RPSBLAST alignment of GI: 254780258 and protein with PDBid: 2j01
>2j01_D 50S ribosomal protein L2; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 3d5b_D 3d5d_D 3f1f_D 3f1h_D ... Length = 276
Score = 266 bits (680), Expect = 5e-72
Identities = 144/277 (51%), Positives = 189/277 (68%), Gaps = 3/277 (1%)
Query: 1 MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKN 60
MA+K F P T RR + + D + + +P KSL + L GGRNN GR+T+RFRGGGHK
Sbjct: 1 MAVKKFKPYTPSRRFMTVADFSEITKTEPEKSLVKPLKKTGGRNNQGRITVRFRGGGHKR 60
Query: 61 RYRLVDFKRGEY-GLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISS 119
YR++DFKR + G+ V +EYDPNR+A IAL+ Y +G YI+AP L VG +V++
Sbjct: 61 LYRIIDFKRWDKVGIPAKVAAIEYDPNRSARIALLHYVDGEKRYIIAPDGLQVGQQVVAG 120
Query: 120 DSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSS 179
A ++ GNA+PLRFIPVG++VH VE++P KG +++R+AG+ A++ R+ +LRL S
Sbjct: 121 PDA-PIQVGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGREGDYVILRLPS 179
Query: 180 GEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGK 239
GE+R VH C A++GAV N DH N+ KAGR+RWLG R HVRG AMNPVDHPHGGGEG+
Sbjct: 180 GELRKVHGECYATVGAVGNADHKNIVLGKAGRSRWLGRRPHVRGAAMNPVDHPHGGGEGR 239
Query: 240 TSGGRNPCSPWGKLTKGKRTRSN-KSTDVFIARSRHK 275
GR P SPWG TKG +TR K + FI R K
Sbjct: 240 APRGRPPASPWGWQTKGLKTRKRRKPSSRFIIARRKK 276