RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780258|ref|YP_003064671.1| 50S ribosomal protein L2
[Candidatus Liberibacter asiaticus str. psy62]
         (278 letters)



>3ofq_C 50S ribosomal protein L2; protein biosynthesis, ribosomes, RNA,
           tRNA, transfer, antibi EXIT, peptidyl, ribosomal
           subunit, large; 3.10A {Escherichia coli} PDB: 3fik_C
           2wwq_C 3ofr_C* 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C
           2vhn_C 3bbx_C 3df2_C 3df4_C 1vt2_C 3i1p_C 3i1r_C 3i1t_C
           3i20_C 3i22_C 3kcr_6 ...
          Length = 271

 Score =  312 bits (801), Expect = 5e-86
 Identities = 153/272 (56%), Positives = 187/272 (68%), Gaps = 2/272 (0%)

Query: 2   ALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKNR 61
           A+    P + GRR +V V    LH GKP   L       GGRNN GR+T R  GGGHK  
Sbjct: 1   AVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRNNNGRITTRHIGGGHKQA 60

Query: 62  YRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDS 121
           YR+VDFKR + G+  VV+RLEYDPNR+A IAL+ Y +G   YILAP+ L  GD++ S   
Sbjct: 61  YRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQSGVD 120

Query: 122 AVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGE 181
           A  +KPGN +P+R IPVGS VHNVEMKPGKGGQ++RSAG+Y ++V RD +   LRL SGE
Sbjct: 121 A-AIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGE 179

Query: 182 MRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGKTS 241
           MR V + C A++G V N +H      KAG ARW G+R  VRG AMNPVDHPHGGGEG+ +
Sbjct: 180 MRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGR-N 238

Query: 242 GGRNPCSPWGKLTKGKRTRSNKSTDVFIARSR 273
            G++P +PWG  TKGK+TRSNK TD FI R R
Sbjct: 239 FGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRR 270


>3i1n_C 50S ribosomal protein L2; ribosome structure, protein-RNA complex,
           acetylation, ribonucleoprotein, ribosomal protein,
           RNA-binding, rRNA- binding, methylation; 3.19A
           {Escherichia coli k-12} PDB: 1vs8_C 2aw4_C 2awb_C 2vhm_C
           2vhn_C 3bbx_C 3df2_C 3df4_C 1vs6_C 3i1p_C 3i1r_C 3i1t_C
           3i20_C 3i22_C 2qam_C* 1p85_A 1p86_A 2i2v_C 2i2t_C*
           2qao_C* ...
          Length = 273

 Score =  274 bits (702), Expect = 2e-74
 Identities = 155/275 (56%), Positives = 189/275 (68%), Gaps = 2/275 (0%)

Query: 1   MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKN 60
           MA+    P + GRR +V V    LH GKP   L       GGRNN GR+T R  GGGHK 
Sbjct: 1   MAVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRNNNGRITTRHIGGGHKQ 60

Query: 61  RYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSD 120
            YR+VDFKR + G+  VV+RLEYDPNR+A IAL+ Y +G   YILAP+ L  GD++ S  
Sbjct: 61  AYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQSGV 120

Query: 121 SAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSG 180
            A  +KPGN +P+R IPVGS VHNVEMKPGKGGQ++RSAG+Y ++V RD +   LRL SG
Sbjct: 121 DA-AIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSG 179

Query: 181 EMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGKT 240
           EMR V + C A++G V N +H      KAG ARW G+R  VRG AMNPVDHPHGGGEG+ 
Sbjct: 180 EMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGR- 238

Query: 241 SGGRNPCSPWGKLTKGKRTRSNKSTDVFIARSRHK 275
           + G++P +PWG  TKGK+TRSNK TD FI R R K
Sbjct: 239 NFGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRSK 273


>2j01_D 50S ribosomal protein L2; ribosome, tRNA, paromomycin, mRNA,
           translation; 2.8A {Thermus thermophilus} SCOP: b.34.5.3
           b.40.4.5 PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D
           2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D
           2wh2_D 2wh4_D 3d5b_D 3d5d_D 3f1f_D 3f1h_D ...
          Length = 276

 Score =  266 bits (680), Expect = 5e-72
 Identities = 144/277 (51%), Positives = 189/277 (68%), Gaps = 3/277 (1%)

Query: 1   MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKN 60
           MA+K F P T  RR + + D + +   +P KSL + L   GGRNN GR+T+RFRGGGHK 
Sbjct: 1   MAVKKFKPYTPSRRFMTVADFSEITKTEPEKSLVKPLKKTGGRNNQGRITVRFRGGGHKR 60

Query: 61  RYRLVDFKRGEY-GLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISS 119
            YR++DFKR +  G+   V  +EYDPNR+A IAL+ Y +G   YI+AP  L VG +V++ 
Sbjct: 61  LYRIIDFKRWDKVGIPAKVAAIEYDPNRSARIALLHYVDGEKRYIIAPDGLQVGQQVVAG 120

Query: 120 DSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSS 179
             A  ++ GNA+PLRFIPVG++VH VE++P KG +++R+AG+ A++  R+    +LRL S
Sbjct: 121 PDA-PIQVGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGREGDYVILRLPS 179

Query: 180 GEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGK 239
           GE+R VH  C A++GAV N DH N+   KAGR+RWLG R HVRG AMNPVDHPHGGGEG+
Sbjct: 180 GELRKVHGECYATVGAVGNADHKNIVLGKAGRSRWLGRRPHVRGAAMNPVDHPHGGGEGR 239

Query: 240 TSGGRNPCSPWGKLTKGKRTRSN-KSTDVFIARSRHK 275
              GR P SPWG  TKG +TR   K +  FI   R K
Sbjct: 240 APRGRPPASPWGWQTKGLKTRKRRKPSSRFIIARRKK 276


>3bbo_E Ribosomal protein L2; large ribosomal subunit, spinach chloroplast
           ribosome, ribonucleoprotein particle, macromolecular
           complex; 9.40A {Spinacea oleracea}
          Length = 269

 Score =  233 bits (596), Expect = 3e-62
 Identities = 118/274 (43%), Positives = 165/274 (60%), Gaps = 9/274 (3%)

Query: 1   MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKG-GRNNTGRVTMRFRGGGHK 59
           MA+  +   TS  R   +  +       P  +L  G    G GRN  G +T R RGGGHK
Sbjct: 1   MAIHLYKTSTSSTRNGAVQVK-----SNPRNNLISGQRRCGKGRNARGIITARHRGGGHK 55

Query: 60  NRYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISS 119
             YR +DF+R E  + G +  +EYDPNR A+I LI Y +G   YIL P+   +GD ++S 
Sbjct: 56  RLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSG 115

Query: 120 DSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSS 179
                +K GNA+PL  +P+G+ +HN+E+  G+GGQ++R+AG+ A+L+ ++   A L+L S
Sbjct: 116 TEV-PIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPS 174

Query: 180 GEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGK 239
           GE+R +  +C A++G V N   +     +AG  RWLG R  VRGV MNPVDHPHGGGEG+
Sbjct: 175 GEVRLISKNCSATVGQVGNVGVNQKRLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGR 234

Query: 240 TSGGRN-PCSPWGKLTKGKRTRS-NKSTDVFIAR 271
              GR  P +PWG    G+R+R  NK +D FI R
Sbjct: 235 APIGRKSPTTPWGYPALGRRSRKRNKYSDNFIIR 268


>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis,
           LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB:
           1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D
          Length = 178

 Score =  224 bits (572), Expect = 2e-59
 Identities = 82/179 (45%), Positives = 122/179 (68%), Gaps = 6/179 (3%)

Query: 61  RYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSD 120
           +YR++DFKR + G+ G V  +EYDPNR+A IALI+Y++G   YI+AP+ L VG +++S  
Sbjct: 1   QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADGEKRYIIAPKNLKVGMEIMSGP 60

Query: 121 SAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSG 180
            A D+K GNA+PL  IPVG++VHN+E+KPG+GGQ+ R+AG+ A+++ ++    ++RL+SG
Sbjct: 61  DA-DIKIGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASG 119

Query: 181 EMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGM-----RSHVRGVAMNPVDHPHG 234
           E+R +   C A++G V N   ++    KAG              +VRGVAMN VDHP G
Sbjct: 120 EVRMILGKCRATVGEVGNGGRTDKPFVKAGNKHHKMKARGTKWPNVRGVAMNAVDHPFG 178


>2zkr_a 60S ribosomal protein L8; protein-RNA complex, 60S ribosomal
           subunit, ribosomal protein/RNA complex; 8.70A {Canis
           familiaris} PDB: 1s1i_B
          Length = 257

 Score =  200 bits (511), Expect = 2e-52
 Identities = 68/263 (25%), Positives = 119/263 (45%), Gaps = 25/263 (9%)

Query: 27  GKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKNRYRLVDFKRGEYGLEGVVKRLEYDPN 86
           G+ I+   +G        +  R  ++ R G  +   R VDF      ++G+VK + +DP 
Sbjct: 2   GRVIRGQRKG------AGSVFRAHVKHRKGAAR--LRAVDFAERHGYIKGIVKDIIHDPG 53

Query: 87  RTAFIALISYSNGS-----LAYILAPQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGSI 141
           R A +A + + +           +A + +  G  V     A  +  GN +P+  +P G+I
Sbjct: 54  RGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKA-QLNIGNVLPVGTMPEGTI 112

Query: 142 VHNVEMKPGKGGQISRSAGSYARLVERDR--SRALLRLSSGEMRFVHSSCMASIGAVSNQ 199
           V  +E KPG  G+++R++G+YA ++  +    +  ++L SG  + + S+  A +G V+  
Sbjct: 113 VCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGG 172

Query: 200 DHSNVNHAKAGRAR-----WLGMRSHVRGVAMNPVDHPHGGGEGKTSGGRNPCS---PWG 251
              +    KAGRA             VRGVAMNPV+HP GGG  +  G  +      P G
Sbjct: 173 GRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAG 232

Query: 252 KLTKGKRTR-SNKSTDVFIARSR 273
           +       R + +       + +
Sbjct: 233 RKVGLIAARRTGRLRGTKTVQEK 255


>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex,
           RNA-RNA complex, protein-RNA complex, peptidyl
           transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
           2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5
           PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A*
           1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A*
           1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A*
           ...
          Length = 240

 Score =  197 bits (503), Expect = 2e-51
 Identities = 80/226 (35%), Positives = 118/226 (52%), Gaps = 10/226 (4%)

Query: 47  GRVTMRFRGGGHKNRYRLVDFKR-GEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYIL 105
           GR T  FR   H+ +  L   K      + G V  +E+DP R+A +A + + +G    IL
Sbjct: 11  GRGTSTFRAPSHRYKADLEHRKVEDGDVIAGTVVDIEHDPARSAPVAAVEFEDGDRRLIL 70

Query: 106 APQRLSVGDKVISSDSAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARL 165
           AP+ + VGD++    SA ++ PGN +PL  IP G  V NVE  PG GG+ +R++G  A+L
Sbjct: 71  APEGVGVGDELQVGVSA-EIAPGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQL 129

Query: 166 VERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWL-----GMRSH 220
           +  DR+ A+++L SGEM+ +   C A+IG V+    ++    KAG              +
Sbjct: 130 LTHDRNVAVVKLPSGEMKRLDPQCRATIGVVAGGGRTDKPFVKAGNKHHKMKARGTKWPN 189

Query: 221 VRGVAMNPVDHPHGGGEGKTSGGRNPCS---PWGKLTKGKRTRSNK 263
           VRGVAMN VDHP GGG  +  G     S   P G+      ++   
Sbjct: 190 VRGVAMNAVDHPFGGGGRQHPGKPKSISRNAPPGRKVGDIASKRTG 235


>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large
           ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus}
           PDB: 3iy9_B
          Length = 136

 Score =  144 bits (365), Expect = 2e-35
 Identities = 49/137 (35%), Positives = 82/137 (59%), Gaps = 5/137 (3%)

Query: 78  VKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDS----AVDVKPGNAMPL 133
           V ++ YDP R+A IAL+        +I+A + +  GD +++S+     AV  + G+A PL
Sbjct: 1   VIQVRYDPCRSADIALV-AGGSRKRWIIATENMQAGDTILNSNHIGRMAVAAREGDAHPL 59

Query: 134 RFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCMASI 193
             +PVG++++NVE +PG+G Q  R+AG+   L+ +    A+++L S     V  +C+A++
Sbjct: 60  GALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLETCVATV 119

Query: 194 GAVSNQDHSNVNHAKAG 210
           G VSN DH+     KAG
Sbjct: 120 GRVSNVDHNKRVIGKAG 136


>1rl2_A Protein (ribosomal protein L2); RNA-binding domain,
           peptidyltransferease center, X-RAY diffraction; 2.30A
           {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5
           PDB: 1c04_A 487d_I
          Length = 137

 Score =  140 bits (355), Expect = 3e-34
 Identities = 67/138 (48%), Positives = 104/138 (75%), Gaps = 1/138 (0%)

Query: 61  RYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSD 120
           +YR++DFKR + G+ G V  +EYDPNR+A IALI+Y++G   YI+AP+ L VG +++S  
Sbjct: 1   QYRIIDFKRDKDGIPGRVATIEYDPNRSANIALINYADGEKRYIIAPKNLKVGMEIMSGP 60

Query: 121 SAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSG 180
            A D+K GNA+PL  IPVG++VHN+E+KPG+GGQ+ R+AG+ A+++ ++    ++RL+SG
Sbjct: 61  DA-DIKIGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASG 119

Query: 181 EMRFVHSSCMASIGAVSN 198
           E+R +   C A++G V N
Sbjct: 120 EVRMILGKCRATVGEVGN 137


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 38/260 (14%), Positives = 74/260 (28%), Gaps = 96/260 (36%)

Query: 2   ALKNFNPDTSGRRQLVMVDRNSLH----SGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGG 57
            L   N  T  + + ++  +N +     + +P    +     +       ++   F G G
Sbjct: 107 KLLQENDTTLVKTKELI--KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164

Query: 58  HKNRYRLVDFK--RGEYGLEGVVKRLEYDPNRTAFIA-LISYSNGSLAYILAPQRLSVGD 114
           + + Y    F+  R  Y          Y       +  LI       A  L    L    
Sbjct: 165 NTDDY----FEELRDLYQT--------YHV----LVGDLIK----FSAETL--SELIRTT 202

Query: 115 KVISSDSA-------VDVK---------PGNA--------MPLRFIPVGSIVH------N 144
                  A       +++          P            PL  I V  + H       
Sbjct: 203 -----LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL--IGVIQLAHYVVTAKL 255

Query: 145 VEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSGEMRFVHSSCM---ASIGAVSNQDH 201
           +   PG   ++                R+ L+ ++G     HS  +    +I    + + 
Sbjct: 256 LGFTPG---EL----------------RSYLKGATG-----HSQGLVTAVAIAETDSWES 291

Query: 202 SNVNHAKAGRAR-WLGMRSH 220
             V+  KA     ++G+R +
Sbjct: 292 FFVSVRKAITVLFFIGVRCY 311



 Score = 38.0 bits (88), Expect = 0.002
 Identities = 49/304 (16%), Positives = 71/304 (23%), Gaps = 169/304 (55%)

Query: 2   ALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKNR 61
           +L N      G + LV+       SG P +SL  GL                        
Sbjct: 369 SLVN------GAKNLVV-------SG-PPQSL-YGLNL---------------------- 391

Query: 62  YRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDS 121
             L   K    GL         D +R      I +S          +R            
Sbjct: 392 -TLRKAKAPS-GL---------DQSR------IPFS----------ER------------ 412

Query: 122 AVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSY----ARLVERDRSRALLRL 177
               K       RF+PV S  H+                      + L+ +D  +  +  
Sbjct: 413 ----KL--KFSNRFLPVASPFHS----------------HLLVPASDLINKDLVKNNVSF 450

Query: 178 SSGEMRF-VHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSH--------VRGVAMNP 228
           ++ +++  V+                       G      +R          V  +   P
Sbjct: 451 NAKDIQIPVY-------------------DTFDGS----DLRVLSGSISERIVDCIIRLP 487

Query: 229 VDHP--------H----G-GGEGKTSGGRNPCSPWGKLTK----GKRTR--------SNK 263
           V           H    G GG    SG        G LT     G   R         N 
Sbjct: 488 VKWETTTQFKATHILDFGPGG---ASG-------LGVLTHRNKDGTGVRVIVAGTLDINP 537

Query: 264 STDV 267
             D 
Sbjct: 538 DDDY 541



 Score = 34.1 bits (78), Expect = 0.038
 Identities = 23/84 (27%), Positives = 33/84 (39%), Gaps = 29/84 (34%)

Query: 207  AKAGRARWLGMRSHVR---GVAM------NPVDHP-HGGGEGKTSGGRNPCSPWGKLTKG 256
            +KA +  W    +H +   G ++      NPV+   H GGE                 KG
Sbjct: 1639 SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGE-----------------KG 1681

Query: 257  KRTRSNKSTDVF--IARSRHKNKK 278
            KR R N S  +F  I   + K +K
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEK 1705


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 32.5 bits (73), Expect = 0.096
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 11/47 (23%)

Query: 56  GGHKNRYRLVDFKRGEYGLEGVVKRLEYDPNRTAFI-ALISYSNGSL 101
           G  + R+ +  F  GE+ LEG V+         A+I   ISY NG+L
Sbjct: 832 GSARTRWEMEAF--GEFSLEGCVE--------MAWIMGFISYHNGNL 868


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.7 bits (68), Expect = 0.41
 Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 6/29 (20%)

Query: 106 APQRLSVGDKVISSDSAVDVKPGNAMPLR 134
           A ++L    K+ + DSA    P  A+ ++
Sbjct: 21  ALKKLQASLKLYADDSA----P--ALAIK 43


>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside
           deacetylase (MSHB); rossmann fold, zinc aminohydrolase;
           HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP:
           c.134.1.1 PDB: 1q7t_A*
          Length = 303

 Score = 26.8 bits (58), Expect = 5.2
 Identities = 9/64 (14%), Positives = 15/64 (23%)

Query: 159 AGSYARLVERDRSRALLRLSSGEMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMR 218
             + A    R     ++  + GE   V     A + A            +   A      
Sbjct: 22  GATIAHYTSRGAQVHVVTCTLGEEGEVIGDRWAQLTADHADQLGGYRIGELTAALRALGV 81

Query: 219 SHVR 222
           S   
Sbjct: 82  SAPI 85


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,330,955
Number of extensions: 103427
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 16
Length of query: 278
Length of database: 5,693,230
Length adjustment: 91
Effective length of query: 187
Effective length of database: 3,487,026
Effective search space: 652073862
Effective search space used: 652073862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)