HHSEARCH alignment of GI: 254780258 and SCOP domain: d1vqoa2

Alignment

Probab=99.89  E-value=9e-25  Score=180.05  Aligned_cols=81  Identities=33%  Similarity=0.512  Sum_probs=75.1

Q ss_pred             CCCEEEEEECCCCCCEEEEEEEEECCC-CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCC
Q ss_conf             984878864787510268798863377-7604788764158852588984147763467516456610457883666767
Q gi|254780258|r   46 TGRVTMRFRGGGHKNRYRLVDFKRGEY-GLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVD  124 (278)
Q Consensus        46 ~GrITvrhRGGGhKr~yR~IDf~r~~~-~~~~~V~~IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~  124 (278)
                      .||+|++||++|||++++.+||+++.. .++|+|++|||||||||+||||.|+||+++||||||||++||.|+++.++ +
T Consensus         9 rGrgt~~~R~~ghk~~~~~~~~~~~~~~~i~g~V~~IeyDP~Rsa~iAlv~~~dg~~~yilApegl~vG~~I~~G~~a-~   87 (90)
T d1vqoa2           9 RGRGTSTFRAPSHRYKADLEHRKVEDGDVIAGTVVDIEHDPARSAPVAAVEFEDGDRRLILAPEGVGVGDELQVGVSA-E   87 (90)
T ss_dssp             HHTCCGGGSCCGGGCCCCCCCCCCCSSCCCEEEEEEEEEETTTTEEEEEEEETTSCEEEECCBTTCBTTCEEEBSTTC-C
T ss_pred             CCCCCCEEECCCCCCCCEECCCCCCCCCCCCEEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCCCCEEEECCCC-C
T ss_conf             899978768999675634013663436763489999896499872678999469989999781898789999779998-7


Q ss_pred             CCC
Q ss_conf             575
Q gi|254780258|r  125 VKP  127 (278)
Q Consensus       125 i~~  127 (278)
                      |+|
T Consensus        88 ikP   90 (90)
T d1vqoa2          88 IAP   90 (90)
T ss_dssp             SST
T ss_pred             CCC
T ss_conf             496

SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: N-terminal domain of ribosomal protein L2
species: Archaeon Haloarcula marismortui [TaxId: 2238]