HHsearch alignment of GI: 254780260 and MMDB domain: 1vq8_C_1-23_133-246
>1vq8_C (C:1-23,C:133-246) 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui}
Probab=99.80 E-value=9e-21 Score=137.97 Aligned_cols=87 Identities=20% Similarity=0.196 Sum_probs=77.7
Q ss_pred HCCCEEEEECCCCCCCCHHHHHHHHHHCCCCC-----------------------EEEEECCCCCHHHHHHHCCCCCCEE
Q ss_conf 05958995143378778189999841135563-----------------------2786157751789999627889568
Q gi|254780260|r 119 CSNDIMVIDNLVSKECKTKYLVTRFRALDLSN-----------------------ALIIDGCQLDRNFQLAARNIPNINL 175 (207)
Q Consensus 119 ~~~~l~Vvd~~~~~~~KTK~~~~~L~~l~~~~-----------------------~llv~~~~~d~n~~~s~rNi~~v~v 175 (207)
.+++++|||+|.+++||||+++++|+++++.. ..+++..+.|+|+++|+||||+|++
T Consensus 24 ~~e~liVVddf~~~~~KTK~~v~~Lk~l~~~~~~~~v~~~k~~s~~~~~~~~~~kk~Liv~~~~d~n~~~S~RNLp~V~v 103 (137)
T 1vq8_C 24 RDEVPVVVSDDFEDLVKTQEVVSLLEALDVHADIDRADETKIKAGQGSARGRKYRRPASILFVTSDEPSTAARNLAGADV 103 (137)
T ss_dssp CSSCSEEECGGGGGCCCHHHHHHHHHHTTCTHHHHHSSCCEECSSGGGGGTCCEECCCCCEEEESSSCCTTTTTSTTCEE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEE
T ss_conf 57425884156432124799999998558765437840453222200010233334554322367089999748999779
Q ss_pred EEHHCCCHHHHEECCC----EEEEHHHHHHHHHH
Q ss_conf 4240288757100590----89849999999997
Q gi|254780260|r 176 LPVQGINVYDILRCSK----LVLSKSAIEALEDR 205 (207)
Q Consensus 176 ~~~~~lnv~dll~~~~----iVit~~Ai~~l~e~ 205 (207)
++++++|+||||++++ +|||++|++.|+||
T Consensus 104 l~~~~lNvydLL~~d~l~r~VViTksAl~~LeeR 137 (137)
T 1vq8_C 104 ATASEVNTEDLAPGGAPGRLTVFTESALAEVAER 137 (137)
T ss_dssp EETTTCCHHHHSGGGCCCCCEEEEHHHHHHGGGC
T ss_pred EECCCCCHHHCCCCCCCCCEEEEEHHHHHHHHCC
T ss_conf 8669841999026687786099848999998549