RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780258|ref|YP_003064671.1| 50S ribosomal protein L2 [Candidatus Liberibacter asiaticus str. psy62] (278 letters) >gnl|CDD|181807 PRK09374, rplB, 50S ribosomal protein L2; Validated. Length = 276 Score = 480 bits (1239), Expect = e-136 Identities = 166/277 (59%), Positives = 211/277 (76%), Gaps = 2/277 (0%) Query: 1 MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKN 60 MA+K + P T GRR +V+VD + L GKP KSL L GGRNN GR+T+R RGGGHK Sbjct: 1 MAIKKYKPTTPGRRGMVVVDFSELTKGKPEKSLLEPLKKSGGRNNNGRITVRHRGGGHKR 60 Query: 61 RYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSD 120 +YR++DFKR + G+ V+R+EYDPNR+A IAL+ Y++G YILAP+ L VGD V+S Sbjct: 61 KYRIIDFKRNKDGIPAKVERIEYDPNRSARIALLHYADGEKRYILAPKGLKVGDTVVSGP 120 Query: 121 SAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSG 180 A D+KPGNA+PLR IPVG+ VHN+E+KPGKGGQ++RSAG+ A+LV ++ A LRL SG Sbjct: 121 DA-DIKPGNALPLRNIPVGTTVHNIELKPGKGGQLARSAGTSAQLVAKEGKYATLRLPSG 179 Query: 181 EMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGKT 240 E+R V + C A+IG V N++HSN++ KAGR+RWLG+R VRGVAMNPVDHPHGGGEG+T Sbjct: 180 EVRKVLAECRATIGEVGNEEHSNISLGKAGRSRWLGIRPTVRGVAMNPVDHPHGGGEGRT 239 Query: 241 SGGRNPCSPWGKLTKGKRTRS-NKSTDVFIARSRHKN 276 SGGR+P +PWGK TKG +TR NK +D FI R R K Sbjct: 240 SGGRHPVTPWGKPTKGYKTRKKNKRSDKFIVRRRKKK 276 >gnl|CDD|162234 TIGR01171, rplB_bact, ribosomal protein L2, bacterial/organellar. This model distinguishes bacterial and organellar ribosomal protein L2 from its counterparts in the archaea nad in the eukaryotic cytosol. Plant mitochondrial examples tend to have long, variable inserts. Length = 273 Score = 392 bits (1008), Expect = e-110 Identities = 157/274 (57%), Positives = 197/274 (71%), Gaps = 2/274 (0%) Query: 3 LKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKNRY 62 +K + P T GRR V+ D + + GKP KSL L GGRNN GR+T R RGGGHK Y Sbjct: 1 IKKYKPTTPGRRGAVVSDFDEITKGKPEKSLLEKLHKTGGRNNRGRITSRHRGGGHKRLY 60 Query: 63 RLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSA 122 R++DFKR + G+ V +EYDPNR+A IAL+ Y++G YILAP+ L VGD VIS A Sbjct: 61 RIIDFKRNKDGIPAKVAAIEYDPNRSARIALLHYADGEKRYILAPKGLKVGDTVISGPEA 120 Query: 123 VDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEM 182 +KPGNA+PLR IPVG+ VHN+E+KPGKGGQ++RSAG+ A+++ ++ LRL SGEM Sbjct: 121 -PIKPGNALPLRNIPVGTTVHNIELKPGKGGQLARSAGTSAQILAKEGGYVTLRLPSGEM 179 Query: 183 RFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGKTSG 242 R V C A+IG V N+DH+N+ KAGR+RWLG+R VRGVAMNPVDHPHGGGEG+T G Sbjct: 180 RMVLKECRATIGEVGNEDHNNIVLGKAGRSRWLGIRPTVRGVAMNPVDHPHGGGEGRTPG 239 Query: 243 GRNPCSPWGKLTKGKRTRSNK-STDVFIARSRHK 275 GR+P +PWGK TKG +TR K +D FI R R K Sbjct: 240 GRHPVTPWGKPTKGYKTRKKKKYSDKFIVRRRKK 273 >gnl|CDD|173329 PTZ00031, PTZ00031, ribosomal protein L2; Provisional. Length = 317 Score = 266 bits (682), Expect = 4e-72 Identities = 128/254 (50%), Positives = 159/254 (62%), Gaps = 1/254 (0%) Query: 24 LHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKNRYRLVDFKRGEYGLEGVVKRLEY 83 L+ G+ +K L+ GRNN GR+T R RGGGH R R +DFKR + V R+EY Sbjct: 55 LYKGRVVKQLSCRRVKNSGRNNVGRITTRHRGGGHVQRLRFIDFKRSRKDIYSTVLRIEY 114 Query: 84 DPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGSIVH 143 DP+R+A IAL+ Y +G L+YILAP L GDK+I+S A ++ PGN++PLR IPVGSIVH Sbjct: 115 DPSRSAHIALLQYEDGVLSYILAPLLLRPGDKIIASKYA-NINPGNSLPLRNIPVGSIVH 173 Query: 144 NVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSN 203 NVEM+PG GGQI R+ G+YA +V +D A L+L S E+R C A+IG VSN +H Sbjct: 174 NVEMRPGAGGQIIRAGGTYATVVSKDEQFATLKLKSTEIRKFPLDCWATIGQVSNLEHHM 233 Query: 204 VNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGKTSGGRNPCSPWGKLTKGKRTRSNK 263 KAG RWLG R VRGVAMNP HPHGGG K R CS WG G +TRS K Sbjct: 234 RILGKAGVNRWLGKRPVVRGVAMNPSKHPHGGGTSKKGTKRPKCSLWGICRDGYKTRSKK 293 Query: 264 STDVFIARSRHKNK 277 I R + + Sbjct: 294 KPLGLIIRRKICGR 307 >gnl|CDD|181989 PRK09612, rpl2p, 50S ribosomal protein L2P; Validated. Length = 238 Score = 154 bits (391), Expect = 3e-38 Identities = 76/202 (37%), Positives = 114/202 (56%), Gaps = 15/202 (7%) Query: 45 NTGRVTMRFRGGGHKN----RYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGS 100 GR T FR H+ +Y +D L G V + +DP R A +A + + NG Sbjct: 9 RRGRGTPTFRSPSHRYKGPVKYPPLDKDGT---LRGKVVDILHDPGRNAPVAKVKFENGE 65 Query: 101 LAYILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAG 160 ILAP+ L VG ++ SA ++KPGN +PL IP G+ V N+E +PG GG+ +RS+G Sbjct: 66 EFLILAPEGLYVGQEIEIGPSA-EIKPGNTLPLGEIPEGTPVCNIESRPGDGGKFARSSG 124 Query: 161 SYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSH 220 +YA +V + + +++L SG+++ ++ C A+IG V+ KAG ++ M++ Sbjct: 125 TYALVVGHEGDKVIVQLPSGKIKELNPRCRATIGVVAGGGRKEKPFLKAG-KKYHKMKAK 183 Query: 221 ------VRGVAMNPVDHPHGGG 236 VRGVAMN VDHPHGGG Sbjct: 184 AKKWPRVRGVAMNAVDHPHGGG 205 >gnl|CDD|173464 PTZ00180, PTZ00180, 60S ribosomal protein L8; Provisional. Length = 260 Score = 97.5 bits (243), Expect = 3e-21 Identities = 74/203 (36%), Positives = 109/203 (53%), Gaps = 23/203 (11%) Query: 53 FRGGGHKN----RYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAY----- 103 F+ GHK + R++D+ + GVVK +E+DP R A +A + + + Y Sbjct: 16 FKAHGHKRLGPAKLRILDYAERHGYIRGVVKDIEHDPGRGAPLARVEFRD---PYKYKRV 72 Query: 104 ---ILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAG 160 ++AP+ + G V A + GN +PL IP G+IV NVE KPG G ++R++G Sbjct: 73 KELMVAPEGMYTGQYVYCGAKA-PLAIGNVLPLGQIPEGTIVCNVEEKPGDRGTLARASG 131 Query: 161 SYARLV--ERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRA--RWLG 216 YA ++ D + +RL SG+ + V S A IG V+ + KAG A ++ G Sbjct: 132 CYATIIGHSDDGGKTRIRLPSGQKKTVSSLSRAMIGIVAGGGRIDKPVLKAGNAFHKYRG 191 Query: 217 MRS---HVRGVAMNPVDHPHGGG 236 R+ VRGVAMNPV+HPHGGG Sbjct: 192 KRNCWPKVRGVAMNPVEHPHGGG 214 >gnl|CDD|178288 PLN02685, PLN02685, iron superoxide dismutase. Length = 299 Score = 30.0 bits (67), Expect = 0.69 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 8/42 (19%) Query: 147 MKPGKGGQ--------ISRSAGSYARLVERDRSRALLRLSSG 180 MKPG GG+ I R GS+ R VE +S A + SG Sbjct: 130 MKPGGGGKPSGELLQLIERDFGSFERFVEEFKSAAATQFGSG 171 >gnl|CDD|178017 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase. Length = 503 Score = 29.3 bits (66), Expect = 1.0 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 10/52 (19%) Query: 130 AMPLRFIPVGSIVHNVEMKP----------GKGGQISRSAGSYARLVERDRS 171 A+P+ I +G +V N E+ P KGGQ S ++ +V + RS Sbjct: 451 ALPILGIVLGRLVQNFELLPPPGQSKIDVSEKGGQFSLHIAKHSTVVFKPRS 502 >gnl|CDD|177875 PLN02230, PLN02230, phosphoinositide phospholipase C 4. Length = 598 Score = 27.4 bits (60), Expect = 4.6 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 7/86 (8%) Query: 137 PVGSIVHNVEMKPGKGGQIS-------RSAGSYARLVERDRSRALLRLSSGEMRFVHSSC 189 P G + +++ P K ++S ++ SY V R + LR+ RF S+ Sbjct: 344 PKGGLRMALKVDPNKIRRLSLSEQLLEKAVASYGADVIRFTQKNFLRIYPKGTRFNSSNY 403 Query: 190 MASIGAVSNQDHSNVNHAKAGRARWL 215 IG +S N GRA WL Sbjct: 404 KPQIGWMSGAQMIAFNMQGYGRALWL 429 >gnl|CDD|173153 PRK14690, PRK14690, molybdopterin biosynthesis protein MoeA; Provisional. Length = 419 Score = 27.2 bits (60), Expect = 5.5 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%) Query: 120 DSAVDVKPGNAMPLRFIPVGS 140 D A + PG+ P+RFIP GS Sbjct: 398 DGARRIAPGD--PVRFIPYGS 416 >gnl|CDD|177868 PLN02222, PLN02222, phosphoinositide phospholipase C 2. Length = 581 Score = 26.9 bits (59), Expect = 5.8 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 8/94 (8%) Query: 137 PVGSIVHNVEMKPGK-------GGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSC 189 P G I +++ P K Q+ ++A YA+ + R LLR+ R S+ Sbjct: 327 PKGGITECLKVDPDKVRRLSLSEEQLEKAAEKYAKQIVRFTQHNLLRIYPKGTRVTSSNY 386 Query: 190 MASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRG 223 +G N GR+ WL M+ R Sbjct: 387 NPLVGWSHGAQMVAFNMQGYGRSLWL-MQGMFRA 419 >gnl|CDD|161677 TIGR00042, TIGR00042, non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family. Saccharomyces cerevisiae HAM1 protects against the mutagenic effects of the base analog 6-N-hydroxylaminopurine, which can be a natural product of monooxygenase activity on adenine. Methanococcus jannaschii MJ0226 and E. coli RdgB are also characterized as pyrophosphatases active against non-standard purines NTPs. E. coli RdgB appears to act by intercepting non-canonical deoxyribonucleotide triphosphates from replication precursor pools. Length = 184 Score = 26.6 bits (59), Expect = 7.8 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%) Query: 73 GLEGVVKRLEYDPNRTA-FIALISYS 97 LE ++K LE NR A F+ +I Y Sbjct: 91 NLEKILKLLEGVENRQAYFVCVIGYC 116 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.317 0.134 0.396 Gapped Lambda K H 0.267 0.0730 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,491,659 Number of extensions: 280873 Number of successful extensions: 456 Number of sequences better than 10.0: 1 Number of HSP's gapped: 447 Number of HSP's successfully gapped: 15 Length of query: 278 Length of database: 5,994,473 Length adjustment: 92 Effective length of query: 186 Effective length of database: 4,006,537 Effective search space: 745215882 Effective search space used: 745215882 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (25.3 bits)