP~tp~~R~~~~-----~~k~~p~k~L~~~~~~~~~GRNn~GrITvrhrGGGhKr~yR~IDf~r~~~~i~~~V~ 75 (269)
T 3bbo_E 1 MAIHLYKTSTSSTRNGAV-----QVKSNPRNNLISGQRRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGKIV 75 (269)
T ss_dssp ---CCSSSCCCCCCSSSS-----CCCCCCCCCCCSCCCCCCCSCSCCSSCCCSCCCCCSCCCCCCCCCSCCCCSCCCCCC
T ss_pred CCCCCCCCCCCCCCCCEE-----EECCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEECCCCCEEEE
T ss_conf 985433694988788578-----805870202222445788641898788678616875504446001230279776999
Q ss_pred EEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCEEEEEEC
Q ss_conf 76415885258898414776346751645661045788366676757574110443574637762333036882588634
Q gi|254780258|r 80 RLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSA 159 (278)
Q Consensus 80 ~IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~i~~Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsA 159 (278)
+|||||||||+||||.|+||+++|||||++|++||.|+++.++ ++++||++||.+||+||+|||||+.||+||||||||
T Consensus 76 ~IeyDP~Rsa~IAlv~~~~g~~~YIlAp~gl~vGd~I~~g~~~-~~~~Gn~lpL~~IP~Gt~I~NIE~~pg~Ggkl~RsA 154 (269)
T 3bbo_E 76 TIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEV-PIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAA 154 (269)
T ss_dssp CCCCCSSSCSCCCCCCCSSCCCCCCCCCSSCSSCCCCCCSSSC-CCSSCSCEEGGGCSSCSSCCCCCSSSSCCCSSCCTT
T ss_pred EEEECCCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEECCCC-CCCCCCCCCHHHCCCCCEEEEEEECCCCCCEEEECC
T ss_conf 9996999973589997179978997476668579788756756-656366067602889878762661599985699627
Q ss_pred CCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 65189967508889999489758998567809998512553323001313441005779970123326874788888888
Q gi|254780258|r 160 GSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGK 239 (278)
Q Consensus 160 Gt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~~~~~~~gKAG~~Rwlg~RP~VRGvAMNpvDHPhGGGeGk 239 (278)
||||||++||+++++|||||||+++|+++|+||||+|||.+|.+++++|||++||||+||+||||||||||||||||||+
T Consensus 155 Gt~A~ii~k~~~~~~IkLPSGe~r~i~~~C~AtIG~vsn~~~~~~~~gKAG~~r~lg~rP~VRGvAMNpvDHPhGGG~gk 234 (269)
T 3bbo_E 155 GAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKRLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGR 234 (269)
T ss_dssp TCCCBCCSSCSTTCCCBCSTTCBCCCCSSCEECSCCCCCSHHHHSCCCSSSSSSTTTCSCSCCCCCSCTTTSSSCCSSSC
T ss_pred CCEEEEEEECCCCEEEECCCCCEEEECCCCEEEEEECCCHHHCCCCCCCCHHHHCCCCCCCCCEECCCCCCCCCCCCCCC
T ss_conf 88499999717827895688667875778869999906834508740468046608989960350679876897998889
Q ss_pred CCCCC-CCCCCCCEECCCCCCCC-CCCCCEEEEEE
Q ss_conf 88888-78878873437725488-88886149962
Q gi|254780258|r 240 TSGGR-NPCSPWGKLTKGKRTRS-NKSTDVFIARS 272 (278)
Q Consensus 240 t~~gr-~~~spwG~~~kg~kTr~-~k~~~~~i~~~ 272 (278)
+++|+ +|+||||++|||++||+ +|+||+|||+|
T Consensus 235 ~~~gr~~p~spwG~~~kg~ktRk~~k~s~~~i~~r 269 (269)
T 3bbo_E 235 APIGRKSPTTPWGYPALGRRSRKRNKYSDNFIIRR 269 (269)
T ss_dssp CCTTSSCCSSSCCCSCCCCCCCSSSCCCCBCCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 98879499799863189877899998777868769
No 4
>2zkr_a 60S ribosomal protein L8; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1i_B 3jyw_B
Probab=100.00 E-value=0 Score=632.01 Aligned_cols=233 Identities=28% Similarity=0.480 Sum_probs=219.5
Q ss_pred CCCCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCEEEEEEEECCCCEEEEEEEECCCCCE-----EEEECCCCCCCC
Q ss_conf 367758898487886478751026879886337776047887641588525889841477634-----675164566104
Q gi|254780258|r 39 SKGGRNNTGRVTMRFRGGGHKNRYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSL-----AYILAPQRLSVG 113 (278)
Q Consensus 39 ~~~GRNn~GrITvrhRGGGhKr~yR~IDf~r~~~~~~~~V~~IeYDPnRsa~IALv~~~~g~~-----~YIlAp~gl~vG 113 (278)
.+.||||+||||+|||||||| ||.|||.|.+.+++++|++|||||||||+||||.|+|+++ +|||||++|++|
T Consensus 8 qr~Gr~~~grit~rhrggg~k--yR~iDf~r~~~~~~g~V~~IeyDPnRsa~IAlv~~~dg~k~~~~~~yIiA~~gl~~G 85 (257)
T 2zkr_a 8 QRKGAGSVFRAHVKHRKGAAR--LRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTG 85 (257)
T ss_dssp HHGGGCSTTSCCGGGCCCCCC--CCCCCTTTCTTCEEEEEEEEEEETTTTEEEEEEEESSCCSSSSSCCEECCBSSCBTT
T ss_pred CCCCCCCCCEEECCCCCCCCC--CCCCCCHHCCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEECCCCCCCC
T ss_conf 337899897770200178755--575571311598118999999669987047999921564357736899777886236
Q ss_pred CEEEECCCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEE--CCCEEEEEECCCCEEEECCCCEE
Q ss_conf 5788366676757574110443574637762333036882588634651899675--08889999489758998567809
Q gi|254780258|r 114 DKVISSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVER--DRSRALLRLSSGEMRFVHSSCMA 191 (278)
Q Consensus 114 d~I~s~~~~~~i~~Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsAGt~a~Ii~k--~~~~~~ikLPSGe~r~i~~~c~A 191 (278)
|+|.++.++ ++++||++||.+||+||+|||||+.||+||||||||||||||++| |+++|+|||||||+++|+++|+|
T Consensus 86 d~I~~~~~~-~~~~GN~lpL~~IP~Gt~I~NIE~~pg~Ggkl~RSAGt~A~Ii~k~~~~~~~~vkLPSGe~r~i~~~c~A 164 (257)
T 2zkr_a 86 QFVYCGKKA-QLNIGNVLPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRA 164 (257)
T ss_dssp CEEEESTTC-CSCTTCEEEGGGSCTTEEEESBCSSTTSCCCBSCSTTCCEEEEECCSSSSCEEEECTTSCEEEECTTCEE
T ss_pred CEECCCCCC-CCCCCCCCCHHHCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEEECCCCEEEEECCCCCEEEECCCCCE
T ss_conf 465035533-2366664388569999776307615997204754178658998874268679997789786886401755
Q ss_pred EEEEECCCCCCCCCCCCCCCCC-----CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC---CCCCEECCCCCCCC-C
Q ss_conf 9985125533230013134410-----0577997012332687478888888888888788---78873437725488-8
Q gi|254780258|r 192 SIGAVSNQDHSNVNHAKAGRAR-----WLGMRSHVRGVAMNPVDHPHGGGEGKTSGGRNPC---SPWGKLTKGKRTRS-N 262 (278)
Q Consensus 192 tIG~vsN~~~~~~~~gKAG~~R-----wlg~RP~VRGvAMNpvDHPhGGGeGkt~~gr~~~---spwG~~~kg~kTr~-~ 262 (278)
|||+|||.+|.+++++|||++| |+++||+||||||||||||||||||++.+++++| ||||+.+++.+||+ .
T Consensus 165 TIG~vSn~~~~~~~l~KAG~~~~~~~~~r~~rP~VRGvAMNpVDHPHGGG~~~~~g~~~~v~~~~p~G~~~~~~~~rrtg 244 (257)
T 2zkr_a 165 VVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAARRTG 244 (257)
T ss_dssp EESCBSCTTTTTSCCCSHHHHHHHHHTSSCCCSCCCGGGSCCC-CTTCCSSSCCCSSCCCBCTTCCGGGCCSSBTCSCCC
T ss_pred EEEEECCCCCCCCHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCC
T ss_conf 78986277400224434462444330348999865732227777998998999999998888879998885773344167
Q ss_pred CCCCEEEEEECC
Q ss_conf 888614996234
Q gi|254780258|r 263 KSTDVFIARSRH 274 (278)
Q Consensus 263 k~~~~~i~~~r~ 274 (278)
++.++.++++|.
T Consensus 245 r~~~~~~~~~~~ 256 (257)
T 2zkr_a 245 RLRGTKTVQEKE 256 (257)
T ss_dssp CC----------
T ss_pred CCCCCEEEECCC
T ss_conf 656870212256
No 5
>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ...
Probab=100.00 E-value=0 Score=582.52 Aligned_cols=221 Identities=36% Similarity=0.585 Sum_probs=208.2
Q ss_pred CCCEEEEEECCCCCCEEEEEEEEECCC-CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCC
Q ss_conf 984878864787510268798863377-7604788764158852588984147763467516456610457883666767
Q gi|254780258|r 46 TGRVTMRFRGGGHKNRYRLVDFKRGEY-GLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVD 124 (278)
Q Consensus 46 ~GrITvrhRGGGhKr~yR~IDf~r~~~-~~~~~V~~IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~ 124 (278)
.|++|++||+++|+++|+.+||+++.. .++++|++|||||||||+||||.|+||+++||||||||++||+|.++..+ +
T Consensus 10 rGrg~~~~R~~~h~~~~~~~~~~~~~~~~i~g~V~~IeyDPnRsa~IAlv~~~dg~~~YIlAp~g~~vGd~I~~g~~~-~ 88 (240)
T 1vq8_A 10 RGRGTSTFRAPSHRYKADLEHRKVEDGDVIAGTVVDIEHDPARSAPVAAVEFEDGDRRLILAPEGVGVGDELQVGVSA-E 88 (240)
T ss_dssp HTTCCGGGSCCGGGCCCCCCCCCCCSSSCCEEEEEEEEEETTTTEEEEEEEETTSCEEEECCBTTCBTTCEEEBSTTC-C
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEEECCCC-C
T ss_conf 799988077999331540124774436741389999898989983189999479988999834898588789968765-4
Q ss_pred CCCCCCHHHHHCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCCC
Q ss_conf 57574110443574637762333036882588634651899675088899994897589985678099985125533230
Q gi|254780258|r 125 VKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNV 204 (278)
Q Consensus 125 i~~Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsAGt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~~~~~ 204 (278)
+++||++||.+||+||+|||||+.||+||||||||||||||++||+++++|||||||+++|+++|+||||+|||.+|.++
T Consensus 89 ~~~Gn~~pL~~IP~Gt~IhNIE~~pg~Ggkl~RsAGt~a~ii~k~~~~v~vkLPSGe~r~i~~~c~ATIG~vsn~~~~~~ 168 (240)
T 1vq8_A 89 IAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHDRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDK 168 (240)
T ss_dssp SCTTCEEEGGGSCTTCEEESBCSSTTSCCCBSCSTTCCEEEEECCSSCEEEECTTSCEEEECTTCEEEESCBTTTTTTTS
T ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEEECCCEEEEECCCCCEEEECCCCEEEEEEECCCCCHHH
T ss_conf 47652716211899988788884089842588726852899995499899984897868637778089837506630233
Q ss_pred CCCCCCCCCCCCCC-----CCCCEEEECCCCCCCCCCCCCCCCCCCCC---CCCCEECCCCCCCCC-CCCCE
Q ss_conf 01313441005779-----97012332687478888888888888788---788734377254888-88861
Q gi|254780258|r 205 NHAKAGRARWLGMR-----SHVRGVAMNPVDHPHGGGEGKTSGGRNPC---SPWGKLTKGKRTRSN-KSTDV 267 (278)
Q Consensus 205 ~~gKAG~~Rwlg~R-----P~VRGvAMNpvDHPhGGGeGkt~~gr~~~---spwG~~~kg~kTr~~-k~~~~ 267 (278)
+++|||++||++++ |+||||||||||||||||||+++++..++ +|||+.+++.+||+. +.+|+
T Consensus 169 ~lgKAG~~r~~~r~~~~r~P~VRGvAMNpvDHPHGGG~~~~~g~~~~v~~~~p~g~k~~~i~~Rr~~r~~~k 240 (240)
T 1vq8_A 169 PFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVGDIASKRTGRGGNE 240 (240)
T ss_dssp CCCSHHHHHHHHTTSSCCCSCCCGGGSCGGGCTTCCSSSCCCSSCSEECTTCCTTTCCSEETCSCCSSCC--
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEECCCCCCCCCC
T ss_conf 655553554311024675994332111887699899898989899888887999888078815658987798
No 6
>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
Probab=100.00 E-value=0 Score=519.01 Aligned_cols=173 Identities=47% Similarity=0.853 Sum_probs=168.6
Q ss_pred EEEEEEEEECCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCC
Q ss_conf 26879886337776047887641588525889841477634675164566104578836667675757411044357463
Q gi|254780258|r 61 RYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGS 140 (278)
Q Consensus 61 ~yR~IDf~r~~~~~~~~V~~IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~i~~Gn~lpL~~IP~Gt 140 (278)
+||+|||+|++.+++++|++|||||||||+||||.|.||+++|||||++|++||+|.++..+ ++++||++||.+||+||
T Consensus 1 kYR~IDf~R~~~~~~~~V~~IeyDP~Rsa~IAlv~~~~g~~~yila~~~~~~Gd~i~~~~~~-~~~~Gn~~pL~~iP~Gt 79 (178)
T 1giy_D 1 QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADGEKRYIIAPKNLKVGMEIMSGPDA-DIKIGNALPLENIPVGT 79 (178)
T ss_pred CCCEEEEEECCCCCCEEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEECCCCC-CCCCCCEECCCCCCCCC
T ss_conf 98858041157999889999998999982299999079989996555541145257606637-88886585646689987
Q ss_pred EEEEEEEECCCCEEEEEECCCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCC----
Q ss_conf 7762333036882588634651899675088899994897589985678099985125533230013134410057----
Q gi|254780258|r 141 IVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLG---- 216 (278)
Q Consensus 141 ~I~NIE~~pG~Ggkl~RsAGt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~~~~~~~gKAG~~Rwlg---- 216 (278)
+|||||+.||+||||||||||||+|++|++++++|||||||+|+|+++|+||||+|||.+|++++++|||++||++
T Consensus 80 ~I~NIE~~pg~Gg~~~RsAGt~A~ii~k~~~~v~ikLpSge~r~i~~~C~AtIG~vsn~~~~~~~lgKAG~~r~~~k~r~ 159 (178)
T 1giy_D 80 LVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRMILGKCRATVGEVGNGGRTDKPFVKAGNKHHKMKARG 159 (178)
T ss_pred EEEEEECCCCCCCEEEEECCCEEEEEEECCCEEEEECCCHHHEEECCCCEEEEEEECCCCHHCCEEECCCCHHHCCCCCC
T ss_conf 98722117998656998369848999971888889878632132266786998072388600067410271231401256
Q ss_pred -CCCCCCEEEECCCCCCCC
Q ss_conf -799701233268747888
Q gi|254780258|r 217 -MRSHVRGVAMNPVDHPHG 234 (278)
Q Consensus 217 -~RP~VRGvAMNpvDHPhG 234 (278)
+||+||||||||||||||
T Consensus 160 ~~~P~VRGvAmNpvDHPHG 178 (178)
T 1giy_D 160 TKWPNVRGVAMNAVDHPFG 178 (178)
T ss_pred CCCCCCCCCCCCCCCCCCC
T ss_conf 8799636200188779898
No 7
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=100.00 E-value=0 Score=370.55 Aligned_cols=137 Identities=49% Similarity=0.925 Sum_probs=134.3
Q ss_pred EEEEEEEEECCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCC
Q ss_conf 26879886337776047887641588525889841477634675164566104578836667675757411044357463
Q gi|254780258|r 61 RYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGS 140 (278)
Q Consensus 61 ~yR~IDf~r~~~~~~~~V~~IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~i~~Gn~lpL~~IP~Gt 140 (278)
+||+|||+|++.+++++|++|||||||||+||||+|.||+++|||||++|++||.|.++.++ ++++||++||.+||+||
T Consensus 1 kYR~IDf~r~~~~i~g~V~~I~yDP~Rsa~IAlv~~~~g~~~yila~~g~~~G~~i~~g~~~-~~~~Gn~~pL~~iP~Gt 79 (137)
T 1rl2_A 1 QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADGEKRYIIAPKNLKVGMEIMSGPDA-DIKIGNALPLENIPVGT 79 (137)
T ss_dssp CCSCBCSSCCCTTCCEEEEEEEEEGGGTEEEEEEEETTSCEEEEECCTTCCTTCEECBSTTC-CSCTTCEEEGGGSCTTC
T ss_pred CCCCEEEEECCCCCCEEEEEEEECCCCCCCEEEEEECCCCEEEEECCHHCCCCCEEECCCCC-CCCCCCCCCHHHCCCCC
T ss_conf 98708230768999799999998999986189999489999999672340375377128747-76778761650488986
Q ss_pred EEEEEEEECCCCEEEEEECCCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECC
Q ss_conf 7762333036882588634651899675088899994897589985678099985125
Q gi|254780258|r 141 IVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSN 198 (278)
Q Consensus 141 ~I~NIE~~pG~Ggkl~RsAGt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN 198 (278)
+|||||+.||+||+|||||||||+|++|++++++|||||||+|+|+++|+||||+|||
T Consensus 80 ~I~nIE~~pG~Ggk~~RsAGt~A~ii~k~~~~~~vkLpSg~~r~i~~~c~AtIG~vSN 137 (137)
T 1rl2_A 80 LVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRMILGKCRATVGEVGN 137 (137)
T ss_dssp EEESEESSTTSCEEESSSSSCCEEEEEEETTEEEEECTTSCEEEEETTSEEEESCCC-
T ss_pred EECCEEECCCCCCEEEEECCCEEEEEEECCCEEEEECCCCCEEEECCCCEEEEEEECC
T ss_conf 8213510699950899717984999997199999988997978999758099987179
No 8
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=100.00 E-value=0 Score=361.49 Aligned_cols=132 Identities=37% Similarity=0.640 Sum_probs=126.7
Q ss_pred EEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCC----CCCCCCCCCHHHHHCCCCCEEEEEEEECCCCE
Q ss_conf 88764158852588984147763467516456610457883666----76757574110443574637762333036882
Q gi|254780258|r 78 VKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDS----AVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGG 153 (278)
Q Consensus 78 V~~IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~----~~~i~~Gn~lpL~~IP~Gt~I~NIE~~pG~Gg 153 (278)
|++|||||||||+||||.+ +++++|||||+||++||.|.++.+ ..++++||++||.+||+||.|||||+.||+||
T Consensus 1 V~~IeyDPnRsa~IAlv~~-~~~~~YIlA~~gl~vGd~I~s~~~~~~~~~~~k~Gn~~pL~~IP~Gt~I~NIE~~pg~Gg 79 (136)
T 2ftc_B 1 VIQVRYDPCRSADIALVAG-GSRKRWIIATENMQAGDTILNSNHIGRMAVAAREGDAHPLGALPVGTLINNVESEPGRGA 79 (136)
T ss_pred CEEEEECCCCCCEEEEEEC-CCCEEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECCCCCE
T ss_conf 9678989999806999972-997599997589403678997985665645566656736756999878886886599955
Q ss_pred EEEEECCCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 588634651899675088899994897589985678099985125533230013134
Q gi|254780258|r 154 QISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVNHAKAG 210 (278)
Q Consensus 154 kl~RsAGt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~~~~~~~gKAG 210 (278)
||||||||||||++|++++++|||||||+|+|+++|+||||+|||.+|+++++||||
T Consensus 80 k~~RsAGt~a~ii~k~~~~~~vkLpSge~r~i~~~C~ATIG~vsN~~~~~~~~gKAG 136 (136)
T 2ftc_B 80 QYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLETCVATVGRVSNVDHNKRVIGKAG 136 (136)
T ss_pred EEEECCCCEEEEEEECCCEEEEECCCCCEEEECCCCEEEEEECCCCCCCCCEECCCC
T ss_conf 999708876999995498899988990789868888099817218672445655659
No 9
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, periplasm, translation; 2.80A {Escherichia coli K12} PDB: 3deg_C*
Probab=71.28 E-value=4.9 Score=18.86 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=11.3
Q ss_pred CEEEEEEEECCCCEEEEEEEECCCC
Q ss_conf 0478876415885258898414776
Q gi|254780258|r 75 EGVVKRLEYDPNRTAFIALISYSNG 99 (278)
Q Consensus 75 ~~~V~~IeYDPnRsa~IALv~~~~g 99 (278)
.+.|..+.|||++.. |++++-.+|
T Consensus 192 ~alvf~~~~D~y~G~-i~~~RV~~G 215 (599)
T 3cb4_D 192 QALIIDSWFDNYLGV-VSLIRIKNG 215 (599)
T ss_dssp EEEEEEEEEETTTEE-EEEEEEEES
T ss_pred EEEEEEEECCCCCCE-EEEEEEECC
T ss_conf 799996000588878-999999789
No 10
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein structure initiative; 1.85A {Shewanella oneidensis mr-1} SCOP: b.40.14.1
Probab=68.52 E-value=5.7 Score=18.48 Aligned_cols=50 Identities=16% Similarity=0.207 Sum_probs=35.9
Q ss_pred EEEEECCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEE---ECCCCCCCCCEEEEC
Q ss_conf 9886337776047887641588525889841477634675---164566104578836
Q gi|254780258|r 65 VDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYI---LAPQRLSVGDKVISS 119 (278)
Q Consensus 65 IDf~r~~~~~~~~V~~IeYDPnRsa~IALv~~~~g~~~YI---lAp~gl~vGd~I~s~ 119 (278)
.||+--=.++|++|++|+=| ..+|+|.+. |..+-+ |-|+..++||.|...
T Consensus 17 ~~~~~MCLaIP~kVveI~~~----~~~A~Vd~~-Gv~reV~l~Lv~e~v~vGDyVLVH 69 (103)
T 3d3r_A 17 LYFQGMCLSIPSQVVAVDNE----RQSVTVDTL-GVRRDVSSHLMTEPLAIGDYVLIH 69 (103)
T ss_dssp TEEETTEECCCEEEEEEETT----TTEEEEEET-TEEEEEECTTBSSCCCTTCEEEEE
T ss_pred CCCCCCEEEECEEEEEECCC----CCEEEEECC-CEEEEEEEECCCCCCCCCCEEEEE
T ss_conf 76652105115199999298----888999679-949999810156788899899995
No 11
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=63.72 E-value=1.2 Score=22.94 Aligned_cols=24 Identities=38% Similarity=0.781 Sum_probs=16.6
Q ss_pred CCCCCCCCCCCCC--CCCCCCCEECC
Q ss_conf 8888888888888--78878873437
Q gi|254780258|r 232 PHGGGEGKTSGGR--NPCSPWGKLTK 255 (278)
Q Consensus 232 PhGGGeGkt~~gr--~~~spwG~~~k 255 (278)
-.|||-|-..+|+ +|-||||+...
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~g~~~~ 62 (505)
T 3few_X 37 HWGGGSGSGNGGREHGSQTGWGWSKT 62 (505)
T ss_dssp --------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHC
T ss_conf 65788899998777899998422330
No 12
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxane, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=48.11 E-value=12 Score=16.21 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=38.1
Q ss_pred CCCCEEEEEEEECCCCEEE--EEECCCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCC
Q ss_conf 7463776233303688258--863465189967508889999489758998567809998512553
Q gi|254780258|r 137 PVGSIVHNVEMKPGKGGQI--SRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQD 200 (278)
Q Consensus 137 P~Gt~I~NIE~~pG~Ggkl--~RsAGt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~ 200 (278)
-+|-.|+=+ |+. +++.|..+++..-|+..++|+|++..- .......-.||+|++.+
T Consensus 41 fvGk~VriV-------GkV~~v~~~g~~~~l~ssDg~~VtV~L~~p~~-~~~~~~VEViG~V~~d~ 98 (142)
T 2pi2_E 41 FIDKPVCFV-------GRLEKIHPTGKMFILSDGEGKNGTIELMEPLD-EEISGIVEVVGRVTAKA 98 (142)
T ss_dssp STTCEEEEE-------EEEEEECTTSSEEEEECTTSCEEEEECSSCCS-SCCCSEEEEEEEECTTS
T ss_pred CCCCEEEEE-------EEEEEECCCCCEEEEECCCCCEEEEEECCCCC-CCCCCEEEEEEEECCCC
T ss_conf 089769999-------99988769998899994999999999689888-88887799999989999
No 13
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=45.81 E-value=2.1 Score=21.29 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=12.6
Q ss_pred EEEEECCCCCCEEEEEEEECCCCEEEEE
Q ss_conf 9886337776047887641588525889
Q gi|254780258|r 65 VDFKRGEYGLEGVVKRLEYDPNRTAFIA 92 (278)
Q Consensus 65 IDf~r~~~~~~~~V~~IeYDPnRsa~IA 92 (278)
|-||+.......+|.+|+....||..|.
T Consensus 309 iA~Kf~~e~~~T~v~dI~~qvGRtG~it 336 (667)
T 1dgs_A 309 LAYKFPAEEKETRLLDVVFQVGRTGRVT 336 (667)
T ss_dssp EEEECCCCCEEEEEEEEEEEECTTSBEE
T ss_pred EEECCHHHHCCEEEEEEEEEECCCCCCC
T ss_conf 7612525421204426999833787313
No 14
>2owo_A DNA ligase; protein/DNA complex, ligase/DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli K12}
Probab=37.80 E-value=11 Score=16.61 Aligned_cols=56 Identities=27% Similarity=0.338 Sum_probs=29.8
Q ss_pred EEEEEECCCCCCEEEEEEEECCCCEEEEEEEEC-----CCCCE-EE-------EECCCCCCCCCEEEEC
Q ss_conf 798863377760478876415885258898414-----77634-67-------5164566104578836
Q gi|254780258|r 64 LVDFKRGEYGLEGVVKRLEYDPNRTAFIALISY-----SNGSL-AY-------ILAPQRLSVGDKVISS 119 (278)
Q Consensus 64 ~IDf~r~~~~~~~~V~~IeYDPnRsa~IALv~~-----~~g~~-~Y-------IlAp~gl~vGd~I~s~ 119 (278)
.|-||+.......+|.+|+....||..|.-|.. .+|.. ++ .+.-.++.+||.|...
T Consensus 310 aiA~Kf~~~~~~T~v~~I~~qVGRtG~itPva~lePV~l~G~tVsraTLhN~~~I~~~~i~iGd~V~I~ 378 (671)
T 2owo_A 310 AVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIR 378 (671)
T ss_dssp EEEEECCCCEEEEEEEEEEEEECTTSBEEEEEEEEEEEETTEEEEEEECCSHHHHHHHTCCBTCEEEEE
T ss_pred EEEEECCHHHHEEEEEEEEEEECCCCEEEEEEEEEEEEECCEEEEECCCCCHHHHHHCCCCCCCEEEEE
T ss_conf 689840303134653447998437844637999845982465888713378899997696539878987
No 15
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=36.14 E-value=19 Score=15.02 Aligned_cols=72 Identities=8% Similarity=0.193 Sum_probs=36.7
Q ss_pred EEEEEEECCCCEEEE----EEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCEEEEEEEECC
Q ss_conf 788764158852588----98414776346751645661045788366676757574110443574637762333036
Q gi|254780258|r 77 VVKRLEYDPNRTAFI----ALISYSNGSLAYILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKPG 150 (278)
Q Consensus 77 ~V~~IeYDPnRsa~I----ALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~i~~Gn~lpL~~IP~Gt~I~NIE~~pG 150 (278)
.+..|+-.-+|+-.. -++.+.+++..++ ..+.|++||.+..-... .+..-....+..++.-..|||++....
T Consensus 85 ~~~~I~~~~g~~i~~T~~Hp~~v~~~~~~~~~-~a~~L~~GD~l~~~~~~-~~~~~~i~~Ie~~~~~~~VYdl~Ve~~ 160 (186)
T 2jmz_A 85 KLIKITTKNRREITLTHDHPVYISKTGEVLEI-NAEMVKVGDYIYIPKNN-TINLDEVIKVETVDYNGHIYDLTVEDN 160 (186)
T ss_dssp EEECCCCTTSCCCCBCTTCEEEEEETTEEEEE-EGGGCCTTSEEEEECSS-SEEEEECCCCCEEEECSCEEEEECTTT
T ss_pred EEEEEEECCCCEEEEECCEEEEEECCCEEEEE-EEEECCCCCEEEEECCC-CCCEEEEEEEEEECCCCEEEEEEECCC
T ss_conf 39999988998999608989999649959887-81077899899996254-530577899985639987998198899
No 16
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal binding protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=34.99 E-value=20 Score=14.90 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=28.9
Q ss_pred CCCCEEEEEEEECCCCEEEEEEEECCCCCEEEE---ECCCCCCCCCEEEECC
Q ss_conf 776047887641588525889841477634675---1645661045788366
Q gi|254780258|r 72 YGLEGVVKRLEYDPNRTAFIALISYSNGSLAYI---LAPQRLSVGDKVISSD 120 (278)
Q Consensus 72 ~~~~~~V~~IeYDPnRsa~IALv~~~~g~~~YI---lAp~gl~vGd~I~s~~ 120 (278)
.++|++|+.|+- .+|++.+. |..+.+ |-| ..++||.|...-
T Consensus 3 LaiP~~Vvei~~------~~A~vd~~-G~~r~v~l~lv~-~~~vGDyVLVH~ 46 (75)
T 2z1c_A 3 LAVPGKVIEVNG------PVAVVDFG-GVKREVRLDLMP-DTKPGDWVIVHT 46 (75)
T ss_dssp CSCCEEEEEEET------TEEEEEET-TEEEEEECTTST-TCCTTCEEEEET
T ss_pred CCCCEEEEEECC------CEEEEEEC-CEEEEEEEEEEC-CCCCCCEEEEEE
T ss_conf 243469999879------98999909-979999998608-999998999940
No 17
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=33.68 E-value=21 Score=14.76 Aligned_cols=47 Identities=23% Similarity=0.159 Sum_probs=32.0
Q ss_pred CEEEEECCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCCCCEEEEEEEECCCCEE
Q ss_conf 3467516456610457883666767575741104435746377623330368825
Q gi|254780258|r 100 SLAYILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQ 154 (278)
Q Consensus 100 ~~~YIlAp~gl~vGd~I~s~~~~~~i~~Gn~lpL~~IP~Gt~I~NIE~~pG~Ggk 154 (278)
+..|+..-..+++||.|.+++.. .+ ....||+|+++. ||..++.-.+
T Consensus 160 ~l~~i~~~~~v~~GD~VvTSG~~-gi------fP~Gi~VG~V~~-v~~~~~~~~~ 206 (255)
T 2j5u_A 160 ELKQLPYDMKFKKGQKVVTSGLG-GK------FPAGIFIGTIEK-VETDKMGLSQ 206 (255)
T ss_dssp EEEEEETTSCCCTTCEEEECCTT-SS------SCTTCEEEEEEE-EEECTTSSEE
T ss_pred CHHHHCCCCCCCCCCEEEECCCC-CC------CCCCCEEEEEEE-EEECCCCCEE
T ss_conf 11010013444579999993898-74------899988899999-8507987368
No 18
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural genomics, NPPSFA; 2.05A {Aquifex aeolicus VF5} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=29.69 E-value=24 Score=14.33 Aligned_cols=25 Identities=32% Similarity=0.569 Sum_probs=15.2
Q ss_pred CCEEEEEEEECCCCEEEEEEEECCCC
Q ss_conf 60478876415885258898414776
Q gi|254780258|r 74 LEGVVKRLEYDPNRTAFIALISYSNG 99 (278)
Q Consensus 74 ~~~~V~~IeYDPnRsa~IALv~~~~g 99 (278)
..+.|-.+.|||++.- |++++-.+|
T Consensus 193 l~alVf~~~~D~y~G~-i~~~RV~sG 217 (600)
T 2ywe_A 193 LKALIFDSYYDPYRGA-VAFVRIFDG 217 (600)
T ss_dssp CEEEEEEEEEETTTEE-EEEEEEEES
T ss_pred CEEEEEEEEECCCCCE-EEEEEEECC
T ss_conf 5799998674599758-999999687
No 19
>1oei_A Major prion protein; octapeptide repeats, structure, protein aggregation, PH-dependent conformation, brain, disease mutation; NMR {Homo sapiens} SCOP: j.90.1.1
Probab=29.13 E-value=23 Score=14.51 Aligned_cols=20 Identities=45% Similarity=1.062 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 4788888888888887887887343
Q gi|254780258|r 230 DHPHGGGEGKTSGGRNPCSPWGKLT 254 (278)
Q Consensus 230 DHPhGGGeGkt~~gr~~~spwG~~~ 254 (278)
..||||+=|.--+ --||+|.
T Consensus 6 gqphgg~wgqphg-----g~wgqp~ 25 (26)
T 1oei_A 6 GQPHGGGWGQPHG-----GGWGQPX 25 (26)
T ss_dssp SSTTSSSSTTTCS-----SSSSCC-
T ss_pred CCCCCCCCCCCCC-----CCCCCCC
T ss_conf 7866886678768-----8667878
No 20
>1wzo_A HPCE; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus HB8}
Probab=24.91 E-value=29 Score=13.78 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=5.5
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 8888888788788
Q gi|254780258|r 238 GKTSGGRNPCSPW 250 (278)
Q Consensus 238 Gkt~~gr~~~spw 250 (278)
+|..-+-.|+.||
T Consensus 145 ~K~~d~f~p~Gp~ 157 (246)
T 1wzo_A 145 AKGRDTFLPLGPF 157 (246)
T ss_dssp HHCSTTCEEEEEE
T ss_pred CCCCCCCCCCCCC
T ss_conf 3388974566997
No 21
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domain (FHA) domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=24.47 E-value=30 Score=13.73 Aligned_cols=58 Identities=12% Similarity=0.249 Sum_probs=38.8
Q ss_pred EECCCCEEEEEEEECCC---CCEEEEE---CCCCCCCCCEEEECCCCCCCCCCCCHHHHHCCCC
Q ss_conf 41588525889841477---6346751---6456610457883666767575741104435746
Q gi|254780258|r 82 EYDPNRTAFIALISYSN---GSLAYIL---APQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVG 139 (278)
Q Consensus 82 eYDPnRsa~IALv~~~~---g~~~YIl---Ap~gl~vGd~I~s~~~~~~i~~Gn~lpL~~IP~G 139 (278)
.-||.=|..=|.|.|.+ +...||. -.+|..+.+..+......+++.|+.+.|+..+.+
T Consensus 85 l~~~~vSr~Ha~i~~~~~~~~~~~~i~Dl~S~nGt~vNg~~i~~~~~~~L~~GD~i~~G~~~~~ 148 (158)
T 3els_A 85 IPEETSSKQHCVIQFRNVRGILKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTLSEFEED 148 (158)
T ss_dssp ECCTTSCSSCEEEEEEEETTEEEEEEEECSCSSCCEETTEECCTTCCEECCTTEEEESSSCGGG
T ss_pred CCCCCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEECCEECCCCCEEECCCCCEEEECCCCCC
T ss_conf 4898835114999998327876599998989980579999988996688799999998975667
No 22
>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962, cytoplasm, hydrolase, manganese, metal-binding, protease, structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii}
Probab=24.24 E-value=30 Score=13.70 Aligned_cols=25 Identities=12% Similarity=0.392 Sum_probs=18.9
Q ss_pred CEEEEEEEECCCCEEEEEEE----ECCCC
Q ss_conf 04788764158852588984----14776
Q gi|254780258|r 75 EGVVKRLEYDPNRTAFIALI----SYSNG 99 (278)
Q Consensus 75 ~~~V~~IeYDPnRsa~IALv----~~~~g 99 (278)
+-.++.++|.|....+|+|| .|+.|
T Consensus 229 ~p~li~l~y~~~~~~~i~LVGKGvtFDtG 257 (482)
T 3ij3_A 229 PPLLIDLKWGDIKAPKVTLVGKGVCFDSG 257 (482)
T ss_dssp CCEEEEEEESCTTSCEEEEEECEEEEECC
T ss_pred CCEEEEEECCCCCCCEEEEECCCEEEECC
T ss_conf 98289971488888717983572597258
No 23
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domain; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=22.44 E-value=19 Score=15.03 Aligned_cols=96 Identities=16% Similarity=0.136 Sum_probs=50.5
Q ss_pred CCCCEEEEEECCCCCCEEEEEE-----EEECCCCCCEEEEEEEECCCCEEEEEEEECCCCCEEE---EECCCCCCCCCEE
Q ss_conf 8984878864787510268798-----8633777604788764158852588984147763467---5164566104578
Q gi|254780258|r 45 NTGRVTMRFRGGGHKNRYRLVD-----FKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAY---ILAPQRLSVGDKV 116 (278)
Q Consensus 45 n~GrITvrhRGGGhKr~yR~ID-----f~r~~~~~~~~V~~IeYDPnRsa~IALv~~~~g~~~Y---IlAp~gl~vGd~I 116 (278)
+.|++.....-|++-..+...| |=|.... .| -||.=|-.=|.|.+......+ .+-.+|..+.+.-
T Consensus 6 ~~~~~~l~~~~~~~~~i~~p~~~~~~~iGR~~~~------~I-~d~~vSR~H~~l~~~~~~~~v~v~~~ssNGT~vNg~~ 78 (143)
T 1yj5_C 6 SRGRLWLQSPTGGPPPIFLPSDGQALVLGRGPLT------QV-TDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGVHE 78 (143)
T ss_dssp CCEEEEEECCTTSCCCEECCTTTCEEEECSBTTT------TB-CCSSSCSSCEEEEEETTTTEEEEEECSSSCCEETTEE
T ss_pred CCCEEEEECCCCCCCCEEECCCCCEEEECCCCCC------CE-ECCCCCCCCEEEEEECCCCEEEEECCCCCCCEECCEE
T ss_conf 7627999787888985586579984886778676------60-1577673145899966876899973886774799999
Q ss_pred EECCCCCCCCCCCCHHHHHCCCCCEEEEEEEECC
Q ss_conf 8366676757574110443574637762333036
Q gi|254780258|r 117 ISSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKPG 150 (278)
Q Consensus 117 ~s~~~~~~i~~Gn~lpL~~IP~Gt~I~NIE~~pG 150 (278)
+.-+...+++.|+.+.|. .|.+.|-+++.+.
T Consensus 79 l~~g~~~~L~~GD~i~lg---~~~~~~~v~~~~~ 109 (143)
T 1yj5_C 79 LKPGLSGSLSLGDVLYLV---NGLYPLTLRWEEL 109 (143)
T ss_dssp CCTTCEEEECTTCEEESS---SSCSEEEEEEEEC
T ss_pred ECCCCEEECCCCCEEEEE---CCCCEEEEEECCC
T ss_conf 634751776899999994---5874167886057
Done!