HHSEARCH alignment of GI: 254780258 and SCOP domain: d1vqoa1

Alignment
>d1vqoa1 b.34.5.3 (A:91-237) C-terminal domain of ribosomal protein L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=100.00  E-value=0  Score=375.50  Aligned_cols=136  Identities=39%  Similarity=0.661  Sum_probs=124.3

Q ss_pred             CCCHHHHHCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCCC
Q ss_conf             74110443574637762333036882588634651899675088899994897589985678099985125533230013
Q gi|254780258|r  128 GNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVNHA  207 (278)
Q Consensus       128 Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsAGt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~~~~~~~g  207 (278)
                      ||+|||.+||+||+|||||+.||+||||||||||||+|+++|++|++|||||||+|+|+++|+||||+|||.+|.+++++
T Consensus         1 Gn~lpL~~IP~Gt~IhNIE~~pg~ggkl~RsAGt~A~ii~k~~~~~~vkLPSGe~r~i~~~c~ATIG~vsn~~~~~~~~~   80 (147)
T d1vqoa1           1 GNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHDRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFV   80 (147)
T ss_dssp             TCEEEGGGSCTTCEEESBCSSTTSCCCBSCSTTCCEEEEECCSSCEEEECTTSCEEEECTTCEEEESCBSSTTGGGSCCC
T ss_pred             CCCCCHHHCCCCCEEEEEEECCCCCCEEEEECCCEEEEEEECCCEEEEEECCCCEEEECHHCCEEEEECCCCCCHHHHHH
T ss_conf             97436503889987898885489872288704754999871265589992588659977013165645037640221443


Q ss_pred             CCCCCCC----CCC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCC---CCCCEECCCCCCCCCC
Q ss_conf             1344100----577-997012332687478888888888888788---7887343772548888
Q gi|254780258|r  208 KAGRARW----LGM-RSHVRGVAMNPVDHPHGGGEGKTSGGRNPC---SPWGKLTKGKRTRSNK  263 (278)
Q Consensus       208 KAG~~Rw----lg~-RP~VRGvAMNpvDHPhGGGeGkt~~gr~~~---spwG~~~kg~kTr~~k  263 (278)
                      |||+++|    ++. +|+||||||||||||||||||++.+...++   +|||+.+....+|+..
T Consensus        81 KAG~~~~~~r~~~~r~P~VRGvaMNpvDHPhGGG~~~~~~~p~~~~~~~~~g~k~~~i~~rrtg  144 (147)
T d1vqoa1          81 KAGNKHHKMKARGTKWPNVRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVGDIASKRTG  144 (147)
T ss_dssp             SHHHHHHHHTTSSCCCSCCCGGGSCGGGCTTCCSSSCCCSSCSEECTTCCTTTCCSEETCSCCS
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEECCCC
T ss_conf             1305655333037869934325548776998999998898998888989898761666312379


SCOP domain information

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: C-terminal domain of ribosomal protein L2
domain: C-terminal domain of ribosomal protein L2
species: Archaeon Haloarcula marismortui [TaxId: 2238]