HHsearch results for GI: 254780259 and protein with PDBid: 3fin_X
>3fin_X 50S ribosomal protein L23; ribonucleoprotein, metal-binding, RNA- binding, rRNA-binding, zinc, tRNA-binding, repressor; 6.40A {Thermus thermophilus} PDB: 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X 2wdn_X 2wh2_X 2wh4_X 2wrj_X 2wrl_X ...
Probab=99.98 E-value=6.2e-35 Score=221.11 Aligned_cols=92 Identities=43% Similarity=0.593 Sum_probs=86.6
Q ss_pred HHHHHHHCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 78676003207998888648909999888789889999999996874337899851896333112246644322345444
Q gi|254780259|r 6 FYDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDMY 85 (110)
Q Consensus 6 ~~~vi~~P~~TEKs~~~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~~ 85 (110)
.||+|++|++||||+.++|+|+|+|.|+++|||+|||+|||.+|+|+|.+|||+|++||.||+|++ .
T Consensus 2 ~ydii~~Pv~TEKs~~~~e~n~y~F~V~~~atK~eIK~ave~~f~VkV~~Vnt~~~~gK~kr~~~~-------------~ 68 (93)
T 3fin_X 2 AYDVILAPVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRY-------------L 68 (93)
T ss_dssp CSTTCCEECCSHHHHHHHTSSCCCEECCSSSCCTTCHHHHTTTTTCCCCCBCCCCCCCCCCSSCCC-------------C
T ss_pred CHHEEECCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCEEEECCC-------------C
T ss_conf 312653361188686556689899997697999999999999849960599988848962576882-------------4
Q ss_pred CCCCCCEEEEEECCCCCEECCCCCC
Q ss_conf 3458813899995899731332489
Q gi|254780259|r 86 VSRKDVKRAFVTLAKGYSIDISAGV 110 (110)
Q Consensus 86 ~k~~~~KKAiVtL~~G~~I~~~~gi 110 (110)
|++++||||||||++|++|||||||
T Consensus 69 g~~~~~KKAiVtL~~g~~I~~~~g~ 93 (93)
T 3fin_X 69 GKRPDRKKAIVQVAPGQKIEALEGL 93 (93)
T ss_dssp SCCCCBCCBCCSTTTCCSSSSTTC-
T ss_pred CCCCCCEEEEEECCCCCEECCCCCC
T ss_conf 2458978999993895981365798