Conserved Domains in CDD Database Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity Alignment graph Length
Definition
E-value
Target 110
50S ribosomal protein L23 [Candidatus Liberibacter asia
PRK05738 92
PRK05738, rplW, 50S ribosomal protein L23; Reviewed
2e-24
CHL00030 93
CHL00030, rpl23, ribosomal protein L23
9e-16
pfam00276 90
pfam00276, Ribosomal_L23, Ribosomal protein L23
6e-13
PRK12280 158
PRK12280, rplW, 50S ribosomal protein L23; Reviewed
3e-12
COG0089 94
COG0089, RplW, Ribosomal protein L23 [Translation, ribo
4e-17
PRK14548 84
PRK14548, PRK14548, 50S ribosomal protein L23P; Provisi
1e-10
TIGR03636 77
TIGR03636, L23_arch, archaeal ribosomal protein L23
2e-08
PTZ00191 145
PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisi
1e-06
KOG1751 157
KOG1751, KOG1751, KOG1751, 60s ribosomal protein L23 [T
0.002
>gnl|CDD|180228 PRK05738, rplW, 50S ribosomal protein L23; Reviewed
Back Show alignment and domain information
Score = 105 bits (265), Expect = 2e-24
Identities = 53/105 (50%), Positives = 59/105 (56%), Gaps = 14/105 (13%)
Query: 7 YDTIISPVIAEKSTLLA-GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65
YD I PVI EKSTLL QN+ VF V D++K EIK+AVE LF VKV SVNTL KGK
Sbjct: 1 YDVIKRPVITEKSTLLMEKQNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGKT 60
Query: 66 KRLSRISAARSRVRSSRDMYVSRKDVKRAFVTLAKGYSIDISAGV 110
KR R R D K+A VTLA+G ID G
Sbjct: 61 KRFGRRIG-------------KRSDWKKAIVTLAEGQKIDFFGGA 92
>gnl|CDD|176971 CHL00030, rpl23, ribosomal protein L23
Back Show alignment and domain information
Score = 77.3 bits (191), Expect = 9e-16
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 7 YDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVK 66
D I PV +KS L +NQ F+V S+K+EIK +E F VKV++VN+ K +
Sbjct: 1 MDGIKYPVFTDKSIRLLEKNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRKKR 60
Query: 67 RLSRISAARSRVRSSRDMYVSRKDVKRAFVTLAKGYSI 104
R+ I + KR +TL GYSI
Sbjct: 61 RMGPIMGHKMH-------------YKRMIITLQPGYSI 85
>gnl|CDD|144021 pfam00276, Ribosomal_L23, Ribosomal protein L23
Back Show alignment and domain information
Score = 67.8 bits (166), Expect = 6e-13
Identities = 41/100 (41%), Positives = 53/100 (53%), Gaps = 14/100 (14%)
Query: 8 DTIISPVIAEKSTLLAGQ-NQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVK 66
D I P+I EK+ L + NQ VF V K ++K+EIK AVE +F VKV VNTLI GKVK
Sbjct: 1 DVIKYPIITEKAMNLLEKPNQYVFIVDKKANKTEIKDAVEHIFGVKVEKVNTLILPGKVK 60
Query: 67 RLSRISAARSRVRSSRDMYVSRKDVKRAFVTLAKGYSIDI 106
R + +K K+A VTL +G +
Sbjct: 61 RNGQY-------------LGRKKSYKKAIVTLEEGDILPF 87
>gnl|CDD|183398 PRK12280, rplW, 50S ribosomal protein L23; Reviewed
Back Show alignment and domain information
Score = 65.6 bits (160), Expect = 3e-12
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 13/97 (13%)
Query: 10 IISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLS 69
I P++ EKS L +N F V + ++K EIK AVE +F VKV+ VN K KRL
Sbjct: 7 IKKPILTEKSYSLMSKNVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDKKPKRLG 66
Query: 70 RISAARSRVRSSRDMYVSRKDVKRAFVTLAKGYSIDI 106
R + K+A+VTLA+GYSI++
Sbjct: 67 RFPGFTNS-------------YKKAYVTLAEGYSINL 90
>gnl|CDD|30438 COG0089, RplW, Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Score = 81.4 bits (201), Expect = 4e-17
Identities = 49/105 (46%), Positives = 59/105 (56%), Gaps = 13/105 (12%)
Query: 7 YDTIISPVIAEKSTLLA-GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65
YD I SPV+ EK+ LL +N+ VF V D++K EIK+AVE LF VKV VNTL KGK
Sbjct: 2 YDVIKSPVVTEKAMLLMEKENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKT 61
Query: 66 KRLSRISAARSRVRSSRDMYVSRKDVKRAFVTLAKGYSIDISAGV 110
KR RKD K+A+VTL +G SID G
Sbjct: 62 KRAGVKRIGL------------RKDYKKAYVTLKEGQSIDFFGGA 94
>gnl|CDD|184736 PRK14548, PRK14548, 50S ribosomal protein L23P; Provisional
Back Show alignment and domain information
Score = 60.3 bits (147), Expect = 1e-10
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 7 YDTIISPVIAEKSTLLA-GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIR-KGK 64
Y I P++ EK+ L +N++ F V + ++K +IK AVE LF VKV VNTLI KG+
Sbjct: 2 YSIIKYPLVTEKAMNLIEKENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE 61
Query: 65 VK 66
K
Sbjct: 62 KK 63
>gnl|CDD|132675 TIGR03636, L23_arch, archaeal ribosomal protein L23
Back Show alignment and domain information
Score = 52.6 bits (127), Expect = 2e-08
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 13 PVIAEKST-LLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRK 62
P++ EK+ L+ +N++ F V + ++K +IK AVE LF VKV VNTLI
Sbjct: 1 PLVTEKAMNLIEKENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP 51
This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts. Length = 77
>gnl|CDD|185507 PTZ00191, PTZ00191, 60S ribosomal protein L23a; Provisional
Back Show alignment and domain information
Score = 46.6 bits (111), Expect = 1e-06
Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 6 FYDTIISPVIAEKST-LLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIR-KG 63
Y I P+ EK+ + N +VF V + ++K++IK AVE L+ VKVV VNTLI G
Sbjct: 62 KYSIIKYPLTTEKAMKKIEDNNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDG 121
Query: 64 KVKRLSRISA 73
K R+S
Sbjct: 122 LKKAYIRLSP 131
>gnl|CDD|36962 KOG1751, KOG1751, KOG1751, 60s ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Score = 36.1 bits (83), Expect = 0.002
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 6 FYDTIISPVIAEKSTLLAGQ-NQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGK 64
+ I P+ E + N +VF V ++K +IK AV+ L+ V VNTLIR
Sbjct: 74 YAIIIKFPLTTESAMKKIEDNNTLVFIVDSKANKHQIKQAVKKLYDTDVAKVNTLIRPDG 133
Query: 65 VKR 67
K+
Sbjct: 134 EKK 136
Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity Alignment graph Length
Definition
Probability
Target
110
50S ribosomal protein L23 [Candidatus Liberibacter asia
PRK12280 160
rplW 50S ribosomal protein L23; Reviewed
100.0
CHL00030 92
rpl23 ribosomal protein L23
100.0
pfam00276 90
Ribosomal_L23 Ribosomal protein L23.
100.0
PRK05738 91
rplW 50S ribosomal protein L23; Reviewed
99.98
COG0089 94
RplW Ribosomal protein L23 [Translation, ribosomal stru
99.97
PTZ00191 150
60S ribosomal protein L23a; Provisional
99.87
TIGR03636 77
L23_arch archaeal ribosomal protein L23. This model des
99.86
KOG1751 157
consensus
99.67
KOG4089 165
consensus
97.99
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Back Show alignment and domain information
Probab=100.00 E-value=3.6e-36 Score=229.46 Aligned_cols=93 Identities=39% Similarity=0.540 Sum_probs=89.3
Q ss_pred CHHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 25786760032079988886489099998887898899999999968743378998518963331122466443223454
Q gi|254780259|r 4 IRFYDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRD 83 (110)
Q Consensus 4 ~~~~~vi~~P~~TEKs~~~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~ 83 (110)
T Consensus 1 M~~~~VIk~PviTEKs~~l~e~nkYtF~V~~~AnK~eIK~AVE~iF~VkV~kVNt~nv~~K~KR~Gr~~G~~-------- 72 (160)
T PRK12280 1 MNLNEVIKYPILTEKSYQLMEKNVYTFKVDPKANKIEIKKAVEFIFNVKVEKVNIFNVDKKPKRLGRFKGFT-------- 72 (160)
T ss_pred CCHHHHHHCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCC--------
T ss_conf 987887451502586787887393899989989989999999998297688996243699871036335556--------
Q ss_pred CCCCCCCCEEEEEECCCCCEECCCCC
Q ss_conf 44345881389999589973133248
Q gi|254780259|r 84 MYVSRKDVKRAFVTLAKGYSIDISAG 109 (110)
Q Consensus 84 ~~~k~~~~KKAiVtL~~G~~I~~~~g 109 (110)
T Consensus 73 -----~~~KKAiVtL~~G~~I~lf~e 93 (160)
T PRK12280 73 -----NKYKKAYVTLAEGYKINLFEE 93 (160)
T ss_pred -----CCCEEEEEECCCCCEEEECCC
T ss_conf -----876589998589997776877
>CHL00030 rpl23 ribosomal protein L23
Back Show alignment and domain information
Probab=100.00 E-value=4.6e-34 Score=217.34 Aligned_cols=90 Identities=40% Similarity=0.535 Sum_probs=84.8
Q ss_pred HHHHHHCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 86760032079988886489099998887898899999999968743378998518963331122466443223454443
Q gi|254780259|r 7 YDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDMYV 86 (110)
Q Consensus 7 ~~vi~~P~~TEKs~~~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~~~ 86 (110)
T Consensus 1 md~Ik~PviTEKs~~l~e~n~Y~F~V~~~a~K~eIK~aVE~~f~VkV~~Vnt~~~~gK~kr~g~~~-------------G 67 (92)
T CHL00030 1 MDGIKYPVFTDKSIRLLGKNQYTFNVDSGSTKTEIKHWIELFFGVKVIAMNSHRLPGKGRRMGPIL-------------G 67 (92)
T ss_pred CCCCCCCEECHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCEEECCCC-------------E
T ss_conf 973233371486777777897999989999989999999987398799998187289744778944-------------4
Q ss_pred CCCCCEEEEEECCCCCEECCCCC
Q ss_conf 45881389999589973133248
Q gi|254780259|r 87 SRKDVKRAFVTLAKGYSIDISAG 109 (110)
Q Consensus 87 k~~~~KKAiVtL~~G~~I~~~~g 109 (110)
T Consensus 68 ~~~~~KKAiVtL~~G~~I~~F~~ 90 (92)
T CHL00030 68 HTMHYKRMIITLQPGYSIPLFRK 90 (92)
T ss_pred ECCCCEEEEEEECCCCEECCCCC
T ss_conf 31798899999189798378878
>pfam00276 Ribosomal_L23 Ribosomal protein L23
Back Show alignment and domain information
Probab=100.00 E-value=9.7e-33 Score=209.74 Aligned_cols=89 Identities=46% Similarity=0.571 Sum_probs=82.3
Q ss_pred HHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 67600320799888864-89099998887898899999999968743378998518963331122466443223454443
Q gi|254780259|r 8 DTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDMYV 86 (110)
Q Consensus 8 ~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~~~ 86 (110)
T Consensus 1 dii~~PviTEKs~~l~e~~n~y~F~V~~~anK~eIK~ave~~f~VkV~~Vnt~~~~gK~kR~g~~~-------------g 67 (90)
T pfam00276 1 DVIKYPIITEKAMNLLEKPNQYVFIVDKKANKTEIKDAVEHIFGVKVEKVNTLILPGKVKRNGQYL-------------G 67 (90)
T ss_pred CEECCCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEEEEECCCCEEECCCC-------------E
T ss_conf 962465128888887886888999989999999999999998298678998898289735878833-------------3
Q ss_pred CCCCCEEEEEECCCCCEECCCCC
Q ss_conf 45881389999589973133248
Q gi|254780259|r 87 SRKDVKRAFVTLAKGYSIDISAG 109 (110)
Q Consensus 87 k~~~~KKAiVtL~~G~~I~~~~g 109 (110)
T Consensus 68 ~~~~~KKAiVtL~~g~~I~~~sk 90 (90)
T pfam00276 68 RKKSYKKAIVTLEEGDILPFASR 90 (90)
T ss_pred ECCCCEEEEEECCCCCEECCCCC
T ss_conf 04896899999289899645269
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Back Show alignment and domain information
Probab=99.98 E-value=2.2e-32 Score=207.66 Aligned_cols=90 Identities=58% Similarity=0.774 Sum_probs=83.8
Q ss_pred CCHHHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCC
Q ss_conf 5257867600320799888864-890999988878988999999999687433789985189633311224664432234
Q gi|254780259|r 3 NIRFYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSS 81 (110)
Q Consensus 3 ~~~~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~ 81 (110)
T Consensus 1 ~m~~~~ii~~PivTEKs~~l~e~~n~y~F~V~~~AnK~~Ik~ave~~f~VkV~~Vnt~~~~~K~kr~~~~~--------- 71 (91)
T PRK05738 1 MMRLYDVIKRPVITEKATLLMEKENKYVFKVDPDATKTEIKAAVEELFGVKVESVNTLNVKGKTKRFGRRV--------- 71 (91)
T ss_pred CCCHHHHHHHCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCEEECCCC---------
T ss_conf 95188756216237888987886887999989989999999999997199750898898389615778944---------
Q ss_pred CCCCCCCCCCEEEEEECCCCCEEC
Q ss_conf 544434588138999958997313
Q gi|254780259|r 82 RDMYVSRKDVKRAFVTLAKGYSID 105 (110)
Q Consensus 82 r~~~~k~~~~KKAiVtL~~G~~I~ 105 (110)
T Consensus 72 ----G~~~~~KKAiVtL~~G~~Id 91 (91)
T PRK05738 72 ----GKRSDWKKAYVTLAEGQSID 91 (91)
T ss_pred ----CCCCCCEEEEEEECCCCCCC
T ss_conf ----32489789999918989179
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=99.97 E-value=4.2e-31 Score=200.32 Aligned_cols=93 Identities=53% Similarity=0.695 Sum_probs=85.3
Q ss_pred HHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 7867600320799888864-890999988878988999999999687433789985189633311224664432234544
Q gi|254780259|r 6 FYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDM 84 (110)
Q Consensus 6 ~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~ 84 (110)
T Consensus 1 ~~dvI~~PvvTEKa~~l~~~~nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k~KR~~~------------k~ 68 (94)
T COG0089 1 LYDVIKSPVVTEKAMLLMEKENKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGKTKRAGV------------KR 68 (94)
T ss_pred CCCHHHCCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEEEEECCCCEEEEC------------CC
T ss_conf 922444350058789767557879999989899799999999985987788887872896038840------------35
Q ss_pred CCCCCCCEEEEEECCCCCEECCCCCC
Q ss_conf 43458813899995899731332489
Q gi|254780259|r 85 YVSRKDVKRAFVTLAKGYSIDISAGV 110 (110)
Q Consensus 85 ~~k~~~~KKAiVtL~~G~~I~~~~gi 110 (110)
T Consensus 69 ~G~~~~~kka~V~l~~G~~i~~~~~~ 94 (94)
T COG0089 69 IGLRKDYKKAYVTLKEGQSIDFFGGA 94 (94)
T ss_pred CCCCCCCCEEEEECCCCCEEEECCCC
T ss_conf 66376342047982689687612369
>PTZ00191 60S ribosomal protein L23a; Provisional
Back Show alignment and domain information
Probab=99.87 E-value=2.4e-22 Score=149.81 Aligned_cols=81 Identities=33% Similarity=0.523 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCC
Q ss_conf 85257867600320799888864-89099998887898899999999968743378998518963331122466443223
Q gi|254780259|r 2 INIRFYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRS 80 (110)
Q Consensus 2 ~~~~~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~ 80 (110)
T Consensus 63 ~klD~y~IIk~PltTEkAmkkiEd~NtLvFiVd~kAnK~qIK~AVekLydV~V~kVNTli~p~----------------- 125 (150)
T PTZ00191 63 KKLDKFNIIRYPLTTEKAMKKIEENNTLVFIVDSRANKTQIKKAVSKLYEVKVVKVNTLITPD----------------- 125 (150)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCEECEEEEEECCC-----------------
T ss_conf 788730255157568899999986587999978858989999999998398106686558689-----------------
Q ss_pred CCCCCCCCCCCEEEEEECCCCC-EECCCC
Q ss_conf 4544434588138999958997-313324
Q gi|254780259|r 81 SRDMYVSRKDVKRAFVTLAKGY-SIDISA 108 (110)
Q Consensus 81 ~r~~~~k~~~~KKAiVtL~~G~-~I~~~~ 108 (110)
T Consensus 126 ---------G~KKAyV~L~~d~dAlDvAn 145 (150)
T PTZ00191 126 ---------GLKKAYIRLSPDHDALDVAN 145 (150)
T ss_pred ---------CCEEEEEECCCCCCHHHHHH
T ss_conf ---------97789997799998999988
>TIGR03636 L23_arch archaeal ribosomal protein L23
Back Show alignment and domain information
Probab=99.86 E-value=1.2e-21 Score=145.86 Aligned_cols=70 Identities=43% Similarity=0.672 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 320799888864-8909999888789889999999996874337899851896333112246644322345444345881
Q gi|254780259|r 13 PVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDMYVSRKDV 91 (110)
Q Consensus 13 P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~~~k~~~~ 91 (110)
T Consensus 1 P~iTEKa~~~~e~~N~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~--------------------------~g~ 54 (77)
T TIGR03636 1 PLVTEKAMNLIEKENKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP--------------------------RGE 54 (77)
T ss_pred CCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCEECEEEEEECC--------------------------CCC
T ss_conf 924789999898689799998897998999999999819852579844868--------------------------997
Q ss_pred EEEEEECCCCC-EECCCC
Q ss_conf 38999958997-313324
Q gi|254780259|r 92 KRAFVTLAKGY-SIDISA 108 (110)
Q Consensus 92 KKAiVtL~~G~-~I~~~~ 108 (110)
T Consensus 55 KKAyV~L~~~~~A~dva~ 72 (77)
T TIGR03636 55 KKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCCHHHHHH
T ss_conf 789998599997999998
This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
>KOG1751 consensus
Back Show alignment and domain information
Probab=99.67 E-value=8.9e-17 Score=117.77 Aligned_cols=82 Identities=34% Similarity=0.553 Sum_probs=68.8
Q ss_pred CCCHHHHH-HHHCCCCHHHHH-HHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCC
Q ss_conf 85257867-600320799888-8648909999888789889999999996874337899851896333112246644322
Q gi|254780259|r 2 INIRFYDT-IISPVIAEKSTL-LAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVR 79 (110)
Q Consensus 2 ~~~~~~~v-i~~P~~TEKs~~-~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~ 79 (110)
T Consensus 69 ~kld~y~~iIk~plTtEsamKk~ednNtlvf~vd~kankhqiKqAVkkLyd~dvakvntli~p----------------- 131 (157)
T KOG1751 69 PKLDHYAIIIKFPLTTESAMKKIEDNNTLVFIVDSKANKHQIKQAVKKLYDTDVAKVNTLIRP----------------- 131 (157)
T ss_pred CCCCCHHHHHCCCCCHHHHHCCHHHCCEEEEEEECCCCHHHHHHHHHHHCCCCHHHHEEEECC-----------------
T ss_conf 752005666507440033223550286579998335674899999999715630341244467-----------------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCC-EECCCCC
Q ss_conf 34544434588138999958997-3133248
Q gi|254780259|r 80 SSRDMYVSRKDVKRAFVTLAKGY-SIDISAG 109 (110)
Q Consensus 80 ~~r~~~~k~~~~KKAiVtL~~G~-~I~~~~g 109 (110)
T Consensus 132 ---------~g~kkAyv~la~dydaldvank 153 (157)
T KOG1751 132 ---------DGEKKAYVRLAPDYDALDVANK 153 (157)
T ss_pred ---------CCCEEEEEECCCCHHHHHHHCC
T ss_conf ---------8754678861883458987302
>KOG4089 consensus
Back Show alignment and domain information
Probab=97.99 E-value=1.4e-05 Score=53.29 Aligned_cols=77 Identities=19% Similarity=0.326 Sum_probs=59.4
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCC-CCEEEEEECCCCC
Q ss_conf 489099998887898899999999968743378998518963331122466443223454443458-8138999958997
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDMYVSRK-DVKRAFVTLAKGY 102 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~~~k~~-~~KKAiVtL~~G~ 102 (110)
T Consensus 36 ~p~~~~FrVp~~m~k~DvR~YL~~iY~l~v~~vrtrl~~Gk~~-------~~~k~r~~~~k~i~kdmd~p~~Yv~~pr~~ 108 (165)
T KOG4089 36 PPKIVKFRVPMSMNKFDVRDYLTHIYDLPVVDVRTRLQHGKDY-------KKTKKRLQSPKRIKKDMDEPVAYVEEPRGS 108 (165)
T ss_pred CCCEEEEECCHHHCCCCHHHHHHHHCCCCEEEEEEEEEECHHH-------HCCEECCCCCCEEECCCCCCEEEECCCCCC
T ss_conf 9851799716465221399999886488233112002204044-------304312456602302445642431378775
Q ss_pred EECCC
Q ss_conf 31332
Q gi|254780259|r 103 SIDIS 107 (110)
Q Consensus 103 ~I~~~ 107 (110)
T Consensus 109 ~~~~P 113 (165)
T KOG4089 109 KFSFP 113 (165)
T ss_pred CCCCC
T ss_conf 34577
Homologous Domains in SCOP and MMDB Database Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity Alignment graph Length
Definition
E-value
Target
110
50S ribosomal protein L23 [Candidatus Liberibacter asia
d2j01x1 93
d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus thermo
4e-21
d2zjrq1 93
d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus ra
7e-21
d2qamt1 93
d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia co
2e-19
d1vqos1 81
d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloa
3e-13
>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus thermophilus [TaxId: 274]} Length = 93
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Thermus thermophilus [TaxId: 274]
Score = 93.6 bits (233), Expect = 4e-21
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 7 YDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVK 66
YD I++PV++EK+ + + F V ++K+EIK+AVE F VKVV VNTL +GK K
Sbjct: 3 YDVILAPVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKK 62
Query: 67 RLSRISAARSRVRSSRDMYVSRKDVKRAFVTLAKGYSIDISAGV 110
RL R R D K+A V +A G I+ G+
Sbjct: 63 RLGRY-------------LGKRPDRKKAIVQVAPGQKIEALEGL 93
>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus radiodurans [TaxId: 1299]} Length = 93
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Deinococcus radiodurans [TaxId: 1299]
Score = 92.8 bits (231), Expect = 7e-21
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 7 YDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVK 66
YD + +PVI+EK+ + F V ++K+EIK A++ F V+V+ ++T+ GK K
Sbjct: 3 YDILQAPVISEKAYSAMERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRK 62
Query: 67 RLSRISAARSRVRSSRDMYVSRKDVKRAFVTLAKGYSIDISAG 109
R+ R R D K+A V LA+G SI+ AG
Sbjct: 63 RVGRF-------------IGQRNDRKKAIVRLAEGQSIEALAG 92
>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli [TaxId: 562]} Length = 93
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Escherichia coli [TaxId: 562]
Score = 87.9 bits (218), Expect = 2e-19
Identities = 37/105 (35%), Positives = 59/105 (56%), Gaps = 14/105 (13%)
Query: 1 MINIRFYDTIISPVIAEKST-LLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59
+ R + +P ++EK++ + N +V V KD++K+EIK+AV+ LF V+V VNTL
Sbjct: 2 IREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTL 61
Query: 60 IRKGKVKRLSRISAARSRVRSSRDMYVSRKDVKRAFVTLAKGYSI 104
+ KGKVKR + R D K+A+VTL +G ++
Sbjct: 62 VVKGKVKRHGQR-------------IGRRSDWKKAYVTLKEGQNL 93
>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 81
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Archaeon Haloarcula marismortui [TaxId: 2238]
Score = 67.4 bits (165), Expect = 3e-13
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 7 YDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65
+D I P + EK+ QN++ F V +SK E+ AVE + V V VNT
Sbjct: 2 WDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE 61
Query: 66 KR 67
K+
Sbjct: 62 KK 63
Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity Alignment graph Length
Definition
Probability
Target 110
50S ribosomal protein L23 [Candidatus Liberibacter asia
d2zjrq1 93
Ribosomal protein L23 {Deinococcus radiodurans [TaxId:
100.0
d2j01x1 93
Ribosomal protein L23 {Thermus thermophilus [TaxId: 274
99.98
d2qamt1 93
Ribosomal protein L23 {Escherichia coli [TaxId: 562]}
99.97
d1vqos1 81
Ribosomal protein L23 {Archaeon Haloarcula marismortui
99.92
>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus radiodurans [TaxId: 1299]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Deinococcus radiodurans [TaxId: 1299]
Probab=100.00 E-value=3.3e-35 Score=221.34 Aligned_cols=92 Identities=38% Similarity=0.554 Sum_probs=86.5
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 57867600320799888864890999988878988999999999687433789985189633311224664432234544
Q gi|254780259|r 5 RFYDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDM 84 (110)
Q Consensus 5 ~~~~vi~~P~~TEKs~~~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~ 84 (110)
.|||+|++|++||||+.+.|+|+|+|.|+++|||+|||+|||++|+|+|.+|||+|.+||.||++++
T Consensus 1 ~~ydvi~~P~iTEKs~~~~e~n~y~F~V~~~atK~~Ik~ave~lf~VkV~~Vnt~~~~gK~kr~~~~------------- 67 (93)
T d2zjrq1 1 SHYDILQAPVISEKAYSAMERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRF------------- 67 (93)
T ss_dssp CCSSSCCEECCTHHHHHHHTTTCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSSC-------------
T ss_pred CCCCEEEECCCCHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCEEECCC-------------
T ss_conf 9633886032088787777799799998087898999999999819875899989817972377994-------------
Q ss_pred CCCCCCCEEEEEECCCCCEECCCCC
Q ss_conf 4345881389999589973133248
Q gi|254780259|r 85 YVSRKDVKRAFVTLAKGYSIDISAG 109 (110)
Q Consensus 85 ~~k~~~~KKAiVtL~~G~~I~~~~g 109 (110)
.|++++||||||||++|++||||+|
T Consensus 68 ~g~~~~~KKAiVtL~~g~~I~~~~g 92 (93)
T d2zjrq1 68 IGQRNDRKKAIVRLAEGQSIEALAG 92 (93)
T ss_dssp CCCCCCBEEEEEECCSSCCCSSTTT
T ss_pred CEECCCCEEEEEECCCCCCCCCCCC
T ss_conf 3403897899999689694031489
>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Thermus thermophilus [TaxId: 274]
Probab=99.98 E-value=3.6e-35 Score=221.10 Aligned_cols=92 Identities=43% Similarity=0.593 Sum_probs=86.5
Q ss_pred HHHHHHHCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 78676003207998888648909999888789889999999996874337899851896333112246644322345444
Q gi|254780259|r 6 FYDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDMY 85 (110)
Q Consensus 6 ~~~vi~~P~~TEKs~~~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~~ 85 (110)
.||+|++|++||||+.+.|+|+|+|.|+++|||+|||+|||++|+|+|.+|||+|++||.||++++ .
T Consensus 2 aydvi~~PiiTEKs~~l~e~n~y~F~V~~~atK~eIK~ave~~f~VkV~~Vnt~~~~gK~kr~~~~-------------~ 68 (93)
T d2j01x1 2 AYDVILAPVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRY-------------L 68 (93)
T ss_dssp CSTTCCEECCSHHHHHHHTSSCCCEECCSSSCCTTCHHHHTTTTTCCCCCBCCCCCCCCCCSSCCC-------------C
T ss_pred CHHEEECCCCCHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEECCCEEEECCC-------------C
T ss_conf 313653252188676667689699998087898999999999809971699989847960576884-------------4
Q ss_pred CCCCCCEEEEEECCCCCEECCCCCC
Q ss_conf 3458813899995899731332489
Q gi|254780259|r 86 VSRKDVKRAFVTLAKGYSIDISAGV 110 (110)
Q Consensus 86 ~k~~~~KKAiVtL~~G~~I~~~~gi 110 (110)
|++++||||||||++|++||||+||
T Consensus 69 g~~~~~KKA~V~L~~g~~I~~~~g~ 93 (93)
T d2j01x1 69 GKRPDRKKAIVQVAPGQKIEALEGL 93 (93)
T ss_dssp SCCCCBCCBCCSTTTCCSSSSTTC-
T ss_pred CCCCCCEEEEEECCCCCEECCCCCC
T ss_conf 2458988999993896980365798
>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=6.8e-33 Score=207.98 Aligned_cols=91 Identities=41% Similarity=0.592 Sum_probs=84.3
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCC
Q ss_conf 985257867600320799888864-8909999888789889999999996874337899851896333112246644322
Q gi|254780259|r 1 MINIRFYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVR 79 (110)
Q Consensus 1 m~~~~~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~ 79 (110)
|+++++||+|++|++||||+.+.| .|+|+|.|+++|||+|||+|||++|+|+|.+|||+|++||.+|+++
T Consensus 2 ~~~~~~~~ii~~PviTEKs~~~~e~~n~ytF~V~~~AtK~eIK~ave~~f~VkV~~Vnt~~~~gK~kr~~~--------- 72 (93)
T d2qamt1 2 IREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQ--------- 72 (93)
T ss_dssp CSCTTTCCCEEEECCCHHHHTHHHHSSCCCEEECSSCCSHHHHHHHHHTTCCCCCCCCCEEECCCEECSTT---------
T ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCEEEECC---------
T ss_conf 76679998884261688889867639989999899899999999999982996229988885794367588---------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 3454443458813899995899731
Q gi|254780259|r 80 SSRDMYVSRKDVKRAFVTLAKGYSI 104 (110)
Q Consensus 80 ~~r~~~~k~~~~KKAiVtL~~G~~I 104 (110)
..|++++||||||||++|++|
T Consensus 73 ----~~g~~~~~KKAiVtL~~g~~I 93 (93)
T d2qamt1 73 ----RIGRRSDWKKAYVTLKEGQNL 93 (93)
T ss_dssp ----CCEECCCEEECCCCCSSCCCC
T ss_pred ----CCCCCCCCEEEEEECCCCCCC
T ss_conf ----440248978999993897869
>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L23p
domain: Ribosomal protein L23
species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=99.92 E-value=5.5e-26 Score=168.19 Aligned_cols=79 Identities=30% Similarity=0.393 Sum_probs=71.7
Q ss_pred HHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 7867600320799888864-890999988878988999999999687433789985189633311224664432234544
Q gi|254780259|r 6 FYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDM 84 (110)
Q Consensus 6 ~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~ 84 (110)
.||+|++|++||||+.+.| +|+|+|.|+++|||+|||+|||.+|+|+|.+|||++.+++
T Consensus 1 ~y~iI~~P~iTEKs~~~~e~~n~y~F~V~~~A~K~~IK~AVe~lf~VkV~~Vnt~~~~~~-------------------- 60 (81)
T d1vqos1 1 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDG-------------------- 60 (81)
T ss_dssp CCCSEEEECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTS--------------------
T ss_pred CCCEEECCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCC--------------------
T ss_conf 963110031079889988868779999768589899999999984993018997673899--------------------
Q ss_pred CCCCCCCEEEEEECCCCCE-ECCCCCC
Q ss_conf 4345881389999589973-1332489
Q gi|254780259|r 85 YVSRKDVKRAFVTLAKGYS-IDISAGV 110 (110)
Q Consensus 85 ~~k~~~~KKAiVtL~~G~~-I~~~~gi 110 (110)
+|||||+|++|++ +|+++.|
T Consensus 61 ------~KkA~V~L~~~~~a~dia~ki 81 (81)
T d1vqos1 61 ------EKKAVVRLSEDDDAQEVASRI 81 (81)
T ss_dssp ------SEEEEEEECTTSCHHHHHTTC
T ss_pred ------CEEEEEEECCCCCHHHHHHCC
T ss_conf ------578999948999689997359
Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity Alignment graph Length
Definition
E-value
Target
110
50S ribosomal protein L23 [Candidatus Liberibacter
3fin_X_ 93
(X:) 50S ribosomal protein L23; ribonucleoprotein,
7e-22
2zjr_Q_ 95
(Q:) 50S ribosomal protein L23; ribosome, large ri
1e-21
3i1n_T_ 100
(T:) 50S ribosomal protein L23; ribosome structure
5e-21
1vq8_S_ 85
(S:) 50S ribosomal protein L23P; ribosome 50S, pro
4e-14
2go5_4_ 152
(4:) Ribosomal protein L23; SR, SRP, ribosome, tra
7e-14
2zkr_s_ 156
(s:) 60S ribosomal protein L23A; protein-RNA compl
2e-12
3bbo_V_ 198
(V:) Ribosomal protein L23; large ribosomal subuni
2e-11
2wwb_K_ 142
(K:) 60S ribosomal protein L25; ribosome, protein
4e-11
>3fin_X (X:) 50S ribosomal protein L23; ribonucleoprotein, metal-binding, RNA- binding, rRNA-binding, zinc, tRNA-binding, repressor; 6.40A {Thermus thermophilus} PDB: 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X 2wdn_X 2wh2_X 2wh4_X 3d5b_X 3d5d_X ...Length = 93
Back Hide alignment and structure
Score = 97.0 bits (242), Expect = 7e-22
Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 13/104 (12%)
Query: 7 YDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVK 66
YD I++PV++EK+ + + F V ++K+EIK+AVE F VKVV VNTL +GK K
Sbjct: 3 YDVILAPVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKK 62
Query: 67 RLSRISAARSRVRSSRDMYVSRKDVKRAFVTLAKGYSIDISAGV 110
RL R R D K+A V +A G I+ G+
Sbjct: 63 RLGRY-------------LGKRPDRKKAIVQVAPGQKIEALEGL 93
>2zjr_Q (Q:) 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans}Length = 95
Back Show alignment and structure
Score = 96.3 bits (240), Expect = 1e-21
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 13/106 (12%)
Query: 4 IRFYDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKG 63
+ YD + +PVI+EK+ + F V ++K+EIK A++ F V+V+ ++T+ G
Sbjct: 1 MSHYDILQAPVISEKAYSAMERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPG 60
Query: 64 KVKRLSRISAARSRVRSSRDMYVSRKDVKRAFVTLAKGYSIDISAG 109
K KR+ R R D K+A V LA+G SI+ AG
Sbjct: 61 KRKRVGRF-------------IGQRNDRKKAIVRLAEGQSIEALAG 93
>3i1n_T (T:) 50S ribosomal protein L23; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_R 1p86_R 1vs8_T 2aw4_T 2awb_T 1vs6_T 2i2v_T 2i2t_T* 2qao_T* 2qba_T* 2qbc_T* 2qbe_T 2qbg_T 2qbi_T* 2qbk_T* 2qov_T 2qox_T 2qoz_T* 2qp1_T* 2rdo_T ...Length = 100
Back Show alignment and structure
Score = 94.0 bits (234), Expect = 5e-21
Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 14/110 (12%)
Query: 1 MINIRFYDTIISPVIAEKSTLLAGQ-NQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59
+ R + +P ++EK++ + N +V V KD++K+EIK+AV+ LF V+V VNTL
Sbjct: 2 IREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTL 61
Query: 60 IRKGKVKRLSRISAARSRVRSSRDMYVSRKDVKRAFVTLAKGYSIDISAG 109
+ KGKVKR + R D K+A+VTL +G ++D G
Sbjct: 62 VVKGKVKRHGQR-------------IGRRSDWKKAYVTLKEGQNLDFVGG 98
>1vq8_S (S:) 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui}Length = 85
Back Show alignment and structure
Score = 71.6 bits (176), Expect = 4e-14
Identities = 24/100 (24%), Positives = 35/100 (35%), Gaps = 27/100 (27%)
Query: 7 YDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65
+D I P + EK+ QN++ F V +SK E+ AVE + V V VNT
Sbjct: 3 WDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDG- 61
Query: 66 KRLSRISAARSRVRSSRDMYVSRKDVKRAFVTLAKGYSID 105
K+A V L++
Sbjct: 62 -------------------------EKKAVVRLSEDDDAQ 76
>2go5_4 (4:) Ribosomal protein L23; SR, SRP, ribosome, translation/RNA complex; 7.40A {Triticum SP} PDB: 2j37_4Length = 152
Back Show alignment and structure
Score = 70.6 bits (173), Expect = 7e-14
Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 18/104 (17%)
Query: 1 MINIRFYDTIISPVIAEKSTLLAGQN-QVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59
+ Y + P+ E + N +VF V + K +IK+AV+ ++ ++ VNTL
Sbjct: 64 RNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTL 123
Query: 60 IRKGKVKRLSRISAARSRVRSSRDMYVS-RKDVKRAFVTLAKGY 102
IR K+ YV D V G
Sbjct: 124 IRPDGKKK----------------AYVKLTPDYDALDVANKIGI 151
>2zkr_s (s:) 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}Length = 156
Back Show alignment and structure
Score = 65.7 bits (160), Expect = 2e-12
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 28/112 (25%)
Query: 1 MINIRFYDTIISPVIAEKSTLLAGQN-QVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59
+ Y I P+ E + N +VF V ++K +IK AV+ L+ + V VNTL
Sbjct: 68 RNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTL 127
Query: 60 IRKGKVKRLSRISAARSRVRSSRDMYVSRKDVKRAFVTLAKGYS-IDISAGV 110
IR K+A+V LA Y +D++ +
Sbjct: 128 IRPDG--------------------------EKKAYVRLAPDYDALDVANKI 153
>3bbo_V (V:) Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}Length = 198
Back Show alignment and structure
Score = 62.7 bits (152), Expect = 2e-11
Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 27/106 (25%)
Query: 4 IRFYDTIISPVIAEKST-LLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRK 62
+ Y + SP+I E + +A +N ++F V + K I+ A+ F VKV VNTLIR
Sbjct: 109 LDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRP 168
Query: 63 GKVKRLSRISAARSRVRSSRDMYVSRKDVKRAFVTLAKGYSIDISA 108
K+A++ L K Y+ A
Sbjct: 169 DG--------------------------TKKAYIMLNKEYNASELA 188
>2wwb_K (K:) 60S ribosomal protein L25; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_K 2ww9_K 1s1i_TLength = 142
Back Show alignment and structure
Score = 61.7 bits (150), Expect = 4e-11
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 28/112 (25%)
Query: 1 MINIRFYDTIISPVIAEKST-LLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59
+ Y I P+ +E + + N +VF V ++K +IK AV+ L+ V V+ VNTL
Sbjct: 54 YNRLDSYKVIEQPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTL 113
Query: 60 IRKGKVKRLSRISAARSRVRSSRDMYVSRKDVKRAFVTLAKGYS-IDISAGV 110
+R K+A+V L Y +DI+ +
Sbjct: 114 VRPNG--------------------------TKKAYVRLTADYDALDIANRI 139
Homologous Domains in MMDB70 Database Detected by HHsearch
Original result of HHsearch against MMDB70 database
Identity Alignment graph Length
Definition
Probability
Target 110
50S ribosomal protein L23 [Candidatus Liberibacter asia
2zjr_Q_ 95
50S ribosomal protein L23; ribosome, large ribosom
100.0
3i1n_T_ 100
50S ribosomal protein L23; ribosome structure, pro
100.0
3fin_X_ 93
50S ribosomal protein L23; ribonucleoprotein, meta
99.97
2wwb_K_ 142
60S ribosomal protein L25; ribosome, protein EXIT
99.95
2zkr_s_ 156
60S ribosomal protein L23A; protein-RNA complex, 6
99.94
1vq8_S_ 85
50S ribosomal protein L23P; ribosome 50S, protein-
99.93
3bbo_V_ 198
Ribosomal protein L23; large ribosomal subunit, sp
99.92
2go5_4_ 152
Ribosomal protein L23; SR, SRP, ribosome, translat
99.92
>2zjr_Q (Q:) 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans}
Back Hide alignment and structure
Probab=100.00 E-value=1.3e-34 Score=220.24 Aligned_cols=93 Identities=38% Similarity=0.553 Sum_probs=88.5
Q ss_pred CHHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 25786760032079988886489099998887898899999999968743378998518963331122466443223454
Q gi|254780259|r 4 IRFYDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRD 83 (110)
Q Consensus 4 ~~~~~vi~~P~~TEKs~~~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~ 83 (110)
|++||+|++|++||||+.+.|+|+|+|.|+++|||+|||+|||.+|+|+|.+|||+|++||.||++++.
T Consensus 1 m~~~~vI~~p~iTEKs~~l~e~n~~~F~V~~~anK~eIK~ave~~f~VkV~~VnT~~~~gK~kR~~~~~----------- 69 (95)
T 2zjr_Q 1 MSHYDILQAPVISEKAYSAMERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRFI----------- 69 (95)
T ss_dssp -CCSSSCCEECCTHHHHHHHTTTCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSSCC-----------
T ss_pred CCCCCEEEECCCCHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEECCCEEEECCCC-----------
T ss_conf 970018750410887887776997999981888989999999998399637998898279615768844-----------
Q ss_pred CCCCCCCCEEEEEECCCCCEECCCCC
Q ss_conf 44345881389999589973133248
Q gi|254780259|r 84 MYVSRKDVKRAFVTLAKGYSIDISAG 109 (110)
Q Consensus 84 ~~~k~~~~KKAiVtL~~G~~I~~~~g 109 (110)
|++++||||||||++|++||||+|
T Consensus 70 --g~~~~~KKA~VtL~~g~~i~~~~~ 93 (95)
T 2zjr_Q 70 --GQRNDRKKAIVRLAEGQSIEALAG 93 (95)
T ss_dssp --CCCCCBEEEEEECCSSCCCSSTTT
T ss_pred --CCCCCCEEEEEECCCCCEECCCCC
T ss_conf --013897999999589796401378
>3i1n_T (T:) 50S ribosomal protein L23; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1p85_R 1p86_R 1vs8_T 2aw4_T 2awb_T 1vs6_T 2i2v_T 2i2t_T* 2qao_T* 2qba_T* 2qbc_T* 2qbe_T 2qbg_T 2qbi_T* 2qbk_T* 2qov_T 2qox_T 2qoz_T* 2qp1_T* 2rdo_T ...
Back Show alignment and structure
Probab=100.00 E-value=9.9e-35 Score=220.82 Aligned_cols=97 Identities=40% Similarity=0.596 Sum_probs=90.9
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCC
Q ss_conf 985257867600320799888864-8909999888789889999999996874337899851896333112246644322
Q gi|254780259|r 1 MINIRFYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVR 79 (110)
Q Consensus 1 m~~~~~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~ 79 (110)
|.+|++||+|++|++||||+.+.| .|+|+|.|+++|||+|||+|||++|+|+|.+|||+|.+||.||+++
T Consensus 2 m~~~~~~~vi~~pv~TEKs~~~~e~~n~ytF~V~~~atK~eIK~aiE~~f~VkV~~VnT~~~~~k~kR~~~--------- 72 (100)
T 3i1n_T 2 IREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQ--------- 72 (100)
T ss_dssp CSCGGGCCCCCEECCCHHHHHHTTTTSCCCEECCSSCCSHHHHHHHHHTTCCCCCCCCCEEECCCBCCSSS---------
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCEEEECC---------
T ss_conf 86679998775041588889878659889999589899999999999982996059998884784367588---------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCEECCCCCC
Q ss_conf 3454443458813899995899731332489
Q gi|254780259|r 80 SSRDMYVSRKDVKRAFVTLAKGYSIDISAGV 110 (110)
Q Consensus 80 ~~r~~~~k~~~~KKAiVtL~~G~~I~~~~gi 110 (110)
..|++++||||||||++|++||||+|.
T Consensus 73 ----~~g~~~~~KKAiVtL~~g~~i~~~~~~ 99 (100)
T 3i1n_T 73 ----RIGRRSDWKKAYVTLKEGQNLDFVGGA 99 (100)
T ss_dssp ----SCCBCCCEEECCCCCSSSCCC------
T ss_pred ----CCCCCCCCEEEEEECCCCCEEEECCCC
T ss_conf ----441348988999995899926542568
>3fin_X (X:) 50S ribosomal protein L23; ribonucleoprotein, metal-binding, RNA- binding, rRNA-binding, zinc, tRNA-binding, repressor; 6.40A {Thermus thermophilus} PDB: 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X 2wdn_X 2wh2_X 2wh4_X 3d5b_X 3d5d_X ...
Back Show alignment and structure
Probab=99.97 E-value=1.7e-34 Score=219.53 Aligned_cols=93 Identities=43% Similarity=0.588 Sum_probs=88.1
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 57867600320799888864890999988878988999999999687433789985189633311224664432234544
Q gi|254780259|r 5 RFYDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDM 84 (110)
Q Consensus 5 ~~~~vi~~P~~TEKs~~~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~ 84 (110)
++||+|++|++||||++++|+|+|+|.|+++|||+|||+|||.+|+|+|.+|||+|.+||.||+++ .
T Consensus 1 n~~dii~~p~iTEKs~~l~e~n~y~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gK~kr~~~-------------~ 67 (93)
T 3fin_X 1 TAYDVILAPVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGR-------------Y 67 (93)
T ss_dssp CCSTTCCEECCSHHHHHHHTSSCCCEECCSSSCCTTCHHHHTTTTTCCCCCBCCCCCCCCCCSSCC-------------C
T ss_pred CCHHEEECCCCCHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEECCCEEEECC-------------C
T ss_conf 921364325228868666768969999808889899999999980997059998984796057788-------------3
Q ss_pred CCCCCCCEEEEEECCCCCEECCCCCC
Q ss_conf 43458813899995899731332489
Q gi|254780259|r 85 YVSRKDVKRAFVTLAKGYSIDISAGV 110 (110)
Q Consensus 85 ~~k~~~~KKAiVtL~~G~~I~~~~gi 110 (110)
.|++++||||||||++|++||||+||
T Consensus 68 ~g~~~~~KKA~VtL~~g~~I~~~~~i 93 (93)
T 3fin_X 68 LGKRPDRKKAIVQVAPGQKIEALEGL 93 (93)
T ss_dssp CSCCCCBCCBCCSTTTCCSSSSTTC-
T ss_pred CCCCCCCEEEEEECCCCCEECCCCCC
T ss_conf 42458988999993896980264798
>2wwb_K (K:) 60S ribosomal protein L25; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_K 2ww9_K 1s1i_T
Back Show alignment and structure
Probab=99.95 E-value=6.7e-28 Score=181.47 Aligned_cols=84 Identities=33% Similarity=0.550 Sum_probs=78.0
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHHC-CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCC
Q ss_conf 9852578676003207998888648-909999888789889999999996874337899851896333112246644322
Q gi|254780259|r 1 MINIRFYDTIISPVIAEKSTLLAGQ-NQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVR 79 (110)
Q Consensus 1 m~~~~~~~vi~~P~~TEKs~~~~e~-n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~ 79 (110)
|+.|++|++|++|++||||+.+.|+ |+|+|.||++|||+|||+|||++|+|+|.+|||++.++
T Consensus 54 ~~~ld~~~iI~~Pl~TEka~~~~E~~N~lvF~Vd~~AnK~qIK~AVe~ly~VkV~kVNTli~~~---------------- 117 (142)
T 2wwb_K 54 YNRLDSYKVIEQPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN---------------- 117 (142)
T ss_dssp ---CCCCCSEEEECCSHHHHHHHHHHSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEECCTT----------------
T ss_pred CCCCCHHHCCCCCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEEEECCC----------------
T ss_conf 6667743321037542888999985898999978989989999999998198342798767389----------------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCE-ECCCCCC
Q ss_conf 345444345881389999589973-1332489
Q gi|254780259|r 80 SSRDMYVSRKDVKRAFVTLAKGYS-IDISAGV 110 (110)
Q Consensus 80 ~~r~~~~k~~~~KKAiVtL~~G~~-I~~~~gi 110 (110)
+||||||+|++|++ ||++++|
T Consensus 118 ----------g~KKA~V~L~~d~~aldva~ki 139 (142)
T 2wwb_K 118 ----------GTKKAYVRLTADYDALDIANRI 139 (142)
T ss_dssp ----------SSEEEEEEECSTTCSSSSSSCC
T ss_pred ----------CCEEEEEEECCCCCHHHHHHCC
T ss_conf ----------9388999979998389997512
>2zkr_s (s:) 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Back Show alignment and structure
Probab=99.94 E-value=9.5e-28 Score=180.61 Aligned_cols=84 Identities=33% Similarity=0.523 Sum_probs=77.2
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCC
Q ss_conf 985257867600320799888864-8909999888789889999999996874337899851896333112246644322
Q gi|254780259|r 1 MINIRFYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVR 79 (110)
Q Consensus 1 m~~~~~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~ 79 (110)
|+.|++||+|++|++||||+.+.| +|+|+|.||.+|||+||++|||++|+|+|.+|||++.++
T Consensus 68 ~~~~d~y~iIk~Pl~TEka~~~~E~nntlvFiVd~~AnK~qIK~AVe~lf~VkV~kVNTl~~~~---------------- 131 (156)
T 2zkr_s 68 RNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD---------------- 131 (156)
T ss_dssp --------CEEEECCSHHHHHHHHHHCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS----------------
T ss_pred CCCCCHHHEEECCCCHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCC----------------
T ss_conf 6778864555526441546998742562799847878989999999998198102788757489----------------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCC-EECCCCCC
Q ss_conf 34544434588138999958997-31332489
Q gi|254780259|r 80 SSRDMYVSRKDVKRAFVTLAKGY-SIDISAGV 110 (110)
Q Consensus 80 ~~r~~~~k~~~~KKAiVtL~~G~-~I~~~~gi 110 (110)
+||||||+|++|+ .||++++|
T Consensus 132 ----------g~KKA~V~L~~~~daldvankI 153 (156)
T 2zkr_s 132 ----------GEKKAYVRLAPDYDALDVANKI 153 (156)
T ss_dssp ----------SCEEEEEEECTTSCHHHHHHHC
T ss_pred ----------CCEEEEEEECCCCCHHHHHHCC
T ss_conf ----------9368999968997289997502
>1vq8_S (S:) 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui}
Back Show alignment and structure
Probab=99.93 E-value=1.3e-26 Score=174.11 Aligned_cols=79 Identities=30% Similarity=0.402 Sum_probs=72.0
Q ss_pred HHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 7867600320799888864-890999988878988999999999687433789985189633311224664432234544
Q gi|254780259|r 6 FYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDM 84 (110)
Q Consensus 6 ~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~ 84 (110)
+||+|++|++||||+.+.| +|+|+|.|+++|||+|||+|||.+|+|+|.+|||+|.+|
T Consensus 2 ~~~ii~~P~~TEKs~~l~e~~n~y~F~V~~~atK~~IK~ave~lf~VkV~~Vnt~~~~~--------------------- 60 (85)
T 1vq8_S 2 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD--------------------- 60 (85)
T ss_dssp CCCSEEEECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT---------------------
T ss_pred CCCEECCCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCC---------------------
T ss_conf 70010135007988998986877999976868989999999998399300898767489---------------------
Q ss_pred CCCCCCCEEEEEECCCCCEE-CCCCCC
Q ss_conf 43458813899995899731-332489
Q gi|254780259|r 85 YVSRKDVKRAFVTLAKGYSI-DISAGV 110 (110)
Q Consensus 85 ~~k~~~~KKAiVtL~~G~~I-~~~~gi 110 (110)
+||||||+|++|++| |+++++
T Consensus 61 -----k~KKA~V~L~~~~~~~~~a~~i 82 (85)
T 1vq8_S 61 -----GEKKAVVRLSEDDDAQEVASRI 82 (85)
T ss_dssp -----SSEEEEEEECTTSCHHHHHTTC
T ss_pred -----CCEEEEEEECCCCCHHHHHHHC
T ss_conf -----9578999918999689999731
>3bbo_V (V:) Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Back Show alignment and structure
Probab=99.92 E-value=1.1e-26 Score=174.49 Aligned_cols=80 Identities=33% Similarity=0.502 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHCCCCHHHHHHHHC-CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCC
Q ss_conf 852578676003207998888648-9099998887898899999999968743378998518963331122466443223
Q gi|254780259|r 2 INIRFYDTIISPVIAEKSTLLAGQ-NQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRS 80 (110)
Q Consensus 2 ~~~~~~~vi~~P~~TEKs~~~~e~-n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~ 80 (110)
+.|++|+||++|++||||+.+.|+ |+|+|.||.+|||+|||+|||++|+|+|.+|||+++++
T Consensus 107 ~~ld~~~IIk~Pl~TEKa~k~iEdnNtlvFiVd~kANK~qIK~AVekLydVkV~kVNTli~p~----------------- 169 (198)
T 3bbo_V 107 RILDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPD----------------- 169 (198)
T ss_dssp ---CCCCCBCCCCCCHHHHHHHHTSCEECCEECTTCCHHHHHHTTTTTSCCCEEECCCEEETT-----------------
T ss_pred HHCCHHHEEECCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCC-----------------
T ss_conf 007875640015217888998987786999989999989999999998298013798657389-----------------
Q ss_pred CCCCCCCCCCCEEEEEECCCCCEECCC
Q ss_conf 454443458813899995899731332
Q gi|254780259|r 81 SRDMYVSRKDVKRAFVTLAKGYSIDIS 107 (110)
Q Consensus 81 ~r~~~~k~~~~KKAiVtL~~G~~I~~~ 107 (110)
+||||||+|++|++++++
T Consensus 170 ---------g~KKA~V~La~d~~aldv 187 (198)
T 3bbo_V 170 ---------GTKKAYIMLNKEYNASEL 187 (198)
T ss_dssp ---------TEEECCEEECTTTCTTTH
T ss_pred ---------CCEEEEEEECCCCCHHHH
T ss_conf ---------927899996899847888
>2go5_4 (4:) Ribosomal protein L23; SR, SRP, ribosome, translation/RNA complex; 7.40A {Triticum SP} PDB: 2j37_4
Back Show alignment and structure
Probab=99.92 E-value=2.7e-26 Score=172.28 Aligned_cols=87 Identities=25% Similarity=0.307 Sum_probs=79.3
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCC
Q ss_conf 985257867600320799888864-8909999888789889999999996874337899851896333112246644322
Q gi|254780259|r 1 MINIRFYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVR 79 (110)
Q Consensus 1 m~~~~~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~ 79 (110)
|+.|++|++|++|++||||+.+.| +|+|+|.||++|||+|||+|||++|+|+|.+|||+|.+++.+|.
T Consensus 64 ~~~ld~~~iIk~Pl~TEKa~~~~E~nnt~vF~Vd~kAnK~qIK~AVekly~VkV~kVNTl~~~~k~Kka----------- 132 (152)
T 2go5_4 64 RNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKA----------- 132 (152)
T ss_dssp -----CCCSEEEECCSHHHHHHHHHSCEEEEEECTTCCSHHHHHHHHHHHCCCEEEEEEECCSSSSEEE-----------
T ss_pred CCCCCHHHHHEECCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCEEE-----------
T ss_conf 455896561000643087899873075079982686886999999999809800378866748995789-----------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCC
Q ss_conf 34544434588138999958997
Q gi|254780259|r 80 SSRDMYVSRKDVKRAFVTLAKGY 102 (110)
Q Consensus 80 ~~r~~~~k~~~~KKAiVtL~~G~ 102 (110)
..+.+++|++|+|+|+.|-
T Consensus 133 ----~v~l~~d~kk~~ValkiG~ 151 (152)
T 2go5_4 133 ----YVKLTPDYDALDVANKIGI 151 (152)
T ss_dssp ----EEEECTTTCSHHHHHTC--
T ss_pred ----EEECCCCCCHHHHHHHCCC
T ss_conf ----9984899828999850344