PSIBLAST alignment of GI: 254780258 and protein with PDB id: 1nkw
gi|28948920|pdb|1NKW|A Chain A, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 275
>gi|51247373|pdb|1SM1|A Chain A, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Quinupristin And Dalfopristin Length = 275
Score = 311 bits (798), Expect = 5e-83, Method: Composition-based stats.
Identities = 144/276 (52%), Positives = 189/276 (68%), Gaps = 3/276 (1%)
Query: 1 MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKN 60
MA+K + P T RRQ+ D + L +P K+LT L GGRNN GR+T RF GGGHK
Sbjct: 1 MAVKKYRPYTPSRRQMTTADFSGLTKKRPEKALTEALPKTGGRNNRGRITSRFIGGGHKR 60
Query: 61 RYRLVDFKR-GEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISS 119
YR++DFKR + G+ V +EYDPNR+A IAL+ Y++G YILAP+ L+VG V +
Sbjct: 61 LYRIIDFKRRDKSGVNAKVAAIEYDPNRSARIALLHYADGEKRYILAPEGLTVGATVNAG 120
Query: 120 DSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSS 179
A K GNA+PLRF+PVG++VH +E+ PGKG Q++RSAG+ ++ ++ ++RL S
Sbjct: 121 PEAEP-KLGNALPLRFVPVGAVVHALELVPGKGAQLARSAGTSVQVQGKESDYVIVRLPS 179
Query: 180 GEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGK 239
GE+R VHS C A+IGAV N +H N+ KAGR+RWLG + H RG AMNPVDHPHGGGEG+
Sbjct: 180 GELRRVHSECYATIGAVGNAEHKNIVLGKAGRSRWLGRKPHQRGSAMNPVDHPHGGGEGR 239
Query: 240 TSGGRNPCSPWGKLTKGKRTRSN-KSTDVFIARSRH 274
T GR P +PWGK TKG +TR K++D FI R
Sbjct: 240 TGAGRVPVTPWGKPTKGLKTRRKRKTSDRFIVTRRK 275