HHsearch alignment of GI: 254780260 and MMDB domain: 1vq8_C_24-132
>1vq8_C (C:24-132) 50S ribosomal protein L4E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui}
Probab=100.00 E-value=1.1e-39 Score=245.40 Aligned_cols=106 Identities=15% Similarity=0.071 Sum_probs=99.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCH--HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCH
Q ss_conf 876689999999999972788620013621--214898876455887554236531110105774227787-53200001
Q gi|254780260|r 26 LKPQQGILARVLRWQSWRKRIGCSKSKGRS--EVAYTGSKMYVQKGTGRARHSSKSVSQFRGGGKAFGPVP-IIGVHALP 102 (207)
Q Consensus 26 ~~~~~~li~~~v~~~~~~~R~gta~tk~r~--ev~gs~kK~~~QKGtGrAR~Gs~rsp~~rgGg~afgp~p-r~~~~kln 102 (207)
+|+|.||||++|+||++|+||||+++++|+ ||+||++|||+||||||||+|++++|+|||||+||||+| |+|+++||
T Consensus 1 t~~r~dii~~~v~~~~~~~rqg~~~~k~rg~~ev~~s~~K~~~qkgtgrar~G~~rsp~~rgGg~a~gpk~~r~~~~kln 80 (109)
T 1vq8_C 1 TPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKLDGRARRVPQAVKGRSAHPPKTEKDRSLDLN 80 (109)
T ss_dssp SCCCHHHHHHHHHHHHHHTCCCCCCCTTTTTCCCCBCCCSSSSCCCCCEETTEECSSTTSTTCCCSSCCCTTCCCCCCCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCHHCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHHHHH
T ss_conf 98779999999999997372776767621034540454650244465664567776787267744669987300567788
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 599999999987876505958995143378
Q gi|254780260|r 103 KKVRSLALRHALSDKFCSNDIMVIDNLVSK 132 (207)
Q Consensus 103 kK~~~lAl~saLs~k~~~~~l~Vvd~~~~~ 132 (207)
||++++|+++|||.++.++ +++||+|.+|
T Consensus 81 kK~r~~Al~sals~k~~~~-~viv~~~~ie 109 (109)
T 1vq8_C 81 DKERQLAVRSALAATADAD-LVADRGHEFD 109 (109)
T ss_dssp HHHHHHHHHHHHHHTTCHH-HHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHHHCCC-EEEEECCEEC
T ss_conf 9999999999999851244-2787422403