RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780258|ref|YP_003064671.1| 50S ribosomal protein L2 [Candidatus Liberibacter asiaticus str. psy62] (278 letters) >3ofq_C 50S ribosomal protein L2; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_C 2wwq_C 3ofr_C* 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C 3df2_C 3df4_C 1vt2_C 3i1p_C 3i1r_C 3i1t_C 3i20_C 3i22_C 3kcr_6 ... Length = 271 Score = 312 bits (801), Expect = 5e-86 Identities = 153/272 (56%), Positives = 187/272 (68%), Gaps = 2/272 (0%) Query: 2 ALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKNR 61 A+ P + GRR +V V LH GKP L GGRNN GR+T R GGGHK Sbjct: 1 AVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRNNNGRITTRHIGGGHKQA 60 Query: 62 YRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDS 121 YR+VDFKR + G+ VV+RLEYDPNR+A IAL+ Y +G YILAP+ L GD++ S Sbjct: 61 YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQSGVD 120 Query: 122 AVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGE 181 A +KPGN +P+R IPVGS VHNVEMKPGKGGQ++RSAG+Y ++V RD + LRL SGE Sbjct: 121 A-AIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGE 179 Query: 182 MRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGKTS 241 MR V + C A++G V N +H KAG ARW G+R VRG AMNPVDHPHGGGEG+ + Sbjct: 180 MRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGR-N 238 Query: 242 GGRNPCSPWGKLTKGKRTRSNKSTDVFIARSR 273 G++P +PWG TKGK+TRSNK TD FI R R Sbjct: 239 FGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRR 270 >3i1n_C 50S ribosomal protein L2; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C 3df2_C 3df4_C 1vs6_C 3i1p_C 3i1r_C 3i1t_C 3i20_C 3i22_C 2qam_C* 1p85_A 1p86_A 2i2v_C 2i2t_C* 2qao_C* ... Length = 273 Score = 274 bits (702), Expect = 2e-74 Identities = 155/275 (56%), Positives = 189/275 (68%), Gaps = 2/275 (0%) Query: 1 MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKN 60 MA+ P + GRR +V V LH GKP L GGRNN GR+T R GGGHK Sbjct: 1 MAVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRNNNGRITTRHIGGGHKQ 60 Query: 61 RYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSD 120 YR+VDFKR + G+ VV+RLEYDPNR+A IAL+ Y +G YILAP+ L GD++ S Sbjct: 61 AYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQSGV 120 Query: 121 SAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSG 180 A +KPGN +P+R IPVGS VHNVEMKPGKGGQ++RSAG+Y ++V RD + LRL SG Sbjct: 121 DA-AIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSG 179 Query: 181 EMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGKT 240 EMR V + C A++G V N +H KAG ARW G+R VRG AMNPVDHPHGGGEG+ Sbjct: 180 EMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGR- 238 Query: 241 SGGRNPCSPWGKLTKGKRTRSNKSTDVFIARSRHK 275 + G++P +PWG TKGK+TRSNK TD FI R R K Sbjct: 239 NFGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRSK 273 >2j01_D 50S ribosomal protein L2; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 3d5b_D 3d5d_D 3f1f_D 3f1h_D ... Length = 276 Score = 266 bits (680), Expect = 5e-72 Identities = 144/277 (51%), Positives = 189/277 (68%), Gaps = 3/277 (1%) Query: 1 MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKN 60 MA+K F P T RR + + D + + +P KSL + L GGRNN GR+T+RFRGGGHK Sbjct: 1 MAVKKFKPYTPSRRFMTVADFSEITKTEPEKSLVKPLKKTGGRNNQGRITVRFRGGGHKR 60 Query: 61 RYRLVDFKRGEY-GLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISS 119 YR++DFKR + G+ V +EYDPNR+A IAL+ Y +G YI+AP L VG +V++ Sbjct: 61 LYRIIDFKRWDKVGIPAKVAAIEYDPNRSARIALLHYVDGEKRYIIAPDGLQVGQQVVAG 120 Query: 120 DSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSS 179 A ++ GNA+PLRFIPVG++VH VE++P KG +++R+AG+ A++ R+ +LRL S Sbjct: 121 PDA-PIQVGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGREGDYVILRLPS 179 Query: 180 GEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGK 239 GE+R VH C A++GAV N DH N+ KAGR+RWLG R HVRG AMNPVDHPHGGGEG+ Sbjct: 180 GELRKVHGECYATVGAVGNADHKNIVLGKAGRSRWLGRRPHVRGAAMNPVDHPHGGGEGR 239 Query: 240 TSGGRNPCSPWGKLTKGKRTRSN-KSTDVFIARSRHK 275 GR P SPWG TKG +TR K + FI R K Sbjct: 240 APRGRPPASPWGWQTKGLKTRKRRKPSSRFIIARRKK 276 >3bbo_E Ribosomal protein L2; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 269 Score = 233 bits (596), Expect = 3e-62 Identities = 118/274 (43%), Positives = 165/274 (60%), Gaps = 9/274 (3%) Query: 1 MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKG-GRNNTGRVTMRFRGGGHK 59 MA+ + TS R + + P +L G G GRN G +T R RGGGHK Sbjct: 1 MAIHLYKTSTSSTRNGAVQVK-----SNPRNNLISGQRRCGKGRNARGIITARHRGGGHK 55 Query: 60 NRYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISS 119 YR +DF+R E + G + +EYDPNR A+I LI Y +G YIL P+ +GD ++S Sbjct: 56 RLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSG 115 Query: 120 DSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSS 179 +K GNA+PL +P+G+ +HN+E+ G+GGQ++R+AG+ A+L+ ++ A L+L S Sbjct: 116 TEV-PIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPS 174 Query: 180 GEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGK 239 GE+R + +C A++G V N + +AG RWLG R VRGV MNPVDHPHGGGEG+ Sbjct: 175 GEVRLISKNCSATVGQVGNVGVNQKRLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGR 234 Query: 240 TSGGRN-PCSPWGKLTKGKRTRS-NKSTDVFIAR 271 GR P +PWG G+R+R NK +D FI R Sbjct: 235 APIGRKSPTTPWGYPALGRRSRKRNKYSDNFIIR 268 >1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D Length = 178 Score = 224 bits (572), Expect = 2e-59 Identities = 82/179 (45%), Positives = 122/179 (68%), Gaps = 6/179 (3%) Query: 61 RYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSD 120 +YR++DFKR + G+ G V +EYDPNR+A IALI+Y++G YI+AP+ L VG +++S Sbjct: 1 QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADGEKRYIIAPKNLKVGMEIMSGP 60 Query: 121 SAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSG 180 A D+K GNA+PL IPVG++VHN+E+KPG+GGQ+ R+AG+ A+++ ++ ++RL+SG Sbjct: 61 DA-DIKIGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASG 119 Query: 181 EMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGM-----RSHVRGVAMNPVDHPHG 234 E+R + C A++G V N ++ KAG +VRGVAMN VDHP G Sbjct: 120 EVRMILGKCRATVGEVGNGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFG 178 >2zkr_a 60S ribosomal protein L8; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 1s1i_B Length = 257 Score = 200 bits (511), Expect = 2e-52 Identities = 68/263 (25%), Positives = 119/263 (45%), Gaps = 25/263 (9%) Query: 27 GKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKNRYRLVDFKRGEYGLEGVVKRLEYDPN 86 G+ I+ +G + R ++ R G + R VDF ++G+VK + +DP Sbjct: 2 GRVIRGQRKG------AGSVFRAHVKHRKGAAR--LRAVDFAERHGYIKGIVKDIIHDPG 53 Query: 87 RTAFIALISYSNGS-----LAYILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGSI 141 R A +A + + + +A + + G V A + GN +P+ +P G+I Sbjct: 54 RGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKA-QLNIGNVLPVGTMPEGTI 112 Query: 142 VHNVEMKPGKGGQISRSAGSYARLVERDR--SRALLRLSSGEMRFVHSSCMASIGAVSNQ 199 V +E KPG G+++R++G+YA ++ + + ++L SG + + S+ A +G V+ Sbjct: 113 VCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGG 172 Query: 200 DHSNVNHAKAGRAR-----WLGMRSHVRGVAMNPVDHPHGGGEGKTSGGRNPCS---PWG 251 + KAGRA VRGVAMNPV+HP GGG + G + P G Sbjct: 173 GRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAG 232 Query: 252 KLTKGKRTR-SNKSTDVFIARSR 273 + R + + + + Sbjct: 233 RKVGLIAARRTGRLRGTKTVQEK 255 >1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ... Length = 240 Score = 197 bits (503), Expect = 2e-51 Identities = 80/226 (35%), Positives = 118/226 (52%), Gaps = 10/226 (4%) Query: 47 GRVTMRFRGGGHKNRYRLVDFKR-GEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYIL 105 GR T FR H+ + L K + G V +E+DP R+A +A + + +G IL Sbjct: 11 GRGTSTFRAPSHRYKADLEHRKVEDGDVIAGTVVDIEHDPARSAPVAAVEFEDGDRRLIL 70 Query: 106 APQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARL 165 AP+ + VGD++ SA ++ PGN +PL IP G V NVE PG GG+ +R++G A+L Sbjct: 71 APEGVGVGDELQVGVSA-EIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQL 129 Query: 166 VERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWL-----GMRSH 220 + DR+ A+++L SGEM+ + C A+IG V+ ++ KAG + Sbjct: 130 LTHDRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPN 189 Query: 221 VRGVAMNPVDHPHGGGEGKTSGGRNPCS---PWGKLTKGKRTRSNK 263 VRGVAMN VDHP GGG + G S P G+ ++ Sbjct: 190 VRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVGDIASKRTG 235 >2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} PDB: 3iy9_B Length = 136 Score = 144 bits (365), Expect = 2e-35 Identities = 49/137 (35%), Positives = 82/137 (59%), Gaps = 5/137 (3%) Query: 78 VKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDS----AVDVKPGNAMPL 133 V ++ YDP R+A IAL+ +I+A + + GD +++S+ AV + G+A PL Sbjct: 1 VIQVRYDPCRSADIALV-AGGSRKRWIIATENMQAGDTILNSNHIGRMAVAAREGDAHPL 59 Query: 134 RFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASI 193 +PVG++++NVE +PG+G Q R+AG+ L+ + A+++L S V +C+A++ Sbjct: 60 GALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLETCVATV 119 Query: 194 GAVSNQDHSNVNHAKAG 210 G VSN DH+ KAG Sbjct: 120 GRVSNVDHNKRVIGKAG 136 >1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I Length = 137 Score = 140 bits (355), Expect = 3e-34 Identities = 67/138 (48%), Positives = 104/138 (75%), Gaps = 1/138 (0%) Query: 61 RYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSD 120 +YR++DFKR + G+ G V +EYDPNR+A IALI+Y++G YI+AP+ L VG +++S Sbjct: 1 QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADGEKRYIIAPKNLKVGMEIMSGP 60 Query: 121 SAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSG 180 A D+K GNA+PL IPVG++VHN+E+KPG+GGQ+ R+AG+ A+++ ++ ++RL+SG Sbjct: 61 DA-DIKIGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASG 119 Query: 181 EMRFVHSSCMASIGAVSN 198 E+R + C A++G V N Sbjct: 120 EVRMILGKCRATVGEVGN 137 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 38.8 bits (90), Expect = 0.001 Identities = 38/260 (14%), Positives = 74/260 (28%), Gaps = 96/260 (36%) Query: 2 ALKNFNPDTSGRRQLVMVDRNSLH----SGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGG 57 L N T + + ++ +N + + +P + + ++ F G G Sbjct: 107 KLLQENDTTLVKTKELI--KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164 Query: 58 HKNRYRLVDFK--RGEYGLEGVVKRLEYDPNRTAFIA-LISYSNGSLAYILAPQRLSVGD 114 + + Y F+ R Y Y + LI A L L Sbjct: 165 NTDDY----FEELRDLYQT--------YHV----LVGDLIK----FSAETL--SELIRTT 202 Query: 115 KVISSDSA-------VDVK---------PGNA--------MPLRFIPVGSIVH------N 144 A +++ P PL I V + H Sbjct: 203 -----LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL--IGVIQLAHYVVTAKL 255 Query: 145 VEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCM---ASIGAVSNQDH 201 + PG ++ R+ L+ ++G HS + +I + + Sbjct: 256 LGFTPG---EL----------------RSYLKGATG-----HSQGLVTAVAIAETDSWES 291 Query: 202 SNVNHAKAGRAR-WLGMRSH 220 V+ KA ++G+R + Sbjct: 292 FFVSVRKAITVLFFIGVRCY 311 Score = 38.0 bits (88), Expect = 0.002 Identities = 49/304 (16%), Positives = 71/304 (23%), Gaps = 169/304 (55%) Query: 2 ALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKNR 61 +L N G + LV+ SG P +SL GL Sbjct: 369 SLVN------GAKNLVV-------SG-PPQSL-YGLNL---------------------- 391 Query: 62 YRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDS 121 L K GL D +R I +S +R Sbjct: 392 -TLRKAKAPS-GL---------DQSR------IPFS----------ER------------ 412 Query: 122 AVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSY----ARLVERDRSRALLRL 177 K RF+PV S H+ + L+ +D + + Sbjct: 413 ----KL--KFSNRFLPVASPFHS----------------HLLVPASDLINKDLVKNNVSF 450 Query: 178 SSGEMRF-VHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSH--------VRGVAMNP 228 ++ +++ V+ G +R V + P Sbjct: 451 NAKDIQIPVY-------------------DTFDGS----DLRVLSGSISERIVDCIIRLP 487 Query: 229 VDHP--------H----G-GGEGKTSGGRNPCSPWGKLTK----GKRTR--------SNK 263 V H G GG SG G LT G R N Sbjct: 488 VKWETTTQFKATHILDFGPGG---ASG-------LGVLTHRNKDGTGVRVIVAGTLDINP 537 Query: 264 STDV 267 D Sbjct: 538 DDDY 541 Score = 34.1 bits (78), Expect = 0.038 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 29/84 (34%) Query: 207 AKAGRARWLGMRSHVR---GVAM------NPVDHP-HGGGEGKTSGGRNPCSPWGKLTKG 256 +KA + W +H + G ++ NPV+ H GGE KG Sbjct: 1639 SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE-----------------KG 1681 Query: 257 KRTRSNKSTDVF--IARSRHKNKK 278 KR R N S +F I + K +K Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEK 1705 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 32.5 bits (73), Expect = 0.096 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 11/47 (23%) Query: 56 GGHKNRYRLVDFKRGEYGLEGVVKRLEYDPNRTAFI-ALISYSNGSL 101 G + R+ + F GE+ LEG V+ A+I ISY NG+L Sbjct: 832 GSARTRWEMEAF--GEFSLEGCVE--------MAWIMGFISYHNGNL 868 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 30.7 bits (68), Expect = 0.41 Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 6/29 (20%) Query: 106 APQRLSVGDKVISSDSAVDVKPGNAMPLR 134 A ++L K+ + DSA P A+ ++ Sbjct: 21 ALKKLQASLKLYADDSA----P--ALAIK 43 >1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A* Length = 303 Score = 26.8 bits (58), Expect = 5.2 Identities = 9/64 (14%), Positives = 15/64 (23%) Query: 159 AGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMR 218 + A R ++ + GE V A + A + A Sbjct: 22 GATIAHYTSRGAQVHVVTCTLGEEGEVIGDRWAQLTADHADQLGGYRIGELTAALRALGV 81 Query: 219 SHVR 222 S Sbjct: 82 SAPI 85 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.317 0.134 0.396 Gapped Lambda K H 0.267 0.0583 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,330,955 Number of extensions: 103427 Number of successful extensions: 238 Number of sequences better than 10.0: 1 Number of HSP's gapped: 211 Number of HSP's successfully gapped: 16 Length of query: 278 Length of database: 5,693,230 Length adjustment: 91 Effective length of query: 187 Effective length of database: 3,487,026 Effective search space: 652073862 Effective search space used: 652073862 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 56 (25.7 bits)