PSIBLAST alignment of GI: 254780258 and protein with PDB id: 1pnu
>gi|34811554|pdb|1PNU|A Chain A, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 270
>gi|34811607|pdb|1PNY|A Chain A, Crystal Structure Of The Wild Type Ribosome From E. Coli, 50s Subunit Of 70s Ribosome. This File, 1pny, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit Is In The Pdb File 1pnx. Length = 270
Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats.
Identities = 141/271 (52%), Positives = 185/271 (68%), Gaps = 3/271 (1%)
Query: 4 KNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKNRYR 63
K + P T RRQ+ D + L +P K+LT L GGRNN GR+T RF GGGHK YR
Sbjct: 1 KKYRPYTPSRRQMTTADFSGLTKKRPEKALTEALPKTGGRNNRGRITSRFIGGGHKRLYR 60
Query: 64 LVDFKR-GEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSA 122
++DFKR + G+ V +EYDPNR+A IAL+ Y++G YILAP+ L+VG V + A
Sbjct: 61 IIDFKRRDKSGVNAKVAAIEYDPNRSARIALLHYADGEKRYILAPEGLTVGATVNAGPEA 120
Query: 123 VDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEM 182
K GNA+PLRF+PVG++VH +E+ PGKG Q++RSAG+ ++ ++ ++RL SGE+
Sbjct: 121 EP-KLGNALPLRFVPVGAVVHALELVPGKGAQLARSAGTSVQVQGKESDYVIVRLPSGEL 179
Query: 183 RFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGKTSG 242
R VHS C A+IGAV N +H N+ KAGR+RWLG + H RG AMNPVDHPHGGGEG+T
Sbjct: 180 RRVHSECYATIGAVGNAEHKNIVLGKAGRSRWLGRKPHQRGSAMNPVDHPHGGGEGRTGA 239
Query: 243 GRNPCSPWGKLTKGKRTRSN-KSTDVFIARS 272
GR P +PWGK TKG +TR K++D FI
Sbjct: 240 GRVPVTPWGKPTKGLKTRRKRKTSDRFIVTR 270