HHSEARCH alignment of GI: 254780258 and SCOP domain: d2j01d1

Alignment
>d2j01d1 b.34.5.3 (D:127-273) C-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=450.73  Aligned_cols=146  Identities=57%  Similarity=1.023  Sum_probs=143.2

Q ss_pred             CCCCHHHHHCCCCCEEEEEEEECCCCEEEEEECCCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCC
Q ss_conf             57411044357463776233303688258863465189967508889999489758998567809998512553323001
Q gi|254780258|r  127 PGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVNH  206 (278)
Q Consensus       127 ~Gn~lpL~~IP~Gt~I~NIE~~pG~Ggkl~RsAGt~a~Ii~k~~~~~~ikLPSGe~r~i~~~c~AtIG~vsN~~~~~~~~  206 (278)
                      +||+|||.+||+||+|||||+.||+|||||||||+||+|+++|+++++|||||||+++|+++|+||||+|||.+|.++++
T Consensus         1 iGN~lPL~~IP~Gt~I~NIE~~PG~Ggkl~RsAGt~A~Ii~k~~~~~~vkLPSGe~r~i~~~c~AtiG~vsn~~~~~~~~   80 (147)
T d2j01d1           1 VGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGREGDYVILRLPSGELRKVHGECYATVGAVGNADHKNIVL   80 (147)
T ss_dssp             TTCEEEGGGSCTTCEEESEESSTTSCEEESCSSSCCEEECCCBTTEEEEECTTSCEEEEETTSEEEESCCSCGGGGGCCC
T ss_pred             CCCCCCHHHCCCCCEEEEEEECCCCCCEEEEECCCEEEEEEECCCEEEEEECCCCEEEECCCCEEEEEEECCHHHHHHHH
T ss_conf             96520372588998789887448998428872263478998638869999557745994066528986743524533222


Q ss_pred             CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCC-CCCCCEEEEEE
Q ss_conf             3134410057799701233268747888888888888878878873437725488-88886149962
Q gi|254780258|r  207 AKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGKTSGGRNPCSPWGKLTKGKRTRS-NKSTDVFIARS  272 (278)
Q Consensus       207 gKAG~~Rwlg~RP~VRGvAMNpvDHPhGGGeGkt~~gr~~~spwG~~~kg~kTr~-~k~~~~~i~~~  272 (278)
                      +|||++||||+||+||||||||||||||||||++++|++|+||||++|||++||+ +|++|+|||+|
T Consensus        81 gKAG~~r~~g~rP~VRGvaMNpvdHPhGGG~g~~~~g~~~~spwG~~~kg~ktRk~~k~~~~~i~~r  147 (147)
T d2j01d1          81 GKAGRSRWLGRRPHVRGAAMNPVDHPHGGGEGRAPRGRPPASPWGWQTKGLKTRKRRKPSSRFIIAR  147 (147)
T ss_dssp             CSHHHHTTTTBCCCCCSSSSCTTTCSSCCSSSSCCCSSSCBCTTCCBCSSCCCSCTTSSCCSSEEC-
T ss_pred             HHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf             1467777566765343263247508899988886999799798763178866888988778768859


SCOP domain information

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: C-terminal domain of ribosomal protein L2
domain: C-terminal domain of ribosomal protein L2
species: Thermus thermophilus [TaxId: 274]