RPSBLAST alignment of GI: 254780258 and protein with PDBid: 2j01

>2j01_D 50S ribosomal protein L2; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 3d5b_D 3d5d_D 3f1f_D 3f1h_D ... Length = 276
 Score =  266 bits (680), Expect = 5e-72
 Identities = 144/277 (51%), Positives = 189/277 (68%), Gaps = 3/277 (1%)

Query: 1   MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKN 60
           MA+K F P T  RR + + D + +   +P KSL + L   GGRNN GR+T+RFRGGGHK 
Sbjct: 1   MAVKKFKPYTPSRRFMTVADFSEITKTEPEKSLVKPLKKTGGRNNQGRITVRFRGGGHKR 60

Query: 61  RYRLVDFKRGEY-GLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISS 119
            YR++DFKR +  G+   V  +EYDPNR+A IAL+ Y +G   YI+AP  L VG +V++ 
Sbjct: 61  LYRIIDFKRWDKVGIPAKVAAIEYDPNRSARIALLHYVDGEKRYIIAPDGLQVGQQVVAG 120

Query: 120 DSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSS 179
             A  ++ GNA+PLRFIPVG++VH VE++P KG +++R+AG+ A++  R+    +LRL S
Sbjct: 121 PDA-PIQVGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGREGDYVILRLPS 179

Query: 180 GEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGK 239
           GE+R VH  C A++GAV N DH N+   KAGR+RWLG R HVRG AMNPVDHPHGGGEG+
Sbjct: 180 GELRKVHGECYATVGAVGNADHKNIVLGKAGRSRWLGRRPHVRGAAMNPVDHPHGGGEGR 239

Query: 240 TSGGRNPCSPWGKLTKGKRTRSN-KSTDVFIARSRHK 275
              GR P SPWG  TKG +TR   K +  FI   R K
Sbjct: 240 APRGRPPASPWGWQTKGLKTRKRRKPSSRFIIARRKK 276