Query gi|254780259|ref|YP_003064672.1| 50S ribosomal protein L23 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 110
No_of_seqs 117 out of 1550
Neff 5.4
Searched_HMMs 23785
Date Tue May 24 07:51:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780259.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjr_Q 50S ribosomal protein L 100.0 6.7E-36 2.8E-40 226.7 7.6 93 4-109 1-93 (95)
2 3fin_X 50S ribosomal protein L 100.0 6.2E-35 2.6E-39 221.1 -1.4 92 6-110 2-93 (93)
3 3ofq_T 50S ribosomal protein L 100.0 2.3E-32 9.7E-37 206.3 -6.3 91 1-104 2-93 (93)
4 2wwb_K 60S ribosomal protein L 99.9 2.8E-27 1.2E-31 177.0 7.6 84 1-110 54-139 (142)
5 2zkr_s 60S ribosomal protein L 99.9 4.7E-27 2E-31 175.8 7.3 83 1-109 68-152 (156)
6 2go5_4 Ribosomal protein L23; 99.9 1.4E-26 5.9E-31 173.0 6.8 84 1-110 64-149 (152)
7 3bbo_V Ribosomal protein L23; 99.9 2.4E-27 1E-31 177.4 1.4 82 2-109 107-196 (198)
8 1vq8_S 50S ribosomal protein L 99.9 5.1E-25 2.2E-29 164.0 8.1 79 6-110 2-82 (85)
9 2bwf_A Ubiquitin-like protein 59.1 10 0.00043 18.2 4.2 42 25-67 13-54 (77)
10 3a9j_A Ubiquitin; protein comp 51.3 14 0.00058 17.5 4.1 40 24-64 9-48 (76)
11 1j8c_A Ubiquitin-like protein 50.1 14 0.00061 17.4 5.0 41 25-66 41-81 (125)
12 3n3k_B Ubiquitin; hydrolase, p 49.3 15 0.00063 17.3 4.1 40 24-64 12-51 (85)
13 1wx7_A Ubiquilin 3; ubiquitin- 45.0 17 0.00073 16.9 4.3 40 25-65 26-65 (106)
14 2dzm_A FAS-associated factor 1 44.4 17 0.00072 16.9 3.3 43 24-66 17-59 (100)
15 2klc_A Ubiquilin-1; ubiquitin- 43.8 18 0.00077 16.8 5.0 41 25-66 34-74 (101)
16 1v86_A DNA segment, CHR 7, way 41.5 20 0.00083 16.6 3.9 39 24-63 25-63 (95)
17 3mtn_B UBA80, ubcep1, ubiquiti 39.9 21 0.00088 16.4 4.1 42 24-66 12-53 (85)
18 1sif_A Ubiquitin; hydrophobic 39.4 21 0.0009 16.4 3.7 41 24-65 18-58 (88)
19 1wx8_A Riken cDNA 4931431F19; 38.4 22 0.00093 16.3 3.7 39 25-64 26-64 (96)
20 2kan_A Uncharacterized protein 37.1 23 0.00098 16.2 4.1 39 25-64 24-62 (94)
21 3m62_B UV excision repair prot 36.7 19 0.00079 16.7 2.5 44 23-67 9-52 (106)
22 2hj8_A Interferon-induced 17 k 36.5 24 0.001 16.1 4.1 41 24-65 13-53 (88)
23 3dbh_I NEDD8; cell cycle, acti 35.7 25 0.001 16.0 3.5 40 24-64 21-60 (88)
24 2dgv_A HnRNP M, heterogeneous 33.8 26 0.0011 15.9 5.0 39 26-66 10-48 (92)
25 1yqb_A Ubiquilin 3; structural 33.3 27 0.0011 15.8 4.3 40 25-65 31-70 (100)
26 1rk8_A CG8781-PA, CG8781-PA pr 31.3 29 0.0012 15.6 5.1 32 27-60 75-106 (165)
27 1v2y_A 3300001G02RIK protein; 30.3 27 0.0011 15.8 2.5 34 24-57 16-49 (105)
28 2g1d_A 30S ribosomal protein S 30.2 6.6 0.00028 19.3 -0.7 45 14-58 5-53 (98)
29 1yx5_B Ubiquitin; proteasome, 29.8 31 0.0013 15.5 3.9 43 23-66 8-50 (98)
30 1oqy_A HHR23A, UV excision rep 29.8 31 0.0013 15.5 3.7 45 23-67 15-61 (368)
31 3k9o_B Ubiquitin, UBB+1; E2-25 29.4 31 0.0013 15.4 4.1 42 23-65 9-50 (96)
32 2kk8_A Uncharacterized protein 29.2 32 0.0013 15.4 4.5 41 23-64 18-58 (84)
33 1v5o_A 1700011N24RIK protein; 28.8 32 0.0014 15.4 3.6 39 25-64 21-59 (102)
34 2kd0_A LRR repeats and ubiquit 27.2 35 0.0015 15.2 3.3 41 25-66 21-61 (85)
35 2d9p_A Polyadenylate-binding p 26.9 35 0.0015 15.2 4.7 42 24-67 15-56 (103)
36 2ojr_A Ubiquitin; lanthide-bin 26.3 36 0.0015 15.1 4.2 40 24-64 44-83 (111)
37 1wjn_A Tubulin-folding protein 25.8 26 0.0011 15.9 1.7 37 23-59 20-56 (97)
38 2v94_A RPS24, 30S ribosomal pr 25.2 23 0.00098 16.2 1.4 45 16-60 15-63 (107)
39 1xn9_A 30S ribosomal protein S 24.9 14 0.0006 17.4 0.3 46 14-59 5-53 (101)
40 1ywx_A 30S ribosomal protein S 24.8 16 0.00069 17.0 0.6 45 15-59 6-53 (102)
41 1ndd_A NEDD8, protein (ubiquit 24.5 39 0.0016 14.9 4.1 40 24-64 9-48 (76)
42 2err_A Ataxin-2-binding protei 23.8 39 0.0016 14.9 2.3 32 26-59 31-62 (109)
43 1ttn_A DC-UBP, dendritic cell- 23.6 40 0.0017 14.8 2.5 41 24-65 32-72 (106)
44 2dhg_A TRNA selenocysteine ass 21.9 44 0.0018 14.6 6.6 28 25-52 10-37 (104)
45 1x4b_A Heterogeneous nuclear r 21.9 44 0.0018 14.6 3.8 34 25-60 28-61 (116)
46 2kj6_A Tubulin folding cofacto 21.7 44 0.0019 14.6 4.4 37 24-60 25-61 (97)
47 1z2m_A ISG15, interferon, alph 20.4 47 0.002 14.4 4.4 36 24-59 11-46 (155)
48 3ai5_A Yeast enhanced green fl 20.3 47 0.002 14.4 4.2 36 24-59 242-277 (307)
49 2kdi_A Ubiquitin, vacuolar pro 20.3 47 0.002 14.4 4.1 41 24-65 18-58 (114)
No 1
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=100.00 E-value=6.7e-36 Score=226.69 Aligned_cols=93 Identities=38% Similarity=0.557 Sum_probs=87.9
Q ss_pred CHHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCC
Q ss_conf 25786760032079988886489099998887898899999999968743378998518963331122466443223454
Q gi|254780259|r 4 IRFYDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRD 83 (110)
Q Consensus 4 ~~~~~vi~~P~~TEKs~~~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~ 83 (110)
|++||+|++|++||||+.+.|+|+|+|.|+++|||.|||+|||++|+|+|.+|||+|.+||.||++++
T Consensus 1 m~~ydvi~~P~vTEKs~~~~e~n~y~F~V~~~a~K~eIK~ave~~f~VkV~~Vnt~~~~gK~kr~~~~------------ 68 (95)
T 2zjr_Q 1 MSHYDILQAPVISEKAYSAMERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRF------------ 68 (95)
T ss_dssp -CCSSSCCEECCTHHHHHHHTTTCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSSC------------
T ss_pred CCCCCEEEECCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCEEEECCC------------
T ss_conf 98434886040288787667699899997798999999999999839964899889847953677883------------
Q ss_pred CCCCCCCCEEEEEECCCCCEECCCCC
Q ss_conf 44345881389999589973133248
Q gi|254780259|r 84 MYVSRKDVKRAFVTLAKGYSIDISAG 109 (110)
Q Consensus 84 ~~~k~~~~KKAiVtL~~G~~I~~~~g 109 (110)
.|++++||||||||++|++||||+|
T Consensus 69 -~g~~~~~KKAiVtL~~g~~I~~~~g 93 (95)
T 2zjr_Q 69 -IGQRNDRKKAIVRLAEGQSIEALAG 93 (95)
T ss_dssp -CCCCCCBEEEEEECCSSCCCSSTTT
T ss_pred -CCCCCCCEEEEEECCCCCEEEECCC
T ss_conf -4134898999999789696300267
No 2
>3fin_X 50S ribosomal protein L23; ribonucleoprotein, metal-binding, RNA- binding, rRNA-binding, zinc, tRNA-binding, repressor; 6.40A {Thermus thermophilus} PDB: 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X 2wdn_X 2wh2_X 2wh4_X 2wrj_X 2wrl_X ...
Probab=99.98 E-value=6.2e-35 Score=221.11 Aligned_cols=92 Identities=43% Similarity=0.593 Sum_probs=86.6
Q ss_pred HHHHHHHCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf 78676003207998888648909999888789889999999996874337899851896333112246644322345444
Q gi|254780259|r 6 FYDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDMY 85 (110)
Q Consensus 6 ~~~vi~~P~~TEKs~~~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~~ 85 (110)
.||+|++|++||||+.++|+|+|+|.|+++|||+|||+|||.+|+|+|.+|||+|++||.||+|++ .
T Consensus 2 ~ydii~~Pv~TEKs~~~~e~n~y~F~V~~~atK~eIK~ave~~f~VkV~~Vnt~~~~gK~kr~~~~-------------~ 68 (93)
T 3fin_X 2 AYDVILAPVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRY-------------L 68 (93)
T ss_dssp CSTTCCEECCSHHHHHHHTSSCCCEECCSSSCCTTCHHHHTTTTTCCCCCBCCCCCCCCCCSSCCC-------------C
T ss_pred CHHEEECCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCEEEECCC-------------C
T ss_conf 312653361188686556689899997697999999999999849960599988848962576882-------------4
Q ss_pred CCCCCCEEEEEECCCCCEECCCCCC
Q ss_conf 3458813899995899731332489
Q gi|254780259|r 86 VSRKDVKRAFVTLAKGYSIDISAGV 110 (110)
Q Consensus 86 ~k~~~~KKAiVtL~~G~~I~~~~gi 110 (110)
|++++||||||||++|++|||||||
T Consensus 69 g~~~~~KKAiVtL~~g~~I~~~~g~ 93 (93)
T 3fin_X 69 GKRPDRKKAIVQVAPGQKIEALEGL 93 (93)
T ss_dssp SCCCCBCCBCCSTTTCCSSSSTTC-
T ss_pred CCCCCCEEEEEECCCCCEECCCCCC
T ss_conf 2458978999993895981365798
No 3
>3ofq_T 50S ribosomal protein L23; protein biosynthesis, ribosomes, RNA, tRNA, transfer, antibi EXIT, peptidyl, ribosomal subunit, large; 3.10A {Escherichia coli} PDB: 3fik_T 2wwq_T 3ofr_T* 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T 1vs6_T 2aw4_T 2awb_T 1vt2_T 2i2v_T 2i2t_T* 2qao_T* 2qba_T* 2qbc_T* ...
Probab=99.96 E-value=2.3e-32 Score=206.31 Aligned_cols=91 Identities=41% Similarity=0.589 Sum_probs=83.9
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCC
Q ss_conf 985257867600320799888864-8909999888789889999999996874337899851896333112246644322
Q gi|254780259|r 1 MINIRFYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVR 79 (110)
Q Consensus 1 m~~~~~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~ 79 (110)
|+++++||+|++|++||||+.+.| .|+|+|.|+++|||+|||+|||++|+|+|.+|||+|.+||.+|+++.
T Consensus 2 ~~~~~~~~vi~~PvvTEKs~~~~e~~n~ytF~V~~~a~K~eIK~ave~~f~VkV~~Vnt~~~~gK~kr~~~~-------- 73 (93)
T 3ofq_T 2 IREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQR-------- 73 (93)
T ss_dssp CSCTTTTCCCCCCCCCSTTTSHHHHHSCCCCCCTTTCCSTTTTGGGTSSSSSCCSCCCCEEECCCEECSSSS--------
T ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCEEEECCC--------
T ss_conf 766789977731536888898786488899998898999999999999809976589888737953674783--------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf 3454443458813899995899731
Q gi|254780259|r 80 SSRDMYVSRKDVKRAFVTLAKGYSI 104 (110)
Q Consensus 80 ~~r~~~~k~~~~KKAiVtL~~G~~I 104 (110)
.|++++||||||||++|++|
T Consensus 74 -----~g~~~~~KKAiVtL~~g~~I 93 (93)
T 3ofq_T 74 -----IGRRSDWKKAYVTLKEGQNL 93 (93)
T ss_dssp -----CEECCCEEECCCCCCSSCCC
T ss_pred -----CCCCCCCEEEEEECCCCCCC
T ss_conf -----42458978999994896989
No 4
>2wwb_K 60S ribosomal protein L25; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 2wwa_K 2ww9_K 1s1i_T
Probab=99.94 E-value=2.8e-27 Score=176.99 Aligned_cols=84 Identities=33% Similarity=0.545 Sum_probs=76.1
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCC
Q ss_conf 985257867600320799888864-8909999888789889999999996874337899851896333112246644322
Q gi|254780259|r 1 MINIRFYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVR 79 (110)
Q Consensus 1 m~~~~~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~ 79 (110)
++.|++|+||++|++||||+.+.| +|+|+|.||.+|||.|||+|||++|+|+|.+|||++.+|
T Consensus 54 ~~kmd~y~IIk~Pl~TEKa~~~~E~~N~yvF~Vd~~AnK~qIK~AVe~lf~VkV~kVNTl~~~~---------------- 117 (142)
T 2wwb_K 54 YNRLDSYKVIEQPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN---------------- 117 (142)
T ss_dssp ---CCCCCSEEEECCSHHHHHHHHHHSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEECCTT----------------
T ss_pred CCCCCHHHCCCCCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEEEECCC----------------
T ss_conf 6667743321037542888999985898999978989989999999998198342798767389----------------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCC-EECCCCCC
Q ss_conf 34544434588138999958997-31332489
Q gi|254780259|r 80 SSRDMYVSRKDVKRAFVTLAKGY-SIDISAGV 110 (110)
Q Consensus 80 ~~r~~~~k~~~~KKAiVtL~~G~-~I~~~~gi 110 (110)
+||||||+|++|+ .||++..|
T Consensus 118 ----------~~KKA~V~La~d~dalDvAnki 139 (142)
T 2wwb_K 118 ----------GTKKAYVRLTADYDALDIANRI 139 (142)
T ss_dssp ----------SSEEEEEEECSTTCSSSSSSCC
T ss_pred ----------CCEEEEEEECCCCCHHHHHHCC
T ss_conf ----------9388999979998389997512
No 5
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.94 E-value=4.7e-27 Score=175.75 Aligned_cols=83 Identities=34% Similarity=0.516 Sum_probs=74.9
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCC
Q ss_conf 985257867600320799888864-8909999888789889999999996874337899851896333112246644322
Q gi|254780259|r 1 MINIRFYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVR 79 (110)
Q Consensus 1 m~~~~~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~ 79 (110)
++.|++|+||++|++||||+.+.| +|+|+|.||.+|||.|||+|||++|+|+|.+|||++.+
T Consensus 68 ~~~lD~y~IIk~Pl~TEKa~~~~E~~N~~vF~Vd~kAnK~qIK~AVeklf~VkV~kVNTli~~----------------- 130 (156)
T 2zkr_s 68 RNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRP----------------- 130 (156)
T ss_dssp --------CEEEECCSHHHHHHHHHHCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECS-----------------
T ss_pred CCCCCHHHEEECCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCEEEEEEEEECC-----------------
T ss_conf 777886465662655077899997458059998787998999999999839843188865758-----------------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCCE-ECCCCC
Q ss_conf 345444345881389999589973-133248
Q gi|254780259|r 80 SSRDMYVSRKDVKRAFVTLAKGYS-IDISAG 109 (110)
Q Consensus 80 ~~r~~~~k~~~~KKAiVtL~~G~~-I~~~~g 109 (110)
.+||||||+|++|++ ||++..
T Consensus 131 ---------~~~KKAyV~La~~~~AlDvAnk 152 (156)
T 2zkr_s 131 ---------DGEKKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp ---------SSCEEEEEEECTTSCHHHHHHH
T ss_pred ---------CCCEEEEEEECCCCCHHHHHHC
T ss_conf ---------9957899996899828999751
No 6
>2go5_4 Ribosomal protein L23; SR, SRP, ribosome, translation/RNA complex; 7.40A {Triticum SP} PDB: 2j37_4
Probab=99.93 E-value=1.4e-26 Score=173.00 Aligned_cols=84 Identities=29% Similarity=0.490 Sum_probs=74.8
Q ss_pred CCCCHHHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCC
Q ss_conf 985257867600320799888864-8909999888789889999999996874337899851896333112246644322
Q gi|254780259|r 1 MINIRFYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVR 79 (110)
Q Consensus 1 m~~~~~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~ 79 (110)
++.|++|+||++|++||||+.+.| +|+|+|.||.+|||.|||+|||.+|+|+|.+|||++.++
T Consensus 64 ~~kld~y~IIk~Pl~TEKa~~~~E~nn~~vF~Vd~~AnK~qIK~AVe~lf~V~V~kVNTl~~~~---------------- 127 (152)
T 2go5_4 64 RNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPD---------------- 127 (152)
T ss_dssp -----CCCSEEEECCSHHHHHHHHHSCEEEEEECTTCCSHHHHHHHHHHHCCCEEEEEEECCSS----------------
T ss_pred CCCCCHHHEEEECCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEEEECCC----------------
T ss_conf 6668975645505660889998741770799972768979999999998298211888767489----------------
Q ss_pred CCCCCCCCCCCCEEEEEECCCCC-EECCCCCC
Q ss_conf 34544434588138999958997-31332489
Q gi|254780259|r 80 SSRDMYVSRKDVKRAFVTLAKGY-SIDISAGV 110 (110)
Q Consensus 80 ~~r~~~~k~~~~KKAiVtL~~G~-~I~~~~gi 110 (110)
+||||||+|++|+ .+|++.-|
T Consensus 128 ----------g~KKAyV~L~~~~dalDvAnki 149 (152)
T 2go5_4 128 ----------GKKKAYVKLTPDYDALDVANKI 149 (152)
T ss_dssp ----------SSEEEEEEECTTTCSHHHHHTC
T ss_pred ----------CCEEEEEEECCCCCHHHHHHHC
T ss_conf ----------9689999948998389997502
No 7
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.93 E-value=2.4e-27 Score=177.40 Aligned_cols=82 Identities=35% Similarity=0.560 Sum_probs=74.8
Q ss_pred CCCHHHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCC
Q ss_conf 85257867600320799888864-89099998887898899999999968743378998518963331122466443223
Q gi|254780259|r 2 INIRFYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRS 80 (110)
Q Consensus 2 ~~~~~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~ 80 (110)
..|++|+||++|++||||+.+.| +|+|+|.||++|||.|||+|||++|+|+|.+|||++.++
T Consensus 107 k~MD~ydIIk~PviTEKAt~liE~~NqyvF~Vd~kATK~qIKkAVEkLF~VKV~kVNTli~~~----------------- 169 (198)
T 3bbo_V 107 RILDVYQILQSPIITEAAIKNIADENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPD----------------- 169 (198)
T ss_dssp ---CCCCCBCCCCCCHHHHHHHHTSCEECCEECTTCCHHHHHHTTTTTSCCCEEECCCEEETT-----------------
T ss_pred HHCCHHHEEECCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEEEECCC-----------------
T ss_conf 017864542135217888998987786999988999989999999998097020898668589-----------------
Q ss_pred CCCCCCCCCCCEEEEEECCCCC-------EECCCCC
Q ss_conf 4544434588138999958997-------3133248
Q gi|254780259|r 81 SRDMYVSRKDVKRAFVTLAKGY-------SIDISAG 109 (110)
Q Consensus 81 ~r~~~~k~~~~KKAiVtL~~G~-------~I~~~~g 109 (110)
+||||||+|++|+ .|.||+|
T Consensus 170 ---------k~KKAyVtLa~d~dAiDVA~KIGiFeG 196 (198)
T 3bbo_V 170 ---------GTKKAYIMLNKEYNASELAKKIGIFPG 196 (198)
T ss_dssp ---------TEEECCEEECTTTCTTTHHHHCCCC--
T ss_pred ---------CCEEEEEEECCCCCHHHHHHHCCCCCC
T ss_conf ---------927999997899747877640121048
No 8
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=99.91 E-value=5.1e-25 Score=163.98 Aligned_cols=79 Identities=30% Similarity=0.398 Sum_probs=70.4
Q ss_pred HHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf 7867600320799888864-890999988878988999999999687433789985189633311224664432234544
Q gi|254780259|r 6 FYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDM 84 (110)
Q Consensus 6 ~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~ 84 (110)
.||+|++|++||||+.+.| +|+|+|.|+++|||.|||+|||++|+|+|.+|||+|.++
T Consensus 2 ~y~iI~~P~iTEKs~~~~e~~N~y~F~V~~~a~K~eIK~Ave~~f~VkV~~Vnt~~~~~--------------------- 60 (85)
T 1vq8_S 2 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD--------------------- 60 (85)
T ss_dssp CCCSEEEECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT---------------------
T ss_pred CCCEEECCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCEECEEEEEECCC---------------------
T ss_conf 72564044308988998886888999985899989999999998098325798658699---------------------
Q ss_pred CCCCCCCEEEEEECCCCCE-ECCCCCC
Q ss_conf 4345881389999589973-1332489
Q gi|254780259|r 85 YVSRKDVKRAFVTLAKGYS-IDISAGV 110 (110)
Q Consensus 85 ~~k~~~~KKAiVtL~~G~~-I~~~~gi 110 (110)
++|||||+|++|++ +|+++.|
T Consensus 61 -----~~KKA~V~L~~~~~a~dva~kl 82 (85)
T 1vq8_S 61 -----GEKKAVVRLSEDDDAQEVASRI 82 (85)
T ss_dssp -----SSEEEEEEECTTSCHHHHHTTC
T ss_pred -----CCEEEEEEECCCCCHHHHHHHC
T ss_conf -----9478999948999689998731
No 9
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=59.13 E-value=10 Score=18.24 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=34.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEE
Q ss_conf 8909999888789889999999996874337899851896333
Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKR 67 (110)
Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr 67 (110)
.+.|++.|+++.|=.++|+.++..+|+.+...+ +...|+.=.
T Consensus 13 ~~~~~v~v~~~~tV~~lK~~i~~~~gip~~~q~-Li~~Gk~L~ 54 (77)
T 2bwf_A 13 QDKWEVNVAPESTVLQFKEAINKANGIPVANQR-LIYSGKILK 54 (77)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEECC
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCCHHHEE-EEECCEECC
T ss_conf 988999989989599999999988791978989-998985986
No 10
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 2o6v_D* 2wwz_A 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B 1s1q_B 1tbe_A 1ubi_A ...
Probab=51.33 E-value=14 Score=17.49 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=33.3
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf 48909999888789889999999996874337899851896
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGK 64 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK 64 (110)
....+++.|+++.|=.++|+.++...++.+...+- ...|+
T Consensus 9 ~G~t~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL-~~~Gk 48 (76)
T 3a9j_A 9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL-IFAGK 48 (76)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEE-EETTE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCCHHEEE-EECCE
T ss_conf 99899999879776999999988875989011999-99999
No 11
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=50.13 E-value=14 Score=17.38 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=34.4
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEE
Q ss_conf 890999988878988999999999687433789985189633
Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVK 66 (110)
Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~K 66 (110)
.+++.|.|+++.|=.++|+.|+..+++.+..... ...|+.-
T Consensus 41 ~~~~~v~V~~~~TV~~LK~~I~~~~gi~~~~qrL-i~~Gk~L 81 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVL-IFAGKIL 81 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEE-EETTEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHCCCHHHEEE-EECCEEC
T ss_conf 9018999899991999999877776979678899-9899887
No 12
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens}
Probab=49.33 E-value=15 Score=17.30 Aligned_cols=40 Identities=15% Similarity=0.229 Sum_probs=33.8
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf 48909999888789889999999996874337899851896
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGK 64 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK 64 (110)
....|.+.|+++.+=.++|+.|++.+++.+.... +...|+
T Consensus 12 ~G~~~~i~v~~~~tV~~LK~~I~~~~~i~~~~q~-Li~~Gk 51 (85)
T 3n3k_B 12 MGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGK 51 (85)
T ss_dssp GGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEE-EEETBE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHEE-EEECCE
T ss_conf 9989999989988499999999888698931389-999999
No 13
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=45.04 E-value=17 Score=16.91 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=33.8
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE
Q ss_conf 89099998887898899999999968743378998518963
Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65 (110)
Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~ 65 (110)
.+++.|.|+++.+=.++|+.|+..+++.+..... ...|+.
T Consensus 26 ~~~~~v~v~~~~tV~~lK~~i~~~~~v~~~~qrL-i~~Gk~ 65 (106)
T 1wx7_A 26 KDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVL-IFAGKI 65 (106)
T ss_dssp SCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEE-EETTEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCHHHEEE-EECCEE
T ss_conf 9439999899891999999986201468799799-989989
No 14
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.43 E-value=17 Score=16.94 Aligned_cols=43 Identities=16% Similarity=0.067 Sum_probs=35.7
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEE
Q ss_conf 4890999988878988999999999687433789985189633
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVK 66 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~K 66 (110)
....|.+.|+++++=.++|+.|+...++.+....-+...|+..
T Consensus 17 ~~k~~~l~v~~~~tV~~lK~~I~~~~gip~~~Q~Li~~~g~~l 59 (100)
T 2dzm_A 17 RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDV 59 (100)
T ss_dssp SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEECCCCCC
T ss_conf 9949999989989299999999987793967589981488065
No 15
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=43.83 E-value=18 Score=16.80 Aligned_cols=41 Identities=22% Similarity=0.296 Sum_probs=34.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEE
Q ss_conf 890999988878988999999999687433789985189633
Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVK 66 (110)
Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~K 66 (110)
.+++.|.|+++.|=.++|..|+..+++.+...+. ...||.=
T Consensus 34 ~~~~~i~V~~~~TV~~LK~~I~~~~~ip~~~qrL-i~~Gk~L 74 (101)
T 2klc_A 34 KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVL-IFAGKIL 74 (101)
T ss_dssp SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEE-EETTEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCHHHEEE-EECCEEC
T ss_conf 9869999899992999999999888919799884-6678098
No 16
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=41.53 E-value=20 Score=16.59 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=32.2
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCC
Q ss_conf 4890999988878988999999999687433789985189
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKG 63 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~g 63 (110)
....|.+.|++++|=.++|+.|+...++.+....-+ ..|
T Consensus 25 ~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~QkLi-~~g 63 (95)
T 1v86_A 25 NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM-YKG 63 (95)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB-SSS
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEE-ECC
T ss_conf 999999998999949999999999989597788999-887
No 17
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=39.89 E-value=21 Score=16.44 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=34.0
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEE
Q ss_conf 4890999988878988999999999687433789985189633
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVK 66 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~K 66 (110)
....+++.|+++.|=.++|+.++...++.+...+- ...|+.=
T Consensus 12 ~G~~~~l~v~~~~TV~~lK~~I~~~~gip~~~qrL-i~~Gk~L 53 (85)
T 3mtn_B 12 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL-IFAGKQL 53 (85)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEE-EETTEEC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEE-EECCEEC
T ss_conf 99899999779886999999778875989850799-9999984
No 18
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=39.37 E-value=21 Score=16.39 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=33.8
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE
Q ss_conf 489099998887898899999999968743378998518963
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~ 65 (110)
..+.+++.|+++.|=.++|+.|+...++.+....- ...|+.
T Consensus 18 ~Gkt~~l~V~~~~tV~~lK~~I~~~~gi~~~~qrL-~~~Gk~ 58 (88)
T 1sif_A 18 TGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRL-IFAGKQ 58 (88)
T ss_dssp TSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEE-EETTEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEE-EECCEE
T ss_conf 99999999789686999888789887989679388-879768
No 19
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.42 E-value=22 Score=16.30 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=32.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf 8909999888789889999999996874337899851896
Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGK 64 (110)
Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK 64 (110)
.+++.|.|++++|=.++|+.|+..+++.+...+. ...||
T Consensus 26 ~~~~~~~v~~~~TV~~lK~~I~~~~~ip~~~qrL-i~~Gk 64 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVL-IFTGK 64 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCC-EETTE
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCHHHEEE-EECCC
T ss_conf 9129999899991999999998787959578787-85783
No 20
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=37.11 E-value=23 Score=16.18 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=33.1
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf 8909999888789889999999996874337899851896
Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGK 64 (110)
Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK 64 (110)
.+.|.+.|+++.|=.++|+.|+...++.+...+- ...|+
T Consensus 24 ~~~~~l~V~~~dTV~~lK~~I~~~~gip~~~Q~L-i~~Gk 62 (94)
T 2kan_A 24 SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQL-YYSGI 62 (94)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEE-EETTE
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEE-EECCE
T ss_conf 9899999899694999999998887989021899-99998
No 21
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=36.67 E-value=19 Score=16.72 Aligned_cols=44 Identities=18% Similarity=0.255 Sum_probs=35.9
Q ss_pred HHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEE
Q ss_conf 648909999888789889999999996874337899851896333
Q gi|254780259|r 23 AGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKR 67 (110)
Q Consensus 23 ~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr 67 (110)
...+.+++.|+++.|=.++|+.|++.+++.+...+. ...|+.-.
T Consensus 9 ~~~~~~~l~v~~~~TV~~lK~~i~~~~gi~~~~~rL-i~~Gk~L~ 52 (106)
T 3m62_B 9 FKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKL-IYSGKVLQ 52 (106)
T ss_dssp TTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEE-EETTEECC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEE-EECCEECC
T ss_conf 899999999899890999999999884989568066-88999834
No 22
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=36.49 E-value=24 Score=16.12 Aligned_cols=41 Identities=20% Similarity=0.184 Sum_probs=33.9
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE
Q ss_conf 489099998887898899999999968743378998518963
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~ 65 (110)
+-..+++.|+++.|=.++|+.|+...++.+...+ +...||.
T Consensus 13 ~G~~~~~~V~~~~tV~~LK~~I~~~~gip~~~qr-Li~~Gk~ 53 (88)
T 2hj8_A 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFW-LTFEGKP 53 (88)
T ss_dssp TSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEE-EESSSSC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEE-EEECCEE
T ss_conf 9999999989979099999999998699912289-9989988
No 23
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I
Probab=35.66 E-value=25 Score=16.04 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=33.3
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf 48909999888789889999999996874337899851896
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGK 64 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK 64 (110)
..+.+++.|+++.|=.++|+.|+..+++.+...+- ...|+
T Consensus 21 ~G~~~~l~v~~~~TV~~lK~~I~~~~~i~~~~qrL-i~~Gk 60 (88)
T 3dbh_I 21 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRL-IYSGK 60 (88)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCE-EETTE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEE-EECCE
T ss_conf 99899999889692999999777762988642399-89997
No 24
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=33.79 E-value=26 Score=15.86 Aligned_cols=39 Identities=21% Similarity=0.213 Sum_probs=28.1
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEE
Q ss_conf 90999988878988999999999687433789985189633
Q gi|254780259|r 26 NQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVK 66 (110)
Q Consensus 26 n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~K 66 (110)
+.|+-.++.+++..++++.++. || .|.+|....-.|+.+
T Consensus 10 ~l~V~nLp~~~t~~~l~~~F~~-~G-~v~~~~i~~~~g~~~ 48 (92)
T 2dgv_A 10 QIFVRNLPFDFTWKMLKDKFNE-CG-HVLYADIKMENGKSK 48 (92)
T ss_dssp EEEECSCCTTCCHHHHHHHHHT-TS-CEEEEEEEESSSCEE
T ss_pred EEEEECCCCCCCHHHHHHHHHH-HC-CCEEEEEECCCCCCC
T ss_conf 9999499986999999999997-39-964999973389746
No 25
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=33.29 E-value=27 Score=15.82 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=33.3
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE
Q ss_conf 89099998887898899999999968743378998518963
Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65 (110)
Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~ 65 (110)
..++.+.|+++.+=.++|+.|+..+++.+.... +...|+.
T Consensus 31 ~~~~~i~V~~~~TV~~LK~~I~~~~gip~~~qr-Li~~Gk~ 70 (100)
T 1yqb_A 31 KDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLV-LIFAGKI 70 (100)
T ss_dssp SCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEE-EEETTEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHCCCHHHEE-EEECCEE
T ss_conf 977999989989399999999988793967979-6888898
No 26
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A
Probab=31.26 E-value=29 Score=15.62 Aligned_cols=32 Identities=9% Similarity=0.300 Sum_probs=26.0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 0999988878988999999999687433789985
Q gi|254780259|r 27 QVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLI 60 (110)
Q Consensus 27 ~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~ 60 (110)
.|+=.++.++|..+|+++++. || .|..|..+.
T Consensus 75 lfV~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~ 106 (165)
T 1rk8_A 75 LFVTSIHEEAQEDEIQEKFCD-YG-EIKNIHLNL 106 (165)
T ss_dssp EEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEE
T ss_pred EEECCCCCCCCHHHHHHHHHH-HC-CCEEEEEEE
T ss_conf 998189985889999999998-69-952886652
No 27
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.29 E-value=27 Score=15.81 Aligned_cols=34 Identities=12% Similarity=0.159 Sum_probs=29.7
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEE
Q ss_conf 4890999988878988999999999687433789
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVN 57 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vn 57 (110)
+...+.+.|++++|=.++|..|+..+++.+..-+
T Consensus 16 ~G~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~Qr 49 (105)
T 1v2y_A 16 DGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREG 49 (105)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHHC
T ss_conf 9999988989989699999999998794978824
No 28
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=30.16 E-value=6.6 Score=19.34 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHCCEEEEEEC----CCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf 20799888864890999988----8789889999999996874337899
Q gi|254780259|r 14 VIAEKSTLLAGQNQVVFNVK----KDSSKSEIKSAVEALFSVKVVSVNT 58 (110)
Q Consensus 14 ~~TEKs~~~~e~n~y~F~V~----~~atK~eIK~ave~~f~V~V~~Vnt 58 (110)
++++|...|+.-.++.|.|. +..++.||+..+.+.|++++.-|=+
T Consensus 5 I~~~k~N~LL~R~Ei~~~v~h~g~~Tpsr~ei~~kla~~~~~~~~~vvv 53 (98)
T 2g1d_A 5 IKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGVDKELVIV 53 (98)
T ss_dssp EEEEEECSSSCEEEEEEEEECCTTSCCCHHHHHHHHHHHHHSCSTTEEC
T ss_pred EEECCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 9863407770638999999838999989999999999997989787999
No 29
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=29.83 E-value=31 Score=15.47 Aligned_cols=43 Identities=12% Similarity=0.134 Sum_probs=35.2
Q ss_pred HHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEE
Q ss_conf 64890999988878988999999999687433789985189633
Q gi|254780259|r 23 AGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVK 66 (110)
Q Consensus 23 ~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~K 66 (110)
.....+.+.|+++.+=.++|+.|+...|+.+...+- ...|+.=
T Consensus 8 l~G~~~~l~v~~~~tV~~LK~~I~~~~gip~~~qrL-i~~Gk~L 50 (98)
T 1yx5_B 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL-IFAGKQL 50 (98)
T ss_dssp TTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEE-EETTEEC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEE-EECCEEC
T ss_conf 899899999889887999997440451999799788-8799883
No 30
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A 1p98_A 1p9d_U 1p1a_A
Probab=29.79 E-value=31 Score=15.47 Aligned_cols=45 Identities=22% Similarity=0.226 Sum_probs=35.8
Q ss_pred HHCCEEEEEECCCCCHHHHHHHHHHHHCCC--EEEEEEEECCCCEEE
Q ss_conf 648909999888789889999999996874--337899851896333
Q gi|254780259|r 23 AGQNQVVFNVKKDSSKSEIKSAVEALFSVK--VVSVNTLIRKGKVKR 67 (110)
Q Consensus 23 ~e~n~y~F~V~~~atK~eIK~ave~~f~V~--V~~Vnt~~~~gK~Kr 67 (110)
....+|++.|+++.|=.++|+.|+..|+.+ +.+--.|++.||.=+
T Consensus 15 ~~~~~~~i~v~~~~tV~~lK~~i~~~~~~~~~p~~~q~LIy~Gk~L~ 61 (368)
T 1oqy_A 15 LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILS 61 (368)
T ss_dssp TTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEEC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHEEEEECCEECC
T ss_conf 89998999969979199999999987289889744248888982767
No 31
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=29.38 E-value=31 Score=15.43 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=34.7
Q ss_pred HHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE
Q ss_conf 6489099998887898899999999968743378998518963
Q gi|254780259|r 23 AGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65 (110)
Q Consensus 23 ~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~ 65 (110)
.....|.+.|++..+=.++|+.|+...|+.+...+- ...|+.
T Consensus 9 ~~G~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrL-~~~Gk~ 50 (96)
T 3k9o_B 9 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRL-IFAGKQ 50 (96)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEE-EETTEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEE-EECCEE
T ss_conf 899999999788472999998778761999660799-999999
No 32
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=29.18 E-value=32 Score=15.41 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=34.0
Q ss_pred HHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf 648909999888789889999999996874337899851896
Q gi|254780259|r 23 AGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGK 64 (110)
Q Consensus 23 ~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK 64 (110)
...+.+.+.|++..|=.++|..|+...|+.+...+- ...|+
T Consensus 18 l~G~~~~l~V~~~dTV~~lK~~I~~~~gip~~~QrL-iy~Gk 58 (84)
T 2kk8_A 18 LNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTL-IVDGI 58 (84)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEE-EETTE
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEE-EECCE
T ss_conf 899999999899486999999999871989766899-99998
No 33
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.78 E-value=32 Score=15.37 Aligned_cols=39 Identities=13% Similarity=0.077 Sum_probs=31.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf 8909999888789889999999996874337899851896
Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGK 64 (110)
Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK 64 (110)
...|+++|+++++=.++|+.||...++.+..-+- ...|+
T Consensus 21 ~~t~~l~V~~~~tV~~lK~~I~~~~gip~~~qrL-i~~G~ 59 (102)
T 1v5o_A 21 EVTFSLQVNPDFELSNFRVLCELESGVPAEEAQI-VYMEQ 59 (102)
T ss_dssp CCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCE-EETTE
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCHHHEEE-EECCE
T ss_conf 9899999788044999999997776849021898-75886
No 34
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=27.15 E-value=35 Score=15.20 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=33.9
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEE
Q ss_conf 890999988878988999999999687433789985189633
Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVK 66 (110)
Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~K 66 (110)
.+.|.+.|+++.+=.++|+.|+...++.+....-+ ..|+.-
T Consensus 21 g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~Q~Li-~~Gk~L 61 (85)
T 2kd0_A 21 GKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI-FKGKVL 61 (85)
T ss_dssp TEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE-ETTEEC
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEE-ECCEEC
T ss_conf 99999999999909999999857778296446999-999998
No 35
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.91 E-value=35 Score=15.17 Aligned_cols=42 Identities=19% Similarity=0.321 Sum_probs=29.7
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEE
Q ss_conf 48909999888789889999999996874337899851896333
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKR 67 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr 67 (110)
..|.|+=.++.+++..++++.++. || .|.+|..+.-.++.+.
T Consensus 15 ~~~lfV~nLp~~~te~~L~~~F~~-~G-~i~~~~i~~~~~~~~g 56 (103)
T 2d9p_A 15 VVNLYVKNLDDGIDDERLRKAFSP-FG-TITSAKVMMEGGRSKG 56 (103)
T ss_dssp CCCEEEECCCTTCCHHHHHHTTTT-TS-CEEEEEEEECSSSEEE
T ss_pred CCEEEEECCCCCCCHHHHHHHHHH-CC-CCEEEEEECCCCCCCC
T ss_conf 988999699998989999999997-09-9518999743898576
No 36
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=26.27 E-value=36 Score=15.10 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=33.3
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf 48909999888789889999999996874337899851896
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGK 64 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK 64 (110)
.-+.+.+.|++..+=.++|+.|+...++.+....-+ ..|+
T Consensus 44 ~Gkt~~l~V~~~~tV~~LK~~I~~~~gip~~~qrLi-y~Gk 83 (111)
T 2ojr_A 44 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 83 (111)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEE-ETTE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCCHHEEEE-ECCE
T ss_conf 999999998997909999999999888791045787-7887
No 37
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.78 E-value=26 Score=15.95 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=32.4
Q ss_pred HHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 6489099998887898899999999968743378998
Q gi|254780259|r 23 AGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59 (110)
Q Consensus 23 ~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110)
.+...+.+.|+...|=.++|.-++.+||+.+...+-.
T Consensus 20 ~~~~~~~~kl~~~~TV~~LK~~i~~~~gip~~~q~L~ 56 (97)
T 1wjn_A 20 PERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLS 56 (97)
T ss_dssp SSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEE
T ss_conf 7775799990999989999999999879796895999
No 38
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=25.18 E-value=23 Score=16.17 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=32.4
Q ss_pred CHHHHHHHHCCEEEEEEC----CCCCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 799888864890999988----878988999999999687433789985
Q gi|254780259|r 16 AEKSTLLAGQNQVVFNVK----KDSSKSEIKSAVEALFSVKVVSVNTLI 60 (110)
Q Consensus 16 TEKs~~~~e~n~y~F~V~----~~atK~eIK~ave~~f~V~V~~Vnt~~ 60 (110)
.++-..|..-.++.|.|. +..++.+|+.++...|+++..-|=+..
T Consensus 15 ~~k~NpLL~RkEi~~~v~h~g~~TPsr~ei~~kla~~~~~~~~~vvv~~ 63 (107)
T 2v94_A 15 EVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQY 63 (107)
T ss_dssp EEEEETTTTEEEEEEEEECTTSCCCCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred ECCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 7111788475899999971899998999999999997795978899975
No 39
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=24.86 E-value=14 Score=17.39 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHCCEEEEEECC---CCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 207998888648909999888---7898899999999968743378998
Q gi|254780259|r 14 VIAEKSTLLAGQNQVVFNVKK---DSSKSEIKSAVEALFSVKVVSVNTL 59 (110)
Q Consensus 14 ~~TEKs~~~~e~n~y~F~V~~---~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110)
++.++-..|+.-.+++|.|.- .-++.+|+..+-+.|++++.-|=+.
T Consensus 5 I~~~k~N~LL~R~Ei~~~v~h~g~Tpsr~ei~~kla~~~~~~~~~vvv~ 53 (101)
T 1xn9_A 5 IIKDKKNPLLNRRELDFIVKYEGSTPSRNDVRNKLAAMLNAPLELLVIQ 53 (101)
T ss_dssp EEEEEEETTTTEEEEEEEEECSSSCCCHHHHHHHHHHHTTCCTTTEEEE
T ss_pred EEECCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 9862448772638999999889999899999999999679296889997
No 40
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=24.79 E-value=16 Score=17.05 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=32.2
Q ss_pred CCHHHHHHHHCCEEEEEEC---CCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 0799888864890999988---87898899999999968743378998
Q gi|254780259|r 15 IAEKSTLLAGQNQVVFNVK---KDSSKSEIKSAVEALFSVKVVSVNTL 59 (110)
Q Consensus 15 ~TEKs~~~~e~n~y~F~V~---~~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110)
+.++-..|+.-.+++|.|. ...++.+|+..+-.+|+++..-|=+.
T Consensus 6 ~~~k~N~LL~R~Ei~~~v~h~g~tpsr~ei~~kla~~~~~~~~~vvv~ 53 (102)
T 1ywx_A 6 ISDRNNPLLQRREIKFTVSFDAATPSIKDVKMKLVAVLNANKQVLVVD 53 (102)
T ss_dssp EEEEEETTTTEEEEEEEEECSSCCCCHHHHHHHHHHHHTSCSTTEEEE
T ss_pred EECCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 863558772638999999889999899999999999779397889998
No 41
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protein; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=24.50 E-value=39 Score=14.91 Aligned_cols=40 Identities=18% Similarity=0.212 Sum_probs=33.0
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf 48909999888789889999999996874337899851896
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGK 64 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK 64 (110)
.-..+.+.|+++.|=.++|+.|+...++.+...+- ...|+
T Consensus 9 ~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~qrL-i~~Gk 48 (76)
T 1ndd_A 9 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRL-IYSGK 48 (76)
T ss_dssp TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEE-EETTE
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEE-EECCE
T ss_conf 99899999789792999999997775768744599-99998
No 42
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=23.77 E-value=39 Score=14.91 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=24.5
Q ss_pred CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 9099998887898899999999968743378998
Q gi|254780259|r 26 NQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59 (110)
Q Consensus 26 n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110)
..|+-.++.+.+..+|++.++. || .|.+|+.+
T Consensus 31 ~l~V~nLp~~~te~~l~~~f~~-~G-~I~~v~i~ 62 (109)
T 2err_A 31 RLHVSNIPFRFRDPDLRQMFGQ-FG-KILDVEII 62 (109)
T ss_dssp EEEEESCCTTCCHHHHHHHGGG-TC-CCSCEEEC
T ss_pred EEEEECCCCCCCHHHHHHHHHH-CC-CEEEEEEE
T ss_conf 8999798986999999999986-49-98999773
No 43
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.60 E-value=40 Score=14.81 Aligned_cols=41 Identities=15% Similarity=0.113 Sum_probs=34.2
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE
Q ss_conf 489099998887898899999999968743378998518963
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~ 65 (110)
.-+.+.+.|++..|=.++|..|+...++.+...+ +...|+.
T Consensus 32 ~G~~~~l~V~~~dTV~~lK~~I~~~~~ip~~~qr-Li~~Gk~ 72 (106)
T 1ttn_A 32 TGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQR-WFFSGRP 72 (106)
T ss_dssp TTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCE-EEETTEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHEE-EEECCEE
T ss_conf 9999999988968099999999998895968978-7766718
No 44
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.93 E-value=44 Score=14.61 Aligned_cols=28 Identities=7% Similarity=0.031 Sum_probs=23.5
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCC
Q ss_conf 8909999888789889999999996874
Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVK 52 (110)
Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~ 52 (110)
.+.|+=.++.+++..+|++.+...+++-
T Consensus 10 ~~lfV~nLp~~~te~~l~~~F~~~g~~~ 37 (104)
T 2dhg_A 10 YSLFVGDLTPDVDDGMLYEFFVKVYPSC 37 (104)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHCTTE
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCC
T ss_conf 8999948998488999999986533563
No 45
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.88 E-value=44 Score=14.60 Aligned_cols=34 Identities=6% Similarity=0.190 Sum_probs=27.6
Q ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 890999988878988999999999687433789985
Q gi|254780259|r 25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLI 60 (110)
Q Consensus 25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~ 60 (110)
.+.|+-.++.++|..++++.++. || .|.+|+.+.
T Consensus 28 ~~lfV~nL~~~~te~~L~~~F~~-~G-~i~~v~i~~ 61 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQ-WG-KLTDCVVMR 61 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTS-SC-CCSEEEEEC
T ss_pred CEEEEECCCCCCCHHHHHHHHHH-CC-CEEEEEEEC
T ss_conf 88999089986889999999986-09-778888502
No 46
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=21.69 E-value=44 Score=14.58 Aligned_cols=37 Identities=11% Similarity=-0.039 Sum_probs=32.3
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf 4890999988878988999999999687433789985
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLI 60 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~ 60 (110)
+.....+.|+++.|=.++|.-+|..+|+.+...+..-
T Consensus 25 ~~~~~e~~v~~~~TV~~LK~kIe~~~gip~~~QrL~~ 61 (97)
T 2kj6_A 25 KSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALEL 61 (97)
T ss_dssp SCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEE
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEE
T ss_conf 8759999989818099999999998799868989999
No 47
>1z2m_A ISG15, interferon, alpha-inducible protein (clone IFI- 15K); ubiquitin cross reactive protein, signaling protein; 2.50A {Homo sapiens} SCOP: d.15.1.1 d.15.1.1
Probab=20.42 E-value=47 Score=14.42 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=30.3
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 489099998887898899999999968743378998
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110)
....|++.|++++|=.++|..|+..+++.+..-+..
T Consensus 11 ~g~~~~l~v~~~~tV~~lK~~I~~~~~i~~~~q~L~ 46 (155)
T 1z2m_A 11 AGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLA 46 (155)
T ss_dssp SSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEE
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHEEEE
T ss_conf 997999997997929999999998879697992999
No 48
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria}
Probab=20.30 E-value=47 Score=14.41 Aligned_cols=36 Identities=6% Similarity=0.135 Sum_probs=31.8
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf 489099998887898899999999968743378998
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL 59 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~ 59 (110)
..+.+.+.|++++|=.++|+.||...++.+...+.+
T Consensus 242 ~Gkt~~L~V~~~~TV~dLK~~Ie~k~gIP~e~QrLi 277 (307)
T 3ai5_A 242 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI 277 (307)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHEEEE
T ss_conf 998999997997919999999999879896896999
No 49
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=20.27 E-value=47 Score=14.40 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=33.6
Q ss_pred HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE
Q ss_conf 489099998887898899999999968743378998518963
Q gi|254780259|r 24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV 65 (110)
Q Consensus 24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~ 65 (110)
.-..+.+.|+++.|=.++|..|+...++.+....-+ ..|+.
T Consensus 18 ~G~t~~l~V~~~~tV~~LK~~I~~~~gip~~~qrL~-~~Gk~ 58 (114)
T 2kdi_A 18 TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-WAGKQ 58 (114)
T ss_dssp TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEE-ECCEE
T ss_conf 998999997995939999999999879791267999-89878
Done!