HHSEARCH alignment of GI: 254780258 and SCOP domain: d2j01d2

Alignment
>d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=347.86  Aligned_cols=124  Identities=47%  Similarity=0.834  Sum_probs=120.0

Q ss_pred             CCEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEE-CCCCCCEEEEE
Q ss_conf             75011588841051087045764168872221115543677588984878864787510268798863-37776047887
Q gi|254780258|r    2 ALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKNRYRLVDFKR-GEYGLEGVVKR   80 (278)
Q Consensus         2 ~~k~~kP~Tp~~R~~~~~~~~~l~k~~p~K~L~~~~~~~~GRNn~GrITvrhRGGGhKr~yR~IDf~r-~~~~~~~~V~~   80 (278)
                      |||+|||+|||+||++++++++||+++|+|+|+.++++++||||+|+||+|||||||||+||+|||+| ++.+++++|++
T Consensus         1 Aik~~kP~Tpg~R~~~~~~~~~l~k~~P~K~L~~~~~~~~GRNn~GrIT~RhrGGGhKr~yR~IDfkR~~k~~i~~~V~~   80 (125)
T d2j01d2           1 AVKKFKPYTPSRRFMTVADFSEITKTEPEKSLVKPLKKTGGRNNQGRITVRFRGGGHKRLYRIIDFKRWDKVGIPAKVAA   80 (125)
T ss_dssp             CCBCCCCSSTTTTTCCBCCCTTSTTCCSCCSSSSCBCCCCCSBSSSSBSSTTBCCCCCCCBCCCCCCCGGGTTCCEEEEE
T ss_pred             CCCCCCCCCCCCCCEEECCCCCCCCCCCEEHHCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCEEEEE
T ss_conf             96211797984786685247862969821000422555587389872878540697047789999871357896659999


Q ss_pred             EEECCCCEEEEEEEECCCCCEEEEECCCCCCCCCEEEECCCCCCCC
Q ss_conf             6415885258898414776346751645661045788366676757
Q gi|254780258|r   81 LEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVDVK  126 (278)
Q Consensus        81 IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~vGd~I~s~~~~~~i~  126 (278)
                      |||||||||+||||+|.||+++|||||+||++||.|+|+.++ ||+
T Consensus        81 IeYDPnRsa~IALv~y~dg~k~YIlap~glkvGd~i~sg~~a-~Ik  125 (125)
T d2j01d2          81 IEYDPNRSARIALLHYVDGEKRYIIAPDGLQVGQQVVAGPDA-PIQ  125 (125)
T ss_dssp             CCCCTTCSSCEEEEEETTSCEEEEECCTTCCTTCEECBSSSS-CSS
T ss_pred             EEECCCCCEEEEEEEECCCCEEEEECCCCCCCCCEEEECCCC-CCC
T ss_conf             996589862799999279959999825998899999879898-889


SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: N-terminal domain of ribosomal protein L2
species: Thermus thermophilus [TaxId: 274]