PSIBLAST alignment of GI: 254780258 and protein with PDB id: 2j01

gi|116668235|pdb|2J01|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 276
>gi|116668296|pdb|2J03|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4). This File Contains The 50s Subunit From Molecule Ii. Length = 276

 Score =  348 bits (893), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 143/277 (51%), Positives = 188/277 (67%), Gaps = 3/277 (1%)

Query: 1   MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKN 60
           MA+K F P T  RR + + D + +   +P KSL + L   GGRNN GR+T+RFRGGGHK 
Sbjct: 1   MAVKKFKPYTPSRRFMTVADFSEITKTEPEKSLVKPLKKTGGRNNQGRITVRFRGGGHKR 60

Query: 61  RYRLVDFKRGEYG-LEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISS 119
            YR++DFKR +   +   V  +EYDPNR+A IAL+ Y +G   YI+AP  L VG +V++ 
Sbjct: 61  LYRIIDFKRWDKVGIPAKVAAIEYDPNRSARIALLHYVDGEKRYIIAPDGLQVGQQVVAG 120

Query: 120 DSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSS 179
             A  ++ GNA+PLRFIPVG++VH VE++P KG +++R+AG+ A++  R+    +LRL S
Sbjct: 121 PDA-PIQVGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGREGDYVILRLPS 179

Query: 180 GEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGK 239
           GE+R VH  C A++GAV N DH N+   KAGR+RWLG R HVRG AMNPVDHPHGGGEG+
Sbjct: 180 GELRKVHGECYATVGAVGNADHKNIVLGKAGRSRWLGRRPHVRGAAMNPVDHPHGGGEGR 239

Query: 240 TSGGRNPCSPWGKLTKGKRTRS-NKSTDVFIARSRHK 275
              GR P SPWG  TKG +TR   K +  FI   R K
Sbjct: 240 APRGRPPASPWGWQTKGLKTRKRRKPSSRFIIARRKK 276