HHSEARCH alignment of GI: 254780258 and SCOP domain: d2zjra2

Alignment

Probab=100.00  E-value=1.5e-37  Score=264.03  Aligned_cols=94  Identities=52%  Similarity=0.865  Sum_probs=89.1

Q ss_pred             CCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEEEEC-CCCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEECCCCCC
Q ss_conf             11155436775889848788647875102687988633-77760478876415885258898414776346751645661
Q gi|254780258|r   33 LTRGLCSKGGRNNTGRVTMRFRGGGHKNRYRLVDFKRG-EYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLS  111 (278)
Q Consensus        33 L~~~~~~~~GRNn~GrITvrhRGGGhKr~yR~IDf~r~-~~~~~~~V~~IeYDPnRsa~IALv~~~~g~~~YIlAp~gl~  111 (278)
                      ||.++++++||||+||||+|||||||||+||+|||+|. +.+++++|++|||||||||+||||.|+||+++|||||++|+
T Consensus         1 Lt~~~~~~~GRNn~GrIT~rhrGGGhKr~yR~IDf~R~~~~~~~~~V~~IeYDPnRSa~IALv~y~dG~k~YILap~glk   80 (95)
T d2zjra2           1 LTEALPKTGGRNNRGRITSRFIGGGHKRLYRIIDFKRRDKSGVNAKVAAIEYDPNRSARIALLHYADGEKRYILAPEGLT   80 (95)
T ss_dssp             CCSCCBCCCCCBCSSSBCSCSCCCCCCCBCCCBCCSCCTTTTCEEEEEEEECCTTTSSCEEEEEETTSCEEEEECBTTCC
T ss_pred             CCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEHHHCCCCCCEEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCC
T ss_conf             98357777771899878788777965578987443132168997799999974888778999993799499998359998


Q ss_pred             CCCEEEECCCCCCCCC
Q ss_conf             0457883666767575
Q gi|254780258|r  112 VGDKVISSDSAVDVKP  127 (278)
Q Consensus       112 vGd~I~s~~~~~~i~~  127 (278)
                      +||.|.|+.++ +|++
T Consensus        81 vGd~I~sg~~a-~iki   95 (95)
T d2zjra2          81 VGATVNAGPEA-EPKL   95 (95)
T ss_dssp             TTCEEEBSSSS-CSCT
T ss_pred             CCCEEEECCCC-CCCC
T ss_conf             99999879997-8669

SCOP domain information

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: N-terminal domain of ribosomal protein L2
species: Deinococcus radiodurans [TaxId: 1299]