Query         gi|254780259|ref|YP_003064672.1| 50S ribosomal protein L23 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 110
No_of_seqs    117 out of 1550
Neff          5.4 
Searched_HMMs 13730
Date          Tue May 24 06:51:12 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780259.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2zjrq1 d.12.1.1 (Q:2-94) Ribo 100.0 3.3E-35 2.4E-39  221.3   7.6   92    5-109     1-92  (93)
  2 d2j01x1 d.12.1.1 (X:3-95) Ribo 100.0 3.6E-35 2.6E-39  221.1  -1.4   92    6-110     2-93  (93)
  3 d2qamt1 d.12.1.1 (T:1-93) Ribo 100.0 6.8E-33   5E-37  208.0   2.5   91    1-104     2-93  (93)
  4 d1vqos1 d.12.1.1 (S:1-81) Ribo  99.9 5.5E-26   4E-30  168.2   8.1   79    6-110     1-81  (81)
  5 d1yqba1 d.15.1.1 (A:15-98) Ubi  57.8     6.2 0.00045   18.1   4.3   40   25-65     16-55  (84)
  6 d1j8ca_ d.15.1.1 (A:) Ubiquiti  53.9     7.2 0.00053   17.7   5.0   40   25-65     41-80  (103)
  7 d2bwfa1 d.15.1.1 (A:2-74) DSK2  53.1     7.5 0.00054   17.7   4.1   40   25-65     10-49  (73)
  8 d1v86a_ d.15.1.1 (A:) hypothet  51.7     7.6 0.00055   17.6   3.7   35   25-59     26-60  (95)
  9 d1v5oa_ d.15.1.1 (A:) 1700011n  45.0      10 0.00073   16.9   3.5   40   25-65     21-60  (102)
 10 d1zkha1 d.15.1.1 (A:1-86) Spli  44.3     4.3 0.00032   19.0   1.5   52   12-64      8-59  (86)
 11 d1ogwa_ d.15.1.1 (A:) Ubiquiti  41.9      11 0.00082   16.6   4.1   42   24-66      9-50  (76)
 12 d1v2ya_ d.15.1.1 (A:) Ubiquiti  35.3      11 0.00084   16.6   2.5   33   24-56     16-48  (105)
 13 d1wx8a1 d.15.1.1 (A:8-90) 4931  33.8      15  0.0011   15.9   3.7   39   25-64     19-57  (83)
 14 d2cqga1 d.58.7.1 (A:96-185) TA  31.5      17  0.0012   15.6   6.0   34   25-60      9-42  (90)
 15 d1z2ma2 d.15.1.1 (A:79-154) In  30.0      18  0.0013   15.5   4.8   41   24-65     12-52  (76)
 16 d1bt0a_ d.15.1.1 (A:) Rub1 {Mo  29.8      18  0.0013   15.5   4.1   41   24-65      9-49  (73)
 17 d1ywxa1 d.12.1.3 (A:1-102) Rib  28.8     7.3 0.00053   17.7   0.6   47   15-61      6-55  (102)
 18 d2g1da1 d.12.1.3 (A:1-98) Ribo  28.2     4.3 0.00031   19.0  -0.7   45   14-58      5-53  (98)
 19 d2v94a1 d.12.1.3 (A:1-93) Ribo  23.7      15  0.0011   15.9   1.4   43   18-60      9-55  (93)
 20 d1xn9a_ d.12.1.3 (A:) Ribosoma  23.3     9.3 0.00067   17.1   0.3   47   15-61      6-55  (101)
 21 d1fxla1 d.58.7.1 (A:37-118) Hu  22.0      25  0.0018   14.6   5.1   33   26-60      4-36  (82)
 22 d1wjna_ d.15.1.1 (A:) Tubulin-  21.0      26  0.0019   14.5   2.3   37   23-59     20-56  (97)
 23 d1fxla2 d.58.7.1 (A:119-203) H  20.9      26  0.0019   14.5   3.4   38   21-60      3-40  (85)

No 1  
>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus radiodurans [TaxId: 1299]}
Probab=100.00  E-value=3.3e-35  Score=221.34  Aligned_cols=92  Identities=38%  Similarity=0.554  Sum_probs=86.5

Q ss_pred             HHHHHHHHCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             57867600320799888864890999988878988999999999687433789985189633311224664432234544
Q gi|254780259|r    5 RFYDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDM   84 (110)
Q Consensus         5 ~~~~vi~~P~~TEKs~~~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~   84 (110)
                      .|||+|++|++||||+.+.|+|+|+|.|+++|||+|||+|||++|+|+|.+|||+|.+||.||++++             
T Consensus         1 ~~ydvi~~P~iTEKs~~~~e~n~y~F~V~~~atK~~Ik~ave~lf~VkV~~Vnt~~~~gK~kr~~~~-------------   67 (93)
T d2zjrq1           1 SHYDILQAPVISEKAYSAMERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVGRF-------------   67 (93)
T ss_dssp             CCSSSCCEECCTHHHHHHHTTTCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSSSC-------------
T ss_pred             CCCCEEEECCCCHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCEEECCC-------------
T ss_conf             9633886032088787777799799998087898999999999819875899989817972377994-------------


Q ss_pred             CCCCCCCEEEEEECCCCCEECCCCC
Q ss_conf             4345881389999589973133248
Q gi|254780259|r   85 YVSRKDVKRAFVTLAKGYSIDISAG  109 (110)
Q Consensus        85 ~~k~~~~KKAiVtL~~G~~I~~~~g  109 (110)
                      .|++++||||||||++|++||||+|
T Consensus        68 ~g~~~~~KKAiVtL~~g~~I~~~~g   92 (93)
T d2zjrq1          68 IGQRNDRKKAIVRLAEGQSIEALAG   92 (93)
T ss_dssp             CCCCCCBEEEEEECCSSCCCSSTTT
T ss_pred             CEECCCCEEEEEECCCCCCCCCCCC
T ss_conf             3403897899999689694031489


No 2  
>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus thermophilus [TaxId: 274]}
Probab=99.98  E-value=3.6e-35  Score=221.10  Aligned_cols=92  Identities=43%  Similarity=0.593  Sum_probs=86.5

Q ss_pred             HHHHHHHCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf             78676003207998888648909999888789889999999996874337899851896333112246644322345444
Q gi|254780259|r    6 FYDTIISPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDMY   85 (110)
Q Consensus         6 ~~~vi~~P~~TEKs~~~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~~   85 (110)
                      .||+|++|++||||+.+.|+|+|+|.|+++|||+|||+|||++|+|+|.+|||+|++||.||++++             .
T Consensus         2 aydvi~~PiiTEKs~~l~e~n~y~F~V~~~atK~eIK~ave~~f~VkV~~Vnt~~~~gK~kr~~~~-------------~   68 (93)
T d2j01x1           2 AYDVILAPVLSEKAYAGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGRY-------------L   68 (93)
T ss_dssp             CSTTCCEECCSHHHHHHHTSSCCCEECCSSSCCTTCHHHHTTTTTCCCCCBCCCCCCCCCCSSCCC-------------C
T ss_pred             CHHEEECCCCCHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHCCCEEEEEEEEECCCEEEECCC-------------C
T ss_conf             313653252188676667689699998087898999999999809971699989847960576884-------------4


Q ss_pred             CCCCCCEEEEEECCCCCEECCCCCC
Q ss_conf             3458813899995899731332489
Q gi|254780259|r   86 VSRKDVKRAFVTLAKGYSIDISAGV  110 (110)
Q Consensus        86 ~k~~~~KKAiVtL~~G~~I~~~~gi  110 (110)
                      |++++||||||||++|++||||+||
T Consensus        69 g~~~~~KKA~V~L~~g~~I~~~~g~   93 (93)
T d2j01x1          69 GKRPDRKKAIVQVAPGQKIEALEGL   93 (93)
T ss_dssp             SCCCCBCCBCCSTTTCCSSSSTTC-
T ss_pred             CCCCCCEEEEEECCCCCEECCCCCC
T ss_conf             2458988999993896980365798


No 3  
>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli [TaxId: 562]}
Probab=99.97  E-value=6.8e-33  Score=207.98  Aligned_cols=91  Identities=41%  Similarity=0.592  Sum_probs=84.3

Q ss_pred             CCCCHHHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCC
Q ss_conf             985257867600320799888864-8909999888789889999999996874337899851896333112246644322
Q gi|254780259|r    1 MINIRFYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVR   79 (110)
Q Consensus         1 m~~~~~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~   79 (110)
                      |+++++||+|++|++||||+.+.| .|+|+|.|+++|||+|||+|||++|+|+|.+|||+|++||.+|+++         
T Consensus         2 ~~~~~~~~ii~~PviTEKs~~~~e~~n~ytF~V~~~AtK~eIK~ave~~f~VkV~~Vnt~~~~gK~kr~~~---------   72 (93)
T d2qamt1           2 IREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQ---------   72 (93)
T ss_dssp             CSCTTTCCCEEEECCCHHHHTHHHHSSCCCEEECSSCCSHHHHHHHHHTTCCCCCCCCCEEECCCEECSTT---------
T ss_pred             CCHHHHHHHHHCCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCEEEECC---------
T ss_conf             76679998884261688889867639989999899899999999999982996229988885794367588---------


Q ss_pred             CCCCCCCCCCCCEEEEEECCCCCEE
Q ss_conf             3454443458813899995899731
Q gi|254780259|r   80 SSRDMYVSRKDVKRAFVTLAKGYSI  104 (110)
Q Consensus        80 ~~r~~~~k~~~~KKAiVtL~~G~~I  104 (110)
                          ..|++++||||||||++|++|
T Consensus        73 ----~~g~~~~~KKAiVtL~~g~~I   93 (93)
T d2qamt1          73 ----RIGRRSDWKKAYVTLKEGQNL   93 (93)
T ss_dssp             ----CCEECCCEEECCCCCSSCCCC
T ss_pred             ----CCCCCCCCEEEEEECCCCCCC
T ss_conf             ----440248978999993897869


No 4  
>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=99.92  E-value=5.5e-26  Score=168.19  Aligned_cols=79  Identities=30%  Similarity=0.393  Sum_probs=71.7

Q ss_pred             HHHHHHHCCCCHHHHHHHH-CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCCC
Q ss_conf             7867600320799888864-890999988878988999999999687433789985189633311224664432234544
Q gi|254780259|r    6 FYDTIISPVIAEKSTLLAG-QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVKRLSRISAARSRVRSSRDM   84 (110)
Q Consensus         6 ~~~vi~~P~~TEKs~~~~e-~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~Kr~~r~~g~k~~~~~~r~~   84 (110)
                      .||+|++|++||||+.+.| +|+|+|.|+++|||+|||+|||.+|+|+|.+|||++.+++                    
T Consensus         1 ~y~iI~~P~iTEKs~~~~e~~n~y~F~V~~~A~K~~IK~AVe~lf~VkV~~Vnt~~~~~~--------------------   60 (81)
T d1vqos1           1 SWDVIKHPHVTEKAMNDMDFQNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDG--------------------   60 (81)
T ss_dssp             CCCSEEEECCSHHHHHHHHHSCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTS--------------------
T ss_pred             CCCEEECCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCC--------------------
T ss_conf             963110031079889988868779999768589899999999984993018997673899--------------------


Q ss_pred             CCCCCCCEEEEEECCCCCE-ECCCCCC
Q ss_conf             4345881389999589973-1332489
Q gi|254780259|r   85 YVSRKDVKRAFVTLAKGYS-IDISAGV  110 (110)
Q Consensus        85 ~~k~~~~KKAiVtL~~G~~-I~~~~gi  110 (110)
                            +|||||+|++|++ +|+++.|
T Consensus        61 ------~KkA~V~L~~~~~a~dia~ki   81 (81)
T d1vqos1          61 ------EKKAVVRLSEDDDAQEVASRI   81 (81)
T ss_dssp             ------SEEEEEEECTTSCHHHHHTTC
T ss_pred             ------CEEEEEEECCCCCHHHHHHCC
T ss_conf             ------578999948999689997359


No 5  
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.81  E-value=6.2  Score=18.11  Aligned_cols=40  Identities=15%  Similarity=0.289  Sum_probs=34.0

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE
Q ss_conf             89099998887898899999999968743378998518963
Q gi|254780259|r   25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV   65 (110)
Q Consensus        25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~   65 (110)
                      .+++.|.|+++.+=.++|+.|+..+++.+...+.+ ..|+.
T Consensus        16 ~~~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~Gk~   55 (84)
T d1yqba1          16 KDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI-FAGKI   55 (84)
T ss_dssp             SCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-ETTEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHHCCCCHHEEEE-EEEEE
T ss_conf             97599998998909999999899879590447888-75000


No 6  
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=53.92  E-value=7.2  Score=17.73  Aligned_cols=40  Identities=25%  Similarity=0.348  Sum_probs=33.5

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE
Q ss_conf             89099998887898899999999968743378998518963
Q gi|254780259|r   25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV   65 (110)
Q Consensus        25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~   65 (110)
                      ..++.|.|+++.|=.++|+.|+..+++.+...+. ...|+.
T Consensus        41 ~~~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrL-i~~Gk~   80 (103)
T d1j8ca_          41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVL-IFAGKI   80 (103)
T ss_dssp             SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEE-EETTEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHCCCHHHEEE-EEEEEC
T ss_conf             9538999899892999999999998919779101-333002


No 7  
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=53.12  E-value=7.5  Score=17.66  Aligned_cols=40  Identities=25%  Similarity=0.323  Sum_probs=33.3

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE
Q ss_conf             89099998887898899999999968743378998518963
Q gi|254780259|r   25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV   65 (110)
Q Consensus        25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~   65 (110)
                      .+.|.+.|+++.|=.++|+.++..+|+.+...+- ...|+.
T Consensus        10 ~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrL-i~~Gk~   49 (73)
T d2bwfa1          10 QDKWEVNVAPESTVLQFKEAINKANGIPVANQRL-IYSGKI   49 (73)
T ss_dssp             TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEE-EETTEE
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHCCCHHHEEE-EECCEE
T ss_conf             9589999899892999999999988929579198-889859


No 8  
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=51.65  E-value=7.6  Score=17.62  Aligned_cols=35  Identities=17%  Similarity=0.239  Sum_probs=30.5

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             89099998887898899999999968743378998
Q gi|254780259|r   25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL   59 (110)
Q Consensus        25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~   59 (110)
                      ...|.+.|++++|=.++|+.|+...+|.+.....+
T Consensus        26 ~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li   60 (95)
T d1v86a_          26 KTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM   60 (95)
T ss_dssp             TEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB
T ss_pred             CEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEE
T ss_conf             99999998999939999999998767796377888


No 9  
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=44.98  E-value=10  Score=16.90  Aligned_cols=40  Identities=13%  Similarity=0.118  Sum_probs=32.8

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE
Q ss_conf             89099998887898899999999968743378998518963
Q gi|254780259|r   25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV   65 (110)
Q Consensus        25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~   65 (110)
                      ...|.++|+++++=.++|..||...++.+..-+ +...|+.
T Consensus        21 ~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~-Li~~Gk~   60 (102)
T d1v5oa_          21 EVTFSLQVNPDFELSNFRVLCELESGVPAEEAQ-IVYMEQL   60 (102)
T ss_dssp             CCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBC-EEETTEE
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHCCCCCEEE-EEECCEE
T ss_conf             988999989936399999999998688853189-9868858


No 10 
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.30  E-value=4.3  Score=19.01  Aligned_cols=52  Identities=15%  Similarity=0.155  Sum_probs=37.9

Q ss_pred             HCCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf             03207998888648909999888789889999999996874337899851896
Q gi|254780259|r   12 SPVIAEKSTLLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGK   64 (110)
Q Consensus        12 ~P~~TEKs~~~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK   64 (110)
                      .|-..|+..+...-..+++.|+++.+=.++|..|+...++.+..-+- ...|+
T Consensus         8 ~p~~~~~~~~~L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~L-i~~Gk   59 (86)
T d1zkha1           8 VPNMQDKTEWKLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKL-QYEGI   59 (86)
T ss_dssp             CCCCSSSSSSSCSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEE-EETTE
T ss_pred             CCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCHHHEEE-EECCC
T ss_conf             48987654556477499999899896999999998665699689798-85881


No 11 
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.87  E-value=11  Score=16.62  Aligned_cols=42  Identities=14%  Similarity=0.188  Sum_probs=34.6

Q ss_pred             HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEE
Q ss_conf             4890999988878988999999999687433789985189633
Q gi|254780259|r   24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKVK   66 (110)
Q Consensus        24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~K   66 (110)
                      ..+.+.+.|+++.|=.++|+.|+...++.+.... +...|+.-
T Consensus         9 ~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qr-L~~~Gk~L   50 (76)
T d1ogwa_           9 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQR-LIFAGKQL   50 (76)
T ss_dssp             TSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEE-EEETTEEC
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHCCCCHHHEE-EEECCEEC
T ss_conf             9999999978978399999753032498958877-37788674


No 12 
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.32  E-value=11  Score=16.58  Aligned_cols=33  Identities=12%  Similarity=0.160  Sum_probs=29.7

Q ss_pred             HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEE
Q ss_conf             489099998887898899999999968743378
Q gi|254780259|r   24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSV   56 (110)
Q Consensus        24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~V   56 (110)
                      +...+.+.|++++|=.++|..|+..+++.+..-
T Consensus        16 ~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Q   48 (105)
T d1v2ya_          16 DGEVMPVVVVQNATVLDLKKAIQRYVQLKQERE   48 (105)
T ss_dssp             SSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHH
T ss_conf             899999997998929999999999879697881


No 13 
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.78  E-value=15  Score=15.86  Aligned_cols=39  Identities=21%  Similarity=0.256  Sum_probs=32.0

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCC
Q ss_conf             8909999888789889999999996874337899851896
Q gi|254780259|r   25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGK   64 (110)
Q Consensus        25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK   64 (110)
                      .+++.|.|++++|=.++|+.++..+++.+...+ +...||
T Consensus        19 ~~~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qr-L~f~Gk   57 (83)
T d1wx8a1          19 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLV-LIFTGK   57 (83)
T ss_dssp             SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBC-CEETTE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHCCCHHHEE-EEEEHH
T ss_conf             985999999989299999998888698956799-998810


No 14 
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.48  E-value=17  Score=15.64  Aligned_cols=34  Identities=15%  Similarity=0.317  Sum_probs=29.1

Q ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf             890999988878988999999999687433789985
Q gi|254780259|r   25 QNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLI   60 (110)
Q Consensus        25 ~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~   60 (110)
                      .+.|+-.++.++|.-++++.++. || .|.+|+.+.
T Consensus         9 ~~lfV~nLp~~~te~~l~~~F~~-~G-~i~~v~i~~   42 (90)
T d2cqga1           9 SDLIVLGLPWKTTEQDLKEYFST-FG-EVLMVQVKK   42 (90)
T ss_dssp             CCEEEESCCSSCCHHHHHHHHGG-GS-CEEEEEEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHHH-HC-CCCEEEECC
T ss_conf             86999799998999999999976-26-330000024


No 15 
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.04  E-value=18  Score=15.50  Aligned_cols=41  Identities=20%  Similarity=0.184  Sum_probs=33.9

Q ss_pred             HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE
Q ss_conf             489099998887898899999999968743378998518963
Q gi|254780259|r   24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV   65 (110)
Q Consensus        24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~   65 (110)
                      ....+++.|+++.|=.++|+.|+...|+.+...+ +...|+.
T Consensus        12 ~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qr-L~~~gk~   52 (76)
T d1z2ma2          12 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFW-LTFEGKP   52 (76)
T ss_dssp             TSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEE-EEETTEE
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHEE-EEECCEE
T ss_conf             9999999978978499999999877567943737-8877708


No 16 
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=29.76  E-value=18  Score=15.47  Aligned_cols=41  Identities=22%  Similarity=0.284  Sum_probs=34.0

Q ss_pred             HCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCE
Q ss_conf             489099998887898899999999968743378998518963
Q gi|254780259|r   24 GQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLIRKGKV   65 (110)
Q Consensus        24 e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~~~gK~   65 (110)
                      ....+++.|+++.+=.++|+.++...|+.+...+ +...||.
T Consensus         9 ~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qr-Li~~Gk~   49 (73)
T d1bt0a_           9 TGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQR-LIYAGKQ   49 (73)
T ss_dssp             TSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEE-EEETTEE
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHCCCHHHEE-EEECCEE
T ss_conf             9999999988978199999988878599969999-8989808


No 17 
>d1ywxa1 d.12.1.3 (A:1-102) Ribosomal protein S24e {Methanococcus maripaludis [TaxId: 39152]}
Probab=28.78  E-value=7.3  Score=17.71  Aligned_cols=47  Identities=15%  Similarity=0.203  Sum_probs=32.8

Q ss_pred             CCHHHHHHHHCCEEEEEECC---CCCHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf             07998888648909999888---789889999999996874337899851
Q gi|254780259|r   15 IAEKSTLLAGQNQVVFNVKK---DSSKSEIKSAVEALFSVKVVSVNTLIR   61 (110)
Q Consensus        15 ~TEKs~~~~e~n~y~F~V~~---~atK~eIK~ave~~f~V~V~~Vnt~~~   61 (110)
                      +.++-..|+.-.+++|.|.-   .-++.+|+..+-++|+++..-|=....
T Consensus         6 ~~~k~N~LL~RkEi~~~v~h~g~Tpsr~ei~~kla~~~~~~~~~vvv~~~   55 (102)
T d1ywxa1           6 ISDRNNPLLQRREIKFTVSFDAATPSIKDVKMKLVAVLNANKQVLVVDTL   55 (102)
T ss_dssp             EEEEEETTTTEEEEEEEEECSSCCCCHHHHHHHHHHHHTSCSTTEEEEEE
T ss_pred             EEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             86034788462899999978899989999999999977949688999747


No 18 
>d2g1da1 d.12.1.3 (A:1-98) Ribosomal protein S24e {Thermoplasma acidophilum [TaxId: 2303]}
Probab=28.18  E-value=4.3  Score=19.03  Aligned_cols=45  Identities=16%  Similarity=0.235  Sum_probs=32.5

Q ss_pred             CCCHHHHHHHHCCEEEEEEC----CCCCHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             20799888864890999988----8789889999999996874337899
Q gi|254780259|r   14 VIAEKSTLLAGQNQVVFNVK----KDSSKSEIKSAVEALFSVKVVSVNT   58 (110)
Q Consensus        14 ~~TEKs~~~~e~n~y~F~V~----~~atK~eIK~ave~~f~V~V~~Vnt   58 (110)
                      ++++|...|+.-.+++|.|.    +.-++.||+..+-++|+++..-|=.
T Consensus         5 I~~~k~NpLL~RrEi~~~v~h~g~~Tpsr~ei~~kla~~~~~~~~~vvv   53 (98)
T d2g1da1           5 IKEKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGVDKELVIV   53 (98)
T ss_dssp             EEEEEECSSSCEEEEEEEEECCTTSCCCHHHHHHHHHHHHHSCSTTEEC
T ss_pred             EEEECCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf             9860228885628999999718999989999999999997899687999


No 19 
>d2v94a1 d.12.1.3 (A:1-93) Ribosomal protein S24e {Pyrococcus abyssi [TaxId: 29292]}
Probab=23.71  E-value=15  Score=15.91  Aligned_cols=43  Identities=16%  Similarity=0.336  Sum_probs=31.1

Q ss_pred             HHHHHHHCCEEEEEEC----CCCCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf             9888864890999988----878988999999999687433789985
Q gi|254780259|r   18 KSTLLAGQNQVVFNVK----KDSSKSEIKSAVEALFSVKVVSVNTLI   60 (110)
Q Consensus        18 Ks~~~~e~n~y~F~V~----~~atK~eIK~ave~~f~V~V~~Vnt~~   60 (110)
                      +...|+.-.++.|.+.    +.-++.||+..+-++|+++..-|=...
T Consensus         9 ~~N~LL~R~Ei~~~v~h~g~~Tpsr~ei~~kla~~~~~~~~~vvv~~   55 (93)
T d2v94a1           9 KENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVIQY   55 (93)
T ss_dssp             EEETTTTEEEEEEEEECTTSCCCCHHHHHHHHHHHHTCCGGGEEEEE
T ss_pred             CCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             11787152899999972899998999999999998788978899981


No 20 
>d1xn9a_ d.12.1.3 (A:) Ribosomal protein S24e {Methanosarcina mazei [TaxId: 2209]}
Probab=23.31  E-value=9.3  Score=17.12  Aligned_cols=47  Identities=17%  Similarity=0.265  Sum_probs=32.2

Q ss_pred             CCHHHHHHHHCCEEEEEECC---CCCHHHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf             07998888648909999888---789889999999996874337899851
Q gi|254780259|r   15 IAEKSTLLAGQNQVVFNVKK---DSSKSEIKSAVEALFSVKVVSVNTLIR   61 (110)
Q Consensus        15 ~TEKs~~~~e~n~y~F~V~~---~atK~eIK~ave~~f~V~V~~Vnt~~~   61 (110)
                      +.++-..|+.-.+++|.+.-   .-++.+|+.++-++|+++..-|=....
T Consensus         6 ~~~k~N~LL~R~Ei~~~v~h~g~Tpsr~ei~~kla~~~~~~~~~vvv~~~   55 (101)
T d1xn9a_           6 IKDKKNPLLNRRELDFIVKYEGSTPSRNDVRNKLAAMLNAPLELLVIQRI   55 (101)
T ss_dssp             EEEEEETTTTEEEEEEEEECSSSCCCHHHHHHHHHHHTTCCTTTEEEEEE
T ss_pred             EEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             86044888241899999988999989999999999967939577999747


No 21 
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.04  E-value=25  Score=14.62  Aligned_cols=33  Identities=15%  Similarity=0.249  Sum_probs=27.3

Q ss_pred             CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf             90999988878988999999999687433789985
Q gi|254780259|r   26 NQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLI   60 (110)
Q Consensus        26 n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~   60 (110)
                      +.|+=.++.+++..++++.++. || .|.+|....
T Consensus         4 ~l~V~nLp~~~te~~l~~~f~~-~G-~v~~v~i~~   36 (82)
T d1fxla1           4 NLIVNYLPQNMTQEEFRSLFGS-IG-EIESCKLVR   36 (82)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHT-TS-CEEEEEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHH-HC-CCCCCCCEE
T ss_conf             8999898987989999999999-69-764101000


No 22 
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.05  E-value=26  Score=14.50  Aligned_cols=37  Identities=11%  Similarity=0.118  Sum_probs=31.9

Q ss_pred             HHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEE
Q ss_conf             6489099998887898899999999968743378998
Q gi|254780259|r   23 AGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTL   59 (110)
Q Consensus        23 ~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~   59 (110)
                      .+...+...|++..|=.++|..++.+||+.+....-+
T Consensus        20 ~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~   56 (97)
T d1wjna_          20 PERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLS   56 (97)
T ss_dssp             SSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHEEEE
T ss_conf             7775699991999979999999999879696893999


No 23 
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.91  E-value=26  Score=14.49  Aligned_cols=38  Identities=13%  Similarity=0.323  Sum_probs=30.2

Q ss_pred             HHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEE
Q ss_conf             8864890999988878988999999999687433789985
Q gi|254780259|r   21 LLAGQNQVVFNVKKDSSKSEIKSAVEALFSVKVVSVNTLI   60 (110)
Q Consensus        21 ~~~e~n~y~F~V~~~atK~eIK~ave~~f~V~V~~Vnt~~   60 (110)
                      .+.+.|.|+-.+++++|..++++.++. || .|.+|..+.
T Consensus         3 s~k~~~lfV~nLp~~~te~~L~~~F~~-~G-~v~~v~i~~   40 (85)
T d1fxla2           3 SIRDANLYVSGLPKTMTQKELEQLFSQ-YG-RIITSRILV   40 (85)
T ss_dssp             GGTTCEEEEESCCTTCCHHHHHHHHGG-GS-CEEEEEEEE
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHH-HC-CCCCCCCCC
T ss_conf             888999999598998989999999998-49-763103012


Done!