BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780258|ref|YP_003064671.1| 50S ribosomal protein L2
[Candidatus Liberibacter asiaticus str. psy62]
         (278 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780258|ref|YP_003064671.1| 50S ribosomal protein L2 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 278

 Score =  565 bits (1457), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 278/278 (100%), Positives = 278/278 (100%)

Query: 1   MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKN 60
           MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKN
Sbjct: 1   MALKNFNPDTSGRRQLVMVDRNSLHSGKPIKSLTRGLCSKGGRNNTGRVTMRFRGGGHKN 60

Query: 61  RYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSD 120
           RYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSD
Sbjct: 61  RYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSD 120

Query: 121 SAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSG 180
           SAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSG
Sbjct: 121 SAVDVKPGNAMPLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARLVERDRSRALLRLSSG 180

Query: 181 EMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGKT 240
           EMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGKT
Sbjct: 181 EMRFVHSSCMASIGAVSNQDHSNVNHAKAGRARWLGMRSHVRGVAMNPVDHPHGGGEGKT 240

Query: 241 SGGRNPCSPWGKLTKGKRTRSNKSTDVFIARSRHKNKK 278
           SGGRNPCSPWGKLTKGKRTRSNKSTDVFIARSRHKNKK
Sbjct: 241 SGGRNPCSPWGKLTKGKRTRSNKSTDVFIARSRHKNKK 278


>gi|254780459|ref|YP_003064872.1| hypothetical protein CLIBASIA_01720 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 129

 Score = 26.2 bits (56), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 12/45 (26%), Positives = 22/45 (48%)

Query: 83  YDPNRTAFIALISYSNGSLAYILAPQRLSVGDKVISSDSAVDVKP 127
           YD N+   ++  + ++  LAY  AP       ++ S +   +VKP
Sbjct: 20  YDLNKQVIVSPYTQNSWPLAYFEAPTSPEKEKEICSLEEETEVKP 64


>gi|254780474|ref|YP_003064887.1| ubiquinol oxidase, subunit II [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 332

 Score = 23.9 bits (50), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 15/34 (44%)

Query: 132 PLRFIPVGSIVHNVEMKPGKGGQISRSAGSYARL 165
           PL F    S V N    PG  GQI   AG   +L
Sbjct: 175 PLEFRITASSVMNSFYIPGLAGQIYAMAGMETKL 208


>gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 424

 Score = 23.1 bits (48), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)

Query: 57  GHKNRYRLVDFKRGEYGLEGVVKRLEYDPNRTAFIALISYSNGSLAYILAPQRLSVGDKV 116
           G  N+ RL     G   + GV   +     +T+ + L  Y  G  A+IL    +++ +  
Sbjct: 97  GTPNKSRL-----GANAILGVSLAVSKAAAQTSNLPLYKYLGGCSAHILPVPLMNILNGG 151

Query: 117 ISSDSAVDVKPGNAMPL 133
           I +D+A+D +    MP+
Sbjct: 152 IHADNALDFQEFMIMPV 168


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.134    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 178,533
Number of Sequences: 1233
Number of extensions: 7437
Number of successful extensions: 8
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 278
length of database: 328,796
effective HSP length: 73
effective length of query: 205
effective length of database: 238,787
effective search space: 48951335
effective search space used: 48951335
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 38 (19.2 bits)