HHsearch alignment of GI: 254780259 and MMDB domain: 3fin_X_
>3fin_X (X:) 50S ribosomal protein L23; ribonucleoprotein, metal-binding, RNA- binding, rRNA-binding, zinc, tRNA-binding, repressor; 6.40A {Thermus thermophilus} PDB: 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X 2wdn_X 2wh2_X 2wh4_X 3d5b_X 3d5d_X ...
Probab=99.97 E-value=1.7e-34 Score=219.53 Aligned_cols=93 Identities=43% Similarity=0.588 Sum_probs=88.1
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 57867600320799888864890999988878988999999999687433789985189633311224664432234544
Q gi|254780259|r 5 RFYDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDM 84 (110)
Q Consensus 5 ~~~~vi~~P~~TEKs~~~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~ 84 (110)
++||+|++|++||||++++|+|+|+|.|+++|||+|||+|||.+|+|+|.+|||+|.+||.||+++ .
T Consensus 1 n~~dii~~p~iTEKs~~l~e~n~y~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gK~kr~~~-------------~ 67 (93)
T 3fin_X 1 TAYDVILAPVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGR-------------Y 67 (93)
T ss_dssp CCSTTCCEECCSHHHHHHHTSSCCCEECCSSSCCTTCHHHHTTTTTCCCCCBCCCCCCCCCCSSCC-------------C
T ss_pred CCHHEEECCCCCHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEECCCEEEECC-------------C
T ss_conf 921364325228868666768969999808889899999999980997059998984796057788-------------3
Q ss_pred CCCCCCCEEEEEECCCCCEECCCCCC
Q ss_conf 43458813899995899731332489
Q gi|254780259|r 85 YVSRKDVKRAFVTLAKGYSIDISAGV 110 (110)
Q Consensus 85 ~~k~~~~KKAiVtL~~G~~I~~~~gi 110 (110)
.|++++||||||||++|++||||+||
T Consensus 68 ~g~~~~~KKA~VtL~~g~~I~~~~~i 93 (93)
T 3fin_X 68 LGKRPDRKKAIVQVAPGQKIEALEGL 93 (93)
T ss_dssp CSCCCCBCCBCCSTTTCCSSSSTTC-
T ss_pred CCCCCCCEEEEEECCCCCEECCCCCC
T ss_conf 42458988999993896980264798