HHsearch alignment for GI: 254780260 and conserved domain: pfam00573
>pfam00573 Ribosomal_L4 Ribosomal protein L4/L1 family. This family includes Ribosomal L4/L1 from eukaryotes and archaebacteria and L4 from eubacteria. L4 from yeast has been shown to bind rRNA.
Probab=100.00 E-value=0 Score=449.68 Aligned_cols=189 Identities=41% Similarity=0.580 Sum_probs=181.9
Q ss_pred EEECHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86097793987668999999999997278862001362121489887645588755423653111010577422778753
Q gi|254780260|r 17 ISVSEDIFALKPQQGILARVLRWQSWRKRIGCSKSKGRSEVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVPII 96 (207)
Q Consensus 17 i~l~~~vf~~~~~~~li~~~v~~~~~~~R~gta~tk~r~ev~gs~kK~~~QKGtGrAR~Gs~rsp~~rgGg~afgp~pr~ 96 (207)
T Consensus 1 i~l~~~vF~~~~r~dll~~~v~~~~~~~rq~~~~tk~r~ev~gs~~K~~~QKGtG~AR~G~~rsp~~rgGg~a~gp~pr~ 80 (190)
T pfam00573 1 VELPPAVFGAEIRPDLLHRVVVAQLANRRQGTASTKTRSEVSGGGKKPWRQKGTGRARAGSIRSPLWRGGGVAFGPKPRD 80 (190)
T ss_pred CCCCHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEECCCCCCC
T ss_conf 91887882898769999999999998530577779850102465788888899864778988688434781523895640
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCC-CEEEEECCCCCHHHHHHHCCCCCCEE
Q ss_conf 20000159999999998787650595899514337877818999984113556-32786157751789999627889568
Q gi|254780260|r 97 GVHALPKKVRSLALRHALSDKFCSNDIMVIDNLVSKECKTKYLVTRFRALDLS-NALIIDGCQLDRNFQLAARNIPNINL 175 (207)
Q Consensus 97 ~~~klnkK~~~lAl~saLs~k~~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~-~~llv~~~~~d~n~~~s~rNi~~v~v 175 (207)
T Consensus 81 ~~~klnkK~rrlAl~saLS~k~~~~~l~vvd~~~~~~~KTk~~~~~L~~l~~~~~~~LiV~~~~~~n~~~a~rNi~~v~v 160 (190)
T pfam00573 81 YSYKLNKKVRRLALRSALSAKAREGKLVVVDDFELEIPKTKEAVKLLKNLGLKGKSVLIVVDEKDENLYLSARNLPGVDV 160 (190)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCCEE
T ss_conf 04452399999999999998504776289614777888889999999973998871799978801679999708788158
Q ss_pred EEHHCCCHHHHEECCCEEEEHHHHHHHHHH
Q ss_conf 424028875710059089849999999997
Q gi|254780260|r 176 LPVQGINVYDILRCSKLVLSKSAIEALEDR 205 (207)
Q Consensus 176 ~~~~~lnv~dll~~~~iVit~~Ai~~l~e~ 205 (207)
T Consensus 161 ~~~~~lnv~dll~~~~lvit~~Al~~l~e~ 190 (190)
T pfam00573 161 VTVDGLNVYDLLPADKVVITKSALEKLEER 190 (190)
T ss_pred EECCCCCHHHHHCCCCEEEEHHHHHHHHCC
T ss_conf 754882099984799699878999998549