HHsearch results for GI: 254780259 and protein with PDBid: 1vq8_S
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=99.91 E-value=5.1e-25 Score=163.98 Aligned_cols=79 Identities=30% Similarity=0.398 Sum_probs=70.4
Q ss_pred HHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 7867600320799888864-890999988878988999999999687433789985189633311224664432234544
Q gi|254780259|r 6 FYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDM 84 (110)
Q Consensus 6 ~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~ 84 (110)
.||+|++|++||||+.+.| +|+|+|.|+++|||.|||+|||++|+|+|.+|||+|.++
T Consensus 2 ~y~iI~~P~iTEKs~~~~e~~N~y~F~V~~~a~K~eIK~Ave~~f~VkV~~Vnt~~~~~--------------------- 60 (85)
T 1vq8_S 2 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD--------------------- 60 (85)
T ss_dssp CCCSEEEECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT---------------------
T ss_pred CCCEEECCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCEECEEEEEECCC---------------------
T ss_conf 72564044308988998886888999985899989999999998098325798658699---------------------
Q ss_pred CCCCCCCEEEEEECCCCCE-ECCCCCC
Q ss_conf 4345881389999589973-1332489
Q gi|254780259|r 85 YVSRKDVKRAFVTLAKGYS-IDISAGV 110 (110)
Q Consensus 85 ~~k~~~~KKAiVtL~~G~~-I~~~~gi 110 (110)
++|||||+|++|++ +|+++.|
T Consensus 61 -----~~KKA~V~L~~~~~a~dva~kl 82 (85)
T 1vq8_S 61 -----GEKKAVVRLSEDDDAQEVASRI 82 (85)
T ss_dssp -----SSEEEEEEECTTSCHHHHHTTC
T ss_pred -----CCEEEEEEECCCCCHHHHHHHC
T ss_conf -----9478999948999689998731